ncbi-blast+ →
2.12.0+ds-3+b2 →
armhf → 2022-10-29 11:44:30
sbuild (Debian sbuild) 0.78.1 (09 February 2019) on test2019
+==============================================================================+
| ncbi-blast+ 2.12.0+ds-3+b2 (armhf) Sat, 29 Oct 2022 03:12:33 +0000 |
+==============================================================================+
Package: ncbi-blast+
Version: 2.12.0+ds-3+b2
Source Version: 2.12.0+ds-3
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
Build Type: any
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/bookworm-staging-armhf-sbuild-568de88e-bf4e-4f83-9376-33a111e88dc1' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/ncbi-blast+-iztKfv/resolver-drDu5c' with '<<RESOLVERDIR>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [13.4 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [14.2 MB]
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Reading package lists...
W: http://172.17.4.1/private/dists/bookworm-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
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Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'ncbi-blast+' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/ncbi-blastplus.git
Please use:
git clone https://salsa.debian.org/med-team/ncbi-blastplus.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 47.5 MB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main ncbi-blast+ 2.12.0+ds-3 (dsc) [2354 B]
Get:2 http://172.17.4.1/private bookworm-staging/main ncbi-blast+ 2.12.0+ds-3 (tar) [47.5 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main ncbi-blast+ 2.12.0+ds-3 (diff) [33.2 kB]
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I: NOTICE: Log filtering will replace 'build/ncbi-blast+-iztKfv/ncbi-blast+-2.12.0+ds' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/ncbi-blast+-iztKfv' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), build-essential, fakeroot, 2to3, libboost-test-dev, libbz2-dev, libc-dev-bin, libgnutls28-dev, liblmdb-dev, libmbedtls-dev, libpcre3-dev, time, zlib1g-dev, procps
Filtered Build-Depends: debhelper-compat (= 13), build-essential, fakeroot, 2to3, libboost-test-dev, libbz2-dev, libc-dev-bin, libgnutls28-dev, liblmdb-dev, libmbedtls-dev, libpcre3-dev, time, zlib1g-dev, procps
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
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Reading package lists...
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Install main build dependencies (apt-based resolver)
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Installing build dependencies
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The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
2to3 autoconf automake autopoint autotools-dev bsdextrautils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libboost-test-dev
libboost-test1.74-dev libboost-test1.74.0 libboost1.74-dev libbz2-dev
libdebhelper-perl libelf1 libevent-2.1-7 libexpat1
libfile-stripnondeterminism-perl libgmp-dev libgmpxx4ldbl libgnutls-dane0
libgnutls-openssl27 libgnutls28-dev libgnutlsxx30 libicu71 libidn2-dev
liblmdb-dev liblmdb0 libmagic-mgc libmagic1 libmbedcrypto7 libmbedtls-dev
libmbedtls14 libmbedx509-1 libmpdec3 libncurses6 libp11-kit-dev libpcre16-3
libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libprocps8
libpython3-stdlib libpython3.10-minimal libpython3.10-stdlib
libsub-override-perl libtasn1-6-dev libtool libuchardet0 libunbound8 libxml2
m4 man-db media-types nettle-dev po-debconf procps python3 python3-lib2to3
python3-minimal python3.10 python3.10-minimal time zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc
libasprintf-dev libgettextpo-dev groff libboost1.74-doc
libboost-atomic1.74-dev libboost-chrono1.74-dev libboost-container1.74-dev
libboost-context1.74-dev libboost-contract1.74-dev
libboost-coroutine1.74-dev libboost-date-time1.74-dev
libboost-exception1.74-dev libboost-fiber1.74-dev
libboost-filesystem1.74-dev libboost-graph1.74-dev
libboost-graph-parallel1.74-dev libboost-iostreams1.74-dev
libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev
libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev
libboost-program-options1.74-dev libboost-python1.74-dev
libboost-random1.74-dev libboost-regex1.74-dev
libboost-serialization1.74-dev libboost-stacktrace1.74-dev
libboost-system1.74-dev libboost-thread1.74-dev libboost-timer1.74-dev
libboost-type-erasure1.74-dev libboost-wave1.74-dev libboost1.74-tools-dev
libmpfrc++-dev libntl-dev libboost-nowide1.74-dev gmp-doc libgmp10-doc
libmpfr-dev dns-root-data gnutls-bin gnutls-doc libmbedtls-doc p11-kit-doc
libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less
www-browser libmail-box-perl python3-doc python3-tk python3-venv
python3.10-venv python3.10-doc binfmt-support
Recommended packages:
curl | wget | lynx bzip2-doc libarchive-cpio-perl lmdb-doc libgpm2
libtasn1-doc libltdl-dev libmail-sendmail-perl psmisc
The following NEW packages will be installed:
2to3 autoconf automake autopoint autotools-dev bsdextrautils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libboost-test-dev
libboost-test1.74-dev libboost-test1.74.0 libboost1.74-dev libbz2-dev
libdebhelper-perl libelf1 libevent-2.1-7 libexpat1
libfile-stripnondeterminism-perl libgmp-dev libgmpxx4ldbl libgnutls-dane0
libgnutls-openssl27 libgnutls28-dev libgnutlsxx30 libicu71 libidn2-dev
liblmdb-dev liblmdb0 libmagic-mgc libmagic1 libmbedcrypto7 libmbedtls-dev
libmbedtls14 libmbedx509-1 libmpdec3 libncurses6 libp11-kit-dev libpcre16-3
libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libprocps8
libpython3-stdlib libpython3.10-minimal libpython3.10-stdlib
libsub-override-perl libtasn1-6-dev libtool libuchardet0 libunbound8 libxml2
m4 man-db media-types nettle-dev po-debconf procps python3 python3-lib2to3
python3-minimal python3.10 python3.10-minimal
sbuild-build-depends-main-dummy time zlib1g-dev
0 upgraded, 74 newly installed, 0 to remove and 29 not upgraded.
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+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.19.20-v7+ #1 SMP Mon Mar 18 11:37:02 GMT 2019 armhf (armv7l)
Toolchain package versions: binutils_2.39-6+rpi1 dpkg-dev_1.21.9+rpi1 g++-12_12.2.0-3+rpi1 gcc-12_12.2.0-3+rpi1 libc6-dev_2.35-2+rpi1 libstdc++-12-dev_12.2.0-3+rpi1 libstdc++6_12.2.0-3+rpi1 linux-libc-dev_5.19.6-1+rpi1
Package versions: 2to3_3.10.6-1 adduser_3.129 apt_2.5.3 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-9 autotools-dev_20220109.1 base-files_12.3+rpi1 base-passwd_3.6.1 bash_5.2~rc2-2 binutils_2.39-6+rpi1 binutils-arm-linux-gnueabihf_2.39-6+rpi1 binutils-common_2.39-6+rpi1 bsdextrautils_2.38.1-1.1 bsdutils_1:2.38.1-1.1 build-essential_12.9 bzip2_1.0.8-5+b2 coreutils_9.1-1 cpp_4:12.2.0-1+rpi1 cpp-12_12.2.0-3+rpi1 dash_0.5.11+git20210903+057cd650a4ed-9 debconf_1.5.79 debhelper_13.10 debianutils_5.7-0.3 dh-autoreconf_20 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.8-1 dirmngr_2.2.39-1 dpkg_1.21.9+rpi1 dpkg-dev_1.21.9+rpi1 dwz_0.14+20220924-2 e2fsprogs_1.46.6~rc1-1 fakeroot_1.29-1 file_1:5.41-4 findutils_4.9.0-3 g++_4:12.2.0-1+rpi1 g++-12_12.2.0-3+rpi1 gcc_4:12.2.0-1+rpi1 gcc-12_12.2.0-3+rpi1 gcc-12-base_12.2.0-3+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-9 gettext-base_0.21-9 gnupg_2.2.39-1 gnupg-l10n_2.2.39-1 gnupg-utils_2.2.39-1 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libdb5.3_5.3.28+dfsg1-0.10 libdebconfclient0_0.264 libdebhelper-perl_13.10 libdpkg-perl_1.21.9+rpi1 libelf1_0.187-2+rpi2 libevent-2.1-7_2.1.12-stable-5+b1 libexpat1_2.4.9-1 libext2fs2_1.46.6~rc1-1 libfakeroot_1.29-1 libffi8_3.4.2-4 libfile-stripnondeterminism-perl_1.13.0-1 libgcc-12-dev_12.2.0-3+rpi1 libgcc-s1_12.2.0-3+rpi1 libgcrypt20_1.10.1-2+b2 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgmp-dev_2:6.2.1+dfsg1-1.1 libgmp10_2:6.2.1+dfsg1-1.1 libgmpxx4ldbl_2:6.2.1+dfsg1-1.1 libgnutls-dane0_3.7.8-2 libgnutls-openssl27_3.7.8-2 libgnutls28-dev_3.7.8-2 libgnutls30_3.7.8-2 libgnutlsxx30_3.7.8-2 libgomp1_12.2.0-3+rpi1 libgpg-error0_1.45-2 libgssapi-krb5-2_1.20-1 libhogweed6_3.8.1-2 libicu71_71.1-3 libidn2-0_2.3.3-1 libidn2-dev_2.3.3-1 libisl23_0.25-1 libk5crypto3_1.20-1 libkeyutils1_1.6.3-1 libkrb5-3_1.20-1 libkrb5support0_1.20-1 libksba8_1.6.0-3 libldap-2.5-0_2.5.13+dfsg-2+rpi1 liblmdb-dev_0.9.24-1 liblmdb0_0.9.24-1 liblz4-1_1.9.4-1+rpi1 liblzma5_5.2.5-2.1 libmagic-mgc_1:5.41-4 libmagic1_1:5.41-4 libmbedcrypto7_2.28.1-1 libmbedtls-dev_2.28.1-1 libmbedtls14_2.28.1-1 libmbedx509-1_2.28.1-1 libmount1_2.38.1-1.1 libmpc3_1.2.1-2 libmpdec3_2.5.1-2+rpi1 libmpfr6_4.1.0-3 libncurses6_6.3+20220423-2 libncursesw6_6.3+20220423-2 libnettle8_3.8.1-2 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit-dev_0.24.1-1 libp11-kit0_0.24.1-1 libpam-cap_1:2.44-1 libpam-modules_1.5.2-5 libpam-modules-bin_1.5.2-5 libpam-runtime_1.5.2-5 libpam0g_1.5.2-5 libpcre16-3_2:8.39-14 libpcre2-8-0_10.40-1+b2 libpcre3_2:8.39-14 libpcre3-dev_2:8.39-14 libpcre32-3_2:8.39-14 libpcrecpp0v5_2:8.39-14 libperl5.32_5.32.1-6 libperl5.34_5.34.0-5 libpipeline1_1.5.6-3 libprocps8_2:3.3.17-7.1 libpython3-stdlib_3.10.6-1 libpython3.10-minimal_3.10.7-2 libpython3.10-stdlib_3.10.7-2 libreadline8_8.2-1 libsasl2-2_2.1.28+dfsg-8 libsasl2-modules-db_2.1.28+dfsg-8 libseccomp2_2.5.4-1+rpi1 libselinux1_3.4-1 libsemanage-common_3.4-1 libsemanage2_3.4-1 libsepol1_3.1-1 libsepol2_3.4-2 libsmartcols1_2.38.1-1.1 libsqlite3-0_3.39.4-1 libss2_1.46.6~rc1-1 libssl1.1_1.1.1o-1 libssl3_3.0.5-4 libstdc++-12-dev_12.2.0-3+rpi1 libstdc++6_12.2.0-3+rpi1 libsub-override-perl_0.09-4 libsystemd0_251.5-1+rpi1 libtasn1-6_4.19.0-2 libtasn1-6-dev_4.19.0-2 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-4 libubsan1_12.2.0-3+rpi1 libuchardet0_0.0.7-1 libudev1_251.5-1+rpi1 libunbound8_1.17.0-1 libunistring2_1.0-2 libuuid1_2.38.1-1.1 libxml2_2.9.14+dfsg-1 libxxhash0_0.8.1-1 libzstd1_1.5.2+dfsg-1 linux-libc-dev_5.19.6-1+rpi1 login_1:4.12.3+dfsg1-1 logsave_1.46.6~rc1-1 lsb-base_11.4+rpi1 m4_1.4.19-1 make_4.3-4.1 man-db_2.11.0-1 mawk_1.3.4.20200120-3.1 media-types_8.0.0 mount_2.38.1-1.1 nano_6.4-1 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 nettle-dev_3.8.1-2 passwd_1:4.12.3+dfsg1-1 patch_2.7.6-7 perl_5.34.0-5 perl-base_5.34.0-5 perl-modules-5.32_5.32.1-6 perl-modules-5.34_5.34.0-5 pinentry-curses_1.2.0-2 po-debconf_1.0.21+nmu1 procps_2:3.3.17-7.1 python3_3.10.6-1 python3-lib2to3_3.10.7-1 python3-minimal_3.10.6-1 python3.10_3.10.7-2 python3.10-minimal_3.10.7-2 raspbian-archive-keyring_20120528.2 readline-common_8.2-1 rpcsvc-proto_1.4.2-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sgml-base_1.31 sysvinit-utils_3.05-6 tar_1.34+dfsg-1 time_1.9-0.2 tzdata_2022d-1 util-linux_2.38.1-1.1 util-linux-extra_2.38.1-1.1 xz-utils_5.2.5-2.1 zlib1g_1:1.2.11.dfsg-4.1 zlib1g-dev_1:1.2.11.dfsg-4.1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 3.0 (quilt)
Source: ncbi-blast+
Binary: ncbi-blast+, ncbi-blast+-legacy
Architecture: any all
Version: 2.12.0+ds-3
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Olivier Sallou <osallou@debian.org>, Andreas Tille <tille@debian.org>, Aaron M. Ucko <ucko@debian.org>
Homepage: https://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/
Standards-Version: 4.6.0
Vcs-Browser: https://salsa.debian.org/med-team/ncbi-blastplus
Vcs-Git: https://salsa.debian.org/med-team/ncbi-blastplus.git
Testsuite: autopkgtest
Build-Depends: debhelper-compat (= 13)
Build-Depends-Arch: 2to3, libboost-test-dev, libbz2-dev, libc-dev-bin, libgnutls28-dev, liblmdb-dev, libmbedtls-dev, libpcre3-dev, time, zlib1g-dev, procps
Package-List:
ncbi-blast+ deb science optional arch=any
ncbi-blast+-legacy deb science optional arch=all
Checksums-Sha1:
8056873be16144f6a3ab6a58b92e17369f17c782 47492896 ncbi-blast+_2.12.0+ds.orig.tar.xz
088aa9fb0b1acdb76c77411f52108609cce9ef9f 33224 ncbi-blast+_2.12.0+ds-3.debian.tar.xz
Checksums-Sha256:
ba196a539c187d838564e84d0bf32e1836e2f852db3da7d12a267dced46ae91a 47492896 ncbi-blast+_2.12.0+ds.orig.tar.xz
012bdff3981f9f5b316969f215a085cce2dada26013e5bdfe7487fecee3de9fa 33224 ncbi-blast+_2.12.0+ds-3.debian.tar.xz
Files:
1c4dc0b18d703a41f1563c06eeec2499 47492896 ncbi-blast+_2.12.0+ds.orig.tar.xz
99492e60077c2dadc1e833b208b873d1 33224 ncbi-blast+_2.12.0+ds-3.debian.tar.xz
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gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.8zIm5lpu/trustedkeys.kbx': General error
gpgv: Signature made Thu Feb 10 14:48:23 2022 UTC
gpgv: using RSA key 5FB46F83D3B952046335D26D78DC68DB326D8438
gpgv: issuer "osallou@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify signature ./ncbi-blast+_2.12.0+ds-3.dsc
dpkg-source: info: extracting ncbi-blast+ in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking ncbi-blast+_2.12.0+ds.orig.tar.xz
dpkg-source: info: unpacking ncbi-blast+_2.12.0+ds-3.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying optin_usage_report
dpkg-source: info: applying enable_clean_after_failed_compile
dpkg-source: info: applying hurd_fixes
dpkg-source: info: applying legacy_rename_rpsblast
dpkg-source: info: applying fix_lib_deps
dpkg-source: info: applying no_multiarch_rpath
dpkg-source: info: applying use_pie_for_apps
dpkg-source: info: applying skip_services_unit_test
dpkg-source: info: applying fix_configure
dpkg-source: info: applying support_x32
dpkg-source: info: applying suppress_tls_version_checks
dpkg-source: info: applying optionally_keep_sequence
dpkg-source: info: applying fix_unit_tests
dpkg-source: info: applying system_mbedtls_only
dpkg-source: info: applying reprobuild
dpkg-source: info: applying spelling
dpkg-source: info: applying support_gcc10
dpkg-source: info: applying run_perl_directly
dpkg-source: info: applying tune_lmdb_defaults
Check disk space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 2.12.0+ds-3+b2
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/112/bus
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
INVOCATION_ID=79d111ecf76d4d72929efb4c6c309344
JOURNAL_STREAM=8:26624
LANG=en_GB.UTF-8
LC_ALL=C.UTF-8
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=117
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-568de88e-bf4e-4f83-9376-33a111e88dc1
SCHROOT_UID=112
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
XDG_RUNTIME_DIR=/run/user/112
XDG_SESSION_CLASS=background
XDG_SESSION_ID=c148319
XDG_SESSION_TYPE=unspecified
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage -us -uc -mRaspbian pi4 based autobuilder <root@raspbian.org> -B -rfakeroot
dpkg-buildpackage: info: source package ncbi-blast+
dpkg-buildpackage: info: source version 2.12.0+ds-3+b2
dpkg-buildpackage: info: source distribution bookworm-staging
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
dpkg-source: info: using options from ncbi-blast+-2.12.0+ds/debian/source/options: --extend-diff-ignore=(^|/)config.(sub|guess)$
debian/rules clean
dh clean --sourcedirectory=c++
dh_auto_clean -O--sourcedirectory=c\+\+
dh_autoreconf_clean -O--sourcedirectory=c\+\+
debian/rules override_dh_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
cp c++/src/util/lmdb/Makefile.orig c++/src/util/lmdb/Makefile.orig.save
cp c++/src/util/lmdbxx/Makefile.orig c++/src/util/lmdbxx/Makefile.orig.save
cp c++/src/util/lmdbxx/lmdb++.h.orig c++/src/util/lmdbxx/lmdb++.h.orig.save
cp c++/configure.orig configure.orig.save
dh_clean
#Tricky - for each module directory there may be several module files
#or there may be none but then there is still a module named after the
#directory. Clean everything!
for x in c++/src/objects/* ; do \
(cd "$x" && ( \
mods="`echo *.module`" ; \
[ "${mods#*\*}" = "$mods" ] || mods="`basename $x`" ; \
for mod in $mods ; do \
../../../BUILD/build/new_module.sh $mod \
purge_sources ; \
done ) ; \
) ; \
done
/bin/sh: 2: cd: can't cd to c++/src/objects/CMakeLists.txt
/bin/sh: 2: cd: can't cd to c++/src/objects/Makefile.in
/bin/sh: 2: cd: can't cd to c++/src/objects/Makefile.sources
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 2: cd: can't cd to c++/src/objects/nt_sources.cmd
/bin/sh: 2: cd: can't cd to c++/src/objects/nt_sources.sh
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
make[1]: [debian/rules:148: override_dh_clean] Error 127 (ignored)
rm -rf c++/compilers/dll c++/config.log c++/Makefile
rm -f c++/configure.lineno c++/src/objects/blastxml/blastxml.module
rm -f c++/include/common/ncbi_revision.h
find -name check_exec.pid -delete
rm -rf c++/BUILD c++/BUILD.native fakehome
mv configure.orig.save c++/configure.orig
mv c++/src/util/lmdb/Makefile.orig.save c++/src/util/lmdb/Makefile.orig
mv c++/src/util/lmdbxx/Makefile.orig.save c++/src/util/lmdbxx/Makefile.orig
mv c++/src/util/lmdbxx/lmdb++.h.orig.save c++/src/util/lmdbxx/lmdb++.h.orig
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules binary-arch
dh binary-arch --sourcedirectory=c++
dh_update_autotools_config -a -O--sourcedirectory=c\+\+
dh_autoreconf -a -O--sourcedirectory=c\+\+
debian/rules override_dh_auto_configure-arch
make[1]: Entering directory '/<<PKGBUILDDIR>>'
mkdir -p /<<PKGBUILDDIR>>/fakehome
cd c++ && CONFIG_SHELL=/bin/bash \
./configure --without-autodep --without-makefile-auto-update --with-flat-makefile --without-caution --without-dbapi --without-lzo --without-debug --without-downloaded-vdb --without-sse42 CFLAGS_FOR_BUILD="-g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIE" LDFLAGS_FOR_BUILD="-specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed" --with-dll --with-mt --with-runpath=/usr/lib/ncbi-blast+ --with-build-root=BUILD --with-mbedtls --with-symbols \
|| (tail -v -n +0 config.log BUILD/status/config.log; exit 1)
configure: WARNING: unrecognized options: --without-dbapi
configure: loading site script ./src/build-system/config.site
configure: creating cache config.cache
configure: WARNING: --with(out)-dbapi is deprecated
configure: WARNING: please simply pass an appropriate project list
checking TeamCity build number... none
checking Subversion revision... unknown
checking NCBI stable components' version... unknown
checking build system type... armv7l-unknown-linux-gnueabihf
checking host system type... armv7l-unknown-linux-gnueabihf
checking for a BSD-compatible install... /usr/bin/install -c
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking for armv7l-unknown-linux-gnueabihf-gcc... no
checking for gcc... gcc
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking how to run the C preprocessor... gcc -E
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
adjusted C compiler: /usr/bin/gcc
adjusted C++ compiler: /usr/bin/g++
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking minix/config.h usability... no
checking minix/config.h presence... no
checking for minix/config.h... no
checking whether it is safe to define __EXTENSIONS__... yes
checking whether /usr/bin/gcc has an option to export all symbols... -Wl,-export-dynamic
checking whether /usr/bin/gcc supports -Wl,--{en,dis}able-new-dtags... yes
checking whether /usr/bin/gcc has an option to discard unneeded shared libraries... -Wl,--as-needed
checking whether /usr/bin/gcc has an option to link in whole static archives... -Wl,--whole-archive
checking whether _LIBCPP_VERSION is declared... no
checking how to enable C++ '14 features in /usr/bin/g++ ... -std=gnu++14
checking how to enable C '11 or at least '99 features in /usr/bin/gcc ... -std=gnu11 -fgnu89-inline
checking for dpkg-architecture... /usr/bin/dpkg-architecture
checking for gawk... no
checking for mawk... mawk
checking for GNU make... /usr/bin/make
checking for mawk... /usr/bin/mawk
checking for /usr/bin/make... /usr/bin/make
checking whether ln -s works... yes
checking for ranlib... ranlib
checking for ar... ar cr
checking ranlib's effectiveness... neutral
checking for strip... strip
checking whether strip loses runtime type information... no
checking for ccache... no
checking for tail... /usr/bin/tail
checking whether /usr/bin/tail accepts modern syntax (-n N)... yes
checking for basename... /usr/bin/basename
checking for sed... /bin/sed
checking for touch... /bin/touch
checking for egrep... (cached) /bin/grep -E
checking how to run /bin/grep -E quietly... /bin/grep -E -q
checking for valgrind... no
checking for ldd... /usr/bin/ldd
checking whether /usr/bin/ldd accepts -r... yes
checking for uuidgen... no
checking for cd_reporter... no
checking for size_t... yes
checking size of size_t... 4
checking for amq... no
checking whether /usr/bin/gcc -std=gnu11 -fgnu89-inline supports -Wl,--no-allow-shlib-undefined... yes
checking how to run the C preprocessor... gcc -E
checking whether cross-directory hard links work... yes
checking how to run the C++ preprocessor... /usr/bin/g++ -std=gnu++14 -E
checking iostream usability... yes
checking iostream presence... yes
checking for iostream... yes
checking iostream.h usability... no
checking iostream.h presence... no
checking for iostream.h... no
checking fstream usability... yes
checking fstream presence... yes
checking for fstream... yes
checking fstream.h usability... no
checking fstream.h presence... no
checking for fstream.h... no
checking strstream usability... yes
checking strstream presence... yes
checking for strstream... yes
checking strstream.h usability... no
checking strstream.h presence... no
checking for strstream.h... no
checking strstrea.h usability... no
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config.status: creating /<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/services/unit_test/Makefile
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config.status: creating /<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb/Makefile
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config.status: creating /<<PKGBUILDDIR>>/c++/BUILD/inc/common/ncbi_build_ver.h
config.status: creating /<<PKGBUILDDIR>>/c++/include/common/ncbi_revision.h
config.status: creating /<<PKGBUILDDIR>>/c++/BUILD/inc/ncbiconf_unix.h
config.status: executing default commands
/<<PKGBUILDDIR>>/c++/BUILD/build/corelib/ncbicfg.c is updated
/<<PKGBUILDDIR>>/c++/BUILD/inc/common/ncbi_build_ver.h is updated
make[2]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/build-system/helpers'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/build-system/helpers TMPL=run_with_lock -kw all
make[3]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/build-system/helpers'
gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIE -DNCBI_APP_BUILT_AS=run_with_lock /<<PKGBUILDDIR>>/c++/src/build-system/helpers/run_with_lock.c -o run_with_lock.o
gcc -Wl,-rpath,/usr/lib/ncbi-blast+ -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -fPIE -pie run_with_lock.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lm -lpthread -o run_with_lock
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f run_with_lock /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f run_with_lock /<<PKGBUILDDIR>>/c++/BUILD/bin/run_with_lock
make[3]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/build-system/helpers'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/build-system/helpers'
Platform not defined for Linux armv7l -- please fix me
project_tree_builder is not found at /net/snowman/vol/export2/win-coremake/App/Ncbi/cppcore/ptb/UNKNOWN/4.9.0/project_tree_builder
Will build project_tree_builder locally
**********************************************************************
Building project_tree_builder
**********************************************************************
make[2]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/corelib'
make[3]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/corelib'
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/corelib'
/usr/bin/make[4] (Makefile.precompile): Nothing to be done for `all'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/corelib'
/usr/bin/make[3] (Makefile.corelib.lib): Nothing to be done for `export-headers'.
/usr/bin/make[3] (Makefile.test_mt.lib): Nothing to be done for `export-headers'.
/usr/bin/make[3] (Makefile.test_boost.lib): Nothing to be done for `export-headers'.
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/corelib TMPL=corelib -w all
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbithr_conf.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimtx.hpp:62,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbireg.hpp:49,
from /<<PKGBUILDDIR>>/c++/include/corelib/metareg.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/corelib/metareg.cpp:35:
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const ncbi::CMetaRegistry::SEntry&}; _Tp = ncbi::CMetaRegistry::SEntry; _Alloc = std::allocator<ncbi::CMetaRegistry::SEntry>]':
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<ncbi::CMetaRegistry::SEntry>::iterator' changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ncbi::CMetaRegistry::SEntry; _Alloc = std::allocator<ncbi::CMetaRegistry::SEntry>]',
inlined from 'const ncbi::CMetaRegistry::SEntry& ncbi::CMetaRegistry::x_Load(const std::string&, ENameStyle, TFlags, ncbi::IRegistry::TFlags, ncbi::IRWRegistry*, const std::string&, ENameStyle, SEntry&, const std::string&)' at /<<PKGBUILDDIR>>/c++/src/corelib/metareg.cpp:235:29:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ncbi::CMetaRegistry::SEntry*, std::vector<ncbi::CMetaRegistry::SEntry> >' changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/corelib'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/corelib/ncbi_os_unix.cpp -o ncbi_os_unix.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/corelib/blob_storage.cpp -o blob_storage.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/corelib/ddumpable.cpp -o ddumpable.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/corelib/env_reg.cpp -o env_reg.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/corelib/metareg.cpp -o metareg.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/corelib/ncbi_config.cpp -o ncbi_config.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/corelib/ncbi_param.cpp -o ncbi_param.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/corelib/ncbi_process.cpp -o ncbi_process.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/corelib/ncbi_safe_static.cpp -o ncbi_safe_static.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/corelib/ncbi_signal.cpp -o ncbi_signal.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/corelib/ncbi_stack.cpp -o ncbi_stack.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/corelib/ncbi_system.cpp -o ncbi_system.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/corelib/ncbiapp.cpp -o ncbiaIn file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/corelib/ncbiapp.cpp:36:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/corelib/ncbiargs.cpp: In function 'std::string ncbi::s_CArgs_ReadFromConsole(const std::string&, EEchoInput, const char*)':
/<<PKGBUILDDIR>>/c++/src/corelib/ncbiargs.cpp:2116:18: warning: ignoring return value of 'ssize_t write(int, const void*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result]
2116 | write( tty, prompt.data(), prompt.length());
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/corelib/ncbiargs.cpp:2145:18: warning: ignoring return value of 'ssize_t write(int, const void*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result]
2145 | write( tty, thx.data(), thx.length());
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/corelib/ncbidiag.cpp:39:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/corelib/ncbidiag.cpp:2158:64: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
2158 | Print("ncbi_app_package_date", NCBI_SBUILDINFO_DEFAULT().date);
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/corelib/ncbidiag.cpp:2158:40: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
2158 | Print("ncbi_app_package_date", NCBI_SBUILDINFO_DEFAULT().date);
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/corelib/ncbidiag.cpp: In static member function 'static void ncbi::CDiagContext::sx_ThreadDataTlsCleanup(ncbi::CDiagContextThreadData*, void*)':
/<<PKGBUILDDIR>>/c++/src/corelib/ncbidiag.cpp:873:33: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(EGetProperties)' is deprecated [-Wdeprecated-declarations]
873 | value->GetProperties(CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/src/corelib/ncbidiag.cpp:38:
/<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:1822:34: note: declared here
1822 | NCBI_DEPRECATED TProperties* GetProperties(EGetProperties flag);
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::SetProperty(const std::string&, const std::string&, EPropertyMode)':
/<<PKGBUILDDIR>>/c++/src/corelib/ncbidiag.cpp:1868:66: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(EGetProperties)' is deprecated [-Wdeprecated-declarations]
1868 | CDiagContextThreadData::GetThreadData().GetProperties(
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
1869 | CDiagContextThreadData::eProp_Create); /* NCBI_FAKE_WARNING */
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/corelib/ncbidiag.cpp:1014:1: note: declared here
1014 | CDiagContextThreadData::GetProperties(EGetProperties flag)
| ^~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/corelib/ncbidiag.cpp: In member function 'std::string ncbi::CDiagContext::GetProperty(const std::string&, EPropertyMode) const':
/<<PKGBUILDDIR>>/c++/src/corelib/ncbidiag.cpp:1931:66: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(EGetProperties)' is deprecated [-Wdeprecated-declarations]
1931 | CDiagContextThreadData::GetThreadData().GetProperties(
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
1932 | CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/corelib/ncbidiag.cpp:1014:1: note: declared here
1014 | CDiagContextThreadData::GetProperties(EGetProperties flag)
| ^~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::DeleteProperty(const std::string&, EPropertyMode)':
/<<PKGBUILDDIR>>/c++/src/corelib/ncbidiag.cpp:1956:66: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(EGetProperties)' is deprecated [-Wdeprecated-declarations]
1956 | CDiagContextThreadData::GetThreadData().GetProperties(
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
1957 | CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/corelib/ncbidiag.cpp:1014:1: note: declared here
1014 | CDiagContextThreadData::GetProperties(EGetProperties flag)
| ^~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::PrintProperties()':
/<<PKGBUILDDIR>>/c++/src/corelib/ncbidiag.cpp:1988:66: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(EGetProperties)' is deprecated [-Wdeprecated-declarations]
1988 | CDiagContextThreadData::GetThreadData().GetProperties(
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
1989 | CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/corelib/ncbidiag.cpp:1014:1: note: declared here
1014 | CDiagContextThreadData::GetProperties(EGetProperties flag)
| ^~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/corelib/ncbidiag.cpp: In static member function 'static void ncbi::CDiagContext::SetupDiag(ncbi::EAppDiagStream, ncbi::CNcbiRegistry*, ncbi::EDiagCollectMessages, const char*)':
/<<PKGBUILDDIR>>/c++/src/corelib/ncbidiag.cpp:3584:47: warning: 'virtual bool ncbi::CNcbiApplicationAPI::SetupDiag_AppSpecific()' is deprecated [-Wdeprecated-declarations]
3584 | app->SetupDiag_AppSpecific(); /* NCBI_FAKE_WARNING */
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_param.hpp:41,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbifile.hpp:55,
from /<<PKGBUILDDIR>>/c++/src/corelib/ncbidiag.cpp:41:
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp_api.hpp:395:34: note: declared here
395 | NCBI_DEPRECATED virtual bool SetupDiag_AppSpecific(void);
| ^~~~~~~~~~~~~~~~~~~~~
pp.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/corelib/ncbiargs.cpp -o ncbiargs.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/corelib/ncbiatomic.cpp -o ncbiatomic.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include ncbicfg.c -o ncbicfg.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/corelib/ncbidbg.cpp -o ncbidbg.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/corelib/ncbidiag.cpp -o ncbidiag.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/corelib/ncbidiag_p.cpp -o ncbidiag_p.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/corelib/ncbidll.cpp -o ncbidll.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/corelib/ncbienv.cpp -o ncbienv.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/corelib/ncbiexec.cpp -o ncbiexec.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/corelib/ncbiexpt.cpp -o ncbiexpt.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/corelib/ncbifile.cpp -o ncbifile.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/corelib/ncbimempool.cpp -o ncbimempool.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/corelib/ncbimtx.cpp -o ncbimtx.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.s/<<PKGBUILDDIR>>/c++/src/corelib/ncbistr.cpp: In static member function 'static ncbi::SIZE_TYPE ncbi::NStr::DoubleToString_Ecvt(double, unsigned int, char*, ncbi::SIZE_TYPE, int*, int*)':
/<<PKGBUILDDIR>>/c++/src/corelib/ncbistr.cpp:2655:20: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output may be truncated copying between 0 and 15 bytes from a string of length 31 [-Wstringop-truncation]
2655 | strncpy(buffer,digits,digits_len);
| ^
pecs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/corelib/ncbiobj.cpp -o ncbiobj.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/corelib/ncbireg.cpp -o ncbireg.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/corelib/ncbistr.cpp -o ncbistr.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/corelib/ncbistre.cpp -o ncbistre.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/corelib/ncbithr.cpp -o ncbithr.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/corelib/ncbitime.cpp -o ncbitime.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/srcIn file included from /<<PKGBUILDDIR>>/c++/src/corelib/version.cpp:34:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/corelib/version.cpp:448:12: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
448 | : date(__DATE__ " " __TIME__) {
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/corelib/version.cpp:448:25: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
448 | : date(__DATE__ " " __TIME__) {
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/corelib/version.cpp:719:39: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
719 | << NCBI_SBUILDINFO_DEFAULT().date
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/corelib/version.cpp:719:15: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
719 | << NCBI_SBUILDINFO_DEFAULT().date
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/corelib/version.cpp:779:37: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
779 | NCBI_SBUILDINFO_DEFAULT().PrintXml();
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/corelib/version.cpp:779:13: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
779 | NCBI_SBUILDINFO_DEFAULT().PrintXml();
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/corelib/version.cpp:837:65: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
837 | " \"build_info\": " << NCBI_SBUILDINFO_DEFAULT().PrintJson();
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/corelib/version.cpp:837:41: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
837 | " \"build_info\": " << NCBI_SBUILDINFO_DEFAULT().PrintJson();
| ^~~~~~~~~~~~~~~~~~~~~~~
/corelib/obj_store.cpp -o obj_store.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/corelib/plugin_manager.cpp -o plugin_manager.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/corelib/plugin_manager_store.cpp -o plugin_manager_store.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/corelib/rwstreambuf.cpp -o rwstreambuf.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/corelib/stream_utils.cpp -o stream_utils.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/corelib/syslog.cpp -o syslog.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/corelib/version.cpp -o version.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/corelib/request_ctx.cpp -o request_ctx.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/corelib/request_control.cpp -o request_control.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/corelib/expr.cpp -o expr.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/corelib/ncbi_strings.c -o ncbi_strings.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/corelib/resource_info.cpp -o resource_info.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/corelib/interprocess_lock.cpp -o interprocess_lock.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/corelib/ncbi_autoinit.cpp -o ncbi_auIn file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/corelib/ncbi_toolkit.cpp:31:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
toinit.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/corelib/perf_log.cpp -o perf_log.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/corelib/ncbi_toolkit.cpp -o ncbi_toolkit.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/corelib/ncbierror.cpp -o ncbierror.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/corelib/ncbi_url.cpp -o ncbi_url.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/corelib/ncbi_cookies.cpp -o ncbi_cookies.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/corelib/guard.cpp -o guard.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbithr_conf.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimtx.hpp:62,
from /<<PKGBUILDDIR>>/c++/include/corelib/impl/ncbi_dbsvcmapper.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_pool_balancer.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/corelib/ncbi_pool_balancer.cpp:36:
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]',
inlined from 'std::back_insert_iterator<_Container>& std::back_insert_iterator<_Container>::operator=(const typename _Container::value_type&) [with _Container = std::vector<double>]' at /usr/include/c++/12/bits/stl_iterator.h:735:22,
inlined from '_OutputIterator std::partial_sum(_InputIterator, _InputIterator, _OutputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _OutputIterator = back_insert_iterator<vector<double> >]' at /usr/include/c++/12/bits/stl_numeric.h:270:17,
inlined from 'void std::discrete_distribution<_IntType>::param_type::_M_initialize() [with _IntType = int]' at /usr/include/c++/12/bits/random.tcc:2679:23:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]',
inlined from 'std::back_insert_iterator<_Container>& std::back_insert_iterator<_Container>::operator=(const typename _Container::value_type&) [with _Container = std::vector<double>]' at /usr/include/c++/12/bits/stl_iterator.h:735:22,
inlined from '_OutputIterator std::partial_sum(_InputIterator, _InputIterator, _OutputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _OutputIterator = back_insert_iterator<vector<double> >]' at /usr/include/c++/12/bits/stl_numeric.h:274:16,
inlined from 'void std::discrete_distribution<_IntType>::param_type::_M_initialize() [with _IntType = int]' at /usr/include/c++/12/bits/random.tcc:2679:23:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/12/map:60,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:45:
/usr/include/c++/12/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = ncbi::CEndpointKey; _Val = std::pair<const ncbi::CEndpointKey, ncbi::CPoolBalancer::SEndpointInfo>; _KeyOfValue = std::_Select1st<std::pair<const ncbi::CEndpointKey, ncbi::CPoolBalancer::SEndpointInfo> >; _Compare = std::less<ncbi::CEndpointKey>; _Alloc = std::allocator<std::pair<const ncbi::CEndpointKey, ncbi::CPoolBalancer::SEndpointInfo> >]':
/usr/include/c++/12/bits/stl_tree.h:2209:5: note: parameter passing for argument of type 'std::_Rb_tree<ncbi::CEndpointKey, std::pair<const ncbi::CEndpointKey, ncbi::CPoolBalancer::SEndpointInfo>, std::_Select1st<std::pair<const ncbi::CEndpointKey, ncbi::CPoolBalancer::SEndpointInfo> >, std::less<ncbi::CEndpointKey>, std::allocator<std::pair<const ncbi::CEndpointKey, ncbi::CPoolBalancer::SEndpointInfo> > >::const_iterator' changed in GCC 7.1
2209 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {std::pair<ncbi::CEndpointKey, ncbi::CPoolBalancer::SEndpointInfo>}; _Key = ncbi::CEndpointKey; _Val = std::pair<const ncbi::CEndpointKey, ncbi::CPoolBalancer::SEndpointInfo>; _KeyOfValue = std::_Select1st<std::pair<const ncbi::CEndpointKey, ncbi::CPoolBalancer::SEndpointInfo> >; _Compare = std::less<ncbi::CEndpointKey>; _Alloc = std::allocator<std::pair<const ncbi::CEndpointKey, ncbi::CPoolBalancer::SEndpointInfo> >]':
/usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type 'std::_Rb_tree<ncbi::CEndpointKey, std::pair<const ncbi::CEndpointKey, ncbi::CPoolBalancer::SEndpointInfo>, std::_Select1st<std::pair<const ncbi::CEndpointKey, ncbi::CPoolBalancer::SEndpointInfo> >, std::less<ncbi::CEndpointKey>, std::allocator<std::pair<const ncbi::CEndpointKey, ncbi::CPoolBalancer::SEndpointInfo> > >::const_iterator' changed in GCC 7.1
2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/map:61:
In member function 'std::__enable_if_t<std::is_constructible<std::pair<const _Key, _Tp>, _Pair>::value, typename std::_Rb_tree<_Key, std::pair<const _Key, _Tp>, std::_Select1st<std::pair<const _Key, _Tp> >, _Compare, typename __gnu_cxx::__alloc_traits<_Allocator>::rebind<std::pair<const _Key, _Tp> >::other>::iterator> std::map<_Key, _Tp, _Compare, _Alloc>::insert(const_iterator, _Pair&&) [with _Pair = std::pair<ncbi::CEndpointKey, ncbi::CPoolBalancer::SEndpointInfo>; _Key = ncbi::CEndpointKey; _Tp = ncbi::CPoolBalancer::SEndpointInfo; _Compare = std::less<ncbi::CEndpointKey>; _Alloc = std::allocator<std::pair<const ncbi::CEndpointKey, ncbi::CPoolBalancer::SEndpointInfo> >]',
inlined from 'void ncbi::CPoolBalancer::x_InitFromCounts(const TCounts&)' at /<<PKGBUILDDIR>>/c++/src/corelib/ncbi_pool_balancer.cpp:130:37:
/usr/include/c++/12/bits/stl_map.h:925:45: note: parameter passing for argument of type 'std::map<ncbi::CEndpointKey, ncbi::CPoolBalancer::SEndpointInfo>::const_iterator' {aka 'std::_Rb_tree<ncbi::CEndpointKey, std::pair<const ncbi::CEndpointKey, ncbi::CPoolBalancer::SEndpointInfo>, std::_Select1st<std::pair<const ncbi::CEndpointKey, ncbi::CPoolBalancer::SEndpointInfo> >, std::less<ncbi::CEndpointKey>, std::allocator<std::pair<const ncbi::CEndpointKey, ncbi::CPoolBalancer::SEndpointInfo> > >::const_iterator'} changed in GCC 7.1
925 | return _M_t._M_emplace_hint_unique(__position,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
926 | std::forward<_Pair>(__x));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]',
inlined from 'ncbi::TSvrRef ncbi::CPoolBalancer::x_GetServer(const void*, ncbi::IBalanceable**)' at /<<PKGBUILDDIR>>/c++/src/corelib/ncbi_pool_balancer.cpp:242:30:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/corelib/ncbi_message.cpp -o ncbi_message.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/corelib/request_status.cpp -o request_status.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/corelib/ncbi_fast.cpp -o ncbi_fast.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/corelib/ncbi_dbsvcmapper.cpp -o ncbi_dbsvcmapper.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/corelib/ncbi_pool_balancer.cpp -o ncbi_pool_balancer.o
/bin/rm -f libxncbi.so .libxncbi.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libxncbi.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC ncbi_os_unix.o blob_storage.o ddumpable.o env_reg.o metareg.o ncbi_config.o ncbi_param.o ncbi_process.o ncbi_safe_static.o ncbi_signal.o ncbi_stack.o ncbi_system.o ncbiapp.o ncbiargs.o ncbiatomic.o ncbicfg.o ncbidbg.o ncbidiag.o ncbidiag_p.o ncbidll.o ncbienv.o ncbiexec.o ncbiexpt.o ncbifile.o ncbimempool.o ncbimtx.o ncbiobj.o ncbireg.o ncbistr.o ncbistre.o ncbithr.o ncbitime.o obj_store.o plugin_manager.o plugin_manager_store.o rwstreambuf.o stream_utils.o syslog.o version.o request_ctx.o request_control.o expr.o ncbi_strings.o resource_info.o interprocess_lock.o ncbi_autoinit.o perf_log.o ncbi_toolkit.o ncbierror.o ncbi_url.o ncbi_cookies.o guard.o ncbi_message.o request_status.o ncbi_fast.o ncbi_dbsvcmapper.o ncbi_pool_balancer.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxncbi.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libxncbi.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libxncbi.so
/bin/ln -f .xncbi.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.xncbi.dep
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/corelib'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/corelib TMPL=test_mt -w all
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_mt.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/corelib/test_mt.cpp:34:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/corelib'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/corelib/test_mt.cpp -o test_mt.o
/bin/rm -f libtest_mt.so .libtest_mt.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libtest_mt.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC test_mt.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lxncbi -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtest_mt.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libtest_mt.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libtest_mt.so
/bin/ln -f .test_mt.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.test_mt.dep
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/corelib'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/corelib TMPL=test_boost -w all
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/corelib/test_boost.cpp:39:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/corelib'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/corelib/test_boost.cpp -o test_boost.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/corelib/teamcity_messages.cpp -o teamcity_messages.o
/bin/rm -f libtest_boost.so .libtest_boost.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libtest_boost.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC test_boost.o teamcity_messages.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lxncbi -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtest_boost.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libtest_boost.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libtest_boost.so
/bin/ln -f .test_boost.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.test_boost.dep
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/corelib'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/corelib'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/corelib'
make[2]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util'
/usr/bin/make[2] (Makefile.util.lib): Nothing to be done for `export-headers'.
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/util TMPL=util -w all
make[3]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/random_gen.cpp -o random_gen.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/utf8.cpp -o utf8.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/checksum.cpp -o checksum.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/checksum_cityhash.cpp -o checksum_cityhash.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/checksum_farmhash.cpp -o checksum_farmhash.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/bytesrc.cpp -o bytesrc.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FIn file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/util/ddump_viewer.cpp:35:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
ILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/strbuffer.cpp -o strbuffer.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/itree.cpp -o itree.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/smalldns.cpp -o smalldns.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/thread_pool_old.cpp -o thread_pool_old.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/ddump_viewer.cpp -o ddump_viewer.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/strsearch.cpp -o strsearch.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/logrotate.cpp -o logrotate.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -In file included from /usr/include/string.h:535,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/util/format_guess.hpp:35,
from /<<PKGBUILDDIR>>/c++/src/util/format_guess.cpp:33:
In function 'char* strncpy(char*, const char*, size_t)',
inlined from 'bool ncbi::CFormatGuess::TestFormatNewick(EMode)' at /<<PKGBUILDDIR>>/c++/src/util/format_guess.cpp:1099:24:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:95:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' accessing 12 bytes at offsets 0 and [0, 16397] may overlap up to 12 bytes at offset [0, 11] [-Wrestrict]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/format_guess.cpp -o format_guess.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/ascii85.cpp -o ascii85.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/md5.cpp -o md5.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/file_obsolete.cpp -o file_obsolete.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/unicode.cpp -o unicode.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/dictionary.cpp -o dictionary.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/build/ncbi-blast+-In function 'bool ncbi::s_EndsWith(const std::string&, const char*)',
inlined from 'static void ncbi::CDictionaryUtil::Stem(const std::string&, std::string*)' at /<<PKGBUILDDIR>>/c++/src/util/dictionary_util.cpp:842:19:
/<<PKGBUILDDIR>>/c++/src/util/dictionary_util.cpp:709:17: warning: array subscript -1 is outside array bounds of 'const char [4]' [-Warray-bounds]
709 | const char* end2 = p - 1;
| ^~~~
In function 'bool ncbi::s_EndsWith(const std::string&, const char*)',
inlined from 'static void ncbi::CDictionaryUtil::Stem(const std::string&, std::string*)' at /<<PKGBUILDDIR>>/c++/src/util/dictionary_util.cpp:850:30:
/<<PKGBUILDDIR>>/c++/src/util/dictionary_util.cpp:709:17: warning: array subscript -1 is outside array bounds of 'const char [4]' [-Warray-bounds]
709 | const char* end2 = p - 1;
| ^~~~
iztKfv/ncbi-blast+-2.12.0+ds/c++/include /<<PKGBUILDDIR>>/c++/src/util/dictionary_util.cpp -o dictionary_util.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/thread_nonstop.cpp -o thread_nonstop.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/sgml_entity.cpp -o sgml_entity.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/static_set.cpp -o static_set.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/transmissionrw.cpp -o transmissionrw.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/miscmath.c -o miscmath.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/mutex_pool.cpp -o mutex_pool.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/ncbi_cache.cpp -o ncbi_cache.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/line_reader.cpp -o line_reader.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/util_exception.cpp -o util_exception.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/uttp.cpp -o uttp.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/multi_writer.cpp -o multi_writer.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/itransaction.cpp -o itransaction.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/thread_poolIn file included from /usr/include/c++/12/algorithm:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:180,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbictype.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistre.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_stack.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/src/util/histogram_binning.cpp:38:
/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long int, unsigned int>*, vector<pair<long long int, unsigned int> > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<ncbi::{anonymous}::CReverseSort<pair<long long int, unsigned int> > >]':
/usr/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long int, unsigned int>*, std::vector<std::pair<long long int, unsigned int> > >' changed in GCC 7.1
1782 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long int, unsigned int>*, vector<pair<long long int, unsigned int> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<ncbi::{anonymous}::CReverseSort<pair<long long int, unsigned int> > >]':
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long int, unsigned int>*, std::vector<std::pair<long long int, unsigned int> > >' changed in GCC 7.1
1802 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long int, unsigned int>*, std::vector<std::pair<long long int, unsigned int> > >' changed in GCC 7.1
In file included from /usr/include/c++/12/bits/stl_algo.h:60:
/usr/include/c++/12/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long int, unsigned int>*, vector<pair<long long int, unsigned int> > >; _Distance = int; _Tp = pair<long long int, unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<ncbi::{anonymous}::CReverseSort<pair<long long int, unsigned int> > >]':
/usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long int, unsigned int>*, std::vector<std::pair<long long int, unsigned int> > >' changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long int, unsigned int>*, vector<pair<long long int, unsigned int> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<ncbi::{anonymous}::CReverseSort<pair<long long int, unsigned int> > >]':
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long int, unsigned int>*, std::vector<std::pair<long long int, unsigned int> > >' changed in GCC 7.1
1908 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long int, unsigned int>*, std::vector<std::pair<long long int, unsigned int> > >' changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long int, unsigned int>*, std::vector<std::pair<long long int, unsigned int> > >' changed in GCC 7.1
1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44:
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const ncbi::CHistogramBinning::SBin&}; _Tp = ncbi::CHistogramBinning::SBin; _Alloc = std::allocator<ncbi::CHistogramBinning::SBin>]':
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<ncbi::CHistogramBinning::SBin>::iterator' changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair<long long int, unsigned int>}; _Tp = std::pair<long long int, unsigned int>; _Alloc = std::allocator<std::pair<long long int, unsigned int> >]':
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<std::pair<long long int, unsigned int> >::iterator' changed in GCC 7.1
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {ncbi::CHistogramBinning::SBin}; _Tp = ncbi::CHistogramBinning::SBin; _Alloc = std::allocator<ncbi::CHistogramBinning::SBin>]':
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<ncbi::CHistogramBinning::SBin>::iterator' changed in GCC 7.1
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ncbi::CHistogramBinning::SBin}; _Tp = ncbi::CHistogramBinning::SBin; _Alloc = std::allocator<ncbi::CHistogramBinning::SBin>]':
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ncbi::CHistogramBinning::SBin*, std::vector<ncbi::CHistogramBinning::SBin> >' changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ncbi::CHistogramBinning::SBin; _Alloc = std::allocator<ncbi::CHistogramBinning::SBin>]',
inlined from 'ncbi::CHistogramBinning::TListOfBins* ncbi::CHistogramBinning::x_TryForEvenBins() const' at /<<PKGBUILDDIR>>/c++/src/util/histogram_binning.cpp:234:34:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ncbi::CHistogramBinning::SBin*, std::vector<ncbi::CHistogramBinning::SBin> >' changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ncbi::CHistogramBinning::SBin; _Alloc = std::allocator<ncbi::CHistogramBinning::SBin>]',
inlined from 'ncbi::CHistogramBinning::TListOfBins* ncbi::CHistogramBinning::x_TryForEvenBins() const' at /<<PKGBUILDDIR>>/c++/src/util/histogram_binning.cpp:237:34:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ncbi::CHistogramBinning::SBin*, std::vector<ncbi::CHistogramBinning::SBin> >' changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<long long int, unsigned int>}; _Tp = std::pair<long long int, unsigned int>; _Alloc = std::allocator<std::pair<long long int, unsigned int> >]',
inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair<long long int, unsigned int>; _Alloc = std::allocator<std::pair<long long int, unsigned int> >]' at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from 'ncbi::CHistogramBinning::TListOfBins* ncbi::CHistogramBinning::x_IdentifyClusters() const' at /<<PKGBUILDDIR>>/c++/src/util/histogram_binning.cpp:118:38:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long int, unsigned int>*, std::vector<std::pair<long long int, unsigned int> > >' changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long int, unsigned int>*, vector<pair<long long int, unsigned int> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<ncbi::{anonymous}::CReverseSort<pair<long long int, unsigned int> > >]',
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<pair<long long int, unsigned int>*, vector<pair<long long int, unsigned int> > >; _Compare = ncbi::{anonymous}::CReverseSort<pair<long long int, unsigned int> >]' at /usr/include/c++/12/bits/stl_algo.h:4853:18,
inlined from 'ncbi::CHistogramBinning::TListOfBins* ncbi::CHistogramBinning::x_IdentifyClusters() const' at /<<PKGBUILDDIR>>/c++/src/util/histogram_binning.cpp:123:9:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long int, unsigned int>*, std::vector<std::pair<long long int, unsigned int> > >' changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long int, unsigned int>*, vector<pair<long long int, unsigned int> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<ncbi::{anonymous}::CReverseSort<pair<long long int, unsigned int> > >]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long int, unsigned int>*, vector<pair<long long int, unsigned int> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<ncbi::{anonymous}::CReverseSort<pair<long long int, unsigned int> > >]' at /usr/include/c++/12/bits/stl_algo.h:1940:31,
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<pair<long long int, unsigned int>*, vector<pair<long long int, unsigned int> > >; _Compare = ncbi::{anonymous}::CReverseSort<pair<long long int, unsigned int> >]' at /usr/include/c++/12/bits/stl_algo.h:4853:18,
inlined from 'ncbi::CHistogramBinning::TListOfBins* ncbi::CHistogramBinning::x_IdentifyClusters() const' at /<<PKGBUILDDIR>>/c++/src/util/histogram_binning.cpp:123:9:
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long int, unsigned int>*, std::vector<std::pair<long long int, unsigned int> > >' changed in GCC 7.1
1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<long long int, unsigned int>*, std::vector<std::pair<long long int, unsigned int> > >' changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
.cpp -o thread_pool.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/thread_pool_ctrl.cpp -o thread_pool_ctrl.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/scheduler.cpp -o scheduler.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/distribution.cpp -o distribution.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/rangelist.cpp -o rangelist.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/util_misc.cpp -o util_misc.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/histogram_binning.cpp -o histogram_binning.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/table_printer.cpp -o table_printer.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/retry_ctx.cpp -o retry_ctx.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/stream_source.cpp -o stream_source.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/file_manifest.cpp -o file_manifest.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/cache_async.cpp -o cache_async.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/multipattern_search.cpp -o multipattern_search.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/crc32_sse.cpp -o crc32_sse.o
/bin/rm -f libxutil.so .libxutil.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libxutil.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC random_gen.o utf8.o checksum.o checksum_cityhash.o checksum_farmhash.o bytesrc.o strbuffer.o itree.o smalldns.o thread_pool_old.o ddump_viewer.o strsearch.o logrotate.o format_guess.o ascii85.o md5.o file_obsolete.o unicode.o dictionary.o dictionary_util.o thread_nonstop.o sgml_entity.o static_set.o transmissionrw.o miscmath.o mutex_pool.o ncbi_cache.o line_reader.o util_exception.o uttp.o multi_writer.o itransaction.o thread_pool.o thread_pool_ctrl.o scheduler.o distribution.o rangelist.o util_misc.o histogram_binning.o table_printer.o retry_ctx.o stream_source.o file_manifest.o cache_async.o multipattern_search.o crc32_sse.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lxncbi -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxutil.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libxutil.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libxutil.so
/bin/ln -f .xutil.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.xutil.dep
make[3]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util'
make[2]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/regexp'
NOTE: Skipping project regexp due to unmet requirements:
LocalPCRE
make[3]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/regexp'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/util/regexp TMPL=regexp -w mark-as-disabled
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/regexp'
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make[3]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/xregexp'
/usr/bin/make[3] (Makefile.xregexp.lib): Nothing to be done for `export-headers'.
/usr/bin/make[3] (Makefile.xregexp_template_tester.lib): Nothing to be done for `export-headers'.
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/util/xregexp TMPL=xregexp -w all
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/xregexp'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/xregexp/regexp.cpp -o regexp.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/xregexp/arg_regexp.cpp -o arg_regexp.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/xregexp/mask_regexp.cpp -o mask_regexp.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/xregexp/convert_dates_iso8601.cpp -o convert_dates_iso8601.o
/bin/rm -f libxregexp.so .libxregexp.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libxregexp.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC regexp.o arg_regexp.o mask_regexp.o convert_dates_iso8601.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lxncbi -lpcre
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxregexp.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libxregexp.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libxregexp.so
/bin/ln -f .xregexp.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.xregexp.dep
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/xregexp'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/util/xregexp TMPL=xregexp_template_tester -w all
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/xregexp'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/xregexp/regexp_template_tester.cpp -o regexp_template_tester.o
/bin/rm -f libxregexp_template_tester.so .libxregexp_template_tester.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libxregexp_template_tester.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC regexp_template_tester.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lxregexp -lxncbi -lpcre
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxregexp_template_tester.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libxregexp_template_tester.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libxregexp_template_tester.so
/bin/ln -f .xregexp_template_tester.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.xregexp_template_tester.dep
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/xregexp'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/xregexp'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/xregexp'
make[2]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/build-system/project_tree_builder'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder TMPL=project_tree_builder -w all
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/proj_builder_app.hpp:33,
from /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/file_contents.cpp:32:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/proj_builder_app.hpp:33,
from /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/msvc_configure.cpp:32:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/proj_builder_app.hpp:33,
from /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/msvc_makefile.cpp:33:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/proj_builder_app.hpp:33,
from /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/msvc_project_context.hpp:40,
from /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/msvc_prj_generator.hpp:34,
from /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/msvc_masterproject_generator.cpp:31:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/proj_builder_app.hpp:33,
from /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/msvc_project_context.hpp:40,
from /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/msvc_prj_generator.hpp:34,
from /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/msvc_prj_generator.cpp:2:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
make[3]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/build-system/project_tree_builder'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/file_contents.cpp -o file_contents.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/msvc_configure.cpp -o msvc_configure.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/msvc_makefile.cpp -o msvc_makefile.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/msvc_masterproject_generator.cpp -o msvc_masterproject_generator.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/msvc_prj_generator.cpp -o msvc_prj_generator.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/buiIn file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/proj_builder_app.hpp:33,
from /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/msvc_prj_utils.cpp:32:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/proj_builder_app.hpp:33,
from /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/msvc_project_context.hpp:40,
from /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/msvc_project_context.cpp:33:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/proj_builder_app.hpp:33,
from /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/msvc_site.cpp:33:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/proj_builder_app.hpp:33,
from /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/msvc_project_context.hpp:40,
from /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/msvc_sln_generator.hpp:34,
from /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/msvc_sln_generator.cpp:32:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/proj_builder_app.hpp:33,
from /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/proj_builder_app.cpp:31:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/proj_builder_app.hpp:33,
from /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/proj_datatool_generated_src.cpp:33:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
ld/ncbi-blast+-iztKfv/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/msvc_prj_utils.cpp -o msvc_prj_utils.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/msvc_project_context.cpp -o msvc_project_context.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/msvc_site.cpp -o msvc_site.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/msvc_sln_generator.cpp -o msvc_sln_generator.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/proj_builder_app.cpp -o proj_builder_app.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/proj_datatool_generated_src.cpp -o proj_datatool_generated_src.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCIn file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/proj_builder_app.hpp:33,
from /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/proj_tree.cpp:34:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/proj_builder_app.hpp:33,
from /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/proj_tree_builder.cpp:32:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/proj_builder_app.hpp:33,
from /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/proj_src_resolver.cpp:32:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/proj_builder_app.hpp:33,
from /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/resolver.cpp:33:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
E=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/proj_item.cpp -o proj_item.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/proj_tree.cpp -o proj_tree.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/proj_tree_builder.cpp -o proj_tree_builder.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/proj_src_resolver.cpp -o proj_src_resolver.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/proj_utils.cpp -o proj_utils.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/resolver.cpp -o resolver.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILIn file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/proj_builder_app.hpp:33,
from /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/msvc_project_context.hpp:40,
from /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/msvc_prj_generator.hpp:34,
from /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/msvc_configure_prj_generator.cpp:31:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/proj_builder_app.hpp:33,
from /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/proj_projects.cpp:31:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/proj_builder_app.hpp:33,
from /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/msvc_dlls_info.cpp:32:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/proj_builder_app.hpp:33,
from /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/msvc_project_context.hpp:40,
from /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/msvc_prj_files_collector.hpp:35,
from /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/msvc_prj_files_collector.cpp:32:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/proj_builder_app.hpp:33,
from /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/configurable_file.cpp:32:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/proj_builder_app.hpp:33,
from /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/ptb_gui.cpp:31:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
E64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/msvc_configure_prj_generator.cpp -o msvc_configure_prj_generator.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/proj_projects.cpp -o proj_projects.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/msvc_dlls_info.cpp -o msvc_dlls_info.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/msvc_prj_files_collector.cpp -o msvc_prj_files_collector.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/configurable_file.cpp -o configurable_file.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/ptb_gui.cpp -o ptb_gui.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-stroIn file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/proj_builder_app.hpp:33,
from /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/msvc_project_context.hpp:40,
from /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/mac_prj_generator.hpp:34,
from /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/mac_prj_generator.cpp:32:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/proj_builder_app.hpp:33,
from /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/prj_file_collector.cpp:32:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME'
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE'
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL'
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT'
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
ng -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/ptb_registry.cpp -o ptb_registry.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/mac_prj_generator.cpp -o mac_prj_generator.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/prj_file_collector.cpp -o prj_file_collector.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie file_contents.o msvc_configure.o msvc_makefile.o msvc_masterproject_generator.o msvc_prj_generator.o msvc_prj_utils.o msvc_project_context.o msvc_site.o msvc_sln_generator.o proj_builder_app.o proj_datatool_generated_src.o proj_item.o proj_tree.o proj_tree_builder.o proj_src_resolver.o proj_utils.o resolver.o msvc_configure_prj_generator.o proj_projects.o msvc_dlls_info.o msvc_prj_files_collector.o configurable_file.o ptb_gui.o ptb_registry.o mac_prj_generator.o prj_file_collector.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lxutil -lxncbi -lxregexp -lpcre -lm -lpthread -o project_tree_builder
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f project_tree_builder /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f project_tree_builder /<<PKGBUILDDIR>>/c++/BUILD/bin/project_tree_builder
make[3]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/build-system/project_tree_builder'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/build-system/project_tree_builder'
**********************************************************************
Running project_tree_builder. Please wait.
**********************************************************************
./build-system/project_tree_builder/project_tree_builder -dll -dtdep -conffile /<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder.ini -logfile Flat.configuration_log /<<PKGBUILDDIR>>/c++ src Makefile.flat
Done
===============================================================================
NCBI C++ Toolkit documentation:
Online: http://www.ncbi.nlm.nih.gov/toolkit/doc/book/
Local: ./doc/public/index.html
For the available configuration flags run: ./configure --help
CFLAGS = -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC
CXXFLAGS = -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC
CPPFLAGS = -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE
LDFLAGS = -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2
LIBRARIES: build as dynamic by default
FEATURES: PSGLoader GCC MT LFS DLL DLL_BUILD unix WinMain Linux
PACKAGES:
enabled: Iconv Z BZ2 PCRE MBEDTLS GMP GMP NETTLE NETTLE Boost.Spirit Boost.Test.Included LMDB
disabled: UUID FUSE LIBUNWIND LIBDW BACKWARD_CPP LocalZ LocalBZ2 LZO ZSTD LocalPCRE GCRYPT GNUTLS OPENSSL KRB5 CURL Sybase DBLib FreeTDS MySQL BerkeleyDB BerkeleyDB++ ODBC PYTHON PYTHON25 PYTHON26 PYTHON27 PYTHON3 PERL Boost.Chrono Boost.Filesystem Boost.Iostreams Boost.Program-Options Boost.Regex Boost.Serialization Boost.System Boost.Test Boost.Thread C-Toolkit OpenGL MESA GLUT GLEW wxWidgets wx2.8 Fast-CGI LocalSSS LocalMSGMAIL2 SSSUTILS LocalNCBILS NCBILS2 SSSDB SP ORBacus ICU EXPAT SABLOT LIBXML LIBXSLT LIBEXSLT Xerces Xalan Zorba SQLITE3 SQLITE3ASYNC VDB NGS OECHEM SGE MUPARSER HDF5 JPEG PNG TIFF GIF UNGIF XPM GL2PS FreeType FTGL MAGIC MIMETIC GSOAP AVRO Cereal SASL2 MONGODB MONGODB3 LEVELDB GMOCK LAPACK LocalLMDB LIBUV LIBSSH2 CASSANDRA NGHTTP2 H2O INFLUXDB LIBXLSXWRITER PROTOBUF GRPC MSGSL AWS_SDK HIREDIS APACHE_ARROW LIBRDKAFKA CPPKAFKA
PROJECTS:
enabled: cgi serial objects app algo
disabled: local_lbsm connext ncbi_crypt bdb dbapi ctools gui gbench
Tools / flags / paths: /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.mk
Configuration header: /<<PKGBUILDDIR>>/c++/BUILD/inc/ncbiconf_unix.h
To build everything: cd /<<PKGBUILDDIR>>/c++/BUILD/build && /usr/bin/make all_r
or simply run /usr/bin/make in the current directory
Alternatively, cd /<<PKGBUILDDIR>>/c++/BUILD/build && /usr/bin/make -f Makefile.flat
******* CONFIGURATION SUCCESSFUL *******
configure: WARNING: unrecognized options: --without-dbapi
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_auto_build-arch
make[1]: Entering directory '/<<PKGBUILDDIR>>'
cd c++/BUILD/build && \
make -j4 -f Makefile.flat all_projects="algo/blast/ app/ objmgr/ objtools/align_format/ objtools/blast/"
make[2]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build'
/usr/bin/make -w -j4 --jobserver-auth=3,4 -f Makefile.flat ptb_all.real MTARGET=
make[3]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build'
make[3]: warning: -j4 forced in submake: resetting jobserver mode.
cd corelib/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
cd util/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
cd serial/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
cd serial/datatool/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/corelib'
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/serial'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/serial/datatool'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: Nothing to be done for 'sources'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/serial/datatool'
cd algo/blast/composition_adjustment/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/composition_adjustment'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/serial'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/serial'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/serial'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/corelib'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/serial'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/composition_adjustment'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make[4] (Makefile.serial.lib): Nothing to be done for `export-headers'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/composition_adjustment'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/serial'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/composition_adjustment'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make[4] (Makefile.util.lib): Nothing to be done for `export-headers'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util'
cd util/tables/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/serial'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/composition_adjustment'
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/tables'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/serial'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/serial'
/usr/bin/make[4] (Makefile.composition_adjustment.lib): Nothing to be done for `export-headers'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/composition_adjustment'
cd connect/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/corelib'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make[4] (Makefile.cserial.lib): Nothing to be done for `export-headers'.
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/corelib'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/tables'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/corelib'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/tables'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/corelib'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/tables'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/tables'
/usr/bin/make[5] (Makefile.precompile): Nothing to be done for `all'.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect'
/usr/bin/make[4] (Makefile.tables.lib): Nothing to be done for `export-headers'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/tables'
cd algo/blast/core/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/core'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/corelib'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/corelib'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make[4] (Makefile.connssl.lib): Nothing to be done for `export-headers'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/corelib'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/core'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/corelib'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/core'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/corelib'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/core'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/core'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect'
/usr/bin/make[4] (Makefile.corelib.lib): Nothing to be done for `export-headers'.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/corelib'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make[4] (Makefile.blast.lib): Nothing to be done for `export-headers'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/core'
cd util/sequtil/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/corelib'
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/sequtil'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make[4] (Makefile.connect.lib): Nothing to be done for `export-headers'.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/corelib'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/corelib'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect'
/usr/bin/make[4] (Makefile.test_mt.lib): Nothing to be done for `export-headers'.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/sequtil'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/sequtil'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/corelib'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/sequtil'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/corelib'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/sequtil'
/usr/bin/make[4] (Makefile.xxconnect.lib): Nothing to be done for `export-headers'.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/corelib'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/corelib'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make[4] (Makefile.sequtil.lib): Nothing to be done for `export-headers'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/sequtil'
cd objtools/blast/services/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect'
/usr/bin/make[4] (Makefile.test_boost.lib): Nothing to be done for `export-headers'.
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/services'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make[4] (Makefile.xconnect.lib): Nothing to be done for `export-headers'.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/services'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/services'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/services'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/services'
make[5]: *** No rule to make target '/<<PKGBUILDDIR>>/c++/BUILD/status/LIBUV.enabled', needed by 'requirements'. Stop.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect'
NOTE: skipping project "xxconnect2" due to unmet requirements
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make[4] (Makefile.blast_services.lib): Nothing to be done for `export-headers'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/services'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect'
cd objmgr/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objmgr'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objmgr'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objmgr'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objmgr'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/serial'
cd objtools/blast/seqdb_reader/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
/usr/bin/make[4] (Makefile.xthrserv.lib): Nothing to be done for `export-headers'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objmgr'
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_reader'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make[4] (Makefile.objmgr.lib): Nothing to be done for `export-headers'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objmgr'
cd objtools/logging/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/logging'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_reader'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_reader'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/corelib'
cd objtools/readers/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_reader'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/readers'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_reader'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/logging'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make[4] (Makefile.seqdb.lib): Nothing to be done for `export-headers'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_reader'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/logging'
cd objmgr/util/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/readers'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/logging'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objmgr/util'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/logging'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/readers'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/readers'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/readers'
/usr/bin/make[4] (Makefile.logging.lib): Nothing to be done for `export-headers'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/logging'
cd objtools/seqmasks_io/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/seqmasks_io'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objmgr/util'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make[4] (Makefile.xobjread.lib): Nothing to be done for `export-headers'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objmgr/util'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objmgr/util'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/readers'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objmgr/util'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/readers'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/readers'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/seqmasks_io'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/readers'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/seqmasks_io'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/seqmasks_io'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make[4] (Makefile.util.lib): Nothing to be done for `export-headers'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objmgr/util'
cd util/profile/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/seqmasks_io'
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/profile'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make[4] (Makefile.xobjreadex.lib): Nothing to be done for `export-headers'.
/usr/bin/make[4] (Makefile.seqmasks_io.lib): Nothing to be done for `export-headers'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/seqmasks_io'
cd algo/blast/dbindex/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/dbindex'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/profile'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/profile'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/profile'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/profile'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/dbindex'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/dbindex'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/dbindex'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make[4] (Makefile.utrtprof.lib): Nothing to be done for `export-headers'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/profile'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/dbindex'
cd algo/dustmask/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/dustmask'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/readers'
cd algo/winmask/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/winmask'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make[4] (Makefile.xalgoblastdbindex.lib): Nothing to be done for `export-headers'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/dbindex'
cd objtools/alnmgr/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/alnmgr'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/dustmask'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/dustmask'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect'
cd algo/blast/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/winmask'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/api'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/dustmask'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/winmask'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/dustmask'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/winmask'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/alnmgr'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/winmask'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/alnmgr'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/alnmgr'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/alnmgr'
/usr/bin/make[4] (Makefile.xalgodustmask.lib): Nothing to be done for `export-headers'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/dustmask'
cd objtools/blast/gene_info_reader/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
/usr/bin/make[4] (Makefile.xalgowinmask.lib): Nothing to be done for `export-headers'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/winmask'
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/gene_info_reader'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
cd util/compress/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/compress/api'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/api'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make[4] (Makefile.alnmgr.lib): Nothing to be done for `export-headers'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/alnmgr'
cd objtools/data_loaders/genbank/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/api'
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/gene_info_reader'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/compress/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/gene_info_reader'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/compress/api'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/gene_info_reader'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/compress/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/gene_info_reader'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/compress/api'
/usr/bin/make[4] (Makefile.xblast.lib): Nothing to be done for `export-headers'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/api'
cd objtools/data_loaders/genbank/cache/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank/cache'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank'
/usr/bin/make[4] (Makefile.compress.lib): Nothing to be done for `export-headers'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/compress/api'
cd objtools/data_loaders/genbank/id1/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make[4] (Makefile.gene_info.lib): Nothing to be done for `export-headers'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/gene_info_reader'
cd objtools/data_loaders/genbank/id2/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank/id1'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank/id2'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank/cache'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank/cache'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank/id1'
/usr/bin/make[4] (Makefile.ncbi_xreader.lib): Nothing to be done for `export-headers'.
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank/cache'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank/id2'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank/id1'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank/cache'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank/id1'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank/id2'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank/id2'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank/id1'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank/id2'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank'
/usr/bin/make[4] (Makefile.ncbi_xreader_cache.lib): Nothing to be done for `export-headers'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank/cache'
cd cgi/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/cgi'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make[4] (Makefile.ncbi_xreader_id1.lib): Nothing to be done for `export-headers'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank/id1'
cd html/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/html'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make[4] (Makefile.ncbi_xreader_id2.lib): Nothing to be done for `export-headers'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank/id2'
cd objtools/align_format/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
/usr/bin/make[4] (Makefile.ncbi_xloader_genbank.lib): Nothing to be done for `export-headers'.
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/align_format'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/cgi'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/cgi'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/cgi'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/html'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/html'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/cgi'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/align_format'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/html'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/align_format'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/html'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/align_format'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make[4] (Makefile.cgi.lib): Nothing to be done for `export-headers'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/align_format'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/cgi'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make[4] (Makefile.html.lib): Nothing to be done for `export-headers'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/html'
cd objtools/blast/blastdb_format/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/cgi'
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/blastdb_format'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make[4] (Makefile.align_format.lib): Nothing to be done for `export-headers'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/align_format'
cd objtools/data_loaders/blastdb/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/cgi'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/blastdb'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/cgi'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank'
cd algo/blast/blastinput/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/blastinput'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make[4] (Makefile.fcgi.lib): Nothing to be done for `export-headers'.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/blastdb_format'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/blastdb_format'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/blastdb'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/blastdb_format'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/blastdb'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/blastdb_format'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/blastdb'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/blastdb'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/blastinput'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/blastinput'
/usr/bin/make[4] (Makefile.blastdb_format.lib): Nothing to be done for `export-headers'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/blastdb_format'
cd objtools/eutils/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/blastinput'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/blastinput'
/usr/bin/make[4] (Makefile.ncbi_xloader_blastdb.lib): Nothing to be done for `export-headers'.
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/api'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/blastdb'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/blastdb'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/blastdb'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/blastdb'
/usr/bin/make[4] (Makefile.blastinput.lib): Nothing to be done for `export-headers'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/blastinput'
cd algo/blast/proteinkmer/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/proteinkmer'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/api'
/usr/bin/make[4] (Makefile.ncbi_xloader_blastdb_rmt.lib): Nothing to be done for `export-headers'.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/api'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/proteinkmer'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/proteinkmer'
/usr/bin/make[4] (Makefile.eutils.lib): Nothing to be done for `export-headers'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/api'
cd connect/services/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/proteinkmer'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect/services'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/proteinkmer'
/usr/bin/make[4] (Makefile.proteinkmer.lib): Nothing to be done for `export-headers'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/proteinkmer'
cd objtools/pubseq_gateway/client/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/cgi'
cd util/xregexp/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect/services'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/pubseq_gateway/client'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/xregexp'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect/services'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect/services'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect/services'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/blastdb'
cd objtools/edit/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/pubseq_gateway/client'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/xregexp'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make[4] (Makefile.xconnserv.lib): Nothing to be done for `export-headers'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/pubseq_gateway/client'
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/edit'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/pubseq_gateway/client'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/xregexp'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect/services'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: *** No rule to make target '/<<PKGBUILDDIR>>/c++/BUILD/status/LIBUV.enabled', needed by 'requirements'. Stop.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/pubseq_gateway/client'
NOTE: skipping project "psg_client" due to unmet requirements
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/xregexp'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/pubseq_gateway/client'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect/services'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/xregexp'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect/services'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/pubseq_gateway/client'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/pubseq_gateway/client'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect/services'
cd objtools/cleanup/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/cleanup'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/edit'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/edit'
/usr/bin/make[4] (Makefile.xregexp.lib): Nothing to be done for `export-headers'.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/edit'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make[4] (Makefile.ncbi_xcache_netcache.lib): Nothing to be done for `export-headers'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/edit'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/xregexp'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect/services'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/xregexp'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/cleanup'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/xregexp'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect/services'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/cleanup'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/xregexp'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect/services'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/cleanup'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make[4] (Makefile.edit.lib): Nothing to be done for `export-headers'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/edit'
cd objtools/format/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect/services'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/cleanup'
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/format'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make[4] (Makefile.xregexp_template_tester.lib): Nothing to be done for `export-headers'.
/usr/bin/make[4] (Makefile.ncbi_xblobstorage_netcache.lib): Nothing to be done for `export-headers'.
/usr/bin/make[4] (Makefile.cleanup.lib): Nothing to be done for `export-headers'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/cleanup'
cd algo/blast/format/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/format'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/format'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/format'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/format'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/format'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/format'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/format'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/format'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/format'
/usr/bin/make[4] (Makefile.xformat.lib): Nothing to be done for `export-headers'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/format'
cd algo/blast/blastinput/unit_test/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/blastinput/unit_test'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make[4] (Makefile.xblastformat.lib): Nothing to be done for `export-headers'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/format'
cd algo/blast/dbindex/makeindex/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/xregexp'
make[4]: Nothing to be done for 'sources'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/blastinput/unit_test'
cd algo/blast/igblast/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/dbindex/makeindex'
cd objtools/simple/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/igblast'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/simple'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: Nothing to be done for 'sources'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/dbindex/makeindex'
cd algo/blast/proteinkmer/unit_test/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect/services'
cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/igblast'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/proteinkmer/unit_test'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/igblast'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/simple'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/igblast'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/simple'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/igblast'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/simple'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: Nothing to be done for 'sources'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/proteinkmer/unit_test'
cd algo/blast/unit_tests/blast_format/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/simple'
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/blast_format'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make[4] (Makefile.xobjsimple.lib): Nothing to be done for `export-headers'.
/usr/bin/make[4] (Makefile.igblast.lib): Nothing to be done for `export-headers'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/simple'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/igblast'
cd algo/blast/unit_tests/blastdb/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
cd objtools/blast/seqdb_writer/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/blastdb'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: Nothing to be done for 'sources'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/blast_format'
cd algo/blast/unit_tests/seqdb_reader/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_writer'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: Nothing to be done for 'sources'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/blastdb'
cd app/blast/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
/usr/bin/make[4] (Makefile.blast_unit_test_util.lib): Nothing to be done for `export-headers'.
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_writer'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_writer'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_writer'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_writer'
/usr/bin/make[4] (Makefile.seqalign_util.lib): Nothing to be done for `export-headers'.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make[4] (Makefile.writedb.lib): Nothing to be done for `export-headers'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_writer'
cd app/blastdb/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader'
cd app/dustmasker/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/dustmasker'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/src/app/blast/Makefile.legacy_blast builddir=/<<PKGBUILDDIR>>/c++/BUILD/build srcdir=/<<PKGBUILDDIR>>/c++/src/app/blast -w -j4 --jobserver-auth=9,10 all
make[4]: Nothing to be done for 'sources'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/dustmasker'
cd algo/segmask/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/segmask'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/segmask'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/segmask'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/segmask'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/segmask'
/usr/bin/make[4] (Makefile.xalgosegmask.lib): Nothing to be done for `export-headers'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/segmask'
cd app/segmasker/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f /<<PKGBUILDDIR>>/c++/src/app/blast/legacy_blast.pl /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f /<<PKGBUILDDIR>>/c++/src/app/blast/legacy_blast.pl /<<PKGBUILDDIR>>/c++/BUILD/bin/legacy_blast.pl
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/segmasker'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[4]: Nothing to be done for 'sources'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/segmasker'
cd app/winmasker/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/winmasker'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/src/app/blast/Makefile.update_blastdb builddir=/<<PKGBUILDDIR>>/c++/BUILD/build srcdir=/<<PKGBUILDDIR>>/c++/src/app/blast -w -j4 --jobserver-auth=9,10 all
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/winmasker'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f /<<PKGBUILDDIR>>/c++/src/app/blast/update_blastdb.pl /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f /<<PKGBUILDDIR>>/c++/src/app/blast/update_blastdb.pl /<<PKGBUILDDIR>>/c++/BUILD/bin/update_blastdb.pl
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/winmasker'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/winmasker'
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/winmasker'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/winmasker'
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/src/app/winmasker/Makefile.windowmasker_2.2.22_adapter builddir=/<<PKGBUILDDIR>>/c++/BUILD/build srcdir=/<<PKGBUILDDIR>>/c++/src/app/winmasker -w -j4 --jobserver-auth=9,10 all
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/src/app/blast/Makefile.get_species_taxids builddir=/<<PKGBUILDDIR>>/c++/BUILD/build srcdir=/<<PKGBUILDDIR>>/c++/src/app/blast -w -j4 --jobserver-auth=9,10 all
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/winmasker'
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f /<<PKGBUILDDIR>>/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f /<<PKGBUILDDIR>>/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /<<PKGBUILDDIR>>/c++/BUILD/bin/windowmasker_2.2.22_adapter.py
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/winmasker'
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f /<<PKGBUILDDIR>>/c++/src/app/blast/get_species_taxids.sh /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f /<<PKGBUILDDIR>>/c++/src/app/blast/get_species_taxids.sh /<<PKGBUILDDIR>>/c++/BUILD/bin/get_species_taxids.sh
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/winmasker'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
cd objmgr/split/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/winmasker'
cd objtools/align_format/unit_test/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/align_format/unit_test'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objmgr/split'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/src/app/blast/Makefile.cleanup-blastdb-volumes builddir=/<<PKGBUILDDIR>>/c++/BUILD/build srcdir=/<<PKGBUILDDIR>>/c++/src/app/blast -w -j4 --jobserver-auth=9,10 all
make[4]: Nothing to be done for 'sources'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/align_format/unit_test'
cd objtools/blast/blastdb_format/unit_test/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/blastdb_format/unit_test'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objmgr/split'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objmgr/split'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objmgr/split'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: Nothing to be done for 'sources'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/blastdb_format/unit_test'
cd objtools/blast/gene_info_reader/demo/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/gene_info_reader/demo'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objmgr/split'
make[4]: Nothing to be done for 'sources'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/gene_info_reader/demo'
cd objtools/blast/gene_info_reader/unit_test/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
/usr/bin/make[4] (Makefile.id2_split.lib): Nothing to be done for `export-headers'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objmgr/split'
cd objtools/blast/seqdb_reader/demo/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_reader/demo'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f /<<PKGBUILDDIR>>/c++/src/app/blast/cleanup-blastdb-volumes.py /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f /<<PKGBUILDDIR>>/c++/src/app/blast/cleanup-blastdb-volumes.py /<<PKGBUILDDIR>>/c++/BUILD/bin/cleanup-blastdb-volumes.py
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[4]: Nothing to be done for 'sources'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test'
cd objtools/blast/seqdb_reader/test/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_reader/test'
make[4]: Nothing to be done for 'sources'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_reader/demo'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
cd objtools/blast/seqdb_writer/unit_test/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[4]: Nothing to be done for 'sources'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_reader/test'
cd objtools/blast/services/unit_test/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/services/unit_test'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: Nothing to be done for 'sources'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/services/unit_test'
cd corelib/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=corelib UNIX_PROJ="" sources= configurables=configurables.null
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/corelib'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make[4] (Makefile.blast_app_util.lib): Nothing to be done for `export-headers'.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/corelib'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/corelib'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test'
cd algo/blast/composition_adjustment/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=composition_adjustment UNIX_PROJ="" sources= configurables=configurables.null
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/corelib'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/composition_adjustment'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/corelib'
/usr/bin/make[4] (Makefile.corelib.lib): Nothing to be done for `all'.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/composition_adjustment'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/corelib'
cd util/tables/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=tables UNIX_PROJ="" sources= configurables=configurables.null
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/composition_adjustment'
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/tables'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/composition_adjustment'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/composition_adjustment'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/blast/composition_adjustment TMPL=composition_adjustment -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/tables'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/tables'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/tables'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/tables'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/util/tables TMPL=tables -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
/<<PKGBUILDDIR>>/c++/src/algo/blast/composition_adjustment/compo_heap.c:137:1: warning: ‘s_CompoHeapIsValid’ defined but not used [-Wunused-function]
137 | s_CompoHeapIsValid(BlastCompo_HeapRecord * heapArray, int i, int n)
| ^~~~~~~~~~~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/composition_adjustment'
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/composition_adjustment/compo_heap.c -o compo_heap.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/composition_adjustment/compo_mode_condition.c -o compo_mode_condition.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/composition_adjustment/composition_adjustment.c -o composition_adjustment.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/composition_adjustment/matrix_frequency_data.c -o matrix_frequency_data.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/composition_adjustment/nlm_linear_algebra.c -o nlm_linear_algebra.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<BUILDDIR>>/ncb/<<PKGBUILDDIR>>/c++/src/algo/blast/composition_adjustment/redo_alignment.c:200:1: warning: ‘s_DistinctAlignmentsLength’ defined but not used [-Wunused-function]
200 | s_DistinctAlignmentsLength(BlastCompo_Alignment * list)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/composition_adjustment/redo_alignment.c:185:1: warning: ‘s_AlignmentsAreSorted’ defined but not used [-Wunused-function]
185 | s_AlignmentsAreSorted(BlastCompo_Alignment * alignments)
| ^~~~~~~~~~~~~~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/tables'
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/tables/raw_scoremat.c -o raw_scoremat.o
/bin/rm -f libtables.so .libtables.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libtables.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC raw_scoremat.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtables.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libtables.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libtables.so
/bin/ln -f .tables.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.tables.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/tables'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/tables'
cd connect/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xconnect UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/connect TMPL=xconnect -w -j4 --jobserver-auth=7,8 all
/<<PKGBUILDDIR>>/c++/BUILD/bin/run_with_lock: Adjusting base from make_xconnect to make__connect_common per /<<PKGBUILDDIR>>/c++/src/connect/.#lock-map.
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_servicep.h:38,
from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbsmd.h:37,
from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbsmd_stub.c:33:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of ‘int’ [-Wpedantic]
91 | fSERV_IncludePrivate = 0x80000000,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of ‘int’ [-Wpedantic]
92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */
| ^~~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect'
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbsmd_stub.c -o ncbi_lbsmd_stub.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/ncbi_ansi_ext.c -o ncbi_ansi_ext.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/ncbi_types.c -o ncbi_types.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/ncbi_core.c -o ncbi_core.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.c -o ncbi_priv.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/ncbi_util.c -o ncbi_util.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2In file included from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:62,
from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_util.c:34:
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_util.c: In function ‘CORE_SetLOGFILE_NAME_Ex’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_util.c:153:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’
153 | CORE_LOGF_ERRNO_X(1, eLOG_Error, errno,
| ^~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:76:
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connssl.h:48:25: warning: ISO C restricts enumerator values to range of ‘int’ [-Wpedantic]
48 | eNcbiCred_MbedTls = 0xC12CC114
| ^~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:62,
from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_connector.c:34:
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connector.c: In function ‘METACONN_Remove’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connector.c:41:5: note: in expansion of macro ‘CORE_LOGF_X’
41 | CORE_LOGF_X(subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connector.c:63:13: note: in expansion of macro ‘METACONN_LOG’
63 | METACONN_LOG(34, eLOG_Error,
| ^~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connector.c: In function ‘METACONN_Insert’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connector.c:41:5: note: in expansion of macro ‘CORE_LOGF_X’
41 | CORE_LOGF_X(subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connector.c:92:9: note: in expansion of macro ‘METACONN_LOG’
92 | METACONN_LOG(33, connector->next ? eLOG_Error : eLOG_Critical,
| ^~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:62,
from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_once.h:40,
from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:77:
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c: In function ‘s_DoLog’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:530:9: note: in expansion of macro ‘CORE_LOGF_X’
530 | CORE_LOGF_X(112, level,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:247:5: note: in expansion of macro ‘DO_CORE_LOG_X’
247 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, data, size)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:199:5: note: in expansion of macro ‘DO_CORE_LOG_DATA’
199 | DO_CORE_LOG_DATA(NCBI_C_ERRCODE_X, subcode, level, data, size, \
| ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:569:9: note: in expansion of macro ‘CORE_DATAF_X’
569 | CORE_DATAF_X(109, level, data, size,
| ^~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:601:9: note: in expansion of macro ‘CORE_LOGF_X’
601 | CORE_LOGF_X(113, level,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:609:9: note: in expansion of macro ‘CORE_LOGF_X’
609 | CORE_LOGF_X(1, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c: In function ‘s_InitAPI_’:
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:902:32: warning: format ‘%p’ expects argument of type ‘void *’, but argument 3 has type ‘FSSLSetup’ {aka ‘const struct SOCKSSL_struct * (*)(void)’} [-Wformat=]
902 | sprintf(buf, "%p()", s_SSLSetup);
| ~^ ~~~~~~~~~~
| | |
| | FSSLSetup {aka const struct SOCKSSL_struct * (*)(void)}
| void *
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro ‘DO_CORE_LOG’
159 | DO_CORE_LOG(0, 0, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:906:13: note: in expansion of macro ‘CORE_LOGF’
906 | CORE_LOGF(eLOG_Critical,
| ^~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’
155 | DO_CORE_LOG(0, 0, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:914:13: note: in expansion of macro ‘CORE_LOG’
914 | CORE_LOG(eLOG_Critical, "Secure Socket Layer (SSL) has not"
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c: In function ‘s_gethostname’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
179 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:1069:13: note: in expansion of macro ‘CORE_LOG_ERRNO_EXX’
1069 | CORE_LOG_ERRNO_EXX(103, eLOG_Error,
| ^~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:1078:13: note: in expansion of macro ‘CORE_LOGF_X’
1078 | CORE_LOGF_X(104, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c: In function ‘s_gethostbyname_’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:1259:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’
1259 | CORE_LOGF_ERRNO_EXX(106, eLOG_Warning,
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c: In function ‘s_getlocalhostaddress’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:1298:9: note: in expansion of macro ‘CORE_LOGF_X’
1298 | CORE_LOGF_X(9, reget == eDefault ? eLOG_Warning : eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c: In function ‘s_gethostbyname’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:1328:9: note: in expansion of macro ‘CORE_LOGF_X’
1328 | CORE_LOGF_X(155, eLOG_Warning,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c: In function ‘s_gethostbyaddr_’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:1460:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’
1460 | CORE_LOGF_ERRNO_EXX(108, eLOG_Warning,
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c: In function ‘s_gethostbyaddr’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:1494:9: note: in expansion of macro ‘CORE_LOGF_X’
1494 | CORE_LOGF_X(10, eLOG_Warning,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c: In function ‘x_TryLowerSockFileno’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:1628:13: note: in expansion of macro ‘CORE_LOGF_X’
1628 | CORE_LOGF_X(111, eLOG_Trace,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c: In function ‘s_Select_’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:1753:21: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’
1753 | CORE_LOGF_ERRNO_X(145, eLOG_Error, errno,
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:1882:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’
1882 | CORE_LOGF_ERRNO_EXX(5, eLOG_Warning,
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c: In function ‘s_Poll_’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:2026:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’
2026 | CORE_LOGF_ERRNO_X(146, eLOG_Critical, errno,
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:2171:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’
2171 | CORE_LOGF_ERRNO_EXX(147, ready ? eLOG_Warning : eLOG_Error,
| ^~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:62,
from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:34:
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c: In function ‘x_ReInit’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro ‘CORE_LOGF_X’
71 | CORE_LOGF_X(subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:82:39: note: in expansion of macro ‘CONN_LOG_EX’
82 | #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status)
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:282:13: note: in expansion of macro ‘CONN_LOG’
282 | CONN_LOG(4, ReInit, eLOG_Critical, "Partial re-init not allowed");
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro ‘CORE_LOGF_X’
71 | CORE_LOGF_X(subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:82:39: note: in expansion of macro ‘CONN_LOG_EX’
82 | #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status)
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:311:21: note: in expansion of macro ‘CONN_LOG’
311 | CONN_LOG(3, Close,
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro ‘CORE_LOGF_X’
71 | CORE_LOGF_X(subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:82:39: note: in expansion of macro ‘CONN_LOG_EX’
82 | #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status)
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:315:21: note: in expansion of macro ‘CONN_LOG’
315 | CONN_LOG(3, ReInit, eLOG_Error,
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c: In function ‘s_Open’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro ‘CORE_LOGF_X’
71 | CORE_LOGF_X(subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:82:39: note: in expansion of macro ‘CONN_LOG_EX’
82 | #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status)
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:394:9: note: in expansion of macro ‘CONN_LOG’
394 | CONN_LOG(5, Open, eLOG_Error, "Failed to open connection");
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c: In function ‘CONN_CreateEx’:
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c: In function ‘s_IsConnected_’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro ‘CORE_LOGF_X’
71 | CORE_LOGF_X(subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:82:39: note: in expansion of macro ‘CONN_LOG_EX’
82 | #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status)
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:436:9: note: in expansion of macro ‘CONN_LOG’
436 | CONN_LOG(2, Create, eLOG_Error, "NULL connector");
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c: In function ‘CONN_ReInit’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro ‘CORE_LOGF_X’
71 | CORE_LOGF_X(subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:105:11: note: in expansion of macro ‘CONN_LOG_EX’
105 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’
118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg)
| ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:458:5: note: in expansion of macro ‘CONN_NOT_NULL’
458 | CONN_NOT_NULL(1, ReInit);
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro ‘CORE_LOGF_X’
71 | CORE_LOGF_X(subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:112:11: note: in expansion of macro ‘CONN_LOG_EX’
112 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’
118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg)
| ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:458:5: note: in expansion of macro ‘CONN_NOT_NULL’
458 | CONN_NOT_NULL(1, ReInit);
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro ‘DO_CORE_LOG’
159 | DO_CORE_LOG(0, 0, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:2747:13: note: in expansion of macro ‘CORE_LOGF’
2747 | CORE_LOGF(eLOG_Trace,
| ^~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c: In function ‘CONN_GetType’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro ‘CORE_LOGF_X’
71 | CORE_LOGF_X(subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:105:11: note: in expansion of macro ‘CONN_LOG_EX’
105 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:466:5: note: in expansion of macro ‘CONN_NOT_NULL_EX’
466 | CONN_NOT_NULL_EX(6, GetType, 0);
| ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro ‘CORE_LOGF_X’
71 | CORE_LOGF_X(subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:112:11: note: in expansion of macro ‘CONN_LOG_EX’
112 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:466:5: note: in expansion of macro ‘CONN_NOT_NULL_EX’
466 | CONN_NOT_NULL_EX(6, GetType, 0);
| ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c: In function ‘CONN_Description’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro ‘CORE_LOGF_X’
71 | CORE_LOGF_X(subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:105:11: note: in expansion of macro ‘CONN_LOG_EX’
105 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:475:5: note: in expansion of macro ‘CONN_NOT_NULL_EX’
475 | CONN_NOT_NULL_EX(7, Description, 0);
| ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro ‘CORE_LOGF_X’
71 | CORE_LOGF_X(subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:112:11: note: in expansion of macro ‘CONN_LOG_EX’
112 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:475:5: note: in expansion of macro ‘CONN_NOT_NULL_EX’
475 | CONN_NOT_NULL_EX(7, Description, 0);
| ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:2757:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’
2757 | CORE_LOGF_ERRNO_EXX(6, eLOG_Trace,
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c: In function ‘CONN_GetPosition’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro ‘CORE_LOGF_X’
71 | CORE_LOGF_X(subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:105:11: note: in expansion of macro ‘CONN_LOG_EX’
105 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:487:5: note: in expansion of macro ‘CONN_NOT_NULL_EX’
487 | CONN_NOT_NULL_EX(30, GetPosition, 0);
| ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro ‘CORE_LOGF_X’
71 | CORE_LOGF_X(subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:112:11: note: in expansion of macro ‘CONN_LOG_EX’
112 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:487:5: note: in expansion of macro ‘CONN_NOT_NULL_EX’
487 | CONN_NOT_NULL_EX(30, GetPosition, 0);
| ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro ‘CORE_LOGF_X’
71 | CORE_LOGF_X(subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:500:9: note: in expansion of macro ‘CONN_LOG_EX’
500 | CONN_LOG_EX(31, GetPosition, eLOG_Error, errbuf, 0);
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c: In function ‘CONN_SetTimeout’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro ‘CORE_LOGF_X’
71 | CORE_LOGF_X(subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:105:11: note: in expansion of macro ‘CONN_LOG_EX’
105 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’
118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg)
| ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:516:5: note: in expansion of macro ‘CONN_NOT_NULL’
516 | CONN_NOT_NULL(8, SetTimeout);
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro ‘DO_CORE_LOG’
159 | DO_CORE_LOG(0, 0, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:2795:25: note: in expansion of macro ‘CORE_LOGF’
2795 | CORE_LOGF(eLOG_Trace,
| ^~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro ‘CORE_LOGF_X’
71 | CORE_LOGF_X(subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:112:11: note: in expansion of macro ‘CONN_LOG_EX’
112 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’
118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg)
| ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:516:5: note: in expansion of macro ‘CONN_NOT_NULL’
516 | CONN_NOT_NULL(8, SetTimeout);
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro ‘CORE_LOGF_X’
71 | CORE_LOGF_X(subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:556:9: note: in expansion of macro ‘CONN_LOG_EX’
556 | CONN_LOG_EX(9, SetTimeout, eLOG_Error, errbuf, eIO_InvalidArg);
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c: In function ‘CONN_GetTimeout’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro ‘CORE_LOGF_X’
71 | CORE_LOGF_X(subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:105:11: note: in expansion of macro ‘CONN_LOG_EX’
105 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:572:5: note: in expansion of macro ‘CONN_NOT_NULL_EX’
572 | CONN_NOT_NULL_EX(10, GetTimeout, 0);
| ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro ‘CORE_LOGF_X’
71 | CORE_LOGF_X(subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:112:11: note: in expansion of macro ‘CONN_LOG_EX’
112 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:572:5: note: in expansion of macro ‘CONN_NOT_NULL_EX’
572 | CONN_NOT_NULL_EX(10, GetTimeout, 0);
| ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro ‘CORE_LOGF_X’
71 | CORE_LOGF_X(subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:580:9: note: in expansion of macro ‘CONN_LOG_EX’
580 | CONN_LOG_EX(11, GetTimeout, eLOG_Warning,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c: In function ‘s_Recv’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro ‘CORE_LOGF_X’
71 | CORE_LOGF_X(subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:595:9: note: in expansion of macro ‘CONN_LOG_EX’
595 | CONN_LOG_EX(12, GetTimeout, eLOG_Error, errbuf, 0);
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c: In function ‘CONN_Wait’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:2951:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’
2951 | CORE_LOGF_ERRNO_EXX(7, eLOG_Trace,
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro ‘CORE_LOGF_X’
71 | CORE_LOGF_X(subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:105:11: note: in expansion of macro ‘CONN_LOG_EX’
105 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’
118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg)
| ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:611:5: note: in expansion of macro ‘CONN_NOT_NULL’
611 | CONN_NOT_NULL(13, Wait);
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro ‘CORE_LOGF_X’
71 | CORE_LOGF_X(subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:112:11: note: in expansion of macro ‘CONN_LOG_EX’
112 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’
118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg)
| ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:611:5: note: in expansion of macro ‘CONN_NOT_NULL’
611 | CONN_NOT_NULL(13, Wait);
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro ‘CORE_LOGF_X’
71 | CORE_LOGF_X(subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:82:39: note: in expansion of macro ‘CONN_LOG_EX’
82 | #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status)
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:659:9: note: in expansion of macro ‘CONN_LOG’
659 | CONN_LOG(event != eIO_Read ? 15 : 14, Wait, level,
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c: In function ‘s_CONN_Write’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro ‘CORE_LOGF_X’
71 | CORE_LOGF_X(subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:82:39: note: in expansion of macro ‘CONN_LOG_EX’
82 | #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status)
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:680:9: note: in expansion of macro ‘CONN_LOG’
680 | CONN_LOG(16, Write, eLOG_Critical, "Cannot write data");
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro ‘CORE_LOGF_X’
71 | CORE_LOGF_X(subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:82:39: note: in expansion of macro ‘CONN_LOG_EX’
82 | #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status)
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:723:13: note: in expansion of macro ‘CONN_LOG’
723 | CONN_LOG(17, Write, level, "Unable to write data");
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c: In function ‘CONN_Write’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro ‘CORE_LOGF_X’
71 | CORE_LOGF_X(subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:105:11: note: in expansion of macro ‘CONN_LOG_EX’
105 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’
118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg)
| ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:762:5: note: in expansion of macro ‘CONN_NOT_NULL’
762 | CONN_NOT_NULL(18, Write);
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c: In function ‘s_Read_’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro ‘CORE_LOGF_X’
71 | CORE_LOGF_X(subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:112:11: note: in expansion of macro ‘CONN_LOG_EX’
112 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’
118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg)
| ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:762:5: note: in expansion of macro ‘CONN_NOT_NULL’
762 | CONN_NOT_NULL(18, Write);
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:3136:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’
3136 | CORE_LOGF_ERRNO_X(8, eLOG_Error, errno,
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c: In function ‘CONN_Pushback’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro ‘CORE_LOGF_X’
71 | CORE_LOGF_X(subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:105:11: note: in expansion of macro ‘CONN_LOG_EX’
105 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’
118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg)
| ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:797:5: note: in expansion of macro ‘CONN_NOT_NULL’
797 | CONN_NOT_NULL(19, Pushback);
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro ‘CORE_LOGF_X’
71 | CORE_LOGF_X(subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:112:11: note: in expansion of macro ‘CONN_LOG_EX’
112 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’
118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg)
| ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:797:5: note: in expansion of macro ‘CONN_NOT_NULL’
797 | CONN_NOT_NULL(19, Pushback);
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c: In function ‘CONN_Flush’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro ‘CORE_LOGF_X’
71 | CORE_LOGF_X(subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:105:11: note: in expansion of macro ‘CONN_LOG_EX’
105 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’
118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg)
| ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:817:5: note: in expansion of macro ‘CONN_NOT_NULL’
817 | CONN_NOT_NULL(20, Flush);
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro ‘CORE_LOGF_X’
71 | CORE_LOGF_X(subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:112:11: note: in expansion of macro ‘CONN_LOG_EX’
112 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’
118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg)
| ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:817:5: note: in expansion of macro ‘CONN_NOT_NULL’
817 | CONN_NOT_NULL(20, Flush);
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro ‘CORE_LOGF_X’
71 | CORE_LOGF_X(subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:82:39: note: in expansion of macro ‘CONN_LOG_EX’
82 | #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status)
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:832:9: note: in expansion of macro ‘CONN_LOG’
832 | CONN_LOG(21, Flush, status == eIO_Timeout ? eLOG_Trace : eLOG_Warning,
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c: In function ‘s_CONN_Read’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro ‘CORE_LOGF_X’
71 | CORE_LOGF_X(subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:82:39: note: in expansion of macro ‘CONN_LOG_EX’
82 | #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status)
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:856:9: note: in expansion of macro ‘CONN_LOG’
856 | CONN_LOG(22, Read, eLOG_Critical, "Cannot read data");
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro ‘CORE_LOGF_X’
71 | CORE_LOGF_X(subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:898:17: note: in expansion of macro ‘CONN_LOG_EX’
898 | CONN_LOG_EX(32, Read, eLOG_Critical,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c: In function ‘s_Send’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro ‘CORE_LOGF_X’
71 | CORE_LOGF_X(subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:82:39: note: in expansion of macro ‘CONN_LOG_EX’
82 | #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status)
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:924:13: note: in expansion of macro ‘CONN_LOG’
924 | CONN_LOG(23, Read, level, "Unable to read data");
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:3487:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’
3487 | CORE_LOGF_ERRNO_EXX(11, eLOG_Trace,
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c: In function ‘s_WriteData’:
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c: In function ‘CONN_Read’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro ‘CORE_LOGF_X’
71 | CORE_LOGF_X(subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:105:11: note: in expansion of macro ‘CONN_LOG_EX’
105 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’
118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg)
| ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:971:5: note: in expansion of macro ‘CONN_NOT_NULL’
971 | CONN_NOT_NULL(24, Read);
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:3575:31: warning: ordered comparison of pointer with integer zero [-Wpedantic]
3575 | n_written > 0 ? " [encrypt]" : 0);
| ^
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro ‘CORE_LOGF_X’
71 | CORE_LOGF_X(subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:112:11: note: in expansion of macro ‘CONN_LOG_EX’
112 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’
118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg)
| ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:971:5: note: in expansion of macro ‘CONN_NOT_NULL’
971 | CONN_NOT_NULL(24, Read);
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c: In function ‘s_WritePending’:
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c: In function ‘CONN_ReadLine’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro ‘CORE_LOGF_X’
71 | CORE_LOGF_X(subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:105:11: note: in expansion of macro ‘CONN_LOG_EX’
105 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’
118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg)
| ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:1020:5: note: in expansion of macro ‘CONN_NOT_NULL’
1020 | CONN_NOT_NULL(25, ReadLine);
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:3639:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’
3639 | CORE_LOGF_ERRNO_EXX(12, sock->log != eOff
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro ‘CORE_LOGF_X’
71 | CORE_LOGF_X(subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:112:11: note: in expansion of macro ‘CONN_LOG_EX’
112 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’
118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg)
| ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:1020:5: note: in expansion of macro ‘CONN_NOT_NULL’
1020 | CONN_NOT_NULL(25, ReadLine);
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro ‘CORE_LOGF_X’
71 | CORE_LOGF_X(subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:1067:17: note: in expansion of macro ‘CONN_LOG_EX’
1067 | CONN_LOG_EX(35, ReadLine, eLOG_Critical,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c: In function ‘CONN_Status’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro ‘CORE_LOGF_X’
71 | CORE_LOGF_X(subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:105:11: note: in expansion of macro ‘CONN_LOG_EX’
105 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’
118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg)
| ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:1086:5: note: in expansion of macro ‘CONN_NOT_NULL’
1086 | CONN_NOT_NULL(26, Status);
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro ‘CORE_LOGF_X’
71 | CORE_LOGF_X(subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:112:11: note: in expansion of macro ‘CONN_LOG_EX’
112 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’
118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg)
| ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:1086:5: note: in expansion of macro ‘CONN_NOT_NULL’
1086 | CONN_NOT_NULL(26, Status);
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c: In function ‘s_Shutdown’:
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c: In function ‘CONN_Close’:
In file included from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_connutil.c:35:
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connssl.h:48:25: warning: ISO C restricts enumerator values to range of ‘int’ [-Wpedantic]
48 | eNcbiCred_MbedTls = 0xC12CC114
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro ‘CORE_LOGF_X’
71 | CORE_LOGF_X(subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:105:11: note: in expansion of macro ‘CONN_LOG_EX’
105 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’
118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg)
| ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:1132:5: note: in expansion of macro ‘CONN_NOT_NULL’
1132 | CONN_NOT_NULL(27, Close);
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:3813:21: note: in expansion of macro ‘CORE_LOGF_X’
3813 | CORE_LOGF_X(13, !tv || (tv->tv_sec | tv->tv_usec)
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro ‘CORE_LOGF_X’
71 | CORE_LOGF_X(subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:112:11: note: in expansion of macro ‘CONN_LOG_EX’
112 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’
118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg)
| ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:1132:5: note: in expansion of macro ‘CONN_NOT_NULL’
1132 | CONN_NOT_NULL(27, Close);
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c: In function ‘CONN_SetCallback’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro ‘CORE_LOGF_X’
71 | CORE_LOGF_X(subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:105:11: note: in expansion of macro ‘CONN_LOG_EX’
105 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’
118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg)
| ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:1152:5: note: in expansion of macro ‘CONN_NOT_NULL’
1152 | CONN_NOT_NULL(28, SetCallback);
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro ‘CORE_LOGF_X’
71 | CORE_LOGF_X(subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:112:11: note: in expansion of macro ‘CONN_LOG_EX’
112 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’
118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg)
| ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:1152:5: note: in expansion of macro ‘CONN_NOT_NULL’
1152 | CONN_NOT_NULL(28, SetCallback);
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro ‘CORE_LOGF_X’
71 | CORE_LOGF_X(subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:1158:9: note: in expansion of macro ‘CONN_LOG_EX’
1158 | CONN_LOG_EX(29, SetCallback, eLOG_Error, errbuf, eIO_InvalidArg);
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c: In function ‘CONN_GetSOCK’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:3849:25: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’
3849 | CORE_LOGF_ERRNO_EXX(127, eLOG_Trace,
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro ‘CORE_LOGF_X’
71 | CORE_LOGF_X(subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:105:11: note: in expansion of macro ‘CONN_LOG_EX’
105 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’
118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg)
| ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:1180:5: note: in expansion of macro ‘CONN_NOT_NULL’
1180 | CONN_NOT_NULL(36, GetSOCK);
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro ‘CORE_LOGF_X’
71 | CORE_LOGF_X(subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:112:11: note: in expansion of macro ‘CONN_LOG_EX’
112 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’
118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg)
| ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c:1180:5: note: in expansion of macro ‘CONN_NOT_NULL’
1180 | CONN_NOT_NULL(36, GetSOCK);
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:3900:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’
3900 | CORE_LOGF_ERRNO_EXX(16, eLOG_Trace,
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c: In function ‘s_Close_’:
In file included from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_servicep.h:38,
from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_connutil.c:37:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of ‘int’ [-Wpedantic]
91 | fSERV_IncludePrivate = 0x80000000,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of ‘int’ [-Wpedantic]
92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:3981:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’
3981 | CORE_LOGF_ERRNO_EXX(17, eLOG_Trace,
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:3997:21: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’
3997 | CORE_LOGF_ERRNO_EXX(18, eLOG_Trace,
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:4059:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’
4059 | CORE_LOGF_ERRNO_EXX(19, eLOG_Trace,
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:4099:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’
4099 | CORE_LOGF_ERRNO_EXX(21, abort == 1 ? eLOG_Warning : eLOG_Error,
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c: In function ‘s_Connect_’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:4203:13: note: in expansion of macro ‘CORE_LOGF_X’
4203 | CORE_LOGF_X(142, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:4228:13: note: in expansion of macro ‘CORE_LOGF_X’
4228 | CORE_LOGF_X(22, eLOG_Error,
| ^~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:62,
from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_connutil.c:36:
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connutil.c: In function ‘ConnNetInfo_Log’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:4254:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’
4254 | CORE_LOGF_ERRNO_EXX(23, eLOG_Error,
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:137:54: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
137 | LOG_Write(lg, code, subcode, level, THIS_MODULE, CORE_CURRENT_FUNCTION, \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connutil.c:1728:9: note: in expansion of macro ‘LOG_WRITE’
1728 | LOG_WRITE(lg, NCBI_C_ERRCODE_X, 11,
| ^~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:4316:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’
4316 | CORE_LOGF_ERRNO_EXX(151, eLOG_Warning,
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connutil.c: In function ‘URL_ConnectEx’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connutil.c:1944:9: note: in expansion of macro ‘CORE_LOG_X’
1944 | CORE_LOG_X(2, eLOG_Critical, "[URL_Connect] Bad argument(s)");
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connutil.c:1981:9: note: in expansion of macro ‘CORE_LOGF_X’
1981 | CORE_LOGF_X(3, eLOG_Warning,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connutil.c:2004:9: note: in expansion of macro ‘CORE_LOGF_X’
2004 | CORE_LOGF_X(4, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:4327:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’
4327 | CORE_LOGF_ERRNO_EXX(135, eLOG_Warning,
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connutil.c:2055:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’
2055 | CORE_LOGF_ERRNO_X(5, eLOG_Error, x_errno,
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connutil.c:2072:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’
2072 | CORE_LOGF_ERRNO_X(6, eLOG_Error, x_errno,
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connutil.c:2119:9: note: in expansion of macro ‘CORE_LOGF_X’
2119 | CORE_LOGF_X(7, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connutil.c: In function ‘URL_Connect’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connutil.c:2152:9: note: in expansion of macro ‘CORE_LOG_X’
2152 | CORE_LOG_X(9, eLOG_Error,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connutil.c:2194:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’
2194 | CORE_LOGF_ERRNO_X(8, eLOG_Error, errno,
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:4372:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’
4372 | CORE_LOGF_ERRNO_EXX(131, eLOG_Error,
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:4420:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’
4420 | CORE_LOGF_ERRNO_EXX(25, sock->log != eOff
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:4462:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’
4462 | CORE_LOGF_ERRNO_EXX(26, sock->log != eOff
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c: In function ‘s_Create’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:4570:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’
4570 | CORE_LOGF_ERRNO_X(27, eLOG_Error, errno,
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c: In function ‘s_CreateOnTop’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:4632:9: note: in expansion of macro ‘CORE_LOGF_X’
4632 | CORE_LOGF_X(47, eLOG_Error,
| ^~~~~~~~~~~
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
cd util/sequtil/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=sequtil UNIX_PROJ="" sources= configurables=configurables.null
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:4690:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’
4690 | CORE_LOGF_ERRNO_EXX(148, eLOG_Error,
| ^~~~~~~~~~~~~~~~~~~
i-blast+-2.12.0+ds/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/composition_adjustment/optimize_target_freq.c -o optimize_target_freq.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/composition_adjustment/redo_alignment.c -o redo_alignment.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/composition_adjustment/smith_waterman.c -o smith_waterman.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/composition_adjustment/unified_pvalues.c -o unified_pvalues.o
/bin/rm -f libcomposition_adjustment.so .libcomposition_adjustment.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libcomposition_adjustment.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC compo_heap.o compo_mode_condition.o composition_adjustment.o matrix_frequency_data.o nlm_linear_algebra.o optimize_target_freq.o redo_alignment.o smith_waterman.o unified_pvalues.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcomposition_adjustment.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libcomposition_adjustment.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libcomposition_adjustment.so
/bin/ln -f .composition_adjustment.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.composition_adjustment.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/composition_adjustment'
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:4734:17: note: in expansion of macro ‘CORE_LOGF_X’
4734 | CORE_LOGF_X(48, eLOG_Error,
| ^~~~~~~~~~~
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/sequtil'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:4783:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’
4783 | CORE_LOGF_ERRNO_EXX(50, eLOG_Error,
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:4800:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’
4800 | CORE_LOGF_ERRNO_X(49, eLOG_Error, errno,
| ^~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/composition_adjustment'
cd objtools/logging/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=logging UNIX_PROJ="" sources= configurables=configurables.null
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:4887:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’
4887 | CORE_LOGF_ERRNO_EXX(132, eLOG_Error,
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro ‘DO_CORE_LOG’
159 | DO_CORE_LOG(0, 0, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:4909:17: note: in expansion of macro ‘CORE_LOGF’
4909 | CORE_LOGF(eLOG_Trace,
| ^~~~~~~~~
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/logging'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:4938:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’
4938 | CORE_LOGF_ERRNO_EXX(153, eLOG_Warning,
| ^~~~~~~~~~~~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/sequtil'
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:4949:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’
4949 | CORE_LOGF_ERRNO_EXX(138, eLOG_Warning,
| ^~~~~~~~~~~~~~~~~~~
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/sequtil'
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:4972:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’
4972 | CORE_LOGF_ERRNO_EXX(124, eLOG_Warning,
| ^~~~~~~~~~~~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/sequtil'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/sequtil'
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:4990:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’
4990 | CORE_LOGF_ERRNO_EXX(43, eLOG_Warning,
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c: In function ‘s_CreateListening’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:5064:13: note: in expansion of macro ‘CORE_LOGF_X’
5064 | CORE_LOGF_X(144, eLOG_Error,
| ^~~~~~~~~~~
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/util/sequtil TMPL=sequtil -w -j4 --jobserver-auth=7,8 all
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/logging'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/logging'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/logging'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/logging'
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:5106:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’
5106 | CORE_LOGF_ERRNO_EXX(34, eLOG_Error,
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:5152:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’
5152 | CORE_LOGF_ERRNO_EXX(35, eLOG_Error,
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:5207:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’
5207 | CORE_LOGF_ERRNO_EXX(36, error != SOCK_EADDRINUSE
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:5228:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’
5228 | CORE_LOGF_ERRNO_EXX(150, eLOG_Error,
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:5298:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’
5298 | CORE_LOGF_ERRNO_EXX(37, eLOG_Error,
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:5365:9: note: in expansion of macro ‘CORE_LOGF_X’
5365 | CORE_LOGF_X(115, eLOG_Note,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c: In function ‘s_Accept’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:5402:9: note: in expansion of macro ‘CORE_LOGF_X’
5402 | CORE_LOGF_X(39, eLOG_Error,
| ^~~~~~~~~~~
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objtools/logging TMPL=logging -w -j4 --jobserver-auth=7,8 all
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:5458:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’
5458 | CORE_LOGF_ERRNO_EXX(40, eLOG_Error,
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:5517:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’
5517 | CORE_LOGF_ERRNO_EXX(41, eLOG_Error,
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:5574:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’
5574 | CORE_LOGF_ERRNO_EXX(42, eLOG_Warning,
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:5585:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’
5585 | CORE_LOGF_ERRNO_EXX(152, eLOG_Warning,
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:5596:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’
5596 | CORE_LOGF_ERRNO_EXX(137, eLOG_Warning,
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:5616:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’
5616 | CORE_LOGF_ERRNO_EXX(128, eLOG_Warning,
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c: In function ‘s_CloseListening’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:5668:9: note: in expansion of macro ‘CORE_LOGF_X’
5668 | CORE_LOGF_X(44, eLOG_Note,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:5694:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’
5694 | CORE_LOGF_ERRNO_EXX(45, eLOG_Error,
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c: In function ‘s_RecvMsg’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:5780:17: note: in expansion of macro ‘CORE_LOGF_X’
5780 | CORE_LOGF_X(20, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:5829:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’
5829 | CORE_LOGF_ERRNO_EXX(94, eLOG_Trace,
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c: In function ‘s_SendMsg’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:5864:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’
5864 | CORE_LOGF_ERRNO_X(154, eLOG_Error, errno,
| ^~~~~~~~~~~~~~~~~
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:5881:9: note: in expansion of macro ‘CORE_LOGF_X’
5881 | CORE_LOGF_X(88, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:5890:9: note: in expansion of macro ‘CORE_LOGF_X’
5890 | CORE_LOGF_X(89, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:5940:17: note: in expansion of macro ‘CORE_LOGF_X’
5940 | CORE_LOGF_X(90, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:5986:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’
5986 | CORE_LOGF_ERRNO_EXX(91, eLOG_Trace,
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c: In function ‘TRIGGER_Create’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:6031:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’
6031 | CORE_LOGF_ERRNO_X(28, eLOG_Error, errno,
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:6041:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’
6041 | CORE_LOGF_ERRNO_X(143, eLOG_Warning, errno,
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:6053:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’
6053 | CORE_LOGF_ERRNO_X(29, eLOG_Error, errno,
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:6063:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’
6063 | CORE_LOGF_ERRNO_X(30, eLOG_Warning, errno,
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:6082:13: note: in expansion of macro ‘CORE_LOGF_X’
6082 | CORE_LOGF_X(116, eLOG_Note,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c: In function ‘TRIGGER_Close’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:6136:9: note: in expansion of macro ‘CORE_LOGF_X’
6136 | CORE_LOGF_X(117, eLOG_Note,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c: In function ‘LSOCK_GetOSHandleEx’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:6360:9: note: in expansion of macro ‘CORE_LOGF_X’
6360 | CORE_LOGF_X(46, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c: In function ‘SOCK_Reconnect’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:6528:9: note: in expansion of macro ‘CORE_LOGF_X’
6528 | CORE_LOGF_X(52, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:6538:9: note: in expansion of macro ‘CORE_LOGF_X’
6538 | CORE_LOGF_X(53, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:6550:13: note: in expansion of macro ‘CORE_LOGF_X’
6550 | CORE_LOGF_X(51, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c: In function ‘SOCK_Shutdown’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:6588:9: note: in expansion of macro ‘CORE_LOGF_X’
6588 | CORE_LOGF_X(54, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:6595:9: note: in expansion of macro ‘CORE_LOGF_X’
6595 | CORE_LOGF_X(55, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:6603:9: note: in expansion of macro ‘CORE_LOGF_X’
6603 | CORE_LOGF_X(15, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c: In function ‘SOCK_Wait’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:6749:9: note: in expansion of macro ‘CORE_LOGF_X’
6749 | CORE_LOGF_X(56, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:6777:13: note: in expansion of macro ‘CORE_LOGF_X’
6777 | CORE_LOGF_X(57, eLOG_Warning,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:6791:13: note: in expansion of macro ‘CORE_LOGF_X’
6791 | CORE_LOGF_X(58, eLOG_Warning,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:6805:17: note: in expansion of macro ‘CORE_LOGF_X’
6805 | CORE_LOGF_X(59, eLOG_Warning,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:6814:17: note: in expansion of macro ‘CORE_LOGF_X’
6814 | CORE_LOGF_X(60, eLOG_Warning,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:6824:13: note: in expansion of macro ‘CORE_LOGF_X’
6824 | CORE_LOGF_X(61, eLOG_Warning,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:6834:9: note: in expansion of macro ‘CORE_LOGF_X’
6834 | CORE_LOGF_X(62, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c: In function ‘SOCK_SetTimeout’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:6969:9: note: in expansion of macro ‘CORE_LOGF_X’
6969 | CORE_LOGF_X(63, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c: In function ‘SOCK_GetTimeout’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:7010:9: note: in expansion of macro ‘CORE_LOGF_X’
7010 | CORE_LOGF_X(64, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c: In function ‘SOCK_Read’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:7052:13: note: in expansion of macro ‘CORE_LOGF_X’
7052 | CORE_LOGF_X(65, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:7062:9: note: in expansion of macro ‘CORE_LOGF_X’
7062 | CORE_LOGF_X(66, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c: In function ‘SOCK_ReadLine’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:7096:9: note: in expansion of macro ‘CORE_LOGF_X’
7096 | CORE_LOGF_X(125, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c: In function ‘SOCK_Pushback’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:7176:9: note: in expansion of macro ‘CORE_LOGF_X’
7176 | CORE_LOGF_X(67, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c: In function ‘SOCK_Write’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:7233:17: note: in expansion of macro ‘CORE_LOGF_X’
7233 | CORE_LOGF_X(68, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:7260:13: note: in expansion of macro ‘CORE_LOGF_X’
7260 | CORE_LOGF_X(69, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:7270:9: note: in expansion of macro ‘CORE_LOGF_X’
7270 | CORE_LOGF_X(70, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c: In function ‘SOCK_Abort’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:7289:9: note: in expansion of macro ‘CORE_LOGF_X’
7289 | CORE_LOGF_X(71, eLOG_Warning,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:7296:9: note: in expansion of macro ‘CORE_LOGF_X’
7296 | CORE_LOGF_X(72, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c: In function ‘SOCK_GetOSHandleEx’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:7443:9: note: in expansion of macro ‘CORE_LOGF_X’
7443 | CORE_LOGF_X(73, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c: In function ‘SOCK_SetCork’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:7505:9: note: in expansion of macro ‘CORE_LOGF_X’
7505 | CORE_LOGF_X(158, eLOG_Warning,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:7512:9: note: in expansion of macro ‘CORE_LOGF_X’
7512 | CORE_LOGF_X(159, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:7525:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’
7525 | CORE_LOGF_ERRNO_EXX(160, eLOG_Warning,
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c: In function ‘SOCK_DisableOSSendDelay’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:7547:9: note: in expansion of macro ‘CORE_LOGF_X’
7547 | CORE_LOGF_X(156, eLOG_Warning,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:7554:9: note: in expansion of macro ‘CORE_LOGF_X’
7554 | CORE_LOGF_X(157, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:7567:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’
7567 | CORE_LOGF_ERRNO_EXX(75, eLOG_Warning,
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c: In function ‘DSOCK_CreateEx’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:7618:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’
7618 | CORE_LOGF_ERRNO_EXX(76, eLOG_Error,
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c: In function ‘DSOCK_Bind’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:7738:9: note: in expansion of macro ‘CORE_LOGF_X’
7738 | CORE_LOGF_X(79, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:7745:9: note: in expansion of macro ‘CORE_LOGF_X’
7745 | CORE_LOGF_X(78, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:7763:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’
7763 | CORE_LOGF_ERRNO_EXX(80, error != SOCK_EADDRINUSE
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:7779:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’
7779 | CORE_LOGF_ERRNO_EXX(114, eLOG_Error,
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c: In function ‘DSOCK_Connect’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:7808:9: note: in expansion of macro ‘CORE_LOGF_X’
7808 | CORE_LOGF_X(82, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:7815:9: note: in expansion of macro ‘CORE_LOGF_X’
7815 | CORE_LOGF_X(81, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:7834:9: note: in expansion of macro ‘CORE_LOGF_X’
7834 | CORE_LOGF_X(83, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:7847:9: note: in expansion of macro ‘CORE_LOGF_X’
7847 | CORE_LOGF_X(84, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:7876:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’
7876 | CORE_LOGF_ERRNO_EXX(85, eLOG_Error,
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c: In function ‘DSOCK_WaitMsg’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:7904:9: note: in expansion of macro ‘CORE_LOGF_X’
7904 | CORE_LOGF_X(96, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:7911:9: note: in expansion of macro ‘CORE_LOGF_X’
7911 | CORE_LOGF_X(95, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c: In function ‘DSOCK_RecvMsg’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:7964:9: note: in expansion of macro ‘CORE_LOGF_X’
7964 | CORE_LOGF_X(93, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:7971:9: note: in expansion of macro ‘CORE_LOGF_X’
7971 | CORE_LOGF_X(92, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c: In function ‘DSOCK_SendMsg’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:8008:9: note: in expansion of macro ‘CORE_LOGF_X’
8008 | CORE_LOGF_X(87, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:8015:9: note: in expansion of macro ‘CORE_LOGF_X’
8015 | CORE_LOGF_X(86, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c: In function ‘DSOCK_WipeMsg’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:8047:9: note: in expansion of macro ‘CORE_LOGF_X’
8047 | CORE_LOGF_X(98, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:8054:9: note: in expansion of macro ‘CORE_LOGF_X’
8054 | CORE_LOGF_X(97, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:8074:9: note: in expansion of macro ‘CORE_LOGF_X’
8074 | CORE_LOGF_X(99, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c: In function ‘DSOCK_SetBroadcast’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:8092:9: note: in expansion of macro ‘CORE_LOGF_X’
8092 | CORE_LOGF_X(101, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:8099:9: note: in expansion of macro ‘CORE_LOGF_X’
8099 | CORE_LOGF_X(100, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:8119:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’
8119 | CORE_LOGF_ERRNO_EXX(102, eLOG_Error,
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c: In function ‘SOCK_SetReuseAddress’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:8285:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’
8285 | CORE_LOGF_ERRNO_EXX(74, eLOG_Warning,
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c: In function ‘SOCK_SetupSSLInternal’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro ‘DO_CORE_LOG’
159 | DO_CORE_LOG(0, 0, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c:8674:13: note: in expansion of macro ‘CORE_LOGF’
8674 | CORE_LOGF(eLOG_Critical, ("%s reset SSL while it is in use",verb));
| ^~~~~~~~~
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/ncbi_buffer.c -o ncbi_buffer.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket.c -o ncbi_socket.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/ncbi_connector.c -o ncbi_connector.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/ncbi_connection.c -o ncbi_connection.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/ncbi_connutil.c -o ncbi_connutil.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/ncbi_ipv6.c -o ncbi_ipv6.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -WallIn file included from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_servicep.h:38,
from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbsmd.h:37,
from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_host_info.c:33:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of ‘int’ [-Wpedantic]
91 | fSERV_IncludePrivate = 0x80000000,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of ‘int’ [-Wpedantic]
92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */
| ^~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_servicep.h:38,
from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_dispd.h:37,
from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_service.c:34:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of ‘int’ [-Wpedantic]
91 | fSERV_IncludePrivate = 0x80000000,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of ‘int’ [-Wpedantic]
92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */
| ^~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:62,
from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_service.c:42:
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_service.c: In function ‘x_ServiceName’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_service.c:107:9: note: in expansion of macro ‘CORE_LOGF_X’
107 | CORE_LOGF_X(7, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_service.c:140:13: note: in expansion of macro ‘CORE_LOGF_X’
140 | CORE_LOGF_X(8, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_service.c: In function ‘x_Open’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_service.c:380:13: note: in expansion of macro ‘CORE_LOGF_X’
380 | CORE_LOGF_X(1, eLOG_Error,
| ^~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_servicep.h:38,
from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c:35:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of ‘int’ [-Wpedantic]
91 | fSERV_IncludePrivate = 0x80000000,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of ‘int’ [-Wpedantic]
92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */
| ^~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:62,
from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c:34:
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c: In function ‘s_SendRcpt’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro ‘CORE_LOGF_X’
347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c:415:13: note: in expansion of macro ‘SENDMAIL_RETURN’
415 | SENDMAIL_RETURN(3, "Recipient address is too long");
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c:418:13: note: in expansion of macro ‘CORE_LOGF_X’
418 | CORE_LOGF_X(1, eLOG_Warning,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro ‘CORE_LOGF_X’
347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c:426:13: note: in expansion of macro ‘SENDMAIL_RETURN’
426 | SENDMAIL_RETURN(4, write_error);
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c:364:9: note: in expansion of macro ‘CORE_LOGF_X’
364 | CORE_LOGF_X(subcode, eLOG_Error, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c:430:13: note: in expansion of macro ‘SENDMAIL_RETURN2’
430 | SENDMAIL_RETURN2(5, proto_error, buf);
| ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c: In function ‘CORE_SendMailEx’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro ‘CORE_LOGF_X’
347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c:485:9: note: in expansion of macro ‘SENDMAIL_RETURN’
485 | SENDMAIL_RETURN(6, "SSendMailInfo inited improperly: Invalid magic");
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro ‘CORE_LOGF_X’
347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c:490:9: note: in expansion of macro ‘SENDMAIL_RETURN’
490 | SENDMAIL_RETURN(7, "At least one message recipient must be specified");
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c:364:9: note: in expansion of macro ‘CORE_LOGF_X’
364 | CORE_LOGF_X(subcode, eLOG_Error, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c:500:9: note: in expansion of macro ‘SENDMAIL_RETURN2’
500 | SENDMAIL_RETURN2(8, "Cannot connect to sendmail", buffer);
| ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c:364:9: note: in expansion of macro ‘CORE_LOGF_X’
364 | CORE_LOGF_X(subcode, eLOG_Error, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c:508:9: note: in expansion of macro ‘SENDMAIL_RETURN2’
508 | SENDMAIL_RETURN2(9, "Protocol error in connection init", buffer);
| ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro ‘CORE_LOGF_X’
347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c:513:9: note: in expansion of macro ‘SENDMAIL_RETURN’
513 | SENDMAIL_RETURN(10, "Unable to get local host name");
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro ‘CORE_LOGF_X’
347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c:518:9: note: in expansion of macro ‘SENDMAIL_RETURN’
518 | SENDMAIL_RETURN(11, "Write error in HELO command");
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c:364:9: note: in expansion of macro ‘CORE_LOGF_X’
364 | CORE_LOGF_X(subcode, eLOG_Error, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c:521:9: note: in expansion of macro ‘SENDMAIL_RETURN2’
521 | SENDMAIL_RETURN2(12, "Protocol error in HELO command", buffer);
| ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro ‘CORE_LOGF_X’
347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c:526:9: note: in expansion of macro ‘SENDMAIL_RETURN’
526 | SENDMAIL_RETURN(13, "Write error in MAIL command");
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c:364:9: note: in expansion of macro ‘CORE_LOGF_X’
364 | CORE_LOGF_X(subcode, eLOG_Error, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c:529:9: note: in expansion of macro ‘SENDMAIL_RETURN2’
529 | SENDMAIL_RETURN2(14, "Protocol error in MAIL command", buffer);
| ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro ‘CORE_LOGF_X’
347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c:550:9: note: in expansion of macro ‘SENDMAIL_RETURN’
550 | SENDMAIL_RETURN(15, "Write error in DATA command");
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c:364:9: note: in expansion of macro ‘CORE_LOGF_X’
364 | CORE_LOGF_X(subcode, eLOG_Error, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c:552:9: note: in expansion of macro ‘SENDMAIL_RETURN2’
552 | SENDMAIL_RETURN2(16, "Protocol error in DATA command", buffer);
| ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro ‘CORE_LOGF_X’
347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c:583:21: note: in expansion of macro ‘SENDMAIL_RETURN’
583 | SENDMAIL_RETURN(32, "Write error in sending Date");
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro ‘CORE_LOGF_X’
347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c:590:21: note: in expansion of macro ‘SENDMAIL_RETURN’
590 | SENDMAIL_RETURN(33, "Write error in sending From");
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro ‘CORE_LOGF_X’
347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c:598:17: note: in expansion of macro ‘SENDMAIL_RETURN’
598 | SENDMAIL_RETURN(17, "Write error in sending Subject");
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro ‘CORE_LOGF_X’
347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c:605:17: note: in expansion of macro ‘SENDMAIL_RETURN’
605 | SENDMAIL_RETURN(18, "Write error in sending To");
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro ‘CORE_LOGF_X’
347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c:612:17: note: in expansion of macro ‘SENDMAIL_RETURN’
612 | SENDMAIL_RETURN(19, "Write error in sending Cc");
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c:616:9: note: in expansion of macro ‘CORE_LOG_X’
616 | CORE_LOG_X(2, eLOG_Warning,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro ‘CORE_LOGF_X’
347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c:627:9: note: in expansion of macro ‘SENDMAIL_RETURN’
627 | SENDMAIL_RETURN(20, "Write error in sending mailer information");
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro ‘CORE_LOGF_X’
347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c:655:17: note: in expansion of macro ‘SENDMAIL_RETURN’
655 | SENDMAIL_RETURN(21, "Write error while sending custom header");
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c:364:9: note: in expansion of macro ‘CORE_LOGF_X’
364 | CORE_LOGF_X(subcode, eLOG_Error, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c:664:13: note: in expansion of macro ‘SENDMAIL_RETURN2’
664 | SENDMAIL_RETURN2(22, error, buffer);
| ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro ‘CORE_LOGF_X’
347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c:667:13: note: in expansion of macro ‘SENDMAIL_RETURN’
667 | SENDMAIL_RETURN(23, "Write error in finalizing custom header");
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro ‘CORE_LOGF_X’
347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c:676:17: note: in expansion of macro ‘SENDMAIL_RETURN’
676 | SENDMAIL_RETURN(24, "Write error in message body delimiter");
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro ‘CORE_LOGF_X’
347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c:702:17: note: in expansion of macro ‘SENDMAIL_RETURN’
702 | SENDMAIL_RETURN(25, "Write error while sending message body");
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c:364:9: note: in expansion of macro ‘CORE_LOGF_X’
364 | CORE_LOGF_X(subcode, eLOG_Error, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c:711:13: note: in expansion of macro ‘SENDMAIL_RETURN2’
711 | SENDMAIL_RETURN2(26, error, buffer);
| ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro ‘CORE_LOGF_X’
347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c:715:13: note: in expansion of macro ‘SENDMAIL_RETURN’
715 | SENDMAIL_RETURN(27, "Write error while finalizing message body");
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro ‘CORE_LOGF_X’
347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c:718:9: note: in expansion of macro ‘SENDMAIL_RETURN’
718 | SENDMAIL_RETURN(28, "Write error while finalizing message");
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c:364:9: note: in expansion of macro ‘CORE_LOGF_X’
364 | CORE_LOGF_X(subcode, eLOG_Error, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c:723:9: note: in expansion of macro ‘SENDMAIL_RETURN2’
723 | SENDMAIL_RETURN2(29, "Protocol error in sending message", buffer);
| ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro ‘CORE_LOGF_X’
347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c:726:9: note: in expansion of macro ‘SENDMAIL_RETURN’
726 | SENDMAIL_RETURN(30, "Write error in QUIT command");
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c:364:9: note: in expansion of macro ‘CORE_LOGF_X’
364 | CORE_LOGF_X(subcode, eLOG_Error, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c:728:9: note: in expansion of macro ‘SENDMAIL_RETURN2’
728 | SENDMAIL_RETURN2(31, "Protocol error in QUIT command", buffer);
| ^~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:62,
from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_heapmgr.c:115:
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_heapmgr.c: In function ‘HEAP_Create’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_heapmgr.c:273:9: note: in expansion of macro ‘CORE_LOGF_X’
273 | CORE_LOGF_X(1, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_heapmgr.c:295:13: note: in expansion of macro ‘CORE_LOGF_X’
295 | CORE_LOGF_X(2, eLOG_Warning,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_heapmgr.c: In function ‘HEAP_AttachFast’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_heapmgr.c:319:9: note: in expansion of macro ‘CORE_LOGF_X’
319 | CORE_LOGF_X(3, eLOG_Warning,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_heapmgr.c:329:9: note: in expansion of macro ‘CORE_LOGF_X’
329 | CORE_LOGF_X(4, eLOG_Warning,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_heapmgr.c: In function ‘HEAP_Attach’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_heapmgr.c:360:17: note: in expansion of macro ‘CORE_LOGF_X’
360 | CORE_LOGF_X(34, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_heapmgr.c: In function ‘s_HEAP_Find’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_heapmgr.c:451:9: note: in expansion of macro ‘CORE_LOGF_X’
451 | CORE_LOGF_X(8, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_heapmgr.c: In function ‘HEAP_Alloc’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_heapmgr.c:649:9: note: in expansion of macro ‘CORE_LOG_X’
649 | CORE_LOG_X(6, eLOG_Warning, "Heap Alloc: NULL heap");
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_heapmgr.c:655:9: note: in expansion of macro ‘CORE_LOGF_X’
655 | CORE_LOGF_X(7, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_heapmgr.c:702:13: note: in expansion of macro ‘CORE_LOGF_X’
702 | CORE_LOGF_X(9, eLOG_Warning,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_heapmgr.c: In function ‘HEAP_Free’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_heapmgr.c:826:9: note: in expansion of macro ‘CORE_LOG_X’
826 | CORE_LOG_X(10, eLOG_Warning, "Heap Free: NULL heap");
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_heapmgr.c:832:9: note: in expansion of macro ‘CORE_LOGF_X’
832 | CORE_LOGF_X(11, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_heapmgr.c:845:13: note: in expansion of macro ‘CORE_LOGF_X’
845 | CORE_LOGF_X(13, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_heapmgr.c:853:17: note: in expansion of macro ‘CORE_LOGF_X’
853 | CORE_LOGF_X(12, eLOG_Warning,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_heapmgr.c:865:5: note: in expansion of macro ‘CORE_LOGF_X’
865 | CORE_LOGF_X(14, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_heapmgr.c: In function ‘HEAP_FreeFast’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_heapmgr.c:877:9: note: in expansion of macro ‘CORE_LOG_X’
877 | CORE_LOG_X(15, eLOG_Warning, "Heap Free: NULL heap");
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_heapmgr.c:883:9: note: in expansion of macro ‘CORE_LOGF_X’
883 | CORE_LOGF_X(16, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_heapmgr.c:902:13: note: in expansion of macro ‘CORE_LOGF_X’
902 | CORE_LOGF_X(17, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_heapmgr.c:913:13: note: in expansion of macro ‘CORE_LOGF_X’
913 | CORE_LOGF_X(18, eLOG_Warning,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_heapmgr.c:920:13: note: in expansion of macro ‘CORE_LOGF_X’
920 | CORE_LOGF_X(19, eLOG_Warning,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_heapmgr.c: In function ‘HEAP_Trim’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_heapmgr.c:942:9: note: in expansion of macro ‘CORE_LOGF_X’
942 | CORE_LOGF_X(30, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_heapmgr.c:977:13: note: in expansion of macro ‘CORE_LOGF_X’
977 | CORE_LOGF_X(31, eLOG_Warning,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_heapmgr.c:1004:9: note: in expansion of macro ‘CORE_LOGF_X’
1004 | CORE_LOGF_X(32, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_heapmgr.c: In function ‘x_HEAP_Walk’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_heapmgr.c:1025:13: note: in expansion of macro ‘CORE_LOGF_X’
1025 | CORE_LOGF_X(28, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_heapmgr.c:1038:13: note: in expansion of macro ‘CORE_LOGF_X’
1038 | CORE_LOGF_X(26, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_heapmgr.c:1041:13: note: in expansion of macro ‘CORE_LOGF_X’
1041 | CORE_LOGF_X(27, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_heapmgr.c:1056:9: note: in expansion of macro ‘CORE_LOGF_X’
1056 | CORE_LOGF_X(23, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_heapmgr.c:1143:13: note: in expansion of macro ‘CORE_LOGF_X’
1143 | CORE_LOGF_X(21, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_heapmgr.c:1158:17: note: in expansion of macro ‘CORE_LOGF_X’
1158 | CORE_LOGF_X(20, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_heapmgr.c:1176:13: note: in expansion of macro ‘CORE_LOGF_X’
1176 | CORE_LOGF_X(22, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_heapmgr.c:1187:17: note: in expansion of macro ‘CORE_LOGF_X’
1187 | CORE_LOGF_X(24, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_heapmgr.c: In function ‘HEAP_Walk’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_heapmgr.c:1224:9: note: in expansion of macro ‘CORE_LOG_X’
1224 | CORE_LOG_X(29, eLOG_Warning, "Heap Walk: NULL heap");
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_heapmgr.c: In function ‘HEAP_Next’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_heapmgr.c:1237:9: note: in expansion of macro ‘CORE_LOG_X’
1237 | CORE_LOG_X(34, eLOG_Warning, "Heap Next: NULL heap");
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_heapmgr.c: In function ‘HEAP_Destroy’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_heapmgr.c:1325:9: note: in expansion of macro ‘CORE_LOGF_X’
1325 | CORE_LOGF_X(33, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_service.c: In function ‘SERV_SetImplicitServerType’:
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_service.c:1115:9: warning: pointer ‘svc’ may be used after ‘realloc’ [-Wuse-after-free]
1115 | free(svc);
| ^~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_service.c:1113:25: note: call to ‘realloc’ here
1113 | if (!(buf = (char*) realloc(svc, len + sizeof(CONN_IMPLICIT_SERVER_TYPE)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1114 | + 2/*"=\0"*/) + strlen(typ))) {
| ~~~~~~~~~~~~~
-pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/ncbi_server_info.c -o ncbi_server_info.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/ncbi_host_info.c -o ncbi_host_info.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/ncbi_service.c -o ncbi_service.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/ncbi_sendmail.c -o ncbi_sendmail.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/ncbi_base64.c -o ncbi_base64.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/ncbi_heapmgr.c -o ncbi_heapmgr.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/bIn file included from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_servicep.h:38,
from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_lb.h:35,
from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_lb.c:32:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of ‘int’ [-Wpedantic]
91 | fSERV_IncludePrivate = 0x80000000,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of ‘int’ [-Wpedantic]
92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */
| ^~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:62,
from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket_connector.c:38:
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket_connector.c: In function ‘s_VT_Open’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket_connector.c:172:13: note: in expansion of macro ‘CORE_LOGF_X’
172 | CORE_LOGF_X(33, eLOG_Error,
| ^~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_servicep.h:38,
from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_http_connector.c:39:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of ‘int’ [-Wpedantic]
91 | fSERV_IncludePrivate = 0x80000000,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of ‘int’ [-Wpedantic]
92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */
| ^~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:62,
from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_http_connector.c:38:
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_http_connector.c: In function ‘s_Adjust’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_http_connector.c:580:17: note: in expansion of macro ‘CORE_LOGF_X’
580 | CORE_LOGF_X(2, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_http_connector.c:594:17: note: in expansion of macro ‘CORE_LOGF_X’
594 | CORE_LOGF_X(17, eLOG_Trace,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_http_connector.c:652:17: note: in expansion of macro ‘CORE_LOGF_X’
652 | CORE_LOGF_X(3, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_http_connector.c:663:17: note: in expansion of macro ‘CORE_LOGF_X’
663 | CORE_LOGF_X(18, eLOG_Trace,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_http_connector.c:673:13: note: in expansion of macro ‘CORE_LOGF_X’
673 | CORE_LOGF_X(4, eLOG_Critical,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_http_connector.c:695:9: note: in expansion of macro ‘CORE_LOGF_X’
695 | CORE_LOGF_X(1, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_http_connector.c: In function ‘s_Connect’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_http_connector.c:812:13: note: in expansion of macro ‘CORE_LOGF_X’
812 | CORE_LOGF_X(5, eLOG_Critical,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_http_connector.c:979:21: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’
979 | CORE_LOGF_ERRNO_X(20, eLOG_Error, error,
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_http_connector.c: In function ‘s_ConnectAndSend’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_http_connector.c:1203:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’
1203 | CORE_LOGF_ERRNO_X(6, uuu->reused ? eLOG_Trace : eLOG_Error, error,
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_http_connector.c: In function ‘x_ReadChunkHead’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_http_connector.c:1332:9: note: in expansion of macro ‘CORE_LOGF_X’
1332 | CORE_LOGF_X(23, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_http_connector.c: In function ‘x_ReadChunkTail’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_http_connector.c:1373:9: note: in expansion of macro ‘CORE_LOGF_X’
1373 | CORE_LOGF_X(25, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_http_connector.c: In function ‘s_ReadData’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_http_connector.c:1415:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’
1415 | CORE_LOGF_ERRNO_X(24, eLOG_Error, error,
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_http_connector.c:1439:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’
1439 | CORE_LOGF_ERRNO_X(25, eLOG_Error, error,
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_http_connector.c: In function ‘s_ReadHeader’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_http_connector.c:1516:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’
1516 | CORE_LOGF_ERRNO_X(7, eLOG_Error, error,
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_http_connector.c:1554:13: note: in expansion of macro ‘CORE_LOGF_X’
1554 | CORE_LOGF_X(8, level,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:247:5: note: in expansion of macro ‘DO_CORE_LOG_X’
247 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, data, size)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:199:5: note: in expansion of macro ‘DO_CORE_LOG_DATA’
199 | DO_CORE_LOG_DATA(NCBI_C_ERRCODE_X, subcode, level, data, size, \
| ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_http_connector.c:1623:9: note: in expansion of macro ‘CORE_DATAF_X’
1623 | CORE_DATAF_X(9, fatal ? eLOG_Error : eLOG_Note, hdr, size,
| ^~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_http_connector.c:1640:17: note: in expansion of macro ‘CORE_LOGF_X’
1640 | CORE_LOGF_X(22, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:247:5: note: in expansion of macro ‘DO_CORE_LOG_X’
247 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, data, size)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:199:5: note: in expansion of macro ‘DO_CORE_LOG_DATA’
199 | DO_CORE_LOG_DATA(NCBI_C_ERRCODE_X, subcode, level, data, size, \
| ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_http_connector.c:1659:17: note: in expansion of macro ‘CORE_DATAF_X’
1659 | CORE_DATAF_X(9, eLOG_Note, hdr, size,
| ^~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_http_connector.c:1710:25: note: in expansion of macro ‘CORE_LOGF_X’
1710 | CORE_LOGF_X(10, eLOG_Critical,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’
155 | DO_CORE_LOG(0, 0, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_http_connector.c:1890:21: note: in expansion of macro ‘CORE_LOG’
1890 | CORE_LOG(eLOG_Warning,
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_http_connector.c:1913:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’
1913 | CORE_LOGF_ERRNO_X(11, eLOG_Error, error,
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_http_connector.c:1960:13: note: in expansion of macro ‘CORE_LOGF_X’
1960 | CORE_LOGF_X(19, eLOG_Warning,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_http_connector.c:1965:13: note: in expansion of macro ‘CORE_LOGF_X’
1965 | CORE_LOGF_X(12, err && !(uuu->flags & fHTTP_SuppressMessages)
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_http_connector.c:1976:17: note: in expansion of macro ‘CORE_LOGF_X’
1976 | CORE_LOGF_X(13, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:247:5: note: in expansion of macro ‘DO_CORE_LOG_X’
247 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, data, size)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:199:5: note: in expansion of macro ‘DO_CORE_LOG_DATA’
199 | DO_CORE_LOG_DATA(NCBI_C_ERRCODE_X, subcode, level, data, size, \
| ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_http_connector.c:1984:17: note: in expansion of macro ‘CORE_DATAF_X’
1984 | CORE_DATAF_X(14, eLOG_Note, s, n,
| ^~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_http_connector.c:1993:13: note: in expansion of macro ‘CORE_LOGF_X’
1993 | CORE_LOGF_X(15, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_http_connector.c: In function ‘s_Read’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_http_connector.c:2176:17: note: in expansion of macro ‘CORE_LOGF_X’
2176 | CORE_LOGF_X(16, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_http_connector.c:2224:13: note: in expansion of macro ‘CORE_LOGF_X’
2224 | CORE_LOGF_X(21, eLOG_Warning,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_http_connector.c: In function ‘s_VT_Write’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_http_connector.c:2481:9: note: in expansion of macro ‘CORE_LOGF_X’
2481 | CORE_LOGF_X(24, eLOG_Error,
| ^~~~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/logging'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/logging/message.cpp -o message.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/logging/listener.cpp -o listener.o
/bin/rm -f libxlogging.so .libxlogging.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libxlogging.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC message.o listener.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxlogging.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libxlogging.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libxlogging.so
/bin/ln -f .xlogging.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.xlogging.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/logging'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/logging'
cd util/profile/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=utrtprof UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/profile'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/profile'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/profile'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/profile'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/profile'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/util/profile TMPL=utrtprof -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
uild/ncbi-blast+-iztKfv/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/ncbi_lb.c -o ncbi_lb.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket_connector.c -o ncbi_socket_connector.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/ncbi_file_connector.c -o ncbi_file_connector.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/ncbi_http_connector.c -o ncbi_http_connector.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/ncbi_memory_connector.c -o ncbi_memory_connector.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/ncbi_service_connector.c -o ncbi_service_connector.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<BUILDDIR>>/ncbi-blast+-2.12In file included from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_servicep.h:38,
from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_service_connector.c:36:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of ‘int’ [-Wpedantic]
91 | fSERV_IncludePrivate = 0x80000000,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of ‘int’ [-Wpedantic]
92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */
| ^~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:62,
from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_service_connector.c:35:
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_service_connector.c: In function ‘s_OpenDispatcher’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_service_connector.c:102:9: note: in expansion of macro ‘CORE_LOGF_X’
102 | CORE_LOGF_X(5, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_service_connector.c: In function ‘s_ParseHeader’:
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_service_connector.c:179:49: warning: format ‘%n’ expects argument of type ‘int *’, but argument 7 has type ‘unsigned int *’ [-Wformat=]
179 | if (sscanf(header, "%u.%u.%u.%u%n", &i1, &i2, &i3, &i4, &n) < 4
| ~^ ~~
| | |
| int * unsigned int *
| %n
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_service_connector.c:180:51: warning: format ‘%n’ expects argument of type ‘int *’, but argument 5 has type ‘unsigned int *’ [-Wformat=]
180 | || sscanf(header + n, "%hu%x%n", &uuu->port, &tkt, &m) < 2
| ~^ ~~
| | |
| int * unsigned int *
| %n
In file included from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_servicep.h:38,
from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_ftp_connector.c:51:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of ‘int’ [-Wpedantic]
91 | fSERV_IncludePrivate = 0x80000000,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of ‘int’ [-Wpedantic]
92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_service_connector.c: In function ‘s_Open’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_service_connector.c:947:13: note: in expansion of macro ‘CORE_LOGF_X’
947 | CORE_LOGF_X(4, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_service_connector.c:973:13: note: in expansion of macro ‘CORE_LOGF_X’
973 | CORE_LOGF_X(9, eLOG_Warning,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_service_connector.c: In function ‘s_VT_Open’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_service_connector.c:1166:13: note: in expansion of macro ‘CORE_LOGF_X’
1166 | CORE_LOGF_X(6, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_service_connector.c:1178:9: note: in expansion of macro ‘CORE_LOGF_X’
1178 | CORE_LOGF_X(10, eLOG_Error,
| ^~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:62,
from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_ftp_connector.c:50:
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_ftp_connector.c: In function ‘x_FTPCloseData’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_ftp_connector.c:148:13: note: in expansion of macro ‘CORE_LOGF_X’
148 | CORE_LOGF_X(7, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_ftp_connector.c:153:17: note: in expansion of macro ‘CORE_LOGF_X’
153 | CORE_LOGF_X(9, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_ftp_connector.c:167:17: note: in expansion of macro ‘CORE_LOGF_X’
167 | CORE_LOGF_X(11, eLOG_Warning,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_ftp_connector.c:171:17: note: in expansion of macro ‘CORE_LOGF_X’
171 | CORE_LOGF_X(8, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_ftp_connector.c:188:13: note: in expansion of macro ‘CORE_LOGF_X’
188 | CORE_LOGF_X(1, xxx->send ? eLOG_Error : eLOG_Warning,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_ftp_connector.c: In function ‘s_FTPReply’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_ftp_connector.c:296:17: note: in expansion of macro ‘CORE_LOGF_X’
296 | CORE_LOGF_X(10, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_ftp_connector.c: In function ‘s_FTPCommandEx’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_ftp_connector.c:379:17: note: in expansion of macro ‘CORE_LOGF_X’
379 | CORE_LOGF_X(4, eLOG_Trace,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_ftp_connector.c: In function ‘x_FTPLogin’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_ftp_connector.c:618:9: note: in expansion of macro ‘CORE_LOGF_X’
618 | CORE_LOGF_X(3, eLOG_Trace,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_ftp_connector.c: In function ‘x_FTPPassive’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_ftp_connector.c:976:9: note: in expansion of macro ‘CORE_LOGF_X’
976 | CORE_LOGF_X(2, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_ftp_connector.c: In function ‘x_FTPXfer’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_ftp_connector.c:1138:21: note: in expansion of macro ‘CORE_LOGF_X’
1138 | CORE_LOGF_X(5, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_ftp_connector.c: In function ‘s_FTPPollCntl’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_ftp_connector.c:1668:13: note: in expansion of macro ‘CORE_LOGF_X’
1668 | CORE_LOGF_X(12, xxx->data ? eLOG_Error : eLOG_Warning,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_ftp_connector.c: In function ‘s_VT_Open’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_ftp_connector.c:1939:9: note: in expansion of macro ‘CORE_LOGF_X’
1939 | CORE_LOGF_X(13, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_ftp_connector.c: In function ‘s_VT_Write’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_ftp_connector.c:2014:17: note: in expansion of macro ‘CORE_LOGF_X’
2014 | CORE_LOGF_X(6, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_ftp_connector.c: In function ‘s_CreateConnector’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’
155 | DO_CORE_LOG(0, 0, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_ftp_connector.c:2328:9: note: in expansion of macro ‘CORE_LOG’
2328 | CORE_LOG(eLOG_Critical, "fFTP_UseProxy not yet implemented");
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_servicep.h:38,
from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_lb.h:35,
from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_local.c:36:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of ‘int’ [-Wpedantic]
91 | fSERV_IncludePrivate = 0x80000000,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of ‘int’ [-Wpedantic]
92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */
| ^~~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/sequtil'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/sequtil/sequtil.cpp -o sequtil.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/sequtil/sequtil_convert.cpp -o sequtil_convert.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/sequtil/sequtil_convert_imp.cpp -o sequtil_convert_imp.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/sequtil/sequtil_manip.cpp -o sequtil_manip.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/sequtil/sequtil_tables.cpp -o sequtil_tables.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/sequtil/sequtil_shared.cpp -o sequtil_shared.o
/bin/rm -f libsequtil.so .libsequtil.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libsequtil.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -spIn file included from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_servicep.h:38,
from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_dispd.h:37,
from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_dispd.c:36:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of ‘int’ [-Wpedantic]
91 | fSERV_IncludePrivate = 0x80000000,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of ‘int’ [-Wpedantic]
92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */
| ^~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:62,
from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_dispd.c:38:
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_dispd.c: In function ‘s_Resolve’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_dispd.c:205:9: note: in expansion of macro ‘CORE_LOGF_X’
205 | CORE_LOGF_X(5, eLOG_Error,
| ^~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_servicep.h:38,
from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbosp.h:37,
from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:37:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of ‘int’ [-Wpedantic]
91 | fSERV_IncludePrivate = 0x80000000,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of ‘int’ [-Wpedantic]
92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */
| ^~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:62,
from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:38:
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c: In function ‘g_LBOS_StringConcat’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:431:9: note: in expansion of macro ‘CORE_LOG_X’
431 | CORE_LOG_X(eLBOS_MemAlloc, eLOG_Critical,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c: In function ‘g_LBOS_StringNConcat’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:456:9: note: in expansion of macro ‘CORE_LOG_X’
456 | CORE_LOG_X(eLBOS_MemAlloc, eLOG_Critical,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c: In function ‘g_LBOS_RegGet’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:480:9: note: in expansion of macro ‘CORE_LOG_X’
480 | CORE_LOG_X(eLBOS_MemAlloc, eLOG_Critical,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:494:13: note: in expansion of macro ‘CORE_LOG_X’
494 | CORE_LOG_X(eLBOS_MemAlloc, eLOG_Warning,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c: In function ‘g_LBOS_GetLBOSAddressEx’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’
155 | DO_CORE_LOG(0, 0, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:562:5: note: in expansion of macro ‘CORE_LOG’
562 | CORE_LOG(eLOG_Trace, "Getting LBOS addresses...");
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:576:17: note: in expansion of macro ‘CORE_LOG_X’
576 | CORE_LOG_X(1, eLOG_Error, "Use of custom LBOS address "
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:163:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
163 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:583:17: note: in expansion of macro ‘CORE_LOG_ERRNO_X’
583 | CORE_LOG_ERRNO_X(1, eLOG_Warning, errno,
| ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:591:17: note: in expansion of macro ‘CORE_LOGF_X’
591 | CORE_LOGF_X(1, eLOG_Warning,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:602:17: note: in expansion of macro ‘CORE_LOGF_X’
602 | CORE_LOGF_X(1, eLOG_Note,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_ReadLbosresolver’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:175:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
175 | DO_CORE_LOG_ERRNO(0, 0, level, error, 0, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:721:9: note: in expansion of macro ‘CORE_LOGF_ERRNO’
721 | CORE_LOGF_ERRNO(eLOG_Warning, errno,
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’
243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:175:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’
175 | DO_CORE_LOG_ERRNO(0, 0, level, error, 0, \
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:730:9: note: in expansion of macro ‘CORE_LOGF_ERRNO’
730 | CORE_LOGF_ERRNO(eLOG_Warning, errno,
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro ‘DO_CORE_LOG’
159 | DO_CORE_LOG(0, 0, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:739:9: note: in expansion of macro ‘CORE_LOGF’
739 | CORE_LOGF(eLOG_Warning,
| ^~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_ConnectURL’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro ‘DO_CORE_LOG’
159 | DO_CORE_LOG(0, 0, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:823:5: note: in expansion of macro ‘CORE_LOGF’
823 | CORE_LOGF(eLOG_Trace, ("Parsing URL \"%s\"", url));
| ^~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’
155 | DO_CORE_LOG(0, 0, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:825:9: note: in expansion of macro ‘CORE_LOG’
825 | CORE_LOG(eLOG_Warning, "Cannot parse URL");
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro ‘DO_CORE_LOG’
159 | DO_CORE_LOG(0, 0, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:828:5: note: in expansion of macro ‘CORE_LOGF’
828 | CORE_LOGF(eLOG_Trace, ("Creating HTTP%s connector",
| ^~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’
155 | DO_CORE_LOG(0, 0, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:835:9: note: in expansion of macro ‘CORE_LOG’
835 | CORE_LOG(eLOG_Warning, "Cannot create HTTP connector");
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’
155 | DO_CORE_LOG(0, 0, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:838:5: note: in expansion of macro ‘CORE_LOG’
838 | CORE_LOG(eLOG_Trace, "Creating connection");
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’
155 | DO_CORE_LOG(0, 0, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:840:9: note: in expansion of macro ‘CORE_LOG’
840 | CORE_LOG(eLOG_Warning, "Cannot create connection");
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_UrlReadAll’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’
155 | DO_CORE_LOG(0, 0, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:899:9: note: in expansion of macro ‘CORE_LOG’
899 | CORE_LOG(eLOG_Critical, "s_LBOS_UrlReadAll: No RAM. "
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro ‘DO_CORE_LOG’
159 | DO_CORE_LOG(0, 0, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:911:13: note: in expansion of macro ‘CORE_LOGF’
911 | CORE_LOGF(eLOG_Critical, ("s_LBOS_UrlReadAll: LBOS returned "
| ^~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’
155 | DO_CORE_LOG(0, 0, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:939:17: note: in expansion of macro ‘CORE_LOG’
939 | CORE_LOG(eLOG_Warning, "s_LBOS_UrlReadAll: Buffer "
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’
155 | DO_CORE_LOG(0, 0, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:953:9: note: in expansion of macro ‘CORE_LOG’
953 | CORE_LOG(eLOG_Warning, "s_LBOS_UrlReadAll: Buffer shrink error, using "
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_ResolveIPPort’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’
155 | DO_CORE_LOG(0, 0, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:985:9: note: in expansion of macro ‘CORE_LOG’
985 | CORE_LOG(eLOG_Critical, "s_LBOS_ResolveIPPort: No RAM. "
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’
155 | DO_CORE_LOG(0, 0, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:1044:9: note: in expansion of macro ‘CORE_LOG’
1044 | CORE_LOG(eLOG_Critical, "s_LBOS_ResolveIPPort: No RAM. "
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_FillCandidates’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:1194:5: note: in expansion of macro ‘CORE_LOGF_X’
1194 | CORE_LOGF_X(1, eLOG_Trace, ("Trying to find servers of \"%s\" with "
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:1200:9: note: in expansion of macro ‘CORE_LOGF_X’
1200 | CORE_LOGF_X(1, eLOG_Trace, ("No servers of \"%s\" found by LBOS",
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:1205:5: note: in expansion of macro ‘CORE_LOGF_X’
1205 | CORE_LOGF_X(1, eLOG_Trace, ("Found %u servers of \"%s\" with "
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:1218:13: note: in expansion of macro ‘CORE_LOGF_X’
1218 | CORE_LOGF_X(1, eLOG_Warning,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_CheckAnnounceArgs’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’
155 | DO_CORE_LOG(0, 0, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:1248:9: note: in expansion of macro ‘CORE_LOG’
1248 | CORE_LOG(eLOG_Critical, "Error with announcement, "
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’
155 | DO_CORE_LOG(0, 0, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:1255:9: note: in expansion of macro ‘CORE_LOG’
1255 | CORE_LOG(eLOG_Critical, "Error with announcement, missing http:// or "
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’
155 | DO_CORE_LOG(0, 0, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:1265:17: note: in expansion of macro ‘CORE_LOG’
1265 | CORE_LOG(eLOG_Critical, "Error with announcement, "
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’
155 | DO_CORE_LOG(0, 0, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:1275:9: note: in expansion of macro ‘CORE_LOG’
1275 | CORE_LOG(eLOG_Critical, "Error with announcement, invalid port.");
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’
155 | DO_CORE_LOG(0, 0, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:1279:9: note: in expansion of macro ‘CORE_LOG’
1279 | CORE_LOG(eLOG_Critical, "Error with announcement, "
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’
155 | DO_CORE_LOG(0, 0, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:1284:9: note: in expansion of macro ‘CORE_LOG’
1284 | CORE_LOG(eLOG_Critical, "Error with announcement, "
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’
155 | DO_CORE_LOG(0, 0, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:1289:9: note: in expansion of macro ‘CORE_LOG’
1289 | CORE_LOG(eLOG_Critical, "Error with announcement, "
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_CheckDeannounceArgs’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’
155 | DO_CORE_LOG(0, 0, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:1303:9: note: in expansion of macro ‘CORE_LOG’
1303 | CORE_LOG(eLOG_Critical, "Invalid argument passed for de-announcement, "
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’
155 | DO_CORE_LOG(0, 0, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:1309:9: note: in expansion of macro ‘CORE_LOG’
1309 | CORE_LOG(eLOG_Critical, "Invalid argument passed for de-announcement, "
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’
155 | DO_CORE_LOG(0, 0, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:1314:9: note: in expansion of macro ‘CORE_LOG’
1314 | CORE_LOG(eLOG_Critical, "Invalid argument passed for de-announcement, "
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’
155 | DO_CORE_LOG(0, 0, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:1319:9: note: in expansion of macro ‘CORE_LOG’
1319 | CORE_LOG(eLOG_Critical, "Invalid argument passed for de-announcement, "
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_Replace0000WithIP’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’
155 | DO_CORE_LOG(0, 0, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:1404:9: note: in expansion of macro ‘CORE_LOG’
1404 | CORE_LOG(eLOG_Warning, "Failed memory allocation. Most likely, "
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’
155 | DO_CORE_LOG(0, 0, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:1412:9: note: in expansion of macro ‘CORE_LOG’
1412 | CORE_LOG(eLOG_Warning,
| ^~~~~~~~
ecs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC sequtil.o sequtil_convert.o sequtil_convert_imp.o sequtil_manip.o sequtil_tables.o sequtil_shared.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lxncbi -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsequtil.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libsequtil.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libsequtil.so
/bin/ln -f .sequtil.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.sequtil.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/sequtil'
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’
155 | DO_CORE_LOG(0, 0, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:1419:9: note: in expansion of macro ‘CORE_LOG’
1419 | CORE_LOG(eLOG_Warning,
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_ConstructData’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:1563:9: note: in expansion of macro ‘CORE_LOG_X’
1563 | CORE_LOG_X(1, eLOG_Error, "Could not allocate memory for LBOS mapper");
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_Initialize’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:1638:9: note: in expansion of macro ‘CORE_LOG_X’
1638 | CORE_LOG_X(1, eLOG_Trace, "No DTAB in registry");
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:1640:9: note: in expansion of macro ‘CORE_LOGF_X’
1640 | CORE_LOGF_X(1, eLOG_Trace,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:1654:9: note: in expansion of macro ‘CORE_LOGF_X’
1654 | CORE_LOGF_X(1, eLOG_Warning,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_ParseHeader’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro ‘DO_CORE_LOG’
159 | DO_CORE_LOG(0, 0, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:1702:9: note: in expansion of macro ‘CORE_LOGF’
1702 | CORE_LOGF(eLOG_Critical, ("s_LBOS_UrlReadAll: LBOS returned status "
| ^~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_Reset’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’
155 | DO_CORE_LOG(0, 0, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:1765:17: note: in expansion of macro ‘CORE_LOG’
1765 | CORE_LOG(eLOG_Critical, "s_LBOS_Reset: No RAM. "
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c: In function ‘SERV_LBOS_Open’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’
155 | DO_CORE_LOG(0, 0, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:1868:5: note: in expansion of macro ‘CORE_LOG’
1868 | CORE_LOG(eLOG_Error, "LBOS is deprecated, consider using LBSMD instead.");
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’
155 | DO_CORE_LOG(0, 0, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:1880:9: note: in expansion of macro ‘CORE_LOG’
1880 | CORE_LOG(eLOG_Warning, "Mask was provided instead of service name. "
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’
155 | DO_CORE_LOG(0, 0, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:1888:9: note: in expansion of macro ‘CORE_LOG’
1888 | CORE_LOG(eLOG_Warning, "\"iter->name\" is null, not able "
| ^~~~~~~~
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/sequtil'
cd objtools/blast/gene_info_reader/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=gene_info UNIX_PROJ="" sources= configurables=configurables.null
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’
155 | DO_CORE_LOG(0, 0, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:1903:13: note: in expansion of macro ‘CORE_LOG’
1903 | CORE_LOG(eLOG_Warning, "Could not concatenate dbaf with service "
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’
155 | DO_CORE_LOG(0, 0, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:1918:9: note: in expansion of macro ‘CORE_LOG’
1918 | CORE_LOG(eLOG_Warning,
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’
155 | DO_CORE_LOG(0, 0, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:1932:9: note: in expansion of macro ‘CORE_LOG’
1932 | CORE_LOG(eLOG_Critical,
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_Announce’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’
155 | DO_CORE_LOG(0, 0, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:2047:9: note: in expansion of macro ‘CORE_LOG’
2047 | CORE_LOG(eLOG_Warning, "Announce failed. No LBOS found.");
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro ‘DO_CORE_LOG’
159 | DO_CORE_LOG(0, 0, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:2052:9: note: in expansion of macro ‘CORE_LOGF’
2052 | CORE_LOGF(eLOG_Warning, ("Announce failed. "
| ^~~~~~~~~
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/gene_info_reader'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’
155 | DO_CORE_LOG(0, 0, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:2061:13: note: in expansion of macro ‘CORE_LOG’
2061 | CORE_LOG(eLOG_Warning, "Failed memory allocation. Most likely, "
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’
155 | DO_CORE_LOG(0, 0, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:2071:13: note: in expansion of macro ‘CORE_LOG’
2071 | CORE_LOG(eLOG_Warning, "g_LBOS_Announce: LBOS answered 200 OK, but "
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro ‘DO_CORE_LOG’
159 | DO_CORE_LOG(0, 0, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:2084:9: note: in expansion of macro ‘CORE_LOGF’
2084 | CORE_LOGF(eLOG_Warning, ("Announce failed. "
| ^~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c: In function ‘LBOS_Announce’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:2150:13: note: in expansion of macro ‘CORE_LOG_X’
2150 | CORE_LOG_X(eLBOS_InvalidArgs, eLOG_Critical,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c: In function ‘LBOS_AnnounceFromRegistry’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:2219:13: note: in expansion of macro ‘CORE_LOGF_X’
2219 | CORE_LOGF_X(eLBOS_InvalidArgs, eLOG_Warning,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:2226:53: warning: format ‘%d’ expects argument of type ‘int *’, but argument 3 has type ‘unsigned int *’ [-Wformat=]
2226 | if (strlen(port_str) > 5 || (sscanf(port_str, "%d", &port) != 1) ||
| ~^ ~~~~~
| | |
| | unsigned int *
| int *
| %d
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c: In function ‘LBOS_Deannounce’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:2341:13: note: in expansion of macro ‘CORE_LOG_X’
2341 | CORE_LOG_X(eLBOS_DNSResolve, eLOG_Critical,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c: In function ‘LBOS_DeannounceAll’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:2399:9: note: in expansion of macro ‘CORE_LOG_X’
2399 | CORE_LOG_X(eLBOS_MemAlloc, eLOG_Warning,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_CheckConfArgs’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:2451:9: note: in expansion of macro ‘CORE_LOG_X’
2451 | CORE_LOG_X(eLBOS_InvalidArgs, eLOG_Warning,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:2458:13: note: in expansion of macro ‘CORE_LOGF_X’
2458 | CORE_LOGF_X(eLBOS_InvalidArgs, eLOG_Warning,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c: In function ‘LBOS_ServiceVersionSet’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c:2550:9: note: in expansion of macro ‘CORE_LOG_X’
2550 | CORE_LOG_X(eLBOS_InvalidArgs, eLOG_Warning,
| ^~~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/gene_info_reader'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/gene_info_reader'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/gene_info_reader'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/gene_info_reader'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objtools/blast/gene_info_reader TMPL=gene_info -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_servicep.h:38,
from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_lb.h:35,
from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_linkerd.c:36:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of ‘int’ [-Wpedantic]
91 | fSERV_IncludePrivate = 0x80000000,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of ‘int’ [-Wpedantic]
92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */
| ^~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:62,
from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_once.h:40,
from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_linkerd.c:39:
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_linkerd.c: In function ‘s_SetEndpoint’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_linkerd.c:203:9: note: in expansion of macro ‘CORE_LOGF_X’
203 | CORE_LOGF_X(eLSub_BadData, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_linkerd.c:210:13: note: in expansion of macro ‘CORE_LOG_X’
210 | CORE_LOG_X(eLSub_BadData, eLOG_Error,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_linkerd.c:221:13: note: in expansion of macro ‘CORE_LOG_X’
221 | CORE_LOG_X(eLSub_BadData, eLOG_Error,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_linkerd.c:232:13: note: in expansion of macro ‘CORE_LOG_X’
232 | CORE_LOG_X(eLSub_BadData, eLOG_Error,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_linkerd.c: In function ‘s_EndpointFromNetInfo’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_linkerd.c:271:17: note: in expansion of macro ‘CORE_LOG_X’
271 | CORE_LOG_X(eLSub_BadData, eLOG_Warning,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_linkerd.c:278:9: note: in expansion of macro ‘CORE_LOG_X’
278 | CORE_LOG_X(eLSub_BadData, eLOG_Error,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_linkerd.c: In function ‘s_EndpointFromRegistry’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_linkerd.c:301:9: note: in expansion of macro ‘CORE_LOG_X’
301 | CORE_LOG_X(eLSub_Alloc, eLOG_Critical,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_linkerd.c:310:9: note: in expansion of macro ‘CORE_LOG_X’
310 | CORE_LOG_X(eLSub_Alloc, eLOG_Critical,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_linkerd.c:319:9: note: in expansion of macro ‘CORE_LOG_X’
319 | CORE_LOG_X(eLSub_Alloc, eLOG_Critical,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_linkerd.c:328:9: note: in expansion of macro ‘CORE_LOG_X’
328 | CORE_LOG_X(eLSub_Alloc, eLOG_Critical,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_linkerd.c:337:9: note: in expansion of macro ‘CORE_LOG_X’
337 | CORE_LOG_X(eLSub_Alloc, eLOG_Critical,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_linkerd.c:350:13: note: in expansion of macro ‘CORE_LOG_X’
350 | CORE_LOG_X(eLSub_BadData, eLOG_Warning,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_linkerd.c:356:9: note: in expansion of macro ‘CORE_LOG_X’
356 | CORE_LOG_X(eLSub_BadData, eLOG_Error,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_linkerd.c: In function ‘s_EndpointFromNamerd’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_linkerd.c:381:9: note: in expansion of macro ‘CORE_LOG_X’
381 | CORE_LOG_X(eLSub_Alloc, eLOG_Critical,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_linkerd.c:390:9: note: in expansion of macro ‘CORE_LOG_X’
390 | CORE_LOG_X(eLSub_Alloc, eLOG_Critical,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_linkerd.c:401:9: note: in expansion of macro ‘CORE_LOG_X’
401 | CORE_LOG_X(eLSub_Alloc, eLOG_Critical,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_linkerd.c:410:9: note: in expansion of macro ‘CORE_LOG_X’
410 | CORE_LOG_X(eLSub_Alloc, eLOG_Critical,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_linkerd.c:418:9: note: in expansion of macro ‘CORE_LOG_X’
418 | CORE_LOG_X(eLSub_Logic, eLOG_Critical,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_linkerd.c:428:9: note: in expansion of macro ‘CORE_LOG_X’
428 | CORE_LOG_X(eLSub_Alloc, eLOG_Critical,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_linkerd.c: In function ‘s_Resolve’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_linkerd.c:470:9: note: in expansion of macro ‘CORE_LOGF_X’
470 | CORE_LOGF_X(eLSub_Alloc, eLOG_Critical,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_linkerd.c:496:9: note: in expansion of macro ‘CORE_LOG_X’
496 | CORE_LOG_X(eLSub_Alloc, eLOG_Critical,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_linkerd.c:509:9: note: in expansion of macro ‘CORE_LOGF_X’
509 | CORE_LOGF_X(eLSub_BadData, eLOG_Warning,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_linkerd.c: In function ‘s_GetNextInfo’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_linkerd.c:532:9: note: in expansion of macro ‘CORE_LOG_X’
532 | CORE_LOG_X(eLSub_Logic, eLOG_Critical,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_linkerd.c:538:9: note: in expansion of macro ‘CORE_LOG_X’
538 | CORE_LOG_X(eLSub_Logic, eLOG_Critical,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_linkerd.c:563:13: note: in expansion of macro ‘CORE_LOG_X’
563 | CORE_LOG_X(eLSub_BadData, eLOG_Warning,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_linkerd.c: In function ‘LINKERD_GetHttpProxy’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_linkerd.c:626:9: note: in expansion of macro ‘CORE_LOG_X’
626 | CORE_LOG_X(eLSub_BadData, eLOG_Critical,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_linkerd.c:632:9: note: in expansion of macro ‘CORE_LOG_X’
632 | CORE_LOG_X(eLSub_BadData, eLOG_Critical,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_linkerd.c:638:9: note: in expansion of macro ‘CORE_LOG_X’
638 | CORE_LOG_X(eLSub_BadData, eLOG_Critical,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_linkerd.c:644:9: note: in expansion of macro ‘CORE_LOG_X’
644 | CORE_LOG_X(eLSub_BadData, eLOG_Critical,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_linkerd.c:653:5: note: in expansion of macro ‘CORE_LOGF_X’
653 | CORE_LOGF_X(eLSub_Message, eLOG_Info,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_linkerd.c: In function ‘SERV_LINKERD_Open’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_linkerd.c:671:13: note: in expansion of macro ‘CORE_LOG_X’
671 | CORE_LOG_X(eLSub_Logic, eLOG_Critical,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_linkerd.c:676:13: note: in expansion of macro ‘CORE_LOG_X’
676 | CORE_LOG_X(eLSub_Logic, eLOG_Critical,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_linkerd.c:684:13: note: in expansion of macro ‘CORE_LOG_X’
684 | CORE_LOG_X(eLSub_BadData, eLOG_Error,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_linkerd.c:695:13: note: in expansion of macro ‘CORE_LOGF_X’
695 | CORE_LOGF_X(eLSub_Logic, eLOG_Critical,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_linkerd.c:702:13: note: in expansion of macro ‘CORE_LOGF_X’
702 | CORE_LOGF_X(eLSub_BadData, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_linkerd.c:710:13: note: in expansion of macro ‘CORE_LOG_X’
710 | CORE_LOG_X(eLSub_BadData, eLOG_Error,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_linkerd.c:720:13: note: in expansion of macro ‘CORE_LOG_X’
720 | CORE_LOG_X(eLSub_Alloc, eLOG_Critical,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_linkerd.c:728:13: note: in expansion of macro ‘CORE_LOG_X’
728 | CORE_LOG_X(eLSub_Alloc, eLOG_Critical, "Couldn't clone net_info.");
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_linkerd.c:737:9: note: in expansion of macro ‘CORE_LOG_X’
737 | CORE_LOG_X(eLSub_BadData, eLOG_Error,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_linkerd.c:745:9: note: in expansion of macro ‘CORE_LOG_X’
745 | CORE_LOG_X(eLSub_BadData, eLOG_Error,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_linkerd.c:754:13: note: in expansion of macro ‘CORE_LOG_X’
754 | CORE_LOG_X(eLSub_BadData, eLOG_Error,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_linkerd.c:765:13: note: in expansion of macro ‘CORE_LOG_X’
765 | CORE_LOG_X(eLSub_BadData, eLOG_Error,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_linkerd.c:775:9: note: in expansion of macro ‘CORE_LOG_X’
775 | CORE_LOG_X(eLSub_BadData, eLOG_Error, "No endpoint data found.");
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_linkerd.c:795:17: note: in expansion of macro ‘CORE_LOG_X’
795 | CORE_LOG_X(eLSub_Message, eLOG_Info,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_linkerd.c:799:17: note: in expansion of macro ‘CORE_LOG_X’
799 | CORE_LOG_X(eLSub_Message, eLOG_Info,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_linkerd.c:805:17: note: in expansion of macro ‘CORE_LOG_X’
805 | CORE_LOG_X(eLSub_Message, eLOG_Info,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_linkerd.c:807:17: note: in expansion of macro ‘CORE_LOG_X’
807 | CORE_LOG_X(eLSub_BadData, eLOG_Error,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_linkerd.c:819:13: note: in expansion of macro ‘CORE_LOGF_X’
819 | CORE_LOGF_X(eLSub_Logic, eLOG_Critical,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_linkerd.c:826:9: note: in expansion of macro ‘CORE_LOG_X’
826 | CORE_LOG_X(eLSub_BadData, eLOG_Warning, "Unable to resolve endpoint.");
| ^~~~~~~~~~
.0+ds/c++/include /<<PKGBUILDDIR>>/c++/src/connect/ncbi_ftp_connector.c -o ncbi_ftp_connector.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/ncbi_version.c -o ncbi_version.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/ncbi_iprange.c -o ncbi_iprange.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/ncbi_local.c -o ncbi_local.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/ncbi_dispd.c -o ncbi_dispd.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos.c -o ncbi_lbos.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/ncbi_linkerd.c -o ncbi_linkerd.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2In file included from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_servicep.h:38,
from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_lb.h:35,
from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:36:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of ‘int’ [-Wpedantic]
91 | fSERV_IncludePrivate = 0x80000000,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of ‘int’ [-Wpedantic]
92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */
| ^~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:62,
from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_once.h:40,
from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:39:
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c: In function ‘s_CreateConnectorHttp’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:201:9: note: in expansion of macro ‘CORE_LOG_X’
201 | CORE_LOG_X(eNSub_Logic, eLOG_Critical,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:206:9: note: in expansion of macro ‘CORE_LOG_X’
206 | CORE_LOG_X(eNSub_Logic, eLOG_Critical,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c: In function ‘s_CreateConnectorMemory’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:229:9: note: in expansion of macro ‘CORE_LOG_X’
229 | CORE_LOG_X(eNSub_Logic, eLOG_Critical,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c: In function ‘s_Init’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:273:13: note: in expansion of macro ‘CORE_LOG_X’
273 | CORE_LOG_X(eNSub_Libc, eLOG_Error,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c: In function ‘s_CONN_Create’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:288:9: note: in expansion of macro ‘CORE_LOG_X’
288 | CORE_LOG_X(eNSub_Logic, eLOG_Critical,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:293:9: note: in expansion of macro ‘CORE_LOG_X’
293 | CORE_LOG_X(eNSub_Logic, eLOG_Critical,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:298:9: note: in expansion of macro ‘CORE_LOG_X’
298 | CORE_LOG_X(eNSub_Logic, eLOG_Critical,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:303:9: note: in expansion of macro ‘CORE_LOG_X’
303 | CORE_LOG_X(eNSub_Logic, eLOG_Critical,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:312:13: note: in expansion of macro ‘CORE_LOGF_X’
312 | CORE_LOGF_X(eNSub_Connect, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:321:9: note: in expansion of macro ‘CORE_LOG_X’
321 | CORE_LOG_X(eNSub_Connect, eLOG_Error, "Unable to create connector.");
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c: In function ‘s_CONN_Destroy’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:332:9: note: in expansion of macro ‘CORE_LOG_X’
332 | CORE_LOG_X(eNSub_Logic, eLOG_Critical,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:338:9: note: in expansion of macro ‘CORE_LOG_X’
338 | CORE_LOG_X(eNSub_Logic, eLOG_Critical,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c: In function ‘s_UpdateDtab’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:399:9: note: in expansion of macro ‘CORE_LOG_X’
399 | CORE_LOG_X(eNSub_Alloc, eLOG_Critical, "Couldn't alloc for dtab.");
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c: In function ‘s_GetReqMethod’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:419:9: note: in expansion of macro ‘CORE_LOG_X’
419 | CORE_LOG_X(eNSub_Alloc, eLOG_Critical,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c: In function ‘s_GetScheme’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:441:9: note: in expansion of macro ‘CORE_LOG_X’
441 | CORE_LOG_X(eNSub_Alloc, eLOG_Critical,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c: In function ‘s_GetHttpProxy’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:462:13: note: in expansion of macro ‘CORE_LOG_X’
462 | CORE_LOG_X(eNSub_BadData, eLOG_Critical,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:473:9: note: in expansion of macro ‘CORE_LOG_X’
473 | CORE_LOG_X(eNSub_Alloc, eLOG_Critical,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:484:9: note: in expansion of macro ‘CORE_LOG_X’
484 | CORE_LOG_X(eNSub_Alloc, eLOG_Critical,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c: In function ‘s_RemoveCand’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:499:9: note: in expansion of macro ‘CORE_LOGF_X’
499 | CORE_LOGF_X(eNSub_Logic, eLOG_Critical,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c: In function ‘s_AddServerInfo’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:575:13: note: in expansion of macro ‘CORE_LOG_X’
575 | CORE_LOG_X(eNSub_Alloc, eLOG_Critical,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c: In function ‘s_ParseExpires’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:615:9: note: in expansion of macro ‘CORE_LOG_X’
615 | CORE_LOG_X(eNSub_Logic, eLOG_Critical,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:630:9: note: in expansion of macro ‘CORE_LOGF_X’
630 | CORE_LOGF_X(eNSub_Json, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:675:13: note: in expansion of macro ‘CORE_LOGF_X’
675 | CORE_LOGF_X(eNSub_Json, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:696:9: note: in expansion of macro ‘CORE_LOGF_X’
696 | CORE_LOGF_X(eNSub_Json, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c: In function ‘s_ReadFullResponse’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:735:9: note: in expansion of macro ‘CORE_LOG_X’
735 | CORE_LOG_X(eNSub_Logic, eLOG_Critical,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:740:9: note: in expansion of macro ‘CORE_LOG_X’
740 | CORE_LOG_X(eNSub_Logic, eLOG_Critical,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:751:13: note: in expansion of macro ‘CORE_LOG_X’
751 | CORE_LOG_X(eNSub_Alloc, eLOG_Critical,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:785:13: note: in expansion of macro ‘CORE_LOGF_X’
785 | CORE_LOGF_X(eNSub_HttpRead, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:805:9: note: in expansion of macro ‘CORE_LOG_X’
805 | CORE_LOG_X(eNSub_TooLong, eLOG_Error, "Insufficient buffer size.");
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c: In function ‘s_ParseResponse’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:848:13: note: in expansion of macro ‘CORE_LOG_X’
848 | CORE_LOG_X(eNSub_Json, eLOG_Error,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:853:13: note: in expansion of macro ‘CORE_LOG_X’
853 | CORE_LOG_X(eNSub_Json, eLOG_Error,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:859:13: note: in expansion of macro ‘CORE_LOG_X’
859 | CORE_LOG_X(eNSub_Json, eLOG_Error,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:875:13: note: in expansion of macro ‘CORE_LOG_X’
875 | CORE_LOG_X(eNSub_Json, eLOG_Error,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:880:13: note: in expansion of macro ‘CORE_LOGF_X’
880 | CORE_LOGF_X(eNSub_NoService, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:888:13: note: in expansion of macro ‘CORE_LOG_X’
888 | CORE_LOG_X(eNSub_Json, eLOG_Error,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:935:17: note: in expansion of macro ‘CORE_LOG_X’
935 | CORE_LOG_X(eNSub_Json, eLOG_Error,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:943:17: note: in expansion of macro ‘CORE_LOG_X’
943 | CORE_LOG_X(eNSub_Json, eLOG_Error,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:956:17: note: in expansion of macro ‘CORE_LOG_X’
956 | CORE_LOG_X(eNSub_Json, eLOG_Error,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:962:17: note: in expansion of macro ‘CORE_LOGF_X’
962 | CORE_LOGF_X(eNSub_Json, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:975:17: note: in expansion of macro ‘CORE_LOGF_X’
975 | CORE_LOGF_X(eNSub_Json, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:1002:21: note: in expansion of macro ‘CORE_LOGF_X’
1002 | CORE_LOGF_X(eNSub_Json, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:1027:21: note: in expansion of macro ‘CORE_LOG_X’
1027 | CORE_LOG_X(eNSub_Json, eLOG_Error,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:1037:21: note: in expansion of macro ‘CORE_LOGF_X’
1037 | CORE_LOGF_X(eNSub_Json, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:1054:17: note: in expansion of macro ‘CORE_LOGF_X’
1054 | CORE_LOGF_X(eNSub_Json, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:1077:21: note: in expansion of macro ‘CORE_LOGF_X’
1077 | CORE_LOGF_X(eNSub_Json, eLOG_Trace,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:1096:21: note: in expansion of macro ‘CORE_LOG_X’
1096 | CORE_LOG_X(eNSub_Json, eLOG_Trace,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:1101:21: note: in expansion of macro ‘CORE_LOG_X’
1101 | CORE_LOG_X(eNSub_Json, eLOG_Trace,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:1119:17: note: in expansion of macro ‘CORE_LOG_X’
1119 | CORE_LOG_X(eNSub_Alloc, eLOG_Critical,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:1136:17: note: in expansion of macro ‘CORE_LOGF_X’
1136 | CORE_LOGF_X(eNSub_BadData, eLOG_Warning,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:1149:17: note: in expansion of macro ‘CORE_LOG_X’
1149 | CORE_LOG_X(eNSub_Alloc, eLOG_Critical,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c: In function ‘s_GetDtabHeaderFromBuf’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:1194:13: note: in expansion of macro ‘CORE_LOG_X’
1194 | CORE_LOG_X(eNSub_Alloc, eLOG_Critical,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c: In function ‘s_UpdateDtabFromRegistry’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:1257:9: note: in expansion of macro ‘CORE_LOG_X’
1257 | CORE_LOG_X(eNSub_Alloc, eLOG_Critical,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c: In function ‘s_ProcessDtab’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:1293:9: note: in expansion of macro ‘CORE_LOG_X’
1293 | CORE_LOG_X(eNSub_TooLong, eLOG_Error, "Dtab too long.");
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c: In function ‘s_Resolve’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:1352:9: note: in expansion of macro ‘CORE_LOG_X’
1352 | CORE_LOG_X(eNSub_Logic, eLOG_Critical,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c: In function ‘s_GetNextInfo’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:1426:9: note: in expansion of macro ‘CORE_LOG_X’
1426 | CORE_LOG_X(eNSub_Logic, eLOG_Critical,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:1431:9: note: in expansion of macro ‘CORE_LOG_X’
1431 | CORE_LOG_X(eNSub_Logic, eLOG_Critical,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c: In function ‘s_Reset’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:1477:9: note: in expansion of macro ‘CORE_LOG_X’
1477 | CORE_LOG_X(eNSub_Logic, eLOG_Critical,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:1487:17: note: in expansion of macro ‘CORE_LOGF_X’
1487 | CORE_LOGF_X(eNSub_Logic, eLOG_Critical,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c: In function ‘SERV_NAMERD_Open’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:1542:9: note: in expansion of macro ‘CORE_LOG_X’
1542 | CORE_LOG_X(eNSub_Logic, eLOG_Critical,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:1550:9: note: in expansion of macro ‘CORE_LOG_X’
1550 | CORE_LOG_X(eNSub_BadData, eLOG_Error,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:1556:9: note: in expansion of macro ‘CORE_LOG_X’
1556 | CORE_LOG_X(eNSub_BadData, eLOG_Error,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’
151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:1564:9: note: in expansion of macro ‘CORE_LOGF_X’
1564 | CORE_LOGF_X(eNSub_BadData, eLOG_Error,
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:1573:9: note: in expansion of macro ‘CORE_LOG_X’
1573 | CORE_LOG_X(eNSub_BadData, eLOG_Error,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:1580:9: note: in expansion of macro ‘CORE_LOG_X’
1580 | CORE_LOG_X(eNSub_Alloc, eLOG_Critical,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:1592:13: note: in expansion of macro ‘CORE_LOG_X’
1592 | CORE_LOG_X(eNSub_Alloc, eLOG_Critical, "Couldn't create net_info.");
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:1602:9: note: in expansion of macro ‘CORE_LOG_X’
1602 | CORE_LOG_X(eNSub_Alloc, eLOG_Critical, "Couldn't clone net_info.");
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’
147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c:1615:9: note: in expansion of macro ‘CORE_LOG_X’
1615 | CORE_LOG_X(eNSub_BadData, eLOG_Critical,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/parson.c: In function ‘x_json_object_add’:
/<<PKGBUILDDIR>>/c++/src/connect/parson.c:135:5: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation]
135 | strncpy(output_string, string, n);
| ^
In function ‘parson_strdup’,
inlined from ‘x_json_object_add’ at /<<PKGBUILDDIR>>/c++/src/connect/parson.c:318:28:
/<<PKGBUILDDIR>>/c++/src/connect/parson.c:140:12: note: length computed here
140 | return parson_strndup(string, strlen(string));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_servicep.h:38,
from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_localip.c:36:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of ‘int’ [-Wpedantic]
91 | fSERV_IncludePrivate = 0x80000000,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of ‘int’ [-Wpedantic]
92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/parson.c: In function ‘x_json_value_init_string’:
/<<PKGBUILDDIR>>/c++/src/connect/parson.c:135:5: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation]
135 | strncpy(output_string, string, n);
| ^
/<<PKGBUILDDIR>>/c++/src/connect/parson.c:1119:18: note: length computed here
1119 | string_len = strlen(string);
| ^~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/parson.c: In function ‘x_json_parse_string_with_comments’:
/<<PKGBUILDDIR>>/c++/src/connect/parson.c:135:5: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation]
135 | strncpy(output_string, string, n);
| ^
In function ‘parson_strdup’,
inlined from ‘x_json_parse_string_with_comments’ at /<<PKGBUILDDIR>>/c++/src/connect/parson.c:913:27:
/<<PKGBUILDDIR>>/c++/src/connect/parson.c:140:12: note: length computed here
140 | return parson_strndup(string, strlen(string));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/parson.c: In function ‘x_json_value_deep_copy’:
/<<PKGBUILDDIR>>/c++/src/connect/parson.c:135:5: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation]
135 | strncpy(output_string, string, n);
| ^
In function ‘parson_strdup’,
inlined from ‘x_json_value_deep_copy’ at /<<PKGBUILDDIR>>/c++/src/connect/parson.c:1213:32:
/<<PKGBUILDDIR>>/c++/src/connect/parson.c:140:12: note: length computed here
140 | return parson_strndup(string, strlen(string));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
cd html/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=html UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/html'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/html'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/html'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/html'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/html'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/html TMPL=html -w -j4 --jobserver-auth=7,8 all
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_core_cxx.cpp:40:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/ncbi_namerd.c -o ncbi_namerd.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/parson.c -o parson.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/ncbi_localip.c -o ncbi_localip.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/ncbi_socket_cxx.cpp -o ncbi_socket_cxx.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/ncbi_core_cxx.cpp -o ncbi_core_cxx.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/email_diag_handler.cpp -o email_diag_handler.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARIn file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbitime.hpp:65,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_system.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbifile.hpp:53,
from /<<PKGBUILDDIR>>/c++/src/util/profile/rtprofile.cpp:2:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {ncbi::CStopWatch}; _Tp = ncbi::CStopWatch; _Alloc = std::allocator<ncbi::CStopWatch>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<ncbi::CStopWatch>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ncbi::CStopWatch}; _Tp = ncbi::CStopWatch; _Alloc = std::allocator<ncbi::CStopWatch>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = ncbi::CStopWatch; _Alloc = std::allocator<ncbi::CStopWatch>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘ncbi::CRtProfiler::CRtProfiler(size_t)’ at /<<PKGBUILDDIR>>/c++/src/util/profile/rtprofile.cpp:25:23:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::CStopWatch*, std::vector<ncbi::CStopWatch> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ncbi::CStopWatch}; _Tp = ncbi::CStopWatch; _Alloc = std::allocator<ncbi::CStopWatch>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = ncbi::CStopWatch; _Alloc = std::allocator<ncbi::CStopWatch>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void ncbi::CRtProfiler::Allocate(size_t)’ at /<<PKGBUILDDIR>>/c++/src/util/profile/rtprofile.cpp:34:23:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::CStopWatch*, std::vector<ncbi::CStopWatch> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/map:60,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:45:
/usr/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, ncbi::CStopWatch>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, ncbi::CStopWatch> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, ncbi::CStopWatch> >]’:
/usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, ncbi::CStopWatch>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, ncbi::CStopWatch> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, ncbi::CStopWatch> > >::const_iterator’ changed in GCC 7.1
2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp:37:
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
108 | auto_ptr<CMemoryFile> m_memGi2GeneFile;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbithr_conf.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimtx.hpp:62,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbienv.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/env_reg.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp:35:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
111 | auto_ptr<CMemoryFile> m_memGene2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
114 | auto_ptr<CMemoryFile> m_memGi2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
117 | auto_ptr<CMemoryFile> m_memGene2GiFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /usr/include/c++/12/map:61:
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = ncbi::CStopWatch; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, ncbi::CStopWatch> >]’,
inlined from ‘void ncbi::CRtProfiler::Allocate(std::string)’ at /<<PKGBUILDDIR>>/c++/src/util/profile/rtprofile.cpp:41:23,
inlined from ‘void ncbi::CRtProfiler::Allocate(std::string)’ at /<<PKGBUILDDIR>>/c++/src/util/profile/rtprofile.cpp:37:6:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, ncbi::CStopWatch>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, ncbi::CStopWatch> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, ncbi::CStopWatch> > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = ncbi::CStopWatch; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, ncbi::CStopWatch> >]’,
inlined from ‘void ncbi::CRtProfiler::Start(std::string)’ at /<<PKGBUILDDIR>>/c++/src/util/profile/rtprofile.cpp:50:23:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, ncbi::CStopWatch>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, ncbi::CStopWatch> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, ncbi::CStopWatch> > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = ncbi::CStopWatch; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, ncbi::CStopWatch> >]’,
inlined from ‘void ncbi::CRtProfiler::Stop(std::string)’ at /<<PKGBUILDDIR>>/c++/src/util/profile/rtprofile.cpp:69:23,
inlined from ‘void ncbi::CRtProfiler::Stop(std::string)’ at /<<PKGBUILDDIR>>/c++/src/util/profile/rtprofile.cpp:66:6:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, ncbi::CStopWatch>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, ncbi::CStopWatch> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, ncbi::CStopWatch> > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = ncbi::CStopWatch; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, ncbi::CStopWatch> >]’,
inlined from ‘std::string ncbi::CRtProfiler::AsString(std::string, const ncbi::CTimeFormat&)’ at /<<PKGBUILDDIR>>/c++/src/util/profile/rtprofile.cpp:117:30:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, ncbi::CStopWatch>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, ncbi::CStopWatch> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, ncbi::CStopWatch> > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/profile'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/profile/rtprofile.cpp -o rtprofile.o
/bin/rm -f libutrtprof.so .libutrtprof.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libutrtprof.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC rtprofile.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libutrtprof.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libutrtprof.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libutrtprof.so
/bin/ln -f .utrtprof.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.utrtprof.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/profile'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/profile'
cd corelib/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=test_boost UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/corelib'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/corelib'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/corelib'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/corelib'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/corelib'
/usr/bin/make[4] (Makefile.test_boost.lib): Nothing to be done for `all'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/corelib'
cd util/xregexp/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xregexp UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/xregexp'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/xregexp'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/xregexp'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/xregexp'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/xregexp'
/usr/bin/make[4] (Makefile.xregexp.lib): Nothing to be done for `all'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/xregexp'
cd util/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=util UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util'
/usr/bin/make[4] (Makefile.util.lib): Nothing to be done for `all'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util'
cd serial/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=serial UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/serial'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/serial'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/serial'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/serial'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/serial'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/serial TMPL=serial -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/gene_info_reader'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/blast/gene_info_reader/gene_info.cpp -o gene_info.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp -o gene_info_reader.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/blast/gene_info_reader/file_utils.cpp -o file_utils.o
/bin/rm -f libgene_info.so .libgene_info.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libgene_info.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC gene_info.o gene_info_reader.o file_utils.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lxncbi -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgene_info.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libgene_info.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libgene_info.so
/bin/ln -f .gene_info.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.gene_info.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/gene_info_reader'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/gene_info_reader'
cd util/compress/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=compress UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/compress/api'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/compress/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/compress/api'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/compress/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/compress/api'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/util/compress/api TMPL=compress -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/serial/typeinfo.cpp:41:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbitime.hpp:65,
from /<<PKGBUILDDIR>>/c++/include/corelib/interprocess_lock.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_process.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbithr.hpp:46,
from /<<PKGBUILDDIR>>/c++/src/serial/typeinfo.cpp:35:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/compress/api'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/compress/api/compress.cpp -o compress.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/compress/api/stream.cpp -o stream.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/compress/api/streambuf.cpp -o streambuf.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/compress/api/stream_util.cpp -o stream_util.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/compress/api/bzip2.cpp -o bzip2.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/compress/api/zlib.cpp -o zlib.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformake[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/html'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/html/node.cpp -o node.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/html/html.cpp -o html.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/html/htmlhelper.cpp -o htmlhelper.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/html/page.cpp -o page.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/html/pager.cpp -o pager.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/html/selection.cpp -o selection.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time GEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/ncbi_conn_streambuf.cpp -o ncbi_conn_streambuf.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/ncbi_conn_stream.cpp -o ncbi_conn_stream.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/ncbi_conn_test.cpp -o ncbi_conn_test.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/ncbi_misc.cpp -o ncbi_misc.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/ncbi_namedpipe.cpp -o ncbi_namedpipe.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/ncbi_namedpipe_connector.cpp -o ncbi_namedpipe_connector.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/ncbi_pipe.cpp -o nmake[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/serial'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/serial/hookdata.cpp -o hookdata.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/serial/hookdatakey.cpp -o hookdatakey.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/serial/typeinfo.cpp -o typeinfo.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/serial/objectinfo.cpp -o objectinfo.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/serial/objectiter.cpp -o objectiter.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/serial/objectio.cpp -o objectio.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FIL/<<PKGBUILDDIR>>/c++/src/connect/ncbi_pipe.cpp: In constructor ‘ncbi::CPipe::CPipe(const std::string&, const std::vector<std::__cxx11::basic_string<char> >&, TCreateFlags, const std::string&, const char* const*, size_t)’:
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_pipe.cpp:1856:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1856 | auto_ptr<CPipeHandle> pipe_handle_ptr(new CPipeHandle);
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbictype.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistre.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_stack.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/connect/error_codes.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_pipe.cpp:40:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/serial/typeref.cpp:37:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialdef.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/serial/impl/typeref.hpp:35,
from /<<PKGBUILDDIR>>/c++/src/serial/typeref.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
cbi_pipe.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/ncbi_pipe_connector.cpp -o ncbi_pipe_connector.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/ncbi_conn_reader_writer.cpp -o ncbi_conn_reader_writer.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/ncbi_userhost.cpp -o ncbi_userhost.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/ncbi_http_session.cpp -o ncbi_http_session.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos_cxx.cpp -o ncbi_lbos_cxx.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/ncbi_monkey.cpp -o ncbi_monkey.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_lbos_cxx.cpp:35:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
-D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/html/components.cpp -o components.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/html/commentdiag.cpp -o commentdiag.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/html/indentstream.cpp -o indentstream.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/html/html_exception.cpp -o html_exception.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/html/writer_htmlenc.cpp -o writer_htmlenc.o
/bin/rm -f libxhtml.so .libxhtml.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libxhtml.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC node.o html.o htmlhelper.o page.o pager.o selection.o components.o commentdiag.o indentstream.o html_exception.o writer_htmlenc.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lxncbi -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxhtml.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libxhtml.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libxhtml.so
/bin/ln -f .xhtml.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.xhtml.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/html'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/html'
cd cgi/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=cgi UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/cgi'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/cgi'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/cgi'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/cgi'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/cgi'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/cgi TMPL=cgi -w -j4 --jobserver-auth=7,8 all
/<<PKGBUILDDIR>>/c++/BUILD/bin/run_with_lock: Adjusting base from make_cgi to make__cgi_common per /<<PKGBUILDDIR>>/c++/src/cgi/.#lock-map.
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/cgi/ncbicgi.cpp:39:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/cgi/cgictx.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/cgi/cgictx.cpp:40:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/cgi/cgictx.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/cgi/ncbicgir.cpp:39:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/cgi/cgictx.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/cgi/cgiapp.cpp:45:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbithr_conf.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimtx.hpp:62,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbireg.hpp:49,
from /<<PKGBUILDDIR>>/c++/include/connect/ncbi_core_cxx.hpp:40,
from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_service_cxx.cpp:35:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {ncbi::CSERV_Info}; _Tp = ncbi::CSERV_Info; _Alloc = std::allocator<ncbi::CSERV_Info>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<ncbi::CSERV_Info>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ncbi::CSERV_Info}; _Tp = ncbi::CSERV_Info; _Alloc = std::allocator<ncbi::CSERV_Info>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = ncbi::CSERV_Info; _Alloc = std::allocator<ncbi::CSERV_Info>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘std::vector<ncbi::CSERV_Info> ncbi::SERV_GetServers(const std::string&, TSERV_Type)’ at /<<PKGBUILDDIR>>/c++/src/connect/ncbi_service_cxx.cpp:77:34:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::CSERV_Info*, std::vector<ncbi::CSERV_Info> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/list:63,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_stack.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/util/compress/api/archive.cpp:34:
/usr/include/c++/12/bits/stl_list.h: In member function ‘void std::__cxx11::list<_Tp, _Alloc>::_M_insert(iterator, _Args&& ...) [with _Args = {const ncbi::CArchiveEntryInfo&}; _Tp = ncbi::CArchiveEntryInfo; _Alloc = std::allocator<ncbi::CArchiveEntryInfo>]’:
/usr/include/c++/12/bits/stl_list.h:2003:8: note: parameter passing for argument of type ‘std::__cxx11::list<ncbi::CArchiveEntryInfo>::iterator’ changed in GCC 7.1
2003 | _M_insert(iterator __position, _Args&&... __args)
| ^~~~~~~~~
In member function ‘void std::__cxx11::list<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ncbi::CArchiveEntryInfo; _Alloc = std::allocator<ncbi::CArchiveEntryInfo>]’,
inlined from ‘virtual std::unique_ptr<std::__cxx11::list<ncbi::CArchiveEntryInfo> > ncbi::CArchive::AppendFileFromMemory(const std::string&, void*, size_t, ELevel, const std::string&)’ at /<<PKGBUILDDIR>>/c++/src/util/compress/api/archive.cpp:475:23:
/usr/include/c++/12/bits/stl_list.h:1306:24: note: parameter passing for argument of type ‘std::_List_iterator<ncbi::CArchiveEntryInfo>’ changed in GCC 7.1
1306 | { this->_M_insert(end(), __x); }
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::__cxx11::list<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ncbi::CArchiveEntryInfo; _Alloc = std::allocator<ncbi::CArchiveEntryInfo>]’,
inlined from ‘std::unique_ptr<std::__cxx11::list<ncbi::CArchiveEntryInfo> > ncbi::CArchive::x_Append(const std::string&, ELevel, const std::string&, const TEntries*)’ at /<<PKGBUILDDIR>>/c++/src/util/compress/api/archive.cpp:1044:31:
/usr/include/c++/12/bits/stl_list.h:1306:24: note: parameter passing for argument of type ‘std::_List_iterator<ncbi::CArchiveEntryInfo>’ changed in GCC 7.1
1306 | { this->_M_insert(end(), __x); }
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::__cxx11::list<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ncbi::CArchiveEntryInfo; _Alloc = std::allocator<ncbi::CArchiveEntryInfo>]’,
inlined from ‘std::unique_ptr<std::__cxx11::list<ncbi::CArchiveEntryInfo> > ncbi::CArchive::x_Append(const std::string&, ELevel, const std::string&, const TEntries*)’ at /<<PKGBUILDDIR>>/c++/src/util/compress/api/archive.cpp:1057:31:
/usr/include/c++/12/bits/stl_list.h:1306:24: note: parameter passing for argument of type ‘std::_List_iterator<ncbi::CArchiveEntryInfo>’ changed in GCC 7.1
1306 | { this->_M_insert(end(), __x); }
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::__cxx11::list<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ncbi::CArchiveEntryInfo; _Alloc = std::allocator<ncbi::CArchiveEntryInfo>]’,
inlined from ‘std::unique_ptr<std::__cxx11::list<ncbi::CArchiveEntryInfo> > ncbi::CArchive::x_Append(const std::string&, ELevel, const std::string&, const TEntries*)’ at /<<PKGBUILDDIR>>/c++/src/util/compress/api/archive.cpp:1066:35:
/usr/include/c++/12/bits/stl_list.h:1306:24: note: parameter passing for argument of type ‘std::_List_iterator<ncbi::CArchiveEntryInfo>’ changed in GCC 7.1
1306 | { this->_M_insert(end(), __x); }
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/serial/stdtypes.cpp: In static member function ‘static void ncbi::CPrimitiveTypeFunctions<T>::Skip(ncbi::CObjectIStream&, ncbi::TTypeInfo) [with T = long double]’:
/<<PKGBUILDDIR>>/c++/src/serial/stdtypes.cpp:147:23: warning: ‘data’ may be used uninitialized [-Wmaybe-uninitialized]
147 | in.SkipStd(data);
| ~~~~~~~~~~^~~~~~
/<<PKGBUILDDIR>>/c++/src/serial/stdtypes.cpp:147:23: note: by argument 2 of type ‘const long double&’ to ‘void (ncbi::CObjectIStream::)(const long double&)’
/<<PKGBUILDDIR>>/c++/src/serial/stdtypes.cpp:146:25: note: ‘data’ declared here
146 | TObjectType data;
| ^~~~
SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/ncbi_service_cxx.cpp -o ncbi_service_cxx.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/ncbi_localip_cxx.cpp -o ncbi_localip_cxx.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/ncbi_blowfish.c -o ncbi_blowfish.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/ncbi_usage_report.cpp -o ncbi_usage_report.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/connect_misc.cpp -o connect_misc.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/ncbi_gnutls.c -o ncbi_gnutls.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<BUILDDIR>>/ncbi-blast+-2.12.0+dIn file included from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_mbedtls.c:34:
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connssl.h:48:25: warning: ISO C restricts enumerator values to range of ‘int’ [-Wpedantic]
48 | eNcbiCred_MbedTls = 0xC12CC114
| ^~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_gnutls.c:34:
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connssl.h:48:25: warning: ISO C restricts enumerator values to range of ‘int’ [-Wpedantic]
48 | eNcbiCred_MbedTls = 0xC12CC114
| ^~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_servicep.h:38,
from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_mbedtls.c:36:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of ‘int’ [-Wpedantic]
91 | fSERV_IncludePrivate = 0x80000000,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of ‘int’ [-Wpedantic]
92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */
| ^~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_servicep.h:38,
from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_gnutls.c:36:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of ‘int’ [-Wpedantic]
91 | fSERV_IncludePrivate = 0x80000000,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of ‘int’ [-Wpedantic]
92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */
| ^~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:62,
from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_gnutls.c:35:
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_gnutls.c: In function ‘s_GnuTlsInit’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’
155 | DO_CORE_LOG(0, 0, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_gnutls.c:811:5: note: in expansion of macro ‘CORE_LOG’
811 | CORE_LOG(eLOG_Critical, "Unavailable feature GNUTLS");
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_gnutls.c: In function ‘NcbiSetupGnuTls’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’
155 | DO_CORE_LOG(0, 0, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_gnutls.c:836:5: note: in expansion of macro ‘CORE_LOG’
836 | CORE_LOG(eLOG_Warning, "Unavailable feature GNUTLS");
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_tls.c:34:
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_connssl.h:48:25: warning: ISO C restricts enumerator values to range of ‘int’ [-Wpedantic]
48 | eNcbiCred_MbedTls = 0xC12CC114
| ^~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_servicep.h:38,
from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_tls.c:36:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of ‘int’ [-Wpedantic]
91 | fSERV_IncludePrivate = 0x80000000,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of ‘int’ [-Wpedantic]
92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */
| ^~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:62,
from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_tls.c:35:
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_tls.c: In function ‘s_NoTlsInit’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’
155 | DO_CORE_LOG(0, 0, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_tls.c:60:5: note: in expansion of macro ‘CORE_LOG’
60 | CORE_LOG(eLOG_Critical, "SSL has been explicitly disabled");
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_tls.c: In function ‘x_SetupNoTls’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’
155 | DO_CORE_LOG(0, 0, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_tls.c:71:5: note: in expansion of macro ‘CORE_LOG’
71 | CORE_LOG(eLOG_Trace, "SSL has been explicitly disabled");
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_tls.c: In function ‘NcbiSetupTls’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro ‘DO_CORE_LOG’
159 | DO_CORE_LOG(0, 0, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_tls.c:93:17: note: in expansion of macro ‘CORE_LOGF’
93 | CORE_LOGF(eLOG_Critical, ("Unknown TLS provider \"%s\"", str));
| ^~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’
155 | DO_CORE_LOG(0, 0, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_tls.c:97:13: note: in expansion of macro ‘CORE_LOG’
97 | CORE_LOG(eLOG_Critical, "No TLS support included in this build");
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:62,
from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_mbedtls.c:35:
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_mbedtls.c: In function ‘x_MbedTlsLogger’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro ‘DO_CORE_LOG’
159 | DO_CORE_LOG(0, 0, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_mbedtls.c:169:5: note: in expansion of macro ‘CORE_LOGF’
169 | CORE_LOGF(eLOG_Note, ("MBEDTLS%d: %.*s", level, (int) len, message));
| ^~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_mbedtls.c: In function ‘s_MbedTlsCreate’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’
155 | DO_CORE_LOG(0, 0, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_mbedtls.c:331:9: note: in expansion of macro ‘CORE_LOG’
331 | CORE_LOG(eLOG_Error, "Server-side SSL not yet supported with MBEDTLS");
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro ‘DO_CORE_LOG’
159 | DO_CORE_LOG(0, 0, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_mbedtls.c:339:13: note: in expansion of macro ‘CORE_LOGF’
339 | CORE_LOGF(eLOG_Error,
| ^~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_mbedtls.c: In function ‘s_MbedTlsWrite’:
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_mbedtls.c:551:9: warning: ‘mbedtls_ssl_get_max_frag_len’ is deprecated [-Wdeprecated-declarations]
551 | = mbedtls_ssl_get_max_frag_len((mbedtls_ssl_context*) session);
| ^
In file included from /usr/include/mbedtls/debug.h:31,
from /<<PKGBUILDDIR>>/c++/src/connect/ncbi_mbedtls.c:44:
/usr/include/mbedtls/ssl.h:3842:27: note: declared here
3842 | MBEDTLS_DEPRECATED size_t mbedtls_ssl_get_max_frag_len(
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_mbedtls.c: In function ‘s_MbedTlsInit’:
/<<PKGBUILDDIR>>/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic]
166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’
224 | _mess.func = CORE_CURRENT_FUNCTION; \
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’
239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro ‘DO_CORE_LOG’
159 | DO_CORE_LOG(0, 0, level, \
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/ncbi_mbedtls.c:704:9: note: in expansion of macro ‘CORE_LOGF’
704 | CORE_LOGF(level, ("%s V%s (LogLevel=%d)",
| ^~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/cgi/cgictx.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/cgi/ncbires.cpp:38:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/connect/connect_misc_impl.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/connect/connect_misc.cpp:34:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {ncbi::SSocketAddress, const double&}; _Tp = std::pair<ncbi::SSocketAddress, double>; _Alloc = std::allocator<std::pair<ncbi::SSocketAddress, double> >]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<std::pair<ncbi::SSocketAddress, double> >::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ncbi::SSocketAddress, const double&}; _Tp = std::pair<ncbi::SSocketAddress, double>; _Alloc = std::allocator<std::pair<ncbi::SSocketAddress, double> >]’,
inlined from ‘static ncbi::CServiceDiscovery::TServers ncbi::CServiceDiscovery::DiscoverImpl(const std::string&, unsigned int, std::shared_ptr<void>&, std::pair<std::__cxx11::basic_string<char>, const char*>, int, long unsigned int)’ at /<<PKGBUILDDIR>>/c++/src/connect/connect_misc.cpp:167:36:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<ncbi::SSocketAddress, double>*, std::vector<std::pair<ncbi::SSocketAddress, double> > >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/cgi'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/cgi/ncbicgi.cpp -o ncbicgi.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/cgi/cgiapp.cpp -o cgiapp.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/cgi/cgictx.cpp -o cgictx.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/cgi/ncbicgir.cpp -o ncbicgir.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/cgi/ncbires.cpp -o ncbires.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/cgi/ref_args.cpp -o ref_args.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/cgi/cgi_run.cpp:35:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/list:63,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_stack.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbitime.hpp:65,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_system.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbifile.hpp:53,
from /<<PKGBUILDDIR>>/c++/include/util/compress/tar.hpp:53,
from /<<PKGBUILDDIR>>/c++/src/util/compress/api/tar.cpp:53:
/usr/include/c++/12/bits/stl_list.h: In member function ‘void std::__cxx11::list<_Tp, _Alloc>::_M_insert(iterator, _Args&& ...) [with _Args = {const ncbi::CTarEntryInfo&}; _Tp = ncbi::CTarEntryInfo; _Alloc = std::allocator<ncbi::CTarEntryInfo>]’:
/usr/include/c++/12/bits/stl_list.h:2003:8: note: parameter passing for argument of type ‘std::__cxx11::list<ncbi::CTarEntryInfo>::iterator’ changed in GCC 7.1
2003 | _M_insert(iterator __position, _Args&&... __args)
| ^~~~~~~~~
E_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/serial/typeref.cpp -o typeref.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/serial/typemap.cpp -o typemap.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/serial/stdtypes.cpp -o stdtypes.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/serial/enumerated.cpp -o enumerated.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/serial/ptrinfo.cpp -o ptrinfo.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/serial/autoptrinfo.cpp -o autoptrinfo.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/serial/continfo.cpp -o continfo.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 s/c++/include /<<PKGBUILDDIR>>/c++/src/connect/ncbi_mbedtls.c -o ncbi_mbedtls.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/ncbi_tls.c -o ncbi_tls.o
/bin/rm -f libxconnect.so .libxconnect.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libxconnect.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -Wl,--as-needed -fPIC ncbi_lbsmd_stub.o ncbi_ansi_ext.o ncbi_types.o ncbi_core.o ncbi_priv.o ncbi_util.o ncbi_buffer.o ncbi_socket.o ncbi_connector.o ncbi_connection.o ncbi_connutil.o ncbi_ipv6.o ncbi_server_info.o ncbi_host_info.o ncbi_service.o ncbi_sendmail.o ncbi_base64.o ncbi_heapmgr.o ncbi_lb.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_service_connector.o ncbi_ftp_connector.o ncbi_version.o ncbi_iprange.o ncbi_local.o ncbi_dispd.o ncbi_lbos.o ncbi_linkerd.o ncbi_namerd.o parson.o ncbi_localip.o ncbi_socket_cxx.o ncbi_core_cxx.o email_diag_handler.o ncbi_conn_streambuf.o ncbi_conn_stream.o ncbi_conn_test.o ncbi_misc.o ncbi_namedpipe.o ncbi_namedpipe_connector.o ncbi_pipe.o ncbi_pipe_connector.o ncbi_conn_reader_writer.o ncbi_userhost.o ncbi_http_session.o ncbi_lbos_cxx.o ncbi_monkey.o ncbi_service_cxx.o ncbi_localip_cxx.o ncbi_blowfish.o ncbi_usage_report.o connect_misc.o ncbi_gnutls.o ncbi_mbedtls.o ncbi_tls.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lxncbi -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnect.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libxconnect.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libxconnect.so
/bin/ln -f .xconnect.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.xconnect.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect'
cd objtools/blast/gene_info_reader/unit_test/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=gene_info_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objtools/blast/gene_info_reader/unit_test TMPL=gene_info_unit_test -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/objtools/blast/gene_info_reader/unit_test/gene_info_test.cpp:31:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/cgi/cgiapp_cached.hpp:35,
from /<<PKGBUILDDIR>>/c++/src/cgi/cgiapp_cached.cpp:34:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/serial/stltypes.cpp:35:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/impl/stltypesimpl.hpp:35,
from /<<PKGBUILDDIR>>/c++/src/serial/stltypes.cpp:34:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/cgi/cgi_run.cpp -o cgi_run.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/cgi/cgi_util.cpp -o cgi_util.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/cgi/cgi_serial.cpp -o cgi_serial.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/cgi/cgi_session.cpp -o cgi_session.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/cgi/cgi_exception.cpp -o cgi_exception.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/cgi/cgiapp_cached.cpp -o cgiapp_cached.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/cgi/cgi_entry_reader.cpp -o cgi_entry_reader.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-mIn file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/cgi/user_agent.cpp:34:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/serial/stltypes.cpp -o stltypes.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/serial/memberid.cpp -o memberid.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/serial/memberlist.cpp -o memberlist.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/serial/item.cpp -o item.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/serial/classinfob.cpp -o classinfob.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/serial/member.cpp -o member.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<BUILDDIR>>In file included from /<<PKGBUILDDIR>>/c++/src/objtools/blast/gene_info_reader/unit_test/gene_info_test.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
108 | auto_ptr<CMemoryFile> m_memGi2GeneFile;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiargs.hpp:84,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp_api.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:42:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
111 | auto_ptr<CMemoryFile> m_memGene2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
114 | auto_ptr<CMemoryFile> m_memGi2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
117 | auto_ptr<CMemoryFile> m_memGene2GiFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/blast/gene_info_reader/unit_test/gene_info_test.cpp: In member function ‘void gene_info::s_MainInfoReaderTest::test_method()’:
/<<PKGBUILDDIR>>/c++/src/objtools/blast/gene_info_reader/unit_test/gene_info_test.cpp:328:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
328 | auto_ptr<CGeneInfoFileReader> fileReader1(pReader1);
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/blast/gene_info_reader/unit_test/gene_info_test.cpp:329:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
329 | auto_ptr<CGeneInfoFileReader> fileReader2(pReader2);
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/blast/gene_info_reader/unit_test/gene_info_test.cpp: In member function ‘void gene_info::s_GiWithNoGeneIdTest::test_method()’:
/<<PKGBUILDDIR>>/c++/src/objtools/blast/gene_info_reader/unit_test/gene_info_test.cpp:376:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
376 | auto_ptr<CGeneInfoFileReader> fileReader1(pReader1);
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/blast/gene_info_reader/unit_test/gene_info_test.cpp:377:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
377 | auto_ptr<CGeneInfoFileReader> fileReader2(pReader2);
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In member function ‘void std::__cxx11::list<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ncbi::CTarEntryInfo; _Alloc = std::allocator<ncbi::CTarEntryInfo>]’,
inlined from ‘std::unique_ptr<std::__cxx11::list<ncbi::CTarEntryInfo> > ncbi::CTar::x_Append(const std::string&, const TEntries*)’ at /<<PKGBUILDDIR>>/c++/src/util/compress/api/tar.cpp:4248:31:
/usr/include/c++/12/bits/stl_list.h:1306:24: note: parameter passing for argument of type ‘std::_List_iterator<ncbi::CTarEntryInfo>’ changed in GCC 7.1
1306 | { this->_M_insert(end(), __x); }
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::__cxx11::list<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ncbi::CTarEntryInfo; _Alloc = std::allocator<ncbi::CTarEntryInfo>]’,
inlined from ‘std::unique_ptr<std::__cxx11::list<ncbi::CTarEntryInfo> > ncbi::CTar::x_Append(const std::string&, const TEntries*)’ at /<<PKGBUILDDIR>>/c++/src/util/compress/api/tar.cpp:4259:27:
/usr/include/c++/12/bits/stl_list.h:1306:24: note: parameter passing for argument of type ‘std::_List_iterator<ncbi::CTarEntryInfo>’ changed in GCC 7.1
1306 | { this->_M_insert(end(), __x); }
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::__cxx11::list<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ncbi::CTarEntryInfo; _Alloc = std::allocator<ncbi::CTarEntryInfo>]’,
inlined from ‘std::unique_ptr<std::__cxx11::list<ncbi::CTarEntryInfo> > ncbi::CTar::x_Append(const std::string&, const TEntries*)’ at /<<PKGBUILDDIR>>/c++/src/util/compress/api/tar.cpp:4277:31:
/usr/include/c++/12/bits/stl_list.h:1306:24: note: parameter passing for argument of type ‘std::_List_iterator<ncbi::CTarEntryInfo>’ changed in GCC 7.1
1306 | { this->_M_insert(end(), __x); }
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/serial/classinfob.cpp:38:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/serial/classinfob.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/serial/member.cpp:45:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/serial/member.cpp:35:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=gene_info_unit_test /<<PKGBUILDDIR>>/c++/src/objtools/blast/gene_info_reader/unit_test/gene_info_test.cpp -o gene_info_test.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie gene_info_test.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -ltest_boost -lgene_info -lxncbi -lm -lpthread -o gene_info_unit_test
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f gene_info_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f gene_info_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin/gene_info_unit_test
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test'
cd algo/blast/core/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blast UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/core'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
ap=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/cgi/user_agent.cpp -o user_agent.o
/bin/rm -f libxcgi.so .libxcgi.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libxcgi.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC ncbicgi.o cgiapp.o cgictx.o ncbicgir.o ncbires.o ref_args.o cgi_run.o cgi_util.o cgi_serial.o cgi_session.o cgi_exception.o cgiapp_cached.o cgi_entry_reader.o user_agent.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lxutil -lxncbi -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcgi.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libxcgi.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libxcgi.so
/bin/ln -f .xcgi.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.xcgi.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/cgi'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/core'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/cgi'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/core'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/core'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/core'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/blast/core TMPL=blast -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
cd connect/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xthrserv UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/serial/variant.cpp:47:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/serial/variant.cpp:35:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/connect TMPL=xthrserv -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/aa_ungapped.c: In function ‘s_BlastAaWordFinder_TwoHit’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/aa_ungapped.c:484:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic]
484 | scansub = (TAaScanSubjectFunction)(lookup->scansub_callback);
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/aa_ungapped.c:491:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic]
491 | scansub = (TAaScanSubjectFunction)(lookup->scansub_callback);
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/aa_ungapped.c: In function ‘s_BlastAaWordFinder_OneHit’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/aa_ungapped.c:751:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic]
751 | scansub = (TAaScanSubjectFunction)(lookup->scansub_callback);
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/aa_ungapped.c:758:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic]
758 | scansub = (TAaScanSubjectFunction)(lookup->scansub_callback);
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_engine.c: In function ‘BLAST_PreliminarySearchEngine’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_engine.c:1366:9: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic]
1366 | (T_MB_IdbCheckOid)lookup_wrap->check_index_oid;
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_engine.c:1504:22: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic]
1504 | ((T_MB_IdxEndSearchIndication)(
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_engine.c:1591:10: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic]
1591 | ((T_MB_IdxEndSearchIndication)(
| ^
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/core'
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/core/aa_ungapped.c -o aa_ungapped.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_diagnostics.c -o blast_diagnostics.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_engine.c -o blast_engine.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_extend.c -o blast_extend.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_filter.c -o blast_filter.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_gapalign.c -o blast_gapalign.o
/usr/bin/gcc -std=g/<<PKGBUILDDIR>>/c++/src/connect/server_monitor.cpp: In member function ‘void ncbi::CServer_Monitor::SetSocket(ncbi::CSocket&)’:
/<<PKGBUILDDIR>>/c++/src/connect/server_monitor.cpp:56:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
56 | auto_ptr<CSocket> s(new CSocket());
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbithr_conf.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimtx.hpp:62,
from /<<PKGBUILDDIR>>/c++/include/connect/server_monitor.hpp:35,
from /<<PKGBUILDDIR>>/c++/src/connect/server_monitor.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/ncbi-blast+-2.12.0+ds/c++/include /<<PKGBUILDDIR>>/c++/src/serial/classinfo.cpp -o classinfo.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/serial/variant.cpp -o variant.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/serial/choice.cpp -o choice.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/serial/choiceptr.cpp -o choiceptr.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/serial/aliasinfo.cpp -o aliasinfo.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/serial/objistr.cpp -o objistr.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/serial/objostr.cpp -o objostr.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_hits.c -o blast_hits.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_hspstream.c -o blast_hspstream.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_itree.c -o blast_itree.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_kappa.c -o blast_kappa.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_lookup.c -o blast_lookup.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_aalookup.c -o blast_aalookup.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -/<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_aascan.c: In function ‘BlastChooseProteinScanSubject’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_aascan.c:567:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic]
567 | lut->scansub_callback = (void *)s_BlastAaScanSubject;
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_aascan.c:570:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic]
570 | lut->scansub_callback = (void *)s_BlastSmallAaScanSubject;
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_aascan.c:575:33: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic]
575 | lut->scansub_callback = (void *)s_BlastCompressedAaScanSubject;
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_nalookup.c: In function ‘BlastNaHashLookupTableNew’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_nalookup.c:2236:27: warning: ISO C forbids assignment between function pointer and ‘void *’ [-Wpedantic]
2236 | lookup->hash_callback = FNV_hash;
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_nalookup.c:2296:49: warning: ISO C forbids passing argument 8 of ‘BlastHashLookupIndexQueryExactMatches’ between function pointer and ‘void *’ [-Wpedantic]
2296 | lookup->hash_callback,
| ~~~~~~^~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/core/blast_nalookup.h:36,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_nalookup.c:31:
/<<PKGBUILDDIR>>/c++/include/algo/blast/core/blast_lookup.h:181:66: note: expected ‘TNaLookupHashFunction’ {aka ‘unsigned int (*)(unsigned char *, unsigned int)’} but argument is of type ‘void *’
181 | TNaLookupHashFunction hash_func,
| ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/threaded_server.cpp:47:54: warning: ‘CThreadedServer’ is deprecated [-Wdeprecated-declarations]
47 | CSocketRequest(CThreadedServer& server, SOCK sock) // NCBI_FAKE_WARNING
| ^
In file included from /<<PKGBUILDDIR>>/c++/src/connect/threaded_server.cpp:33:
/<<PKGBUILDDIR>>/c++/include/connect/threaded_server.hpp:77:44: note: declared here
77 | NCBI_DEPRECATED_CLASS NCBI_XCONNECT_EXPORT CThreadedServer
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/threaded_server.cpp:52:22: warning: ‘CThreadedServer’ is deprecated [-Wdeprecated-declarations]
52 | CThreadedServer& m_Server; // NCBI_FAKE_WARNING
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/threaded_server.hpp:77:44: note: declared here
77 | NCBI_DEPRECATED_CLASS NCBI_XCONNECT_EXPORT CThreadedServer
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_nascan.c: In function ‘s_NaChooseScanSubject’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_nascan.c:291:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic]
291 | lookup->scansub_callback = (void *)s_BlastNaScanSubject_8_4;
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_nascan.c:293:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic]
293 | lookup->scansub_callback = (void *)s_BlastNaScanSubject_Any;
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_nascan.c: In function ‘s_SmallNaChooseScanSubject’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_nascan.c:1320:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic]
1320 | lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_4_1;
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_nascan.c:1322:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic]
1322 | lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_Any;
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_nascan.c:1327:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic]
1327 | lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_5_1;
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_nascan.c:1329:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic]
1329 | lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_Any;
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_nascan.c:1334:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic]
1334 | lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_6_1;
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_nascan.c:1336:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic]
1336 | lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_6_2;
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_nascan.c:1338:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic]
1338 | lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_Any;
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_nascan.c:1343:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic]
1343 | lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_7_1;
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_nascan.c:1345:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic]
1345 | lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_7_2;
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_nascan.c:1347:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic]
1347 | lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_7_3;
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_nascan.c:1349:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic]
1349 | lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_Any;
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_nascan.c:1354:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic]
1354 | lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_8_4;
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_nascan.c:1360:33: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic]
1360 | (void *)s_BlastSmallNaScanSubject_Any;
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_nascan.c:1364:33: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic]
1364 | (void *)s_BlastSmallNaScanSubject_8_1Mod4;
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_nascan.c:1368:33: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic]
1368 | (void *)s_BlastSmallNaScanSubject_8_2Mod4;
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_nascan.c:1372:33: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic]
1372 | (void *)s_BlastSmallNaScanSubject_8_3Mod4;
| ^
In file included from /<<PKGBUILDDIR>>/c++/src/connect/connection_pool.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/connect/server.cpp:35:
/<<PKGBUILDDIR>>/c++/include/connect/impl/server_connection.hpp:113:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
113 | auto_ptr<IServer_ConnectionHandler> m_Handler;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiargs.hpp:84,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp_api.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_param.hpp:41,
from /<<PKGBUILDDIR>>/c++/src/connect/server.cpp:34:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/impl/server_connection.hpp:145:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
145 | auto_ptr<IServer_ConnectionFactory> m_Factory;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/connect/connection_pool.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/connect/connection_pool.cpp:36:
/<<PKGBUILDDIR>>/c++/include/connect/impl/server_connection.hpp:113:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
113 | auto_ptr<IServer_ConnectionHandler> m_Handler;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbictype.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistre.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_stack.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/connect/error_codes.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/connect/connection_pool.cpp:35:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/impl/server_connection.hpp:145:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
145 | auto_ptr<IServer_ConnectionFactory> m_Factory;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_nascan.c: In function ‘s_MBChooseScanSubject’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_nascan.c:2620:24: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic]
2620 | (void *)s_MB_DiscWordScanSubject_TwoTemplates_1;
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_nascan.c:2622:39: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic]
2622 | mb_lt->scansub_callback = (void *)s_MB_DiscWordScanSubject_11_18_1;
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_nascan.c:2624:39: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic]
2624 | mb_lt->scansub_callback = (void *)s_MB_DiscWordScanSubject_11_21_1;
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_nascan.c:2626:39: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic]
2626 | mb_lt->scansub_callback = (void *)s_MB_DiscWordScanSubject_1;
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_nascan.c:2634:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic]
2634 | mb_lt->scansub_callback = (void *)s_MBScanSubject_9_1;
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_nascan.c:2636:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic]
2636 | mb_lt->scansub_callback = (void *)s_MBScanSubject_9_2;
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_nascan.c:2638:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic]
2638 | mb_lt->scansub_callback = (void *)s_MBScanSubject_Any;
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_nascan.c:2643:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic]
2643 | mb_lt->scansub_callback = (void *)s_MBScanSubject_10_1;
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_nascan.c:2645:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic]
2645 | mb_lt->scansub_callback = (void *)s_MBScanSubject_10_2;
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_nascan.c:2647:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic]
2647 | mb_lt->scansub_callback = (void *)s_MBScanSubject_10_3;
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_nascan.c:2649:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic]
2649 | mb_lt->scansub_callback = (void *)s_MBScanSubject_Any;
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_nascan.c:2655:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic]
2655 | mb_lt->scansub_callback = (void *)s_MBScanSubject_Any;
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_nascan.c:2658:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic]
2658 | mb_lt->scansub_callback = (void *)s_MBScanSubject_11_1Mod4;
| ^
/<<PKGBUILDDIR>>/c++/src/connect/server.cpp: In constructor ‘ncbi::CAcceptRequest::CAcceptRequest(ncbi::EServIO_Event, ncbi::CServer_ConnectionPool&, const STimeout*, ncbi::CServer_Listener*)’:
/<<PKGBUILDDIR>>/c++/src/connect/server.cpp:389:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
389 | auto_ptr<CServer_Connection> conn(
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_nascan.c:2661:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic]
2661 | mb_lt->scansub_callback = (void *)s_MBScanSubject_11_2Mod4;
| ^
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_nascan.c:2664:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic]
2664 | mb_lt->scansub_callback = (void *)s_MBScanSubject_11_3Mod4;
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_nascan.c:2676:39: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic]
2676 | mb_lt->scansub_callback = (void *)s_MBScanSubject_Any;
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_nascan.c: In function ‘s_BlastNaHashLookupRetieveHits’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_nascan.c:2705:9: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic]
2705 | (TNaLookupHashFunction)lookup->hash_callback;
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_nascan.c: In function ‘s_NaHashChooseScanSubject’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_nascan.c:2978:32: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic]
2978 | lookup->scansub_callback = (void*)s_BlastNaHashScanSubject_Any;
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_nascan.c: In function ‘BlastChooseNucleotideScanSubjectAny’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_nascan.c:2997:16: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic]
2997 | return (void *)s_BlastNaScanSubject_Any;
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_nascan.c:3000:16: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic]
3000 | return (void *)s_BlastSmallNaScanSubject_Any;
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_nascan.c:3003:16: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic]
3003 | return (void*)s_BlastNaHashScanSubject_Any;
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_nascan.c:3006:12: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic]
3006 | return (void *)s_MBScanSubject_Any;
| ^
mat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/compress/api/lzo.cpp -o lzo.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/compress/api/reader_zlib.cpp -o reader_zlib.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/compress/api/tar.cpp -o tar.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/compress/api/archive.cpp -o archive.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/compress/api/archive_.cpp -o archive_.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/util/compress/api/archive_zip.cpp -o archive_zip.o
/bin/rm -f libxcompress.so .libxcompress.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libxcompress.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC compress.o stream.o streambuf.o stream_util.o bzip2.o zlib.o lzo.o reader_zlib.o tar.o archive.o archive_.o archive_zip.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lxutil -lxncbi -lbz2 -lz -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcompress.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libxcompress.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libxcompress.so
/bin/ln -f .xcompress.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.xcompress.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/compress/api'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/compress/api'
specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_aascan.c -o blast_aascan.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_nalookup.c -o blast_nalookup.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_nascan.c -o blast_nascan.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_message.c -o blast_message.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_options.c -o blast_options.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_psi.c -o blast_psi.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LAR/<<PKGBUILDDIR>>/c++/src/algo/blast/core/na_ungapped.c: In function ‘s_IsSeedMasked’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/na_ungapped.c:488:15: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic]
488 | return !(((T_Lookup_Callback)(lookup_wrap->lookup_callback))
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/na_ungapped.c: In function ‘BlastNaWordFinder’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/na_ungapped.c:1622:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic]
1622 | scansub = (TNaScanSubjectFunction)lookup->scansub_callback;
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/na_ungapped.c:1623:18: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic]
1623 | extend = (TNaExtendFunction)lookup->extend_callback;
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/na_ungapped.c:1635:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic]
1635 | scansub = (TNaScanSubjectFunction)lookup->scansub_callback;
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/na_ungapped.c:1636:18: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic]
1636 | extend = (TNaExtendFunction)lookup->extend_callback;
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/na_ungapped.c:1643:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic]
1643 | scansub = (TNaScanSubjectFunction)lookup->scansub_callback;
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/na_ungapped.c:1644:18: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic]
1644 | extend = (TNaExtendFunction)lookup->extend_callback;
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/na_ungapped.c:1657:23: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic]
1657 | scansub = (TNaScanSubjectFunction)
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/na_ungapped.c: In function ‘MB_IndexedWordFinder’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/na_ungapped.c:1723:9: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic]
1723 | (T_MB_IdbCheckOid)lookup_wrap->check_index_oid;
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/na_ungapped.c:1725:25: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic]
1725 | (T_MB_IdbGetResults)lookup_wrap->read_indexed_db;
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/na_ungapped.c: In function ‘BlastChooseNaExtend’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/na_ungapped.c:1795:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic]
1795 | lookup_wrap->lookup_callback = (void *)s_MBLookup;
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/na_ungapped.c:1799:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic]
1799 | lut->extend_callback = (void *)s_BlastNaExtendDirect;
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/na_ungapped.c:1802:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic]
1802 | lut->extend_callback = (void *)s_BlastNaExtendAligned;
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/na_ungapped.c:1804:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic]
1804 | lut->extend_callback = (void *)s_BlastNaExtend;
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/na_ungapped.c:1808:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic]
1808 | lookup_wrap->lookup_callback = (void *)s_SmallNaLookup;
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/na_ungapped.c:1812:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic]
1812 | lut->extend_callback = (void *)s_BlastNaExtendDirect;
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/na_ungapped.c:1816:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic]
1816 | lut->extend_callback = (void *)s_BlastSmallNaExtendAlignedOneByte;
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/na_ungapped.c:1818:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic]
1818 | lut->extend_callback = (void *)s_BlastSmallNaExtend;
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/na_ungapped.c:1825:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic]
1825 | lookup_wrap->lookup_callback = (void *)s_NaLookup;
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/na_ungapped.c:1829:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic]
1829 | lut->extend_callback = (void *)s_BlastNaExtendDirect;
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/na_ungapped.c:1832:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic]
1832 | lut->extend_callback = (void *)s_BlastNaExtendAligned;
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/na_ungapped.c:1834:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic]
1834 | lut->extend_callback = (void *)s_BlastNaExtend;
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/na_ungapped.c: In function ‘JumperNaWordFinder’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/na_ungapped.c:1974:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic]
1974 | scansub = (TNaScanSubjectFunction)lookup->scansub_callback;
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/na_ungapped.c:1986:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic]
1986 | scansub = (TNaScanSubjectFunction)lookup->scansub_callback;
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/na_ungapped.c:1994:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic]
1994 | scansub = (TNaScanSubjectFunction)lookup->scansub_callback;
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/na_ungapped.c:2001:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic]
2001 | scansub = (TNaScanSubjectFunction)lookup->scansub_callback;
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/na_ungapped.c:2014:23: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic]
2014 | scansub = (TNaScanSubjectFunction)
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/na_ungapped.c: In function ‘ShortRead_IndexedWordFinder’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/na_ungapped.c:2188:9: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic]
2188 | (T_MB_IdbCheckOid)lookup_wrap->check_index_oid;
| ^
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/na_ungapped.c:2190:25: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic]
2190 | (T_MB_IdbGetResults)lookup_wrap->read_indexed_db;
| ^
GEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/core/na_ungapped.c -o na_ungapped.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_psi_priv.c -o blast_psi_priv.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_seg.c -o blast_seg.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_seqsrc.c -o blast_seqsrc.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_setup.c -o blast_setup.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_stat.c -o blast_stat.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-iztKf/<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_util.c: In function ‘BlastProgram2Number’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_util.c:306:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
306 | else if (strcasecmp("mapper", program) == 0)
| ^~
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_util.c:309:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
309 | return 0;
| ^~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/serial/objistr.cpp:62:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/serial/objistr.cpp:35:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/serial/objostr.cpp:62:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/serial/objostr.cpp:35:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/serial/objcopy.cpp:48:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/serial/objcopy.cpp:35:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
v/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_traceback.c -o blast_traceback.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_util.c -o blast_util.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/core/gapinfo.c -o gapinfo.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/core/greedy_align.c -o greedy_align.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/core/hspfilter_collector.c -o hspfilter_collector.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/core/hspfilter_besthit.c -o hspfilter_besthit.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<BUILDDIR>>/<<PKGBUILDDIR>>/c++/src/algo/blast/core/link_hsps.c: In function ‘s_FwdCompareHSPs’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/link_hsps.c:133:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
133 | if (h1->context > h2->context)
| ^~
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/link_hsps.c:136:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
136 | if (h1->query.offset < h2->query.offset)
| ^~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/threaded_server.cpp -o threaded_server.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/server.cpp -o server.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/server_monitor.cpp -o server_monitor.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/connection_pool.cpp -o connection_pool.o
/bin/rm -f libxthrserv.so .libxthrserv.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libxthrserv.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC threaded_server.o server.o server_monitor.o connection_pool.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lxutil -lxconnect -lmbedtls -lmbedx509 -lmbedcrypto -lz
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxthrserv.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libxthrserv.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libxthrserv.so
/bin/ln -f .xthrserv.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.xthrserv.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect'
cd connect/services/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xconnserv UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect/services'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect/services'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect/services'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect/services'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect/services'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/connect/services TMPL=xconnserv -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/hspfilter_culling.c -o hspfilter_culling.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/core/link_hsps.c -o link_hsps.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/core/lookup_util.c -o lookup_util.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/core/lookup_wrap.c -o lookup_wrap.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/core/matrix_freq_ratios.c -o matrix_freq_ratios.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/core/ncbi_std.c -o ncbi_std.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/core/ncbi_math.c -o ncbi_math.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/connect/services/grid_worker_app.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/connect/services/wn_cleanup.hpp:35,
from /<<PKGBUILDDIR>>/c++/src/connect/services/grid_worker_impl.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/connect/services/grid_worker.cpp:34:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/services/grid_worker_app.hpp:89:75: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
89 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/services/grid_worker_app.hpp:89:51: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
89 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/services/grid_worker_app.hpp:93:75: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
93 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/services/grid_worker_app.hpp:93:51: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
93 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/connect/services/grid_worker_app.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/connect/services/wn_cleanup.hpp:35,
from /<<PKGBUILDDIR>>/c++/src/connect/services/grid_worker_impl.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/connect/services/grid_worker_app.cpp:34:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/services/grid_worker_app.hpp:89:75: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
89 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/services/grid_worker_app.hpp:89:51: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
89 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/services/grid_worker_app.hpp:93:75: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
93 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/services/grid_worker_app.hpp:93:51: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
93 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_encoding.c -o blast_encoding.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/core/pattern.c -o pattern.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/core/phi_extend.c -o phi_extend.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/core/phi_gapalign.c -o phi_gapalign.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/core/phi_lookup.c -o phi_lookup.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_parameters.c -o blast_parameters.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-/<<PKGBUILDDIR>>/c++/src/algo/blast/core/phi_lookup.c: In function ‘SPHIPatternSearchBlkNew’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/phi_lookup.c:634:30: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=]
634 | localPattern[posIndex-1] = 1;
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/phi_lookup.c:411:11: note: at offset [-330, -1] into destination object ‘localPattern’ of size 330
411 | Uint1 localPattern[PHI_MAX_PATTERN_LENGTH]; /*local variable to hold for each position whether
| ^~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/phi_lookup.c:634:30: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=]
634 | localPattern[posIndex-1] = 1;
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/core/phi_lookup.c:411:11: note: at offset -1 into destination object ‘localPattern’ of size 330
411 | Uint1 localPattern[PHI_MAX_PATTERN_LENGTH]; /*local variable to hold for each position whether
| ^~~~~~~~~~~~
protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_posit.c -o blast_posit.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_program.c -o blast_program.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_query_info.c -o blast_query_info.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_tune.c -o blast_tune.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_sw.c -o blast_sw.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_dynarray.c -o blast_dynarray.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/core/split_query.c -o split_query.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/core/gencode_singleton.c -o gencode_singleton.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/core/index_ungapped.c -o index_ungapped.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_traceback_mt_priv.c -o blast_traceback_mt_priv.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/core/blast_hspstream_mt_utils.c -o blast_hspstream_mt_utils.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/core/boost_erf.c -o boost_erf.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blaIn file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/serial/serial.cpp:37:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/serial/serial.cpp:34:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
st+-iztKfv/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/core/jumper.c -o jumper.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/core/hspfilter_mapper.c -o hspfilter_mapper.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/core/spliced_hits.c -o spliced_hits.o
/bin/rm -f libblast.so .libblast.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libblast.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC aa_ungapped.o blast_diagnostics.o blast_engine.o blast_extend.o blast_filter.o blast_gapalign.o blast_hits.o blast_hspstream.o blast_itree.o blast_kappa.o blast_lookup.o blast_aalookup.o blast_aascan.o blast_nalookup.o blast_nascan.o blast_message.o blast_options.o blast_psi.o na_ungapped.o blast_psi_priv.o blast_seg.o blast_seqsrc.o blast_setup.o blast_stat.o blast_traceback.o blast_util.o gapinfo.o greedy_align.o hspfilter_collector.o hspfilter_besthit.o hspfilter_culling.o link_hsps.o lookup_util.o lookup_wrap.o matrix_freq_ratios.o ncbi_std.o ncbi_math.o blast_encoding.o pattern.o phi_extend.o phi_gapalign.o phi_lookup.o blast_parameters.o blast_posit.o blast_program.o blast_query_info.o blast_tune.o blast_sw.o blast_dynarray.o split_query.o gencode_singleton.o index_ungapped.o blast_traceback_mt_priv.o blast_hspstream_mt_utils.o boost_erf.o jumper.o hspfilter_mapper.o spliced_hits.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lcomposition_adjustment -lxconnect -ltables -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libblast.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libblast.so
/bin/ln -f .blast.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.blast.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/core'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/core'
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/connect/services/grid_client_app.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/connect/services/grid_client_app.cpp:35:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect/services'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/services/grid_worker.cpp -o grid_worker.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/services/ns_client_factory.cpp -o ns_client_factory.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/services/grid_worker_app.cpp -o grid_worker_app.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/services/grid_client.cpp -o grid_client.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/services/grid_client_app.cpp -o grid_client_app.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/services/wn_commit_thread.cpp -o wn_commit_thread.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/shaIn file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/connect/services/grid_worker_app.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/connect/services/wn_cleanup.hpp:35,
from /<<PKGBUILDDIR>>/c++/src/connect/services/grid_worker_impl.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/connect/services/wn_commit_thread.cpp:35:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/services/grid_worker_app.hpp:89:75: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
89 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/services/grid_worker_app.hpp:89:51: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
89 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/services/grid_worker_app.hpp:93:75: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
93 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/services/grid_worker_app.hpp:93:51: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
93 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/connect/services/grid_worker_app.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/connect/services/wn_cleanup.hpp:35,
from /<<PKGBUILDDIR>>/c++/src/connect/services/wn_main_loop.cpp:35:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/services/grid_worker_app.hpp:89:75: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
89 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/services/grid_worker_app.hpp:89:51: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
89 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/services/grid_worker_app.hpp:93:75: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
93 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/services/grid_worker_app.hpp:93:51: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
93 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
E -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/serial/objcopy.cpp -o objcopy.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/serial/iterator.cpp -o iterator.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/serial/serial.cpp -o serial.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/serial/delaybuf.cpp -o delaybuf.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/serial/pack_string.cpp -o pack_string.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/serial/exception.cpp -o exception.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/serial/objhook.cpp -o objhook.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/connect/services/grid_worker_app.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/connect/services/wn_cleanup.hpp:35,
from /<<PKGBUILDDIR>>/c++/src/connect/services/wn_cleanup.cpp:34:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/services/grid_worker_app.hpp:89:75: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
89 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/services/grid_worker_app.hpp:89:51: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
89 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/services/grid_worker_app.hpp:93:75: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
93 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/services/grid_worker_app.hpp:93:51: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
93 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/connect/services/grid_worker_app.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/connect/services/wn_cleanup.hpp:35,
from /<<PKGBUILDDIR>>/c++/src/connect/services/wn_offline_mode.cpp:35:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/services/grid_worker_app.hpp:89:75: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
89 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/services/grid_worker_app.hpp:89:51: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
89 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/services/grid_worker_app.hpp:93:75: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
93 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/services/grid_worker_app.hpp:93:51: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
93 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/connect/services/grid_worker_app.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/connect/services/wn_cleanup.hpp:35,
from /<<PKGBUILDDIR>>/c++/src/connect/services/grid_worker_impl.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/connect/services/grid_control_thread.cpp:35:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/services/grid_worker_app.hpp:89:75: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
89 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/services/grid_worker_app.hpp:89:51: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
89 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/services/grid_worker_app.hpp:93:75: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
93 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/services/grid_worker_app.hpp:93:51: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
93 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
-O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/serial/objlist.cpp -o objlist.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/serial/objstack.cpp -o objstack.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/serial/objostrasn.cpp -o objostrasn.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/serial/objistrasn.cpp -o objistrasn.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/serial/objostrasnb.cpp -o objostrasnb.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/serial/objistrasnb.cpp -o objistrasnb.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -re/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/services/wn_main_loop.cpp -o wn_main_loop.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/services/wn_cleanup.cpp -o wn_cleanup.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/services/wn_offline_mode.cpp -o wn_offline_mode.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/services/grid_control_thread.cpp -o grid_control_thread.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/services/grid_globals.cpp -o grid_globals.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/services/grid_rw_impl.cpp -o grid_rw_impl.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<BUILDDIR>>/ncbi-blast+-2.12.0In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/serial/objistrasnb.cpp:34:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator<long long int>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<long long int>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘void ncbi::CObjectIStreamAsnBinary::ExpectIndefiniteLength()’ at /<<PKGBUILDDIR>>/c++/include/serial/impl/objistrasnb.inl:292:27:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘void ncbi::CObjectIStreamAsnBinary::ExpectIndefiniteLength()’ at /<<PKGBUILDDIR>>/c++/include/serial/impl/objistrasnb.inl:292:27,
inlined from ‘virtual std::string ncbi::CObjectIStreamAsnBinary::ReadOtherPointer()’ at /<<PKGBUILDDIR>>/c++/src/serial/objistrasnb.cpp:1841:27:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
+ds/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/services/remote_app.cpp -o remote_app.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/services/srv_connections.cpp -o srv_connections.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/services/netservice_api.cpp -o netservice_api.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/services/netservice_params.cpp -o netservice_params.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/services/netschedule_api.cpp -o netschedule_api.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/services/netschedule_api_submitter.cpp -o netschedule_api_submitter.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/services/netschedule_api_executor.cpp -o netschedule_api_executor.o
/usr/bin/g++ -std=gnu++14 -c -Wall I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/serial/objostrxml.cpp -o objostrxml.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/serial/objistrxml.cpp -o objistrxml.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/serial/objostrjson.cpp -o objostrjson.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/serial/objistrjson.cpp -o objistrjson.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/serial/serializable.cpp -o serializable.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/serial/serialobject.cpp -o serialobject.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/serial/pathhook.cpp -o pathhook.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -WIn file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/connect/services/grid_worker_app.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/connect/services/wn_cleanup.hpp:35,
from /<<PKGBUILDDIR>>/c++/src/connect/services/grid_worker_impl.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/connect/services/netschedule_api_getjob.cpp:35:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/services/grid_worker_app.hpp:89:75: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
89 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/services/grid_worker_app.hpp:89:51: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
89 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/services/grid_worker_app.hpp:93:75: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
93 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/connect/services/grid_worker_app.hpp:93:51: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
93 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
format -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/serial/rpcbase.cpp -o rpcbase.o
/bin/rm -f libxser.so .libxser.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libxser.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC hookdata.o hookdatakey.o typeinfo.o objectinfo.o objectiter.o objectio.o typeref.o typemap.o stdtypes.o enumerated.o ptrinfo.o autoptrinfo.o continfo.o stltypes.o memberid.o memberlist.o item.o classinfob.o member.o classinfo.o variant.o choice.o choiceptr.o aliasinfo.o objistr.o objostr.o objcopy.o iterator.o serial.o delaybuf.o pack_string.o exception.o objhook.o objlist.o objstack.o objostrasn.o objistrasn.o objostrasnb.o objistrasnb.o objostrxml.o objistrxml.o objostrjson.o objistrjson.o serializable.o serialobject.o pathhook.o rpcbase.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lxutil -lxncbi -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxser.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libxser.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libxser.so
/bin/ln -f .xser.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.xser.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/serial'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/serial'
cd serial/datatool/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=datatool LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/serial/datatool'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/serial/datatool'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/serial/datatool'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/serial/datatool'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/serial/datatool'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/serial/datatool TMPL=datatool -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/serial/datatool/datatool.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/serial/datatool/type.cpp:49:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/serial/datatool/datatool.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/serial/datatool/datatool.cpp:59:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
-Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/services/netschedule_api_reader.cpp -o netschedule_api_reader.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/services/netschedule_api_admin.cpp -o netschedule_api_admin.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/services/netschedule_api_getjob.cpp -o netschedule_api_getjob.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/services/netschedule_key.cpp -o netschedule_key.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/services/netschedule_api_expt.cpp -o netschedule_api_expt.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/services/netcache_key.cpp -o netcache_key.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC In file included from /<<PKGBUILDDIR>>/c++/src/serial/datatool/statictype.cpp:41:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/serial/datatool/exceptions.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/serial/datatool/statictype.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/serial/datatool'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=datatool /<<PKGBUILDDIR>>/c++/src/serial/datatool/datatool.cpp -o datatool.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=datatool /<<PKGBUILDDIR>>/c++/src/serial/datatool/type.cpp -o type.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=datatool /<<PKGBUILDDIR>>/c++/src/serial/datatool/namespace.cpp -o namespace.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=datatool /<<PKGBUILDDIR>>/c++/src/serial/datatool/statictype.cpp -o statictype.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=datatool /<<PKGBUILDDIR>>/c++/src/serial/datatool/enumtype.cpp -o enumtype.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=datatool /<<PKGBUILDDIR>>/c++/src/serial/datatool/reftype.cpp -o reftype.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/services/netcache_rw.cpp -o netcache_rw.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/services/netcache_params.cpp -o netcache_params.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/services/netcache_api.cpp -o netcache_api.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/services/netcache_api_admin.cpp -o netcache_api_admin.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/services/netcache_search.cpp -o netcache_search.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/services/netservice_protocol_parser.cpp -o netservice_protocol_parser.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<BUILDDIR>>/ncbi-blast+-2In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/serial/datatool/reftype.cpp:43:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/serial/datatool/type.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/serial/datatool/reftype.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/serial/datatool/reftype.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/serial/datatool/unitype.cpp:33:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:35:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=datatool /<<PKGBUILDDIR>>/c++/src/serial/datatool/unitype.cpp -o unitype.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=datatool /<<PKGBUILDDIR>>/c++/src/serial/datatool/blocktype.cpp -o blocktype.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=datatool /<<PKGBUILDDIR>>/c++/src/serial/datatool/choicetype.cpp -o choicetype.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=datatool /<<PKGBUILDDIR>>/c++/src/serial/datatool/typestr.cpp -o typestr.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=datatool /<<PKGBUILDDIR>>/c++/src/serial/datatool/ptrstr.cpp -o ptrstr.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=datatool /<<PKGBUILDDIR>>/c++/src/serial/datatool/stdstr.cpp -o stdstr.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LIn file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/serial/datatool/datatool.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/serial/datatool/classstr.cpp:33:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/serial/datatool/datatool.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/serial/datatool/choicestr.cpp:35:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/serial/datatool/datatool.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/serial/datatool/choiceptrstr.cpp:36:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/connect/services/netstorage_rpc.cpp: In constructor ‘ncbi::CSendJsonOverSocket::CSendJsonOverSocket(ncbi::CSocket&)’:
/<<PKGBUILDDIR>>/c++/src/connect/services/netstorage_rpc.cpp:115:55: warning: member ‘ncbi::CSendJsonOverSocket::m_UTTPWriter’ is used uninitialized [-Wuninitialized]
115 | CSendJsonOverSocket(CSocket& sock) : m_JSONWriter(m_UTTPWriter), m_Socket(sock) {}
| ^~~~~~~~~~~~
.12.0+ds/c++/include /<<PKGBUILDDIR>>/c++/src/connect/services/util.cpp -o util.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/services/clparser.cpp -o clparser.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/services/json_over_uttp.cpp -o json_over_uttp.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/services/netstorage.cpp -o netstorage.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/services/netstorage_rpc.cpp -o netstorage_rpc.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/services/netstorageobjectloc.cpp -o netstorageobjectloc.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/services/netstorageobjectinfo.cpp -o netstorageobjectinfo.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usrARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=datatool /<<PKGBUILDDIR>>/c++/src/serial/datatool/classstr.cpp -o classstr.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=datatool /<<PKGBUILDDIR>>/c++/src/serial/datatool/enumstr.cpp -o enumstr.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=datatool /<<PKGBUILDDIR>>/c++/src/serial/datatool/stlstr.cpp -o stlstr.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=datatool /<<PKGBUILDDIR>>/c++/src/serial/datatool/choicestr.cpp -o choicestr.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=datatool /<<PKGBUILDDIR>>/c++/src/serial/datatool/choiceptrstr.cpp -o choiceptrstr.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=datatool /<<PKGBUILDDIR>>/c++/src/serial/datatool/value.cpp -o value.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILIn file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/serial/datatool/moduleset.cpp:34:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
D/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=datatool /<<PKGBUILDDIR>>/c++/src/serial/datatool/mcontainer.cpp -o mcontainer.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=datatool /<<PKGBUILDDIR>>/c++/src/serial/datatool/module.cpp -o module.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=datatool /<<PKGBUILDDIR>>/c++/src/serial/datatool/moduleset.cpp -o moduleset.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=datatool /<<PKGBUILDDIR>>/c++/src/serial/datatool/generate.cpp -o generate.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=datatool /<<PKGBUILDDIR>>/c++/src/serial/datatool/filecode.cpp -o filecode.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=datatool /<<PKGBUILDDIR>>/c++/src/serial/datatool/code.cpp -o code.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=datatool /<<PKGBUILDDIR>>/c++/src/serial/datatool/fileutil.cpp -o file/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/services/netstorage_direct_nc.cpp -o netstorage_direct_nc.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/services/ns_output_parser.cpp -o ns_output_parser.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/services/ns_job_serializer.cpp -o ns_job_serializer.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/services/compound_id.cpp -o compound_id.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/services/compound_id_v0.cpp -o compound_id_v0.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/connect/services/netschedule_api_wn_info.cpp -o netschedule_api_wn_info.o
/bin/rm -f libxconnserv.so .libxconnserv.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libxconnserv.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC grid_worker.o ns_client_factory.o grid_worker_app.o grid_client.o grid_client_app.o wn_commit_thread.o wn_main_loop.o wn_cleanup.o wn_offline_mode.o grid_control_thread.o grid_globals.o grid_rw_impl.o remote_app.o srv_connections.o netservice_api.o netservice_params.o netschedule_api.o netschedule_api_submitter.o netschedule_api_executor.o netschedule_api_reader.o netschedule_api_admin.o netschedule_api_getjob.o netschedule_key.o netschedule_api_expt.o netcache_key.o netcache_rw.o netcache_params.o netcache_api.o netcache_api_admin.o netcache_search.o netservice_protocol_parser.o util.o clparser.o json_over_uttp.o netstorage.o netstorage_rpc.o netstorageobjectloc.o netstorageobjectinfo.o netstorage_direct_nc.o ns_output_parser.o ns_job_serializer.o compound_id.o compound_id_v0.o netschedule_api_wn_info.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lxthrserv -lxconnect -lxutil -lxncbi -lmbedtls -lmbedx509 -lmbedcrypto -lz
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnserv.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libxconnserv.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libxconnserv.so
/bin/ln -f .xconnserv.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.xconnserv.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect/services'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect/services'
util.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=datatool /<<PKGBUILDDIR>>/c++/src/serial/datatool/alexer.cpp -o alexer.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=datatool /<<PKGBUILDDIR>>/c++/src/serial/datatool/aparser.cpp -o aparser.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=datatool /<<PKGBUILDDIR>>/c++/src/serial/datatool/parser.cpp -o parser.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=datatool /<<PKGBUILDDIR>>/c++/src/serial/datatool/lexer.cpp -o lexer.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=datatool /<<PKGBUILDDIR>>/c++/src/serial/datatool/exceptions.cpp -o exceptions.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=datatool /<<PKGBUILDDIR>>/c++/src/serial/datatool/comments.cpp -o comments.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specIn file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/serial/datatool/datatool.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/serial/datatool/aliasstr.cpp:34:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
s -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=datatool /<<PKGBUILDDIR>>/c++/src/serial/datatool/srcutil.cpp -o srcutil.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=datatool /<<PKGBUILDDIR>>/c++/src/serial/datatool/dtdaux.cpp -o dtdaux.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=datatool /<<PKGBUILDDIR>>/c++/src/serial/datatool/dtdlexer.cpp -o dtdlexer.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=datatool /<<PKGBUILDDIR>>/c++/src/serial/datatool/dtdparser.cpp -o dtdparser.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=datatool /<<PKGBUILDDIR>>/c++/src/serial/datatool/rpcgen.cpp -o rpcgen.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=datatool /<<PKGBUILDDIR>>/c++/src/serial/datatool/aliasstr.cpp -o aliasstr.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANTIn file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/serial/datatool/datatool.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/serial/datatool/xsdparser.cpp:39:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/serial/datatool/datatool.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/serial/datatool/wsdlparser.cpp:39:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
-D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=datatool /<<PKGBUILDDIR>>/c++/src/serial/datatool/xsdlexer.cpp -o xsdlexer.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=datatool /<<PKGBUILDDIR>>/c++/src/serial/datatool/xsdparser.cpp -o xsdparser.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=datatool /<<PKGBUILDDIR>>/c++/src/serial/datatool/wsdllexer.cpp -o wsdllexer.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=datatool /<<PKGBUILDDIR>>/c++/src/serial/datatool/wsdlparser.cpp -o wsdlparser.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=datatool /<<PKGBUILDDIR>>/c++/src/serial/datatool/wsdlstr.cpp -o wsdlstr.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=datatool /<<PKGBUILDDIR>>/c++/src/serial/datatool/jsdlexer.cpp -o jsdlexer.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=datatool /<<PKGBUILDDIR>>/c++/src/serial/datatool/jsdparser.cpp -o jsdparser.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=datatool /<<PKGBUILDDIR>>/c++/src/serial/datatool/traversal_pattern_match_callback.cpp -o traversal_pattern_match_callback.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=datatool /<<PKGBUILDDIR>>/c++/src/serial/datatool/traversal_code_generator.cpp -o traversal_code_generator.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=datatool /<<PKGBUILDDIR>>/c++/src/serial/datatool/traversal_merger.cpp -o traversal_merger.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=datatool /<<PKGBUILDDIR>>/c++/src/serial/datatool/traversal_node.cpp -o traversal_node.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=datatool /<<PKGBUILDDIR>>/c++/src/serial/datatool/traversal_spec_file_parser.cpp -o traversal_spec_file_parser.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie datatool.o type.o namespace.o statictype.o enumtype.o reftype.o unitype.o blocktype.o choicetype.o typestr.o ptrstr.o stdstr.o classstr.o enumstr.o stlstr.o choicestr.o choiceptrstr.o value.o mcontainer.o module.o moduleset.o generate.o filecode.o code.o fileutil.o alexer.o aparser.o parser.o lexer.o exceptions.o comments.o srcutil.o dtdaux.o dtdlexer.o dtdparser.o rpcgen.o aliasstr.o xsdlexer.o xsdparser.o wsdllexer.o wsdlparser.o wsdlstr.o jsdlexer.o jsdparser.o traversal_pattern_match_callback.o traversal_code_generator.o traversal_merger.o traversal_node.o traversal_spec_file_parser.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lxser -lxutil -lxncbi -lm -lpthread -o datatool
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f datatool /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f datatool /<<PKGBUILDDIR>>/c++/BUILD/bin/datatool
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/serial/datatool'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/serial/datatool'
cd objects/general/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
cd objects/biblio/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
cd objects/medline/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
cd objects/pub/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/biblio'
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/general'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/medline'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/pub'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
cd /<<PKGBUILDDIR>>/c++/src/objects/biblio && /<<PKGBUILDDIR>>/c++/BUILD/build/new_module.sh biblio all
cd /<<PKGBUILDDIR>>/c++/src/objects/medline && /<<PKGBUILDDIR>>/c++/BUILD/build/new_module.sh medline all
cd /<<PKGBUILDDIR>>/c++/src/objects/general && /<<PKGBUILDDIR>>/c++/BUILD/build/new_module.sh general all
cd /<<PKGBUILDDIR>>/c++/src/objects/pub && /<<PKGBUILDDIR>>/c++/BUILD/build/new_module.sh pub all
Platform not defined for Linux armv7l -- please fix me
Platform not defined for Linux armv7l -- please fix me
Platform not defined for Linux armv7l -- please fix me
Platform not defined for Linux armv7l -- please fix me
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /<<PKGBUILDDIR>>/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/<<PKGBUILDDIR>>/c++/src/objects/general/general.asn /<<PKGBUILDDIR>>/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/<<PKGBUILDDIR>>/c++ builddir=/<<PKGBUILDDIR>>/c++/BUILD/build DATATOOL=/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/<<PKGBUILDDIR>>/c++/src all
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objects/medline'
/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool -oR /<<PKGBUILDDIR>>/c++ \
-opm /<<PKGBUILDDIR>>/c++/src -m medline.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA \
-oc medline -or objects/medline -odi -od medline.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd medline.dump \
datatool: 2.20.1
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objects/medline'
/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /<<PKGBUILDDIR>>/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/<<PKGBUILDDIR>>/c++/src/objects/general/general.asn /<<PKGBUILDDIR>>/c++/src/objects/biblio/biblio.asn /<<PKGBUILDDIR>>/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/<<PKGBUILDDIR>>/c++ builddir=/<<PKGBUILDDIR>>/c++/BUILD/build DATATOOL=/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/<<PKGBUILDDIR>>/c++/src all
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objects/pub'
/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool -oR /<<PKGBUILDDIR>>/c++ \
-opm /<<PKGBUILDDIR>>/c++/src -m pub.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA \
-oc pub -or objects/pub -odi -od pub.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd pub.dump \
datatool: 2.20.1
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objects/pub'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objects/medline'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objects/pub'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objects/medline'
/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /<<PKGBUILDDIR>>/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/<<PKGBUILDDIR>>/c++ builddir=/<<PKGBUILDDIR>>/c++/BUILD/build DATATOOL=/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/<<PKGBUILDDIR>>/c++/src all
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objects/general'
/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool -oR /<<PKGBUILDDIR>>/c++ \
-opm /<<PKGBUILDDIR>>/c++/src -m general.asn -M "" -oA \
-oc general -or objects/general -odi -od general.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd general.dump \
datatool: 2.20.1
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objects/general'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objects/pub'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objects/general'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/medline'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/pub'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/medline'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/pub'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/medline'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objects/general'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/pub'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/medline'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/pub'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/general'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/general'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/general'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make[4] (Makefile.medline.lib): Nothing to be done for `export-headers'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/general'
/usr/bin/make[4] (Makefile.pub.lib): Nothing to be done for `export-headers'.
/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /<<PKGBUILDDIR>>/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/<<PKGBUILDDIR>>/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/<<PKGBUILDDIR>>/c++ builddir=/<<PKGBUILDDIR>>/c++/BUILD/build DATATOOL=/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/<<PKGBUILDDIR>>/c++/src all
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objects/biblio'
/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool -oR /<<PKGBUILDDIR>>/c++ \
-opm /<<PKGBUILDDIR>>/c++/src -m biblio.asn -M "objects/general/general.asn" -oA \
-oc biblio -or objects/biblio -odi -od biblio.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd biblio.dump \
datatool: 2.20.1
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objects/biblio'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objects/biblio'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make[4] (Makefile.general.lib): Nothing to be done for `export-headers'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objects/biblio'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/biblio'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/biblio'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/biblio'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/biblio'
/usr/bin/make[4] (Makefile.biblio.lib): Nothing to be done for `export-headers'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/biblio'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/general'
cd objects/seqcode/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/medline'
cd objects/seq/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/pub'
cd objects/seqset/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
cd objects/scoremat/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seqcode'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seq'
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/scoremat'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seqset'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
cd /<<PKGBUILDDIR>>/c++/src/objects/scoremat && /<<PKGBUILDDIR>>/c++/BUILD/build/new_module.sh scoremat all
cd /<<PKGBUILDDIR>>/c++/src/objects/seqset && /<<PKGBUILDDIR>>/c++/BUILD/build/new_module.sh seqset all
cd /<<PKGBUILDDIR>>/c++/src/objects/seqcode && /<<PKGBUILDDIR>>/c++/BUILD/build/new_module.sh seqcode all
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seq'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seq'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seq'
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seq'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seq'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/src/objects/seq/Makefile.sources builddir=/<<PKGBUILDDIR>>/c++/BUILD/build srcdir=/<<PKGBUILDDIR>>/c++/src/objects/seq -w -j4 --jobserver-auth=9,10 all
Platform not defined for Linux armv7l -- please fix me
Platform not defined for Linux armv7l -- please fix me
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
Platform not defined for Linux armv7l -- please fix me
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /<<PKGBUILDDIR>>/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/<<PKGBUILDDIR>>/c++ builddir=/<<PKGBUILDDIR>>/c++/BUILD/build DATATOOL=/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/<<PKGBUILDDIR>>/c++/src all
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objects/seqcode'
/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool -oR /<<PKGBUILDDIR>>/c++ \
-opm /<<PKGBUILDDIR>>/c++/src -m seqcode.asn -M "" -oA \
-oc seqcode -or objects/seqcode -odi -od seqcode.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd seqcode.dump \
datatool: 2.20.1
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objects/seqcode'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objects/seqcode'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objects/seqcode'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seqcode'
Platform not defined for Linux armv7l -- please fix me
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seqcode'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seqcode'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seqcode'
/usr/bin/make[4] (Makefile.seqcode.lib): Nothing to be done for `export-headers'.
/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /<<PKGBUILDDIR>>/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/<<PKGBUILDDIR>>/c++/src/objects/general/general.asn /<<PKGBUILDDIR>>/c++/src/objects/biblio/biblio.asn /<<PKGBUILDDIR>>/c++/src/objects/medline/medline.asn /<<PKGBUILDDIR>>/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/<<PKGBUILDDIR>>/c++ builddir=/<<PKGBUILDDIR>>/c++/BUILD/build DATATOOL=/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/<<PKGBUILDDIR>>/c++/src all
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objects/seqset'
/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool -oR /<<PKGBUILDDIR>>/c++ \
-opm /<<PKGBUILDDIR>>/c++/src -m seqset.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn" -oA \
-oc seqset -or objects/seqset -odi -od seqset.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd seqset.dump \
datatool: 2.20.1
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objects/seqset'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objects/seqset'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /<<PKGBUILDDIR>>/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/<<PKGBUILDDIR>>/c++/src/objects/seqset/seqset.asn /<<PKGBUILDDIR>>/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/<<PKGBUILDDIR>>/c++ builddir=/<<PKGBUILDDIR>>/c++/BUILD/build DATATOOL=/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/<<PKGBUILDDIR>>/c++/src all
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objects/scoremat'
/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool -oR /<<PKGBUILDDIR>>/c++ \
-opm /<<PKGBUILDDIR>>/c++/src -m scoremat.asn -M "objects/seqset/seqset.asn objects/general/general.asn" -oA \
-oc scoremat -or objects/scoremat -odi -od scoremat.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd scoremat.dump \
datatool: 2.20.1
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objects/scoremat'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objects/scoremat'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objects/seqset'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seqset'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objects/scoremat'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seqset'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/scoremat'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seqset'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/scoremat'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seqset'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/scoremat'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/scoremat'
/usr/bin/make[4] (Makefile.seqset.lib): Nothing to be done for `export-headers'.
/usr/bin/make[4] (Makefile.scoremat.lib): Nothing to be done for `export-headers'.
Platform not defined for Linux armv7l -- please fix me
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seq'
status=0 ; \
MAKE="/usr/bin/make -w -j4 --jobserver-auth=12,14"; \
export MAKE; \
for x in seqalign seqblock seqfeat seqloc seqres seqtable; do \
d=/<<PKGBUILDDIR>>/c++/src/objects/seq/../$x ; \
(cd $d && /<<PKGBUILDDIR>>/c++/BUILD/build/new_module.sh) || status=9 ; \
test -f ${x}__.cpp || \
echo "#include \"../$x/${x}__.cpp\"" > ${x}__.cpp ; \
test -f ${x}___.cpp || \
echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \
done ; \
exit $status
/usr/bin/make -w -j4 --jobserver-auth=12,14 -f /<<PKGBUILDDIR>>/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/<<PKGBUILDDIR>>/c++/src/objects/general/general.asn /<<PKGBUILDDIR>>/c++/src/objects/biblio/biblio.asn /<<PKGBUILDDIR>>/c++/src/objects/medline/medline.asn /<<PKGBUILDDIR>>/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/<<PKGBUILDDIR>>/c++ builddir=/<<PKGBUILDDIR>>/c++/BUILD/build DATATOOL=/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/<<PKGBUILDDIR>>/c++/src
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objects/seqalign'
/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool -oR /<<PKGBUILDDIR>>/c++ \
-opm /<<PKGBUILDDIR>>/c++/src -m seqalign.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA \
-oc seqalign -or objects/seqalign -odi -od seqalign.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd seqalign.dump \
datatool: 2.20.1
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objects/seqalign'
/usr/bin/make -w -j4 --jobserver-auth=12,14 -f /<<PKGBUILDDIR>>/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/<<PKGBUILDDIR>>/c++/src/objects/general/general.asn /<<PKGBUILDDIR>>/c++/src/objects/biblio/biblio.asn /<<PKGBUILDDIR>>/c++/src/objects/medline/medline.asn /<<PKGBUILDDIR>>/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/<<PKGBUILDDIR>>/c++ builddir=/<<PKGBUILDDIR>>/c++/BUILD/build DATATOOL=/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/<<PKGBUILDDIR>>/c++/src
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objects/seqblock'
/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool -oR /<<PKGBUILDDIR>>/c++ \
-opm /<<PKGBUILDDIR>>/c++/src -m seqblock.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA \
-oc seqblock -or objects/seqblock -odi -od seqblock.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd seqblock.dump \
datatool: 2.20.1
make[7]: Leaving directory '/build/ncPlatform not defined for Linux armv7l -- please fix me
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
Platform not defined for Linux armv7l -- please fix me
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
Platform not defined for Linux armv7l -- please fix me
bi-blast+-iztKfv/ncbi-blast+-2.12.0+ds/c++/src/objects/seqblock'
/usr/bin/make -w -j4 --jobserver-auth=12,14 -f /<<PKGBUILDDIR>>/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub objects/seqloc/seqloc objects/seq/seq' IMPDEPS='/<<PKGBUILDDIR>>/c++/src/objects/general/general.asn /<<PKGBUILDDIR>>/c++/src/objects/biblio/biblio.asn /<<PKGBUILDDIR>>/c++/src/objects/medline/medline.asn /<<PKGBUILDDIR>>/c++/src/objects/pub/pub.asn /<<PKGBUILDDIR>>/c++/src/objects/seqloc/seqloc.asn /<<PKGBUILDDIR>>/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/<<PKGBUILDDIR>>/c++ builddir=/<<PKGBUILDDIR>>/c++/BUILD/build DATATOOL=/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/<<PKGBUILDDIR>>/c++/src
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objects/seqfeat'
/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool -oR /<<PKGBUILDDIR>>/c++ \
-opm /<<PKGBUILDDIR>>/c++/src -m seqfeat.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn" -oA \
-oc seqfeat -or objects/seqfeat -odi -od seqfeat.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd seqfeat.dump \
datatool: 2.20.1
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objects/seqfeat'
/usr/bin/make -w -j4 --jobserver-auth=12,14 -f /<<PKGBUILDDIR>>/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/<<PKGBUILDDIR>>/c++/src/objects/general/general.asn /<<PKGBUILDDIR>>/c++/src/objects/biblio/biblio.asn /<<PKGBUILDDIR>>/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/<<PKGBUILDDIR>>/c++ builddir=/<<PKGBUILDDIR>>/c++/BUILD/build DATATOOL=/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/<<PKGBUILDDIR>>/c++/src
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objects/seqloc'
/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool -oR /<<PKGBUILDDIR>>/c++ \
-opm /<<PKGBUILDDIR>>/c++/src -m seqloc.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn" -oA \
-oc seqloc -or objects/seqloc -odi -od seqloc.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd seqloc.dump \
datatool: 2.20.1
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objects/seqloc'
/usr/bin/make -w -j4 --jobserver-auth=12,14 -f /<<PKGBUILDDIR>>/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/<<PKGBUILDDIR>>/c++/src/objects/general/general.asn /<<PKGBUILDDIR>>/c++/smake[7]: warning: -j4 forced in submake: resetting jobserver mode.
Platform not defined for Linux armv7l -- please fix me
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/scoremat'
cd objects/blast/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blast'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seqcode'
cd objects/blastdb/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blastdb'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seqset'
cd objects/genomecoll/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
cd /<<PKGBUILDDIR>>/c++/src/objects/blast && /<<PKGBUILDDIR>>/c++/BUILD/build/new_module.sh blast all
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/genomecoll'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
cd /<<PKGBUILDDIR>>/c++/src/objects/blastdb && /<<PKGBUILDDIR>>/c++/BUILD/build/new_module.sh blastdb all
cd /<<PKGBUILDDIR>>/c++/src/objects/genomecoll && /<<PKGBUILDDIR>>/c++/BUILD/build/new_module.sh genome_collection all
Platform not defined for Linux armv7l -- please fix me
Platform not defined for Linux armv7l -- please fix me
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
Platform not defined for Linux armv7l -- please fix me
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /<<PKGBUILDDIR>>/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/<<PKGBUILDDIR>>/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/<<PKGBUILDDIR>>/c++ builddir=/<<PKGBUILDDIR>>/c++/BUILD/build DATATOOL=/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/<<PKGBUILDDIR>>/c++/src all
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objects/blastdb'
/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool -oR /<<PKGBUILDDIR>>/c++ \
-opm /<<PKGBUILDDIR>>/c++/src -m blastdb.asn -M "objects/seqloc/seqloc.asn" -oA \
-oc blastdb -or objects/blastdb -odi -od blastdb.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd blastdb.dump \
datatool: 2.20.1
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objects/blastdb'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objects/blastdb'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objects/blastdb'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blastdb'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blastdb'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blastdb'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blastdb'
/usr/bin/make[4] (Makefile.blastdb.lib): Nothing to be done for `export-headers'.
/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /<<PKGBUILDDIR>>/c++/src/build-system/Makefile.module MODULE=genome_collection MODULE_PATH=objects/genomecoll MODULE_ASN=genome_collection.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/<<PKGBUILDDIR>>/c++/src/objects/general/general.asn /<<PKGBUILDDIR>>/c++/src/objects/seqloc/seqloc.asn /<<PKGBUILDDIR>>/c++/src/objects/seqfeat/seqfeat.asn /<<PKGBUILDDIR>>/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/<<PKGBUILDDIR>>/c++ builddir=/<<PKGBUILDDIR>>/c++/BUILD/build DATATOOL=/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/<<PKGBUILDDIR>>/c++/src all
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objects/genomecoll'
/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool -oR /<<PKGBUILDDIR>>/c++ \
-opm /<<PKGBUILDDIR>>/c++/src -m genome_collection.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA \
-oc genome_collection -or objects/genomecoll -odi -od genome_collection.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd genome_collection.dump \
datatool: 2.20.1
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objects/genomecoll'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objects/genomecoll'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objects/genomecoll'
cd /<<PKGBUILDDIR>>/c++/src/objects/genomecoll && /<<PKGBUILDDIR>>/c++/BUILD/build/new_module.sh gencoll_client all
Waiting for /<<PKGBUILDDIR>>/c++/src/objects/genomecoll/make_asn.lock/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /<<PKGBUILDDIR>>/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/<<PKGBUILDDIR>>/c++/src/objects/scoremat/scoremat.asn /<<PKGBUILDDIR>>/c++/src/objects/seq/seq.asn /<<PKGBUILDDIR>>/c++/src/objects/seqset/seqset.asn /<<PKGBUILDDIR>>/c++/src/objects/seqloc/seqloc.asn /<<PKGBUILDDIR>>/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/<<PKGBUILDDIR>>/c++ builddir=/<<PKGBUILDDIR>>/c++/BUILD/build DATATOOL=/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/<<PKGBUILDDIR>>/c++/src all
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objects/blast'
/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool -oR /<<PKGBUILDDIR>>/c++ \
-opm /<<PKGBUILDDIR>>/c++/src -m blast.asn -M "objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn" -oA \
-oc blast -or objects/blast -odi -od blast.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd blast.dump \
datatool: 2.20.1
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objects/blast'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objects/blast'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objects/blast'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blast'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blast'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blast'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blast'
/usr/bin/make[4] (Makefile.blast.lib): Nothing to be done for `export-headers'.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blast'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blast'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blast'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blast'
/usr/bin/make[4] (Makefile.xnetblastcli.lib): Nothing to be done for `export-headers'.
rc/objects/biblio/biblio.asn /<<PKGBUILDDIR>>/c++/src/objects/medline/medline.asn /<<PKGBUILDDIR>>/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/<<PKGBUILDDIR>>/c++ builddir=/<<PKGBUILDDIR>>/c++/BUILD/build DATATOOL=/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/<<PKGBUILDDIR>>/c++/src
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objects/seqres'
/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool -oR /<<PKGBUILDDIR>>/c++ \
-opm /<<PKGBUILDDIR>>/c++/src -m seqres.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA \
-oc seqres -or objects/seqres -odi -od seqres.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd seqres.dump \
datatool: 2.20.1
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objects/seqres'
/usr/bin/make -w -j4 --jobserver-auth=12,14 -f /<<PKGBUILDDIR>>/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/<<PKGBUILDDIR>>/c++/src/objects/general/general.asn /<<PKGBUILDDIR>>/c++/src/objects/seq/seq.asn /<<PKGBUILDDIR>>/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/<<PKGBUILDDIR>>/c++ builddir=/<<PKGBUILDDIR>>/c++/BUILD/build DATATOOL=/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/<<PKGBUILDDIR>>/c++/src
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objects/seqtable'
/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool -oR /<<PKGBUILDDIR>>/c++ \
-opm /<<PKGBUILDDIR>>/c++/src -m seqtable.asn -M "objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn" -oA \
-oc seqtable -or objects/seqtable -odi -od seqtable.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd seqtable.dump \
datatool: 2.20.1
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objects/seqtable'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seq'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seq'
cd /<<PKGBUILDDIR>>/c++/src/objects/seq && /<<PKGBUILDDIR>>/c++/BUILD/build/new_module.sh seq all
Platform not defined for Linux armv7l -- please fix me
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /<<PKGBUILDDIR>>/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/<<PKGBUILDDIR>>/c++/src/objects/general/general.asn /<<PKGBUILDDIR>>/c++/src/objects/biblio/biblio.asn /<<PKGBUILDDIR>>/c++/src/objects/pub/pub.asn /<<PKGBUILDDIR>>/c++/src/objects/medline/medline.asn /<<PKGBUILDDIR>>/c++/src/objects/seqloc/seqloc.asn /<<PKGBUILDDIR>>/c++/src/objects/seqblock/seqblock.asn /<<PKGBUILDDIR>>/c++/src/objects/seqalign/seqalign.asn /<<PKGBUILDDIR>>/c++/src/objects/seqfeat/seqfeat.asn /<<PKGBUILDDIR>>/c++/src/objects/seqres/seqres.asn /<<PKGBUILDDIR>>/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/<<PKGBUILDDIR>>/c++ builddir=/<<PKGBUILDDIR>>/c++/BUILD/build DATATOOL=/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/<<PKGBUILDDIR>>/c++/src all
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objects/seq'
/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool -oR /<<PKGBUILDDIR>>/c++ \
-opm /<<PKGBUILDDIR>>/c++/src -m seq.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn" -oA \
-oc seq -or objects/seq -odi -od seq.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd seq.dump \
datatool: 2.20.1
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objects/seq'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objects/seq'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objects/seq'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seq'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seq'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seq'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seq'
/usr/bin/make[4] (Makefile.seq.lib): Nothing to be done for `export-headers'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blast'
cd objects/seqedit/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seqedit'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blastdb'
cd objects/seqsplit/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seqsplit'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
cd /<<PKGBUILDDIR>>/c++/src/objects/seqsplit && /<<PKGBUILDDIR>>/c++/BUILD/build/new_module.sh seqsplit all
cd /<<PKGBUILDDIR>>/c++/src/objects/seqedit && /<<PKGBUILDDIR>>/c++/BUILD/build/new_module.sh seqedit all
Platform not defined for Linux armv7l -- please fix me
Platform not defined for Linux armv7l -- please fix me
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
.
Acquired /<<PKGBUILDDIR>>/c++/src/objects/genomecoll/make_asn.lock for PID 18688 (make_asn)
/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /<<PKGBUILDDIR>>/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/<<PKGBUILDDIR>>/c++/src/objects/seqloc/seqloc.asn /<<PKGBUILDDIR>>/c++/src/objects/seqset/seqset.asn /<<PKGBUILDDIR>>/c++/src/objects/seq/seq.asn /<<PKGBUILDDIR>>/c++/src/objects/seqalign/seqalign.asn /<<PKGBUILDDIR>>/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/<<PKGBUILDDIR>>/c++ builddir=/<<PKGBUILDDIR>>/c++/BUILD/build DATATOOL=/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/<<PKGBUILDDIR>>/c++/src all
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objects/seqsplit'
/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool -oR /<<PKGBUILDDIR>>/c++ \
-opm /<<PKGBUILDDIR>>/c++/src -m seqsplit.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn" -oA \
-oc seqsplit -or objects/seqsplit -odi -od seqsplit.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd seqsplit.dump \
datatool: 2.20.1
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objects/seqsplit'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objects/seqsplit'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objects/seqsplit'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seqsplit'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seqsplit'
/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /<<PKGBUILDDIR>>/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/<<PKGBUILDDIR>>/c++/src/objects/general/general.asn /<<PKGBUILDDIR>>/c++/src/objects/seqloc/seqloc.asn /<<PKGBUILDDIR>>/c++/src/objects/seqset/seqset.asn /<<PKGBUILDDIR>>/c++/src/objects/seq/seq.asn /<<PKGBUILDDIR>>/c++/src/objects/seqalign/seqalign.asn /<<PKGBUILDDIR>>/c++/src/objects/seqfeat/seqfeat.asn /<<PKGBUILDDIR>>/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/<<PKGBUILDDIR>>/c++ builddir=/<<PKGBUILDDIR>>/c++/BUILD/build DATATOOL=/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/<<PKGBUILDDIR>>/c++/src all
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objects/seqedit'
/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool -oR /<<PKGBUILDDIR>>/c++ \
-opm /<<PKGBUILDDIR>>/c++/src -m seqedit.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn" -oA \
-oc seqedit -or objects/seqedit -odi -od seqedit.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd seqedit.dump \
datatool: 2.20.1
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objects/seqedit'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seqsplit'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objects/seqedit'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seqsplit'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objects/seqedit'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seqedit'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make[4] (Makefile.seqsplit.lib): Nothing to be done for `export-headers'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seqedit'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seqedit'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seqedit'
/usr/bin/make[4] (Makefile.seqedit.lib): Nothing to be done for `export-headers'.
Platform not defined for Linux armv7l -- please fix me
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /<<PKGBUILDDIR>>/c++/src/build-system/Makefile.module MODULE=gencoll_client MODULE_PATH=objects/genomecoll MODULE_ASN=gencoll_client.asn MODULE_IMPORT='objects/genomecoll/genome_collection' IMPDEPS='/<<PKGBUILDDIR>>/c++/src/objects/genomecoll/genome_collection.asn' IMPFILES='objects/genomecoll/genome_collection.asn' top_srcdir=/<<PKGBUILDDIR>>/c++ builddir=/<<PKGBUILDDIR>>/c++/BUILD/build DATATOOL=/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/<<PKGBUILDDIR>>/c++/src all
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objects/genomecoll'
/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool -oR /<<PKGBUILDDIR>>/c++ \
-opm /<<PKGBUILDDIR>>/c++/src -m gencoll_client.asn -M "objects/genomecoll/genome_collection.asn" -oA \
-oc gencoll_client -or objects/genomecoll -odi -od gencoll_client.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd gencoll_client.dump \
datatool: 2.20.1
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objects/genomecoll'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objects/genomecoll'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objects/genomecoll'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/genomecoll'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/genomecoll'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/genomecoll'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/genomecoll'
/usr/bin/make[4] (Makefile.genome_collection.lib): Nothing to be done for `export-headers'.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/genomecoll'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/genomecoll'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/genomecoll'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: *** No rule to make target '/<<PKGBUILDDIR>>/c++/BUILD/status/SQLITE3.enabled', needed by 'requirements'. Stop.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/genomecoll'
NOTE: skipping project "gencoll_client" due to unmet requirements
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/genomecoll'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/genomecoll'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seq'
cd objects/submit/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/submit'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
cd /<<PKGBUILDDIR>>/c++/src/objects/submit && /<<PKGBUILDDIR>>/c++/BUILD/build/new_module.sh submit all
Platform not defined for Linux armv7l -- please fix me
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /<<PKGBUILDDIR>>/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/<<PKGBUILDDIR>>/c++/src/objects/general/general.asn /<<PKGBUILDDIR>>/c++/src/objects/biblio/biblio.asn /<<PKGBUILDDIR>>/c++/src/objects/seq/seq.asn /<<PKGBUILDDIR>>/c++/src/objects/seqset/seqset.asn /<<PKGBUILDDIR>>/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/<<PKGBUILDDIR>>/c++ builddir=/<<PKGBUILDDIR>>/c++/BUILD/build DATATOOL=/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/<<PKGBUILDDIR>>/c++/src all
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objects/submit'
/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool -oR /<<PKGBUILDDIR>>/c++ \
-opm /<<PKGBUILDDIR>>/c++/src -m submit.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn" -oA \
-oc submit -or objects/submit -odi -od submit.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd submit.dump \
datatool: 2.20.1
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objects/submit'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objects/submit'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objects/submit'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/submit'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/submit'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/submit'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/submit'
/usr/bin/make[4] (Makefile.submit.lib): Nothing to be done for `export-headers'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seqsplit'
cd objects/variation/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/variation'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seqedit'
cd objects/id1/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
cd /<<PKGBUILDDIR>>/c++/src/objects/variation && /<<PKGBUILDDIR>>/c++/BUILD/build/new_module.sh variation all
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/id1'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
cd /<<PKGBUILDDIR>>/c++/src/objects/id1 && /<<PKGBUILDDIR>>/c++/BUILD/build/new_module.sh id1 all
Platform not defined for Linux armv7l -- please fix me
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
Platform not defined for Linux armv7l -- please fix me
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /<<PKGBUILDDIR>>/c++/src/build-system/Makefile.module MODULE=variation MODULE_PATH=objects/variation MODULE_ASN=variation.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub objects/seq/seq' IMPDEPS='/<<PKGBUILDDIR>>/c++/src/objects/seqfeat/seqfeat.asn /<<PKGBUILDDIR>>/c++/src/objects/general/general.asn /<<PKGBUILDDIR>>/c++/src/objects/seqloc/seqloc.asn /<<PKGBUILDDIR>>/c++/src/objects/pub/pub.asn /<<PKGBUILDDIR>>/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn' top_srcdir=/<<PKGBUILDDIR>>/c++ builddir=/<<PKGBUILDDIR>>/c++/BUILD/build DATATOOL=/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/<<PKGBUILDDIR>>/c++/src all
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objects/variation'
/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool -oR /<<PKGBUILDDIR>>/c++ \
-opm /<<PKGBUILDDIR>>/c++/src -m variation.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn" -oA \
-oc variation -or objects/variation -odi -od variation.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd variation.dump \
datatool: 2.20.1
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objects/variation'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objects/variation'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objects/variation'
/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /<<PKGBUILDDIR>>/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/<<PKGBUILDDIR>>/c++/src/objects/seqloc/seqloc.asn /<<PKGBUILDDIR>>/c++/src/objects/seqset/seqset.asn /<<PKGBUILDDIR>>/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/<<PKGBUILDDIR>>/c++ builddir=/<<PKGBUILDDIR>>/c++/BUILD/build DATATOOL=/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/<<PKGBUILDDIR>>/c++/src all
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objects/id1'
/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool -oR /<<PKGBUILDDIR>>/c++ \
-opm /<<PKGBUILDDIR>>/c++/src -m id1.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn" -oA \
-oc id1 -or objects/id1 -odi -od id1.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd id1.dump \
datatool: 2.20.1
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objects/id1'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objects/id1'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/variation'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/variation'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/genomecoll'
cd objects/id2/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/variation'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objects/id1'
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/id2'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/variation'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/id1'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/id1'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/id1'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/id1'
cd /<<PKGBUILDDIR>>/c++/src/objects/id2 && /<<PKGBUILDDIR>>/c++/BUILD/build/new_module.sh id2 all
/usr/bin/make[4] (Makefile.variation.lib): Nothing to be done for `export-headers'.
/usr/bin/make[4] (Makefile.id1.lib): Nothing to be done for `export-headers'.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/id1'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/id1'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/id1'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/id1'
/usr/bin/make[4] (Makefile.id1cli.lib): Nothing to be done for `export-headers'.
Platform not defined for Linux armv7l -- please fix me
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /<<PKGBUILDDIR>>/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/<<PKGBUILDDIR>>/c++/src/objects/seqsplit/seqsplit.asn /<<PKGBUILDDIR>>/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/<<PKGBUILDDIR>>/c++ builddir=/<<PKGBUILDDIR>>/c++/BUILD/build DATATOOL=/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/<<PKGBUILDDIR>>/c++/src all
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objects/id2'
/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool -oR /<<PKGBUILDDIR>>/c++ \
-opm /<<PKGBUILDDIR>>/c++/src -m id2.asn -M "objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn" -oA \
-oc id2 -or objects/id2 -odi -od id2.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd id2.dump \
datatool: 2.20.1
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objects/id2'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objects/id2'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objects/id2'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/id2'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/id2'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/id2'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/id2'
/usr/bin/make[4] (Makefile.id2.lib): Nothing to be done for `export-headers'.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/id2'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/id2'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/id2'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/id2'
/usr/bin/make[4] (Makefile.id2cli.lib): Nothing to be done for `export-headers'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/submit'
cd objects/taxon1/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/taxon1'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
cd /<<PKGBUILDDIR>>/c++/src/objects/taxon1 && /<<PKGBUILDDIR>>/c++/BUILD/build/new_module.sh taxon1 all
Platform not defined for Linux armv7l -- please fix me
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /<<PKGBUILDDIR>>/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/<<PKGBUILDDIR>>/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/<<PKGBUILDDIR>>/c++ builddir=/<<PKGBUILDDIR>>/c++/BUILD/build DATATOOL=/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/<<PKGBUILDDIR>>/c++/src all
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objects/taxon1'
/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool -oR /<<PKGBUILDDIR>>/c++ \
-opm /<<PKGBUILDDIR>>/c++/src -m taxon1.asn -M "objects/seqfeat/seqfeat.asn" -oA \
-oc taxon1 -or objects/taxon1 -odi -od taxon1.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd taxon1.dump \
datatool: 2.20.1
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objects/taxon1'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objects/taxon1'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objects/taxon1'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/taxon1'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/taxon1'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/taxon1'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/taxon1'
/usr/bin/make[4] (Makefile.taxon1.lib): Nothing to be done for `export-headers'.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/taxon1'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/taxon1'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/taxon1'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: *** No rule to make target '/<<PKGBUILDDIR>>/c++/BUILD/status/SQLITE3.enabled', needed by 'requirements'. Stop.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/taxon1'
NOTE: skipping project "local_taxon" due to unmet requirements
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/taxon1'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/taxon1'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/variation'
cd objects/blastxml/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blastxml'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
cd /<<PKGBUILDDIR>>/c++/src/objects/blastxml && /<<PKGBUILDDIR>>/c++/BUILD/build/new_module.sh blastxml all
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/id1'
cd objects/blastxml2/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blastxml2'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
cd /<<PKGBUILDDIR>>/c++/src/objects/blastxml2 && /<<PKGBUILDDIR>>/c++/BUILD/build/new_module.sh blastxml2 all
Platform not defined for Linux armv7l -- please fix me
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
Platform not defined for Linux armv7l -- please fix me
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
File blastxml.module not found. Using defaults...
/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /<<PKGBUILDDIR>>/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/<<PKGBUILDDIR>>/c++ builddir=/<<PKGBUILDDIR>>/c++/BUILD/build DATATOOL=/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/<<PKGBUILDDIR>>/c++/src all
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objects/blastxml'
/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool -oR /<<PKGBUILDDIR>>/c++ \
-opm /<<PKGBUILDDIR>>/c++/src -m blastxml.asn -M "" -oA \
-oc blastxml -or objects/blastxml -odi -od blastxml.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd blastxml.dump \
datatool: 2.20.1
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objects/blastxml'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objects/blastxml'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objects/blastxml'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blastxml'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blastxml'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blastxml'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blastxml'
/usr/bin/make[4] (Makefile.blastxml.lib): Nothing to be done for `export-headers'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/id2'
cd objtools/eutils/egquery/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
File blastxml2.module not found. Using defaults...
/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /<<PKGBUILDDIR>>/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/<<PKGBUILDDIR>>/c++ builddir=/<<PKGBUILDDIR>>/c++/BUILD/build DATATOOL=/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/<<PKGBUILDDIR>>/c++/src all
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objects/blastxml2'
/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool -oR /<<PKGBUILDDIR>>/c++ \
-opm /<<PKGBUILDDIR>>/c++/src -m blastxml2.asn -M "" -oA \
-oc blastxml2 -or objects/blastxml2 -odi -od blastxml2.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd blastxml2.dump \
datatool: 2.20.1
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objects/blastxml2'
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/egquery'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objects/blastxml2'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objects/blastxml2'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blastxml2'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
cd /<<PKGBUILDDIR>>/c++/src/objtools/eutils/egquery && /<<PKGBUILDDIR>>/c++/BUILD/build/new_module.sh --dtd egquery all
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blastxml2'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blastxml2'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blastxml2'
/usr/bin/make[4] (Makefile.blastxml2.lib): Nothing to be done for `export-headers'.
Platform not defined for Linux armv7l -- please fix me
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
File egquery.module not found. Using defaults...
/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /<<PKGBUILDDIR>>/c++/src/build-system/Makefile.module MODULE=egquery MODULE_PATH=objtools/eutils/egquery MODULE_ASN=egquery.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/<<PKGBUILDDIR>>/c++ builddir=/<<PKGBUILDDIR>>/c++/BUILD/build DATATOOL=/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/<<PKGBUILDDIR>>/c++/src all
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objtools/eutils/egquery'
/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool -oR /<<PKGBUILDDIR>>/c++ \
-opm /<<PKGBUILDDIR>>/c++/src -m egquery.dtd -M "" -oA \
-oc egquery -or objtools/eutils/egquery -odi -od egquery.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd egquery.dump \
datatool: 2.20.1
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objtools/eutils/egquery'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objtools/eutils/egquery'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objtools/eutils/egquery'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/egquery'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/egquery'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/egquery'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/egquery'
/usr/bin/make[4] (Makefile.egquery.lib): Nothing to be done for `export-headers'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/taxon1'
cd objtools/eutils/ehistory/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/ehistory'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
cd /<<PKGBUILDDIR>>/c++/src/objtools/eutils/ehistory && /<<PKGBUILDDIR>>/c++/BUILD/build/new_module.sh --dtd ehistory all
Platform not defined for Linux armv7l -- please fix me
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
File ehistory.module not found. Using defaults...
/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /<<PKGBUILDDIR>>/c++/src/build-system/Makefile.module MODULE=ehistory MODULE_PATH=objtools/eutils/ehistory MODULE_ASN=ehistory.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/<<PKGBUILDDIR>>/c++ builddir=/<<PKGBUILDDIR>>/c++/BUILD/build DATATOOL=/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/<<PKGBUILDDIR>>/c++/src all
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objtools/eutils/ehistory'
/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool -oR /<<PKGBUILDDIR>>/c++ \
-opm /<<PKGBUILDDIR>>/c++/src -m ehistory.dtd -M "" -oA \
-oc ehistory -or objtools/eutils/ehistory -odi -od ehistory.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd ehistory.dump \
datatool: 2.20.1
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objtools/eutils/ehistory'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objtools/eutils/ehistory'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objtools/eutils/ehistory'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/ehistory'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/ehistory'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/ehistory'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/ehistory'
/usr/bin/make[4] (Makefile.ehistory.lib): Nothing to be done for `export-headers'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blastxml'
cd objtools/eutils/einfo/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/einfo'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
cd /<<PKGBUILDDIR>>/c++/src/objtools/eutils/einfo && /<<PKGBUILDDIR>>/c++/BUILD/build/new_module.sh --dtd einfo all
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blastxml2'
cd objtools/eutils/elink/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/elink'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
cd /<<PKGBUILDDIR>>/c++/src/objtools/eutils/elink && /<<PKGBUILDDIR>>/c++/BUILD/build/new_module.sh --dtd elink all
Platform not defined for Linux armv7l -- please fix me
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
Platform not defined for Linux armv7l -- please fix me
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
File einfo.module not found. Using defaults...
/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /<<PKGBUILDDIR>>/c++/src/build-system/Makefile.module MODULE=einfo MODULE_PATH=objtools/eutils/einfo MODULE_ASN=einfo.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/<<PKGBUILDDIR>>/c++ builddir=/<<PKGBUILDDIR>>/c++/BUILD/build DATATOOL=/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/<<PKGBUILDDIR>>/c++/src all
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objtools/eutils/einfo'
/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool -oR /<<PKGBUILDDIR>>/c++ \
-opm /<<PKGBUILDDIR>>/c++/src -m einfo.dtd -M "" -oA \
-oc einfo -or objtools/eutils/einfo -odi -od einfo.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd einfo.dump \
datatool: 2.20.1
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objtools/eutils/einfo'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objtools/eutils/einfo'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objtools/eutils/einfo'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/einfo'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/einfo'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/einfo'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/einfo'
/usr/bin/make[4] (Makefile.einfo.lib): Nothing to be done for `export-headers'.
File elink.module not found. Using defaults...
/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /<<PKGBUILDDIR>>/c++/src/build-system/Makefile.module MODULE=elink MODULE_PATH=objtools/eutils/elink MODULE_ASN=elink.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/<<PKGBUILDDIR>>/c++ builddir=/<<PKGBUILDDIR>>/c++/BUILD/build DATATOOL=/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/<<PKGBUILDDIR>>/c++/src all
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objtools/eutils/elink'
/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool -oR /<<PKGBUILDDIR>>/c++ \
-opm /<<PKGBUILDDIR>>/c++/src -m elink.dtd -M "" -oA \
-oc elink -or objtools/eutils/elink -odi -od elink.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd elink.dump \
datatool: 2.20.1
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objtools/eutils/elink'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objtools/eutils/elink'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objtools/eutils/elink'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/egquery'
cd objects/entrez2/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/entrez2'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/elink'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/elink'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/elink'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/elink'
cd /<<PKGBUILDDIR>>/c++/src/objects/entrez2 && /<<PKGBUILDDIR>>/c++/BUILD/build/new_module.sh entrez2 all
/usr/bin/make[4] (Makefile.elink.lib): Nothing to be done for `export-headers'.
Platform not defined for Linux armv7l -- please fix me
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /<<PKGBUILDDIR>>/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/<<PKGBUILDDIR>>/c++ builddir=/<<PKGBUILDDIR>>/c++/BUILD/build DATATOOL=/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/<<PKGBUILDDIR>>/c++/src all
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objects/entrez2'
/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool -oR /<<PKGBUILDDIR>>/c++ \
-opm /<<PKGBUILDDIR>>/c++/src -m entrez2.asn -M "" -oA \
-oc entrez2 -or objects/entrez2 -odi -od entrez2.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd entrez2.dump \
datatool: 2.20.1
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objects/entrez2'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objects/entrez2'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objects/entrez2'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/entrez2'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/entrez2'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/entrez2'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/entrez2'
/usr/bin/make[4] (Makefile.entrez2.lib): Nothing to be done for `export-headers'.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/entrez2'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/entrez2'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/entrez2'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/entrez2'
/usr/bin/make[4] (Makefile.entrez2cli.lib): Nothing to be done for `export-headers'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/ehistory'
cd objtools/eutils/epost/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/epost'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
cd /<<PKGBUILDDIR>>/c++/src/objtools/eutils/epost && /<<PKGBUILDDIR>>/c++/BUILD/build/new_module.sh --dtd epost all
Platform not defined for Linux armv7l -- please fix me
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
File epost.module not found. Using defaults...
/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /<<PKGBUILDDIR>>/c++/src/build-system/Makefile.module MODULE=epost MODULE_PATH=objtools/eutils/epost MODULE_ASN=epost.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/<<PKGBUILDDIR>>/c++ builddir=/<<PKGBUILDDIR>>/c++/BUILD/build DATATOOL=/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/<<PKGBUILDDIR>>/c++/src all
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objtools/eutils/epost'
/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool -oR /<<PKGBUILDDIR>>/c++ \
-opm /<<PKGBUILDDIR>>/c++/src -m epost.dtd -M "" -oA \
-oc epost -or objtools/eutils/epost -odi -od epost.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd epost.dump \
datatool: 2.20.1
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objtools/eutils/epost'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objtools/eutils/epost'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objtools/eutils/epost'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/epost'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/epost'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/epost'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/epost'
/usr/bin/make[4] (Makefile.epost.lib): Nothing to be done for `export-headers'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/einfo'
cd objtools/eutils/esearch/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/esearch'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
cd /<<PKGBUILDDIR>>/c++/src/objtools/eutils/esearch && /<<PKGBUILDDIR>>/c++/BUILD/build/new_module.sh --dtd esearch all
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/elink'
cd objtools/eutils/espell/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/espell'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
cd /<<PKGBUILDDIR>>/c++/src/objtools/eutils/espell && /<<PKGBUILDDIR>>/c++/BUILD/build/new_module.sh --dtd espell all
Platform not defined for Linux armv7l -- please fix me
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
Platform not defined for Linux armv7l -- please fix me
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
File esearch.module not found. Using defaults...
/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /<<PKGBUILDDIR>>/c++/src/build-system/Makefile.module MODULE=esearch MODULE_PATH=objtools/eutils/esearch MODULE_ASN=esearch.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/<<PKGBUILDDIR>>/c++ builddir=/<<PKGBUILDDIR>>/c++/BUILD/build DATATOOL=/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/<<PKGBUILDDIR>>/c++/src all
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objtools/eutils/esearch'
/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool -oR /<<PKGBUILDDIR>>/c++ \
-opm /<<PKGBUILDDIR>>/c++/src -m esearch.dtd -M "" -oA \
-oc esearch -or objtools/eutils/esearch -odi -od esearch.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd esearch.dump \
datatool: 2.20.1
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objtools/eutils/esearch'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objtools/eutils/esearch'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objtools/eutils/esearch'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/esearch'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/esearch'
File espell.module not found. Using defaults...
/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /<<PKGBUILDDIR>>/c++/src/build-system/Makefile.module MODULE=espell MODULE_PATH=objtools/eutils/espell MODULE_ASN=espell.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/<<PKGBUILDDIR>>/c++ builddir=/<<PKGBUILDDIR>>/c++/BUILD/build DATATOOL=/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/<<PKGBUILDDIR>>/c++/src all
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objtools/eutils/espell'
/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool -oR /<<PKGBUILDDIR>>/c++ \
-opm /<<PKGBUILDDIR>>/c++/src -m espell.dtd -M "" -oA \
-oc espell -or objtools/eutils/espell -odi -od espell.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd espell.dump \
datatool: 2.20.1
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objtools/eutils/espell'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/esearch'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/esearch'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objtools/eutils/espell'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objtools/eutils/espell'
/usr/bin/make[4] (Makefile.esearch.lib): Nothing to be done for `export-headers'.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/espell'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/espell'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/espell'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/espell'
/usr/bin/make[4] (Makefile.espell.lib): Nothing to be done for `export-headers'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/entrez2'
cd objtools/eutils/esummary/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/esummary'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
cd /<<PKGBUILDDIR>>/c++/src/objtools/eutils/esummary && /<<PKGBUILDDIR>>/c++/BUILD/build/new_module.sh --dtd esummary all
Platform not defined for Linux armv7l -- please fix me
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
File esummary.module not found. Using defaults...
/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /<<PKGBUILDDIR>>/c++/src/build-system/Makefile.module MODULE=esummary MODULE_PATH=objtools/eutils/esummary MODULE_ASN=esummary.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/<<PKGBUILDDIR>>/c++ builddir=/<<PKGBUILDDIR>>/c++/BUILD/build DATATOOL=/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/<<PKGBUILDDIR>>/c++/src all
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objtools/eutils/esummary'
/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool -oR /<<PKGBUILDDIR>>/c++ \
-opm /<<PKGBUILDDIR>>/c++/src -m esummary.dtd -M "" -oA \
-oc esummary -or objtools/eutils/esummary -odi -od esummary.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd esummary.dump \
datatool: 2.20.1
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objtools/eutils/esummary'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objtools/eutils/esummary'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objtools/eutils/esummary'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/esummary'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/esummary'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/esummary'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/esummary'
/usr/bin/make[4] (Makefile.esummary.lib): Nothing to be done for `export-headers'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/epost'
cd objtools/eutils/uilist/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/uilist'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
cd /<<PKGBUILDDIR>>/c++/src/objtools/eutils/uilist && /<<PKGBUILDDIR>>/c++/BUILD/build/new_module.sh --dtd uilist all
Platform not defined for Linux armv7l -- please fix me
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
File uilist.module not found. Using defaults...
/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /<<PKGBUILDDIR>>/c++/src/build-system/Makefile.module MODULE=uilist MODULE_PATH=objtools/eutils/uilist MODULE_ASN=uilist.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/<<PKGBUILDDIR>>/c++ builddir=/<<PKGBUILDDIR>>/c++/BUILD/build DATATOOL=/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/<<PKGBUILDDIR>>/c++/src all
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objtools/eutils/uilist'
/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool -oR /<<PKGBUILDDIR>>/c++ \
-opm /<<PKGBUILDDIR>>/c++/src -m uilist.dtd -M "" -oA \
-oc uilist -or objtools/eutils/uilist -odi -od uilist.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd uilist.dump \
datatool: 2.20.1
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objtools/eutils/uilist'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objtools/eutils/uilist'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objtools/eutils/uilist'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/uilist'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/uilist'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/uilist'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/uilist'
/usr/bin/make[4] (Makefile.uilist.lib): Nothing to be done for `export-headers'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/esearch'
cd objects/gbseq/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/gbseq'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/espell'
cd objects/medlars/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/medlars'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
cd /<<PKGBUILDDIR>>/c++/src/objects/gbseq && /<<PKGBUILDDIR>>/c++/BUILD/build/new_module.sh gbseq all
cd /<<PKGBUILDDIR>>/c++/src/objects/medlars && /<<PKGBUILDDIR>>/c++/BUILD/build/new_module.sh medlars all
Platform not defined for Linux armv7l -- please fix me
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
Platform not defined for Linux armv7l -- please fix me
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /<<PKGBUILDDIR>>/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/<<PKGBUILDDIR>>/c++/src/objects/general/general.asn /<<PKGBUILDDIR>>/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/<<PKGBUILDDIR>>/c++ builddir=/<<PKGBUILDDIR>>/c++/BUILD/build DATATOOL=/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/<<PKGBUILDDIR>>/c++/src all
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objects/medlars'
/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool -oR /<<PKGBUILDDIR>>/c++ \
-opm /<<PKGBUILDDIR>>/c++/src -m medlars.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA \
-oc medlars -or objects/medlars -odi -od medlars.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd medlars.dump \
datatool: 2.20.1
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objects/medlars'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objects/medlars'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objects/medlars'
/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /<<PKGBUILDDIR>>/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/<<PKGBUILDDIR>>/c++ builddir=/<<PKGBUILDDIR>>/c++/BUILD/build DATATOOL=/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/<<PKGBUILDDIR>>/c++/src all
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objects/gbseq'
/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool -oR /<<PKGBUILDDIR>>/c++ \
-opm /<<PKGBUILDDIR>>/c++/src -m gbseq.asn -M "" -oA \
-oc gbseq -or objects/gbseq -odi -od gbseq.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd gbseq.dump \
datatool: 2.20.1
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objects/gbseq'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/medlars'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objects/gbseq'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/medlars'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/medlars'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/medlars'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objects/gbseq'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/gbseq'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/gbseq'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/gbseq'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make[4] (Makefile.medlars.lib): Nothing to be done for `export-headers'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/gbseq'
/usr/bin/make[4] (Makefile.gbseq.lib): Nothing to be done for `export-headers'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/esummary'
cd objects/pubmed/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/pubmed'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
cd /<<PKGBUILDDIR>>/c++/src/objects/pubmed && /<<PKGBUILDDIR>>/c++/BUILD/build/new_module.sh pubmed all
Platform not defined for Linux armv7l -- please fix me
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /<<PKGBUILDDIR>>/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/<<PKGBUILDDIR>>/c++/src/objects/general/general.asn /<<PKGBUILDDIR>>/c++/src/objects/biblio/biblio.asn /<<PKGBUILDDIR>>/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/<<PKGBUILDDIR>>/c++ builddir=/<<PKGBUILDDIR>>/c++/BUILD/build DATATOOL=/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/<<PKGBUILDDIR>>/c++/src all
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objects/pubmed'
/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool -oR /<<PKGBUILDDIR>>/c++ \
-opm /<<PKGBUILDDIR>>/c++/src -m pubmed.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA \
-oc pubmed -or objects/pubmed -odi -od pubmed.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd pubmed.dump \
datatool: 2.20.1
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objects/pubmed'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objects/pubmed'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objects/pubmed'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/pubmed'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/pubmed'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/pubmed'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/pubmed'
/usr/bin/make[4] (Makefile.pubmed.lib): Nothing to be done for `export-headers'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/uilist'
cd objects/mla/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/mla'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
cd /<<PKGBUILDDIR>>/c++/src/objects/mla && /<<PKGBUILDDIR>>/c++/BUILD/build/new_module.sh mla all
Platform not defined for Linux armv7l -- please fix me
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /<<PKGBUILDDIR>>/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/<<PKGBUILDDIR>>/c++/src/objects/biblio/biblio.asn /<<PKGBUILDDIR>>/c++/src/objects/medline/medline.asn /<<PKGBUILDDIR>>/c++/src/objects/medlars/medlars.asn /<<PKGBUILDDIR>>/c++/src/objects/pubmed/pubmed.asn /<<PKGBUILDDIR>>/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/<<PKGBUILDDIR>>/c++ builddir=/<<PKGBUILDDIR>>/c++/BUILD/build DATATOOL=/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/<<PKGBUILDDIR>>/c++/src all
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objects/mla'
/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool -oR /<<PKGBUILDDIR>>/c++ \
-opm /<<PKGBUILDDIR>>/c++/src -m mla.asn -M "objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn" -oA \
-oc mla -or objects/mla -odi -od mla.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd mla.dump \
datatool: 2.20.1
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objects/mla'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objects/mla'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objects/mla'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/mla'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/mla'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/mla'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/mla'
/usr/bin/make[4] (Makefile.mla.lib): Nothing to be done for `export-headers'.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/mla'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/mla'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/mla'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/mla'
/usr/bin/make[4] (Makefile.mlacli.lib): Nothing to be done for `export-headers'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/gbseq'
cd objects/taxon3/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/taxon3'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/medlars'
cd objects/valid/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 sources
cd /<<PKGBUILDDIR>>/c++/src/objects/taxon3 && /<<PKGBUILDDIR>>/c++/BUILD/build/new_module.sh taxon3 all
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/valid'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
cd /<<PKGBUILDDIR>>/c++/src/objects/valid && /<<PKGBUILDDIR>>/c++/BUILD/build/new_module.sh valid all
Platform not defined for Linux armv7l -- please fix me
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
Platform not defined for Linux armv7l -- please fix me
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /<<PKGBUILDDIR>>/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/<<PKGBUILDDIR>>/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/<<PKGBUILDDIR>>/c++ builddir=/<<PKGBUILDDIR>>/c++/BUILD/build DATATOOL=/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/<<PKGBUILDDIR>>/c++/src all
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objects/taxon3'
/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool -oR /<<PKGBUILDDIR>>/c++ \
-opm /<<PKGBUILDDIR>>/c++/src -m taxon3.asn -M "objects/seqfeat/seqfeat.asn" -oA \
-oc taxon3 -or objects/taxon3 -odi -od taxon3.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd taxon3.dump \
datatool: 2.20.1
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objects/taxon3'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objects/taxon3'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/pubmed'
cd objects/general/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=general UNIX_PROJ="" sources= configurables=configurables.null
/usr/bin/make -w -j4 --jobserver-auth=7,8 -f /<<PKGBUILDDIR>>/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/<<PKGBUILDDIR>>/c++ builddir=/<<PKGBUILDDIR>>/c++/BUILD/build DATATOOL=/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/<<PKGBUILDDIR>>/c++/src all
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objects/valid'
/<<PKGBUILDDIR>>/c++/BUILD/bin/datatool -oR /<<PKGBUILDDIR>>/c++ \
-opm /<<PKGBUILDDIR>>/c++/src -m valid.asn -M "" -oA \
-oc valid -or objects/valid -odi -od valid.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd valid.dump \
datatool: 2.20.1
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objects/valid'
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/general'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/src/objects/valid'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objects/taxon3'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/taxon3'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/src/objects/valid'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/taxon3'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/taxon3'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/valid'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/valid'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/taxon3'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/valid'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/valid'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/general'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make[4] (Makefile.taxon3.lib): Nothing to be done for `export-headers'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/general'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/general'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make[4] (Makefile.valid.lib): Nothing to be done for `export-headers'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/general'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objects/general TMPL=general -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/mla'
cd objects/seqcode/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=seqcode UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seqcode'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seqcode'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seqcode'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seqcode'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seqcode'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objects/seqcode TMPL=seqcode -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/taxon3'
cd objects/blastxml/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blastxml UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/valid'
cd objects/blastxml2/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blastxml2 UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blastxml'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blastxml2'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blastxml'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blastxml'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blastxml'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blastxml2'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blastxml'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blastxml2'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blastxml2'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blastxml2'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objects/blastxml TMPL=blastxml -w -j4 --jobserver-auth=7,8 all
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objects/blastxml2 TMPL=blastxml2 -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/general/Date_.cpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/general/general___.cpp:2:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/seqcode/Seq_code_set_.cpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/seqcode/seqcode___.cpp:2:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/blastxml/BlastOutput_.cpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/blastxml/blastxml___.cpp:2:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/blastxml2/BlastOutput2_.cpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/blastxml2/blastxml2___.cpp:2:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/objectinfo.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/general/uoconv.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/objects/general/uoconv.cpp:36:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seqcode'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/seqcode/seqcode__.cpp -o seqcode__.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/seqcode/seqcode___.cpp -o seqcode___.o
/bin/rm -f libseqcode.so .libseqcode.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libseqcode.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC seqcode__.o seqcode___.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lxser -lxncbi -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqcode.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libseqcode.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libseqcode.so
/bin/ln -f .seqcode.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.seqcode.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seqcode'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seqcode'
cd objtools/eutils/egquery/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=egquery UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/egquery'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/egquery'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/egquery'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/egquery'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/egquery'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objtools/eutils/egquery TMPL=egquery -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
In file included from /usr/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘static void* ncbi::CStlClassInfoFunctions<Container>::AddElement(const ncbi::CContainerTypeInfo*, ncbi::TObjectPtr, ncbi::TConstObjectPtr, ncbi::ESerialRecursionMode) [with Container = std::vector<double>]’ at /<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:239:36:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘static void* ncbi::CStlClassInfoFunctions<Container>::AddElement(const ncbi::CContainerTypeInfo*, ncbi::TObjectPtr, ncbi::TConstObjectPtr, ncbi::ESerialRecursionMode) [with Container = std::vector<double>]’ at /<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:242:36:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘static void* ncbi::CStlClassInfoFunctions<Container>::AddElementIn(const ncbi::CContainerTypeInfo*, ncbi::TObjectPtr, ncbi::CObjectIStream&) [with Container = std::vector<double>]’ at /<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:254:32:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blastxml'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/blastxml/blastxml__.cpp -o blastxml__.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/blastxml/blastxml___.cpp -o blastxml___.o
/bin/rm -f libblastxml.so .libblastxml.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libblastxml.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC blastxml__.o blastxml___.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lxser -lxncbi -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libblastxml.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libblastxml.so
/bin/ln -f .blastxml.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.blastxml.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blastxml'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blastxml'
cd objtools/eutils/ehistory/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=ehistory UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/ehistory'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/ehistory'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/ehistory'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/ehistory'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/ehistory'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objtools/eutils/ehistory TMPL=ehistory -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objtools/eutils/egquery/EGQueryResult_.cpp:39,
from /<<PKGBUILDDIR>>/c++/src/objtools/eutils/egquery/egquery___.cpp:2:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blastxml2'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/blastxml2/blastxml2__.cpp -o blastxml2__.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/blastxml2/blastxml2___.cpp -o blastxml2___.o
/bin/rm -f libblastxml2.so .libblastxml2.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libblastxml2.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC blastxml2__.o blastxml2___.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lxser -lxutil -lxncbi -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml2.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libblastxml2.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libblastxml2.so
/bin/ln -f .blastxml2.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.blastxml2.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blastxml2'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blastxml2'
cd objtools/eutils/einfo/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=einfo UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/einfo'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/einfo'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/einfo'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/einfo'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/einfo'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objtools/eutils/einfo TMPL=einfo -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objtools/eutils/ehistory/EHistoryItem_.cpp:39,
from /<<PKGBUILDDIR>>/c++/src/objtools/eutils/ehistory/ehistory___.cpp:2:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/egquery'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/eutils/egquery/egquery__.cpp -o egquery__.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/eutils/egquery/egquery___.cpp -o egquery___.o
/bin/rm -f libegquery.so .libegquery.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libegquery.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC egquery__.o egquery___.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libegquery.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libegquery.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libegquery.so
/bin/ln -f .egquery.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.egquery.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/egquery'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/egquery'
cd objtools/eutils/elink/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=elink UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/elink'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/elink'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/elink'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/elink'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/elink'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objtools/eutils/elink TMPL=elink -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/ehistory'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/eutils/ehistory/ehistory__.cpp -o ehistory__.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/eutils/ehistory/ehistory___.cpp -o ehistory___.o
/bin/rm -f libehistory.so .libehistory.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libehistory.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC ehistory__.o ehistory___.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libehistory.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libehistory.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libehistory.so
/bin/ln -f .ehistory.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.ehistory.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/ehistory'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/ehistory'
cd objects/entrez2/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=entrez2 UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/entrez2'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/entrez2'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/entrez2'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/entrez2'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/entrez2'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objects/entrez2 TMPL=entrez2 -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘ncbi::objects::CUser_field_Base::TNum ncbi::objects::s_SetContainerData(TUFData&, ncbi::CConstObjectInfo)’ at /<<PKGBUILDDIR>>/c++/src/objects/general/uoconv.cpp:284:42,
inlined from ‘ncbi::CRef<ncbi::objects::CUser_field> ncbi::objects::s_PackAsUserField(ncbi::CConstObjectInfo, const std::string*)’ at /<<PKGBUILDDIR>>/c++/src/objects/general/uoconv.cpp:363:22:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objtools/eutils/einfo/DbInfo_.cpp:39,
from /<<PKGBUILDDIR>>/c++/src/objtools/eutils/einfo/einfo___.cpp:2:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objtools/eutils/elink/ELinkResult_.cpp:39,
from /<<PKGBUILDDIR>>/c++/src/objtools/eutils/elink/elink___.cpp:2:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/entrez2/E2Reply_.cpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/entrez2/entrez2___.cpp:2:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/general'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/general/general__.cpp -o general__.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/general/general___.cpp -o general___.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/general/uoconv.cpp -o uoconv.o
/bin/rm -f libgeneral.so .libgeneral.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libgeneral.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC general__.o general___.o uoconv.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lxser -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgeneral.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libgeneral.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libgeneral.so
/bin/ln -f .general.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.general.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/general'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/general'
cd objtools/eutils/epost/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=epost UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/epost'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/epost'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/epost'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/epost'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/epost'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objtools/eutils/epost TMPL=epost -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/einfo'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/eutils/einfo/einfo__.cpp -o einfo__.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/eutils/einfo/einfo___.cpp -o einfo___.o
/bin/rm -f libeinfo.so .libeinfo.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libeinfo.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC einfo__.o einfo___.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libeinfo.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libeinfo.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libeinfo.so
/bin/ln -f .einfo.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.einfo.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/einfo'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/einfo'
cd objtools/eutils/esearch/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=esearch UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/esearch'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/esearch'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/esearch'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/esearch'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/esearch'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objtools/eutils/esearch TMPL=esearch -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objtools/eutils/epost/EPostResult_.cpp:39,
from /<<PKGBUILDDIR>>/c++/src/objtools/eutils/epost/epost___.cpp:2:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objtools/eutils/esearch/ESearchResult_.cpp:39,
from /<<PKGBUILDDIR>>/c++/src/objtools/eutils/esearch/esearch___.cpp:2:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/epost'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/eutils/epost/epost__.cpp -o epost__.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/eutils/epost/epost___.cpp -o epost___.o
/bin/rm -f libepost.so .libepost.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libepost.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC epost__.o epost___.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libepost.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libepost.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libepost.so
/bin/ln -f .epost.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.epost.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/epost'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/epost'
cd objtools/eutils/espell/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=espell UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/espell'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/espell'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/espell'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/espell'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/espell'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objtools/eutils/espell TMPL=espell -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/esearch'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/eutils/esearch/esearch__.cpp -o esearch__.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/eutils/esearch/esearch___.cpp -o esearch___.o
/bin/rm -f libesearch.so .libesearch.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libesearch.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC esearch__.o esearch___.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libesearch.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libesearch.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libesearch.so
/bin/ln -f .esearch.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.esearch.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/esearch'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/esearch'
cd objtools/eutils/esummary/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=esummary UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/esummary'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/esummary'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/esummary'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/esummary'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/esummary'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objtools/eutils/esummary TMPL=esummary -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/elink'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/eutils/elink/elink__.cpp -o elink__.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/eutils/elink/elink___.cpp -o elink___.o
/bin/rm -f libelink.so .libelink.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libelink.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC elink__.o elink___.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libelink.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libelink.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libelink.so
/bin/ln -f .elink.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.elink.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/elink'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/elink'
cd objtools/eutils/uilist/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=uilist UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/uilist'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/uilist'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/uilist'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/uilist'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/uilist'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objtools/eutils/uilist TMPL=uilist -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/entrez2'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/entrez2/entrez2__.cpp -o entrez2__.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/entrez2/entrez2___.cpp -o entrez2___.o
/bin/rm -f libentrez2.so .libentrez2.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libentrez2.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC entrez2__.o entrez2___.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lxser -lxutil -lxncbi -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrez2.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libentrez2.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libentrez2.so
/bin/ln -f .entrez2.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.entrez2.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/entrez2'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/entrez2'
cd objects/gbseq/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=gbseq UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/gbseq'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/gbseq'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/gbseq'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/gbseq'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/gbseq'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objects/gbseq TMPL=gbseq -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objtools/eutils/espell/ESpellResult_.cpp:39,
from /<<PKGBUILDDIR>>/c++/src/objtools/eutils/espell/espell___.cpp:2:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/espell'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/eutils/espell/espell__.cpp -o espell__.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/eutils/espell/espell___.cpp -o espell___.o
/bin/rm -f libespell.so .libespell.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libespell.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC espell__.o espell___.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libespell.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libespell.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libespell.so
/bin/ln -f .espell.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.espell.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/espell'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/espell'
cd objects/valid/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=valid UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/valid'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/valid'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/valid'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/valid'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/valid'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objects/valid TMPL=valid -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objtools/eutils/esummary/DocSum_.cpp:39,
from /<<PKGBUILDDIR>>/c++/src/objtools/eutils/esummary/esummary___.cpp:2:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objtools/eutils/uilist/IdList_.cpp:39,
from /<<PKGBUILDDIR>>/c++/src/objtools/eutils/uilist/uilist___.cpp:2:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/gbseq/GBAltSeqData_.cpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/gbseq/gbseq___.cpp:2:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/uilist'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/eutils/uilist/uilist__.cpp -o uilist__.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/eutils/uilist/uilist___.cpp -o uilist___.o
/bin/rm -f libuilist.so .libuilist.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libuilist.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC uilist__.o uilist___.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libuilist.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libuilist.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libuilist.so
/bin/ln -f .uilist.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.uilist.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/uilist'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/uilist'
cd objects/biblio/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=biblio UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/biblio'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/biblio'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/biblio'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/biblio'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/biblio'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objects/biblio TMPL=biblio -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/esummary'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/eutils/esummary/esummary__.cpp -o esummary__.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/eutils/esummary/esummary___.cpp -o esummary___.o
/bin/rm -f libesummary.so .libesummary.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libesummary.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC esummary__.o esummary___.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libesummary.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libesummary.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libesummary.so
/bin/ln -f .esummary.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.esummary.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/esummary'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/esummary'
cd objects/entrez2/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=entrez2cli UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/entrez2'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/entrez2'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/entrez2'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/entrez2'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/entrez2'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objects/entrez2 TMPL=entrez2cli -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/valid/Comment_rule_.cpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/valid/valid___.cpp:2:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/valid/Comment_set.cpp:49,
from /<<PKGBUILDDIR>>/c++/src/objects/valid/valid__.cpp:3:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbictype.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistre.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_stack.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/util/error_codes.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/util/static_set.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/valid/Comment_rule.cpp:40,
from /<<PKGBUILDDIR>>/c++/src/objects/valid/valid__.cpp:2:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objects/valid/Comment_set.cpp: In function ‘void ncbi::objects::s_InitializeStructuredCommentRules()’:
/<<PKGBUILDDIR>>/c++/src/objects/valid/Comment_set.cpp:118:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
118 | auto_ptr<CObjectIStream> in;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/biblio/Affil_.cpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/biblio/biblio___.cpp:2:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/entrez2/entrez2_client_.cpp:39:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/entrez2/entrez2_client_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/entrez2/entrez2_client.hpp:42,
from /<<PKGBUILDDIR>>/c++/src/objects/entrez2/entrez2_client.cpp:42:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator<long long int>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<long long int>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘ncbi::CRef<ncbi::objects::CEntrez2_docsum_list> ncbi::objects::CEntrez2Client::GetDocsums(TUid, const std::string&)’ at /<<PKGBUILDDIR>>/c++/src/objects/entrez2/entrez2_client.cpp:259:19:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘ncbi::CRef<ncbi::objects::CEntrez2_link_set> ncbi::objects::CEntrez2Client::GetNeighbors(TUid, const std::string&, const std::string&)’ at /<<PKGBUILDDIR>>/c++/src/objects/entrez2/entrez2_client.cpp:114:19:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<long long int>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void ncbi::objects::CEntrez2Client::Query(const std::string&, const std::string&, std::vector<long long int>&, size_t, size_t, ncbi::objects::CEntrez2Client_Base::TReply*)’ at /<<PKGBUILDDIR>>/c++/src/objects/entrez2/entrez2_client.cpp:188:30:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘void ncbi::objects::CEntrez2Client::FilterIds(const std::vector<long long int>&, const std::string&, const std::string&, std::vector<long long int>&)’ at /<<PKGBUILDDIR>>/c++/src/objects/entrez2/entrez2_client.cpp:234:44:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void ncbi::objects::CEntrez2Client::GetNeighbors(const std::vector<long long int>&, const std::string&, const std::string&, std::vector<long long int>&)’ at /<<PKGBUILDDIR>>/c++/src/objects/entrez2/entrez2_client.cpp:102:32:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘void ncbi::objects::CEntrez2Client::GetNeighbors(TUid, const std::string&, const std::string&, std::vector<long long int>&)’ at /<<PKGBUILDDIR>>/c++/src/objects/entrez2/entrez2_client.cpp:80:19:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/valid'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/valid/valid__.cpp -o valid__.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/valid/valid___.cpp -o valid___.o
/bin/rm -f libvalid.so .libvalid.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libvalid.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC valid__.o valid___.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lgeneral -lxser -lxregexp -lxutil -lxncbi -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvalid.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libvalid.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libvalid.so
/bin/ln -f .valid.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.valid.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/valid'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/valid'
cd objtools/eutils/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=eutils UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/api'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/api'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/api'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objtools/eutils/api TMPL=eutils -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/gbseq'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/gbseq/gbseq__.cpp -o gbseq__.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/gbseq/gbseq___.cpp -o gbseq___.o
/bin/rm -f libgbseq.so .libgbseq.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libgbseq.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC gbseq__.o gbseq___.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lxser -lxutil -lxncbi -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgbseq.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libgbseq.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libgbseq.so
/bin/ln -f .gbseq.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.gbseq.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/gbseq'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/gbseq'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/entrez2'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/entrez2/entrez2_client.cpp -o entrez2_client.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/entrez2/entrez2_client_.cpp -o entrez2_client_.o
/bin/rm -f libentrez2cli.so .libentrez2cli.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libentrez2cli.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC entrez2_client.o entrez2_client_.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lentrez2 -lxconnect -lxser -lxutil -lxncbi -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrez2cli.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libentrez2cli.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libentrez2cli.so
/bin/ln -f .entrez2cli.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.entrez2cli.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/entrez2'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/entrez2'
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/eutils/api/einfo.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/eutils/api/einfo.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objtools/eutils/api/eutils.hpp:198:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
198 | auto_ptr<CConn_HttpStream> m_Stream;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/eutils/api/einfo.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/eutils/api/efetch.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/eutils/api/efetch.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objtools/eutils/api/eutils.hpp:198:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
198 | auto_ptr<CConn_HttpStream> m_Stream;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/eutils/api/efetch.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objtools/eutils/api/eutils.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objtools/eutils/api/eutils.hpp:198:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
198 | auto_ptr<CConn_HttpStream> m_Stream;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/eutils/api/eutils.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/eutils/api/efetch.cpp: In member function ‘virtual ncbi::CRef<uilist::CIdList> ncbi::CEFetch_Request::FetchIdList(int)’:
/<<PKGBUILDDIR>>/c++/src/objtools/eutils/api/efetch.cpp:132:12: warning: catching polymorphic type ‘class ncbi::CSerialException’ by value [-Wcatch-value=]
132 | catch (CSerialException) {
| ^~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/eutils/api/esearch.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/objtools/eutils/api/esearch.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objtools/eutils/api/eutils.hpp:198:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
198 | auto_ptr<CConn_HttpStream> m_Stream;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/eutils/api/esearch.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/biblio'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/biblio/biblio__.cpp -o biblio__.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/biblio/biblio___.cpp -o biblio___.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/biblio/citation_base.cpp -o citation_base.o
/bin/rm -f libbiblio.so .libbiblio.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libbiblio.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC biblio__.o biblio___.o citation_base.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lgeneral -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libbiblio.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libbiblio.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libbiblio.so
/bin/ln -f .biblio.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.biblio.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/biblio'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/biblio'
cd objects/medline/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=medline UNIX_PROJ="" sources= configurables=configurables.null
cd objects/medlars/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=medlars UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/medline'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/medlars'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/medline'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/medlars'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/medline'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/medline'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/medlars'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/medline'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/medlars'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/medlars'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objects/medline TMPL=medline -w -j4 --jobserver-auth=7,8 all
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objects/medlars TMPL=medlars -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/api'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/eutils/api/eutils.cpp -o eutils.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/eutils/api/efetch.cpp -o efetch.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/eutils/api/einfo.cpp -o einfo.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/eutils/api/esearch.cpp -o esearch.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/eutils/api/egquery.cpp -o egquery.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/eutils/api/epost.cpp -o epost.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=formatIn file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/medlars/Medlars_entry_.cpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/medlars/medlars___.cpp:2:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/eutils/api/egquery.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/objtools/eutils/api/egquery.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objtools/eutils/api/eutils.hpp:198:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
198 | auto_ptr<CConn_HttpStream> m_Stream;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/eutils/api/egquery.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/medline/DocRef_.cpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/medline/medline___.cpp:2:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/eutils/api/epost.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/objtools/eutils/api/epost.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objtools/eutils/api/eutils.hpp:198:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
198 | auto_ptr<CConn_HttpStream> m_Stream;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/eutils/api/epost.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/eutils/api/elink.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/objtools/eutils/api/elink.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objtools/eutils/api/eutils.hpp:198:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
198 | auto_ptr<CConn_HttpStream> m_Stream;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/eutils/api/elink.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/medlars'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/medlars/medlars__.cpp -o medlars__.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/medlars/medlars___.cpp -o medlars___.o
/bin/rm -f libmedlars.so .libmedlars.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libmedlars.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC medlars__.o medlars___.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lbiblio -lxser -lxutil -lxncbi -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmedlars.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libmedlars.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libmedlars.so
/bin/ln -f .medlars.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.medlars.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/medlars'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/medlars'
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/eutils/api/esummary.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/eutils/api/esummary.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objtools/eutils/api/eutils.hpp:198:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
198 | auto_ptr<CConn_HttpStream> m_Stream;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/eutils/api/esummary.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/eutils/api/espell.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/objtools/eutils/api/espell.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objtools/eutils/api/eutils.hpp:198:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
198 | auto_ptr<CConn_HttpStream> m_Stream;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/eutils/api/espell.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/medline'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/medline/medline__.cpp -o medline__.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/medline/medline___.cpp -o medline___.o
/bin/rm -f libmedline.so .libmedline.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libmedline.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC medline__.o medline___.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lbiblio -lgeneral -lxser -lxncbi -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmedline.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libmedline.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libmedline.so
/bin/ln -f .medline.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.medline.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/medline'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/medline'
cd objects/pub/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=pub UNIX_PROJ="" sources= configurables=configurables.null
cd objects/pubmed/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=pubmed UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/pub'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/pubmed'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/pub'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/pubmed'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/pub'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/pubmed'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/pub'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/pubmed'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/pub'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/pubmed'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objects/pub TMPL=pub -w -j4 --jobserver-auth=7,8 all
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objects/pubmed TMPL=pubmed -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/eutils/api/ehistory.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/objtools/eutils/api/ehistory.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objtools/eutils/api/eutils.hpp:198:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
198 | auto_ptr<CConn_HttpStream> m_Stream;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/eutils/api/ehistory.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/eutils/api/elink.cpp -o elink.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/eutils/api/esummary.cpp -o esummary.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/eutils/api/espell.cpp -o espell.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/eutils/api/ehistory.cpp -o ehistory.o
/bin/rm -f libeutils.so .libeutils.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libeutils.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC eutils.o efetch.o einfo.o esearch.o egquery.o epost.o elink.o esummary.o espell.o ehistory.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -leinfo -lesearch -legquery -lepost -lelink -lesummary -lespell -luilist -lehistory -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libeutils.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libeutils.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libeutils.so
/bin/ln -f .eutils.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.eutils.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/api'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/api'
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/pubmed/Pubmed_entry_.cpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/pubmed/pubmed___.cpp:2:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/pub/Pub_.cpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/pub/pub___.cpp:2:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/pubmed'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/pubmed/pubmed__.cpp -o pubmed__.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/pubmed/pubmed___.cpp -o pubmed___.o
/bin/rm -f libpubmed.so .libpubmed.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libpubmed.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC pubmed__.o pubmed___.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lmedline -lbiblio -lxser -lxutil -lxncbi -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpubmed.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libpubmed.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libpubmed.so
/bin/ln -f .pubmed.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.pubmed.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/pubmed'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/pubmed'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/pub'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/pub/pub__.cpp -o pub__.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/pub/pub___.cpp -o pub___.o
/bin/rm -f libpub.so .libpub.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libpub.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC pub__.o pub___.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lmedline -lbiblio -lxser -lxncbi -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpub.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libpub.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libpub.so
/bin/ln -f .pub.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.pub.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/pub'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/pub'
cd objects/seq/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=seq UNIX_PROJ="" sources= configurables=configurables.null
cd objects/mla/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=mla UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seq'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/mla'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seq'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/mla'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/mla'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seq'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seq'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/mla'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/mla'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seq'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objects/mla TMPL=mla -w -j4 --jobserver-auth=7,8 all
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objects/seq TMPL=seq -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/mla/Error_val_.cpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/mla/mla___.cpp:2:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/seq/../seqfeat/Gb_qual.cpp:45,
from /<<PKGBUILDDIR>>/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:15,
from seqfeat__.cpp:1:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/seqfeat/BinomialOrgName.hpp:44,
from /<<PKGBUILDDIR>>/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41,
from /<<PKGBUILDDIR>>/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objects/seq/../seqalign/seqalign__.cpp:9,
from seqalign__.cpp:1:
/<<PKGBUILDDIR>>/c++/src/objects/seq/../seqalign/Seq_align.cpp: In member function ‘void ncbi::objects::CSeq_align::RemapToLoc(ncbi::objects::CSeq_align_Base::TDim, const ncbi::objects::CSeq_loc&, bool)’:
/<<PKGBUILDDIR>>/c++/src/objects/seq/../seqalign/Seq_align.cpp:1382:41: warning: ‘void ncbi::objects::CDense_seg::RemapToLoc(ncbi::objects::CDense_seg_Base::TDim, const ncbi::objects::CSeq_loc&, bool)’ is deprecated [-Wdeprecated-declarations]
1382 | SetSegs().SetDenseg().RemapToLoc(row, dst_loc, ignore_strand);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objects/seq/../seqalign/seqalign__.cpp:3:
/<<PKGBUILDDIR>>/c++/src/objects/seq/../seqalign/Dense_seg.cpp:909:6: note: declared here
909 | void CDense_seg::RemapToLoc(TDim row, const CSeq_loc& loc,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objects/seq/../seqalign/Seq_align.cpp:1386:34: warning: ‘void ncbi::objects::CStd_seg::RemapToLoc(ncbi::objects::CStd_seg_Base::TDim, const ncbi::objects::CSeq_loc&, bool)’ is deprecated [-Wdeprecated-declarations]
1386 | (*std_it)->RemapToLoc(row, dst_loc, ignore_strand);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objects/seq/../seqalign/Seq_align.cpp:42:
/<<PKGBUILDDIR>>/c++/include/objects/seqalign/Std_seg.hpp:79:26: note: declared here
79 | NCBI_DEPRECATED void RemapToLoc(TDim row,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objects/seq/../seqalign/Seq_align.cpp:1391:40: warning: ‘void ncbi::objects::CSeq_align::RemapToLoc(ncbi::objects::CSeq_align_Base::TDim, const ncbi::objects::CSeq_loc&, bool)’ is deprecated [-Wdeprecated-declarations]
1391 | (*seq_align_it)->RemapToLoc(row, dst_loc, ignore_strand);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objects/seq/../seqalign/Seq_align.cpp:1365:6: note: declared here
1365 | void CSeq_align::RemapToLoc(TDim row,
| ^~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:19:
/<<PKGBUILDDIR>>/c++/src/objects/seq/../seqfeat/Genetic_code_table.cpp: In static member function ‘static void ncbi::objects::CGen_code_table::LoadTransTable(const std::string&, ncbi::ESerialDataFormat)’:
/<<PKGBUILDDIR>>/c++/src/objects/seq/../seqfeat/Genetic_code_table.cpp:379:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
379 | auto_ptr<CObjectIStream> ois(CObjectIStream::Open(path, format));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objects/seq/../seqfeat/Genetic_code_table.cpp: In constructor ‘ncbi::objects::CGen_code_table_imp::CGen_code_table_imp()’:
/<<PKGBUILDDIR>>/c++/src/objects/seq/../seqfeat/Genetic_code_table.cpp:452:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
452 | auto_ptr<CObjectIStream>
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:30:
/<<PKGBUILDDIR>>/c++/src/objects/seq/../seqfeat/PCRPrimerSeq.cpp: In static member function ‘static bool ncbi::objects::CPCRPrimerSeq::Fixi(std::string&)’:
/<<PKGBUILDDIR>>/c++/src/objects/seq/../seqfeat/PCRPrimerSeq.cpp:249:25: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, EOccurrence, ECase)’ is deprecated [-Wdeprecated-declarations]
249 | pos = NStr::Find(seq, "i", pos, NPOS, NStr::eFirst, NStr::eCase);
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:5344:11: note: declared here
5344 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern,
| ^~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:42:
/<<PKGBUILDDIR>>/c++/src/objects/seq/../seqfeat/RNA_ref.cpp: In function ‘ncbi::CTempString ncbi::objects::s_AaName(int)’:
/<<PKGBUILDDIR>>/c++/src/objects/seq/../seqfeat/RNA_ref.cpp:124:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘unsigned int’} [-Wsign-compare]
124 | if (idx > 0 && idx < ArraySize(sc_TrnaList)) {
| ~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/seq/../seqloc/Seq_id.cpp:47,
from /<<PKGBUILDDIR>>/c++/src/objects/seq/../seqloc/seqloc__.cpp:10,
from seqloc__.cpp:1:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/seqloc/Giimport_id_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/seqloc/Giimport_id.hpp:44,
from /<<PKGBUILDDIR>>/c++/src/objects/seq/../seqloc/Giimport_id.cpp:41,
from /<<PKGBUILDDIR>>/c++/src/objects/seq/../seqloc/seqloc__.cpp:2:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/mla'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/mla/mla__.cpp -o mla__.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/mla/mla___.cpp -o mla___.o
/bin/rm -f libmla.so .libmla.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libmla.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC mla__.o mla___.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lmedlars -lpub -lpubmed -lxser -lxutil -lxncbi -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmla.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libmla.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libmla.so
/bin/ln -f .mla.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.mla.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/mla'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/mla'
cd objects/mla/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=mlacli UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/mla'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/mla'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/mla'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/mla'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/mla'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objects/mla TMPL=mlacli -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/src/objects/seq/../seqloc/seqloc__.cpp:13:
/<<PKGBUILDDIR>>/c++/src/objects/seq/../seqloc/Seq_loc.cpp: In function ‘void ncbi::objects::x_MergeAndSort(CSeq_loc&, const CSeq_loc&, CSeq_loc::TOpFlags, ISynonymMapper&)’:
/<<PKGBUILDDIR>>/c++/src/objects/seq/../seqloc/Seq_loc.cpp:4648:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
4648 | auto_ptr<TIdToRangeMap> pid_map_minus(use_strand ?
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objects/seq/../seqloc/Seq_loc.cpp: In function ‘void ncbi::objects::x_SubAndSort(CSeq_loc&, const CSeq_loc&, const TFuzzMap&, const TFuzzMap&, const TFuzzMap&, const TFuzzMap&, TIdToRangeColl&, TIdToRangeColl&, ISynonymMapper&, ILengthGetter&, CSeq_loc::TOpFlags)’:
/<<PKGBUILDDIR>>/c++/src/objects/seq/../seqloc/Seq_loc.cpp:4933:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
4933 | auto_ptr<TIdToRangeMap> p_id_map_minus(use_strand ?
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objects/seq/../seqloc/Seq_loc.cpp: In member function ‘ncbi::CRef<ncbi::objects::CSeq_loc> ncbi::objects::CSeq_loc::Merge(TOpFlags, ncbi::objects::ISynonymMapper*) const’:
/<<PKGBUILDDIR>>/c++/src/objects/seq/../seqloc/Seq_loc.cpp:5040:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
5040 | auto_ptr<CDummySynonymMapper> p_mapper;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objects/seq/../seqloc/Seq_loc.cpp: In member function ‘ncbi::CRef<ncbi::objects::CSeq_loc> ncbi::objects::CSeq_loc::Add(const ncbi::objects::CSeq_loc&, TOpFlags, ncbi::objects::ISynonymMapper*) const’:
/<<PKGBUILDDIR>>/c++/src/objects/seq/../seqloc/Seq_loc.cpp:5064:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
5064 | auto_ptr<CDummySynonymMapper> p_mapper;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objects/seq/../seqloc/Seq_loc.cpp: In member function ‘ncbi::CRef<ncbi::objects::CSeq_loc> ncbi::objects::CSeq_loc::Subtract(const ncbi::objects::CSeq_loc&, TOpFlags, ncbi::objects::ISynonymMapper*, ncbi::objects::ILengthGetter*) const’:
/<<PKGBUILDDIR>>/c++/src/objects/seq/../seqloc/Seq_loc.cpp:5092:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
5092 | auto_ptr<CDummySynonymMapper> p_mapper;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objects/seq/../seqloc/Seq_loc.cpp:5097:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
5097 | auto_ptr<CDummyLengthGetter> p_getter;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objects/seq/../seqloc/Seq_loc.cpp:5108:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
5108 | auto_ptr<TIdToRangeColl> p_rg_coll_minus(use_strand ?
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objects/seq/../seqloc/Seq_loc.cpp: In member function ‘ncbi::CRef<ncbi::objects::CSeq_loc> ncbi::objects::CSeq_loc::Intersect(const ncbi::objects::CSeq_loc&, TOpFlags, ncbi::objects::ISynonymMapper*) const’:
/<<PKGBUILDDIR>>/c++/src/objects/seq/../seqloc/Seq_loc.cpp:5187:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
5187 | auto_ptr<CDummyLengthGetter> len_getter(new CDummyLengthGetter);
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:44:
/<<PKGBUILDDIR>>/c++/src/objects/seq/../seqfeat/SeqFeatData.cpp: In static member function ‘static const ncbi::objects::CFeatList* ncbi::objects::CSeqFeatData::GetFeatList()’:
/<<PKGBUILDDIR>>/c++/src/objects/seq/../seqfeat/SeqFeatData.cpp:3752:12: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
3752 | static auto_ptr<CFeatList> theFeatList;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objects/seq/../seqfeat/SeqFeatData.cpp: In static member function ‘static const ncbi::objects::CBondList* ncbi::objects::CSeqFeatData::GetBondList()’:
/<<PKGBUILDDIR>>/c++/src/objects/seq/../seqfeat/SeqFeatData.cpp:3766:12: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
3766 | static auto_ptr<CBondList> theBondList;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objects/seq/../seqfeat/SeqFeatData.cpp: In static member function ‘static const ncbi::objects::CSiteList* ncbi::objects::CSeqFeatData::GetSiteList()’:
/<<PKGBUILDDIR>>/c++/src/objects/seq/../seqfeat/SeqFeatData.cpp:3781:12: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
3781 | static auto_ptr<CSiteList> theSiteList;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:48:
/<<PKGBUILDDIR>>/c++/src/objects/seq/../seqfeat/SubSource.cpp: In static member function ‘static void ncbi::objects::CSubSource::IsCorrectDateFormat(const std::string&, bool&, bool&)’:
/<<PKGBUILDDIR>>/c++/src/objects/seq/../seqfeat/SubSource.cpp:464:14: warning: catching polymorphic type ‘class ncbi::CException’ by value [-Wcatch-value=]
464 | } catch (CException ) {
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objects/seq/../seqfeat/SubSource.cpp: In static member function ‘static size_t ncbi::objects::CSubSource::CheckDateFormat(const std::string&)’:
/<<PKGBUILDDIR>>/c++/src/objects/seq/../seqfeat/SubSource.cpp:486:22: warning: catching polymorphic type ‘class ncbi::CException’ by value [-Wcatch-value=]
486 | } catch (CException) {
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objects/seq/../seqfeat/SubSource.cpp:516:14: warning: catching polymorphic type ‘class ncbi::CException’ by value [-Wcatch-value=]
516 | } catch (CException) {
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objects/seq/../seqfeat/SubSource.cpp: In function ‘ncbi::objects::CCountries::EStateCleanup ncbi::objects::s_DoUSAStateCleanup(std::string&)’:
/<<PKGBUILDDIR>>/c++/src/objects/seq/../seqfeat/SubSource.cpp:4334:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
4334 | for ( int j = 0; j < components.size(); j++ ) {
| ~~^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objects/seq/../seqfeat/SubSource.cpp:4353:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
4353 | for ( int j = 0; j < components.size(); j++ ) {
| ~~^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objects/seq/../seqfeat/SubSource.cpp:4385:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
4385 | for ( int j = 0; j < components.size(); j++ ) {
| ~~^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objects/seq/../seqfeat/SubSource.cpp:4344:10: warning: variable ‘any_modified’ set but not used [-Wunused-but-set-variable]
4344 | bool any_modified = false;
| ^~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objects/seq/../seqfeat/SubSource.cpp:4348:13: warning: variable ‘first’ set but not used [-Wunused-but-set-variable]
4348 | string* first = 0;
| ^~~~~
/<<PKGBUILDDIR>>/c++/src/objects/seq/../seqfeat/SubSource.cpp:4349:13: warning: variable ‘last’ set but not used [-Wunused-but-set-variable]
4349 | string* last = 0;
| ^~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/mla/mla_client_.cpp:39:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seq'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/<<PKGBUILDDIR>>/c++/src/objects/seq -I/<<PKGBUILDDIR>>/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/seq/seq__.cpp -o seq__.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/<<PKGBUILDDIR>>/c++/src/objects/seq -I/<<PKGBUILDDIR>>/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include seqalign__.cpp -o seqalign__.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/<<PKGBUILDDIR>>/c++/src/objects/seq -I/<<PKGBUILDDIR>>/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include seqblock__.cpp -o seqblock__.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/<<PKGBUILDDIR>>/c++/src/objects/seq -I/<<PKGBUILDDIR>>/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include seqfeat__.cpp -o seqfeat__.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/<<PKGBUILDDIR>>/c++/src/objects/seq -I/<<PKGBUILDDIR>>/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include seqloc__.cpp -o seqloc__.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/<<PKGBUILDDIR>>/c++/src/objects/seq -I/<<PKGBUILDDIR>>/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFImake[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/mla'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/mla/mla_client.cpp -o mla_client.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/mla/mla_client_.cpp -o mla_client_.o
/bin/rm -f libmlacli.so .libmlacli.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libmlacli.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC mla_client.o mla_client_.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lmla -lxconnect -lxser -lxutil -lxncbi -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmlacli.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libmlacli.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libmlacli.so
/bin/ln -f .mlacli.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.mlacli.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/mla'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/mla'
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/seqtable/BVector_data_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/seqtable/BVector_data.hpp:44,
from /<<PKGBUILDDIR>>/c++/src/objects/seq/../seqtable/BVector_data.cpp:41,
from /<<PKGBUILDDIR>>/c++/src/objects/seq/../seqtable/seqtable__.cpp:2,
from seqtable__.cpp:1:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator<long long int>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<long long int>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/seq/Align_def_.cpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/seq/seq___.cpp:2:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
In file included from /usr/include/c++/12/map:60,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:45,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/usr/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const ncbi::objects::CSeq_id_Handle_Wrapper&>, std::tuple<>}; _Key = ncbi::objects::CSeq_id_Handle_Wrapper; _Val = std::pair<const ncbi::objects::CSeq_id_Handle_Wrapper, std::vector<ncbi::objects::CRangeWithFuzz> >; _KeyOfValue = std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle_Wrapper, std::vector<ncbi::objects::CRangeWithFuzz> > >; _Compare = std::less<ncbi::objects::CSeq_id_Handle_Wrapper>; _Alloc = std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle_Wrapper, std::vector<ncbi::objects::CRangeWithFuzz> > >]’:
/usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree<ncbi::objects::CSeq_id_Handle_Wrapper, std::pair<const ncbi::objects::CSeq_id_Handle_Wrapper, std::vector<ncbi::objects::CRangeWithFuzz> >, std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle_Wrapper, std::vector<ncbi::objects::CRangeWithFuzz> > >, std::less<ncbi::objects::CSeq_id_Handle_Wrapper>, std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle_Wrapper, std::vector<ncbi::objects::CRangeWithFuzz> > > >::const_iterator’ changed in GCC 7.1
2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const ncbi::objects::SSeq_loc_CI_RangeInfo&}; _Tp = ncbi::objects::SSeq_loc_CI_RangeInfo; _Alloc = std::allocator<ncbi::objects::SSeq_loc_CI_RangeInfo>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<ncbi::objects::SSeq_loc_CI_RangeInfo>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ncbi::objects::SSeq_loc_CI_RangeInfo; _Alloc = std::allocator<ncbi::objects::SSeq_loc_CI_RangeInfo>]’,
inlined from ‘void ncbi::objects::CSeq_loc_CI_Impl::x_ProcessPoint(const ncbi::objects::CSeq_point&, const ncbi::objects::CSeq_loc&)’ at /<<PKGBUILDDIR>>/c++/src/objects/seq/../seqloc/Seq_loc.cpp:1596:23:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::SSeq_loc_CI_RangeInfo*, std::vector<ncbi::objects::SSeq_loc_CI_RangeInfo> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ncbi::objects::SSeq_loc_CI_RangeInfo; _Alloc = std::allocator<ncbi::objects::SSeq_loc_CI_RangeInfo>]’,
inlined from ‘void ncbi::objects::CSeq_loc_CI_Impl::x_ProcessInterval(const ncbi::objects::CSeq_interval&, const ncbi::objects::CSeq_loc&)’ at /<<PKGBUILDDIR>>/c++/src/objects/seq/../seqloc/Seq_loc.cpp:1577:23:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::SSeq_loc_CI_RangeInfo*, std::vector<ncbi::objects::SSeq_loc_CI_RangeInfo> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {ncbi::objects::SSeq_loc_CI_RangeInfo}; _Tp = ncbi::objects::SSeq_loc_CI_RangeInfo; _Alloc = std::allocator<ncbi::objects::SSeq_loc_CI_RangeInfo>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<ncbi::objects::SSeq_loc_CI_RangeInfo>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ncbi::objects::SSeq_loc_CI_RangeInfo; _Alloc = std::allocator<ncbi::objects::SSeq_loc_CI_RangeInfo>]’,
inlined from ‘void ncbi::objects::CSeq_loc_CI_Impl::x_ProcessLocation(const ncbi::objects::CSeq_loc&)’ at /<<PKGBUILDDIR>>/c++/src/objects/seq/../seqloc/Seq_loc.cpp:1460:35:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::SSeq_loc_CI_RangeInfo*, std::vector<ncbi::objects::SSeq_loc_CI_RangeInfo> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ncbi::objects::SSeq_loc_CI_RangeInfo; _Alloc = std::allocator<ncbi::objects::SSeq_loc_CI_RangeInfo>]’,
inlined from ‘void ncbi::objects::CSeq_loc_CI_Impl::x_ProcessLocation(const ncbi::objects::CSeq_loc&)’ at /<<PKGBUILDDIR>>/c++/src/objects/seq/../seqloc/Seq_loc.cpp:1470:31:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::SSeq_loc_CI_RangeInfo*, std::vector<ncbi::objects::SSeq_loc_CI_RangeInfo> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ncbi::objects::SSeq_loc_CI_RangeInfo; _Alloc = std::allocator<ncbi::objects::SSeq_loc_CI_RangeInfo>]’,
inlined from ‘void ncbi::objects::CSeq_loc_CI_Impl::x_ProcessLocation(const ncbi::objects::CSeq_loc&)’ at /<<PKGBUILDDIR>>/c++/src/objects/seq/../seqloc/Seq_loc.cpp:1507:35:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::SSeq_loc_CI_RangeInfo*, std::vector<ncbi::objects::SSeq_loc_CI_RangeInfo> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_insert_rval(const_iterator, value_type&&) [with _Tp = ncbi::objects::SSeq_loc_CI_RangeInfo; _Alloc = std::allocator<ncbi::objects::SSeq_loc_CI_RangeInfo>]’,
inlined from ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, value_type&&) [with _Tp = ncbi::objects::SSeq_loc_CI_RangeInfo; _Alloc = std::allocator<ncbi::objects::SSeq_loc_CI_RangeInfo>]’ at /usr/include/c++/12/bits/stl_vector.h:1389:30,
inlined from ‘ncbi::objects::SSeq_loc_CI_RangeInfo& ncbi::objects::CSeq_loc_CI_Impl::InsertRange(size_t, ncbi::objects::CSeq_loc_Base::E_Choice)’ at /<<PKGBUILDDIR>>/c++/src/objects/seq/../seqloc/Seq_loc.cpp:1698:25:
/usr/include/c++/12/bits/vector.tcc:366:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::SSeq_loc_CI_RangeInfo*, std::vector<ncbi::objects::SSeq_loc_CI_RangeInfo> >’ changed in GCC 7.1
366 | _M_realloc_insert(begin() + __n, std::move(__v));
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘void ncbi::objects::CSeqTable_multi_data::ChangeToInt8()’ at /<<PKGBUILDDIR>>/c++/src/objects/seq/../seqtable/SeqTable_multi_data.cpp:1218:22:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void ncbi::objects::CSeqTable_multi_data::ChangeToReal_scaled(double, double)’ at /<<PKGBUILDDIR>>/c++/src/objects/seq/../seqtable/SeqTable_multi_data.cpp:985:26:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void ncbi::objects::CSeqTable_multi_data::ChangeToReal()’ at /<<PKGBUILDDIR>>/c++/src/objects/seq/../seqtable/SeqTable_multi_data.cpp:1236:22:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘void ncbi::objects::CSeqTable_multi_data::ChangeToInt_scaled(int, int)’ at /<<PKGBUILDDIR>>/c++/src/objects/seq/../seqtable/SeqTable_multi_data.cpp:1072:26:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/map:61:
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = ncbi::objects::CSeq_id_Handle_Wrapper; _Tp = std::vector<ncbi::objects::CRangeWithFuzz>; _Compare = std::less<ncbi::objects::CSeq_id_Handle_Wrapper>; _Alloc = std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle_Wrapper, std::vector<ncbi::objects::CRangeWithFuzz> > >]’,
inlined from ‘void ncbi::objects::x_MergeAndSort(CSeq_loc&, const CSeq_loc&, CSeq_loc::TOpFlags, ISynonymMapper&)’ at /<<PKGBUILDDIR>>/c++/src/objects/seq/../seqloc/Seq_loc.cpp:4663:29:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<ncbi::objects::CSeq_id_Handle_Wrapper, std::pair<const ncbi::objects::CSeq_id_Handle_Wrapper, std::vector<ncbi::objects::CRangeWithFuzz> >, std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle_Wrapper, std::vector<ncbi::objects::CRangeWithFuzz> > >, std::less<ncbi::objects::CSeq_id_Handle_Wrapper>, std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle_Wrapper, std::vector<ncbi::objects::CRangeWithFuzz> > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = ncbi::objects::CSeq_id_Handle_Wrapper; _Tp = std::vector<ncbi::objects::CRangeWithFuzz>; _Compare = std::less<ncbi::objects::CSeq_id_Handle_Wrapper>; _Alloc = std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle_Wrapper, std::vector<ncbi::objects::CRangeWithFuzz> > >]’,
inlined from ‘void ncbi::objects::x_MergeAndSort(CSeq_loc&, const CSeq_loc&, CSeq_loc::TOpFlags, ISynonymMapper&)’ at /<<PKGBUILDDIR>>/c++/src/objects/seq/../seqloc/Seq_loc.cpp:4674:28:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<ncbi::objects::CSeq_id_Handle_Wrapper, std::pair<const ncbi::objects::CSeq_id_Handle_Wrapper, std::vector<ncbi::objects::CRangeWithFuzz> >, std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle_Wrapper, std::vector<ncbi::objects::CRangeWithFuzz> > >, std::less<ncbi::objects::CSeq_id_Handle_Wrapper>, std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle_Wrapper, std::vector<ncbi::objects::CRangeWithFuzz> > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = ncbi::objects::CSeq_id_Handle_Wrapper; _Tp = std::vector<ncbi::objects::CRangeWithFuzz>; _Compare = std::less<ncbi::objects::CSeq_id_Handle_Wrapper>; _Alloc = std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle_Wrapper, std::vector<ncbi::objects::CRangeWithFuzz> > >]’,
inlined from ‘void ncbi::objects::x_SubAndSort(CSeq_loc&, const CSeq_loc&, const TFuzzMap&, const TFuzzMap&, const TFuzzMap&, const TFuzzMap&, TIdToRangeColl&, TIdToRangeColl&, ISynonymMapper&, ILengthGetter&, CSeq_loc::TOpFlags)’ at /<<PKGBUILDDIR>>/c++/src/objects/seq/../seqloc/Seq_loc.cpp:4955:29,
inlined from ‘ncbi::CRef<ncbi::objects::CSeq_loc> ncbi::objects::CSeq_loc::Subtract(const ncbi::objects::CSeq_loc&, TOpFlags, ncbi::objects::ISynonymMapper*, ncbi::objects::ILengthGetter*) const’ at /<<PKGBUILDDIR>>/c++/src/objects/seq/../seqloc/Seq_loc.cpp:5169:21:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<ncbi::objects::CSeq_id_Handle_Wrapper, std::pair<const ncbi::objects::CSeq_id_Handle_Wrapper, std::vector<ncbi::objects::CRangeWithFuzz> >, std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle_Wrapper, std::vector<ncbi::objects::CRangeWithFuzz> > >, std::less<ncbi::objects::CSeq_id_Handle_Wrapper>, std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle_Wrapper, std::vector<ncbi::objects::CRangeWithFuzz> > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = ncbi::objects::CSeq_id_Handle_Wrapper; _Tp = std::vector<ncbi::objects::CRangeWithFuzz>; _Compare = std::less<ncbi::objects::CSeq_id_Handle_Wrapper>; _Alloc = std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle_Wrapper, std::vector<ncbi::objects::CRangeWithFuzz> > >]’,
inlined from ‘void ncbi::objects::x_SubAndSort(CSeq_loc&, const CSeq_loc&, const TFuzzMap&, const TFuzzMap&, const TFuzzMap&, const TFuzzMap&, TIdToRangeColl&, TIdToRangeColl&, ISynonymMapper&, ILengthGetter&, CSeq_loc::TOpFlags)’ at /<<PKGBUILDDIR>>/c++/src/objects/seq/../seqloc/Seq_loc.cpp:4955:48,
inlined from ‘ncbi::CRef<ncbi::objects::CSeq_loc> ncbi::objects::CSeq_loc::Subtract(const ncbi::objects::CSeq_loc&, TOpFlags, ncbi::objects::ISynonymMapper*, ncbi::objects::ILengthGetter*) const’ at /<<PKGBUILDDIR>>/c++/src/objects/seq/../seqloc/Seq_loc.cpp:5169:21:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<ncbi::objects::CSeq_id_Handle_Wrapper, std::pair<const ncbi::objects::CSeq_id_Handle_Wrapper, std::vector<ncbi::objects::CRangeWithFuzz> >, std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle_Wrapper, std::vector<ncbi::objects::CRangeWithFuzz> > >, std::less<ncbi::objects::CSeq_id_Handle_Wrapper>, std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle_Wrapper, std::vector<ncbi::objects::CRangeWithFuzz> > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘std::string ncbi::objects::s_NormalizeTokens.constprop(std::vector<std::__cxx11::basic_string<char> >&, std::vector<double>&, std::vector<std::__cxx11::basic_string<char> >&, std::vector<int>&, std::vector<std::__cxx11::basic_string<char> >&, std::vector<std::__cxx11::basic_string<char> >&)’ at /<<PKGBUILDDIR>>/c++/src/objects/seq/../seqfeat/SubSource.cpp:1384:30:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘std::string ncbi::objects::s_NormalizeTokens.constprop(std::vector<std::__cxx11::basic_string<char> >&, std::vector<double>&, std::vector<std::__cxx11::basic_string<char> >&, std::vector<int>&, std::vector<std::__cxx11::basic_string<char> >&, std::vector<std::__cxx11::basic_string<char> >&)’ at /<<PKGBUILDDIR>>/c++/src/objects/seq/../seqfeat/SubSource.cpp:1401:34:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘std::string ncbi::objects::s_NormalizeTokens.constprop(std::vector<std::__cxx11::basic_string<char> >&, std::vector<double>&, std::vector<std::__cxx11::basic_string<char> >&, std::vector<int>&, std::vector<std::__cxx11::basic_string<char> >&, std::vector<std::__cxx11::basic_string<char> >&)’ at /<<PKGBUILDDIR>>/c++/src/objects/seq/../seqfeat/SubSource.cpp:1405:34:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘std::string ncbi::objects::s_NormalizeTokens.constprop(std::vector<std::__cxx11::basic_string<char> >&, std::vector<double>&, std::vector<std::__cxx11::basic_string<char> >&, std::vector<int>&, std::vector<std::__cxx11::basic_string<char> >&, std::vector<std::__cxx11::basic_string<char> >&)’ at /<<PKGBUILDDIR>>/c++/src/objects/seq/../seqfeat/SubSource.cpp:1409:34:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/seq/../seqalign/Dense_diag_.cpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/seq/../seqalign/seqalign___.cpp:2,
from seqalign___.cpp:1:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/seq/../seqblock/EMBL_block_.cpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/seq/../seqblock/seqblock___.cpp:2,
from seqblock___.cpp:1:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/seq/../seqfeat/BinomialOrgName_.cpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/seq/../seqfeat/seqfeat___.cpp:2,
from seqfeat___.cpp:1:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
LE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include seqres__.cpp -o seqres__.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/<<PKGBUILDDIR>>/c++/src/objects/seq -I/<<PKGBUILDDIR>>/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include seqtable__.cpp -o seqtable__.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/<<PKGBUILDDIR>>/c++/src/objects/seq -I/<<PKGBUILDDIR>>/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/seq/seq___.cpp -o seq___.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/<<PKGBUILDDIR>>/c++/src/objects/seq -I/<<PKGBUILDDIR>>/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include seqalign___.cpp -o seqalign___.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/<<PKGBUILDDIR>>/c++/src/objects/seq -I/<<PKGBUILDDIR>>/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include seqblock___.cpp -o seqblock___.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/<<PKGBUILDDIR>>/c++/src/objects/seq -I/<<PKGBUILDDIR>>/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include seqfeat___.cpp -o seqfeat___.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/<<PKGBUILDDIR>>/c++/src/objeIn file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/seq/../seqloc/Giimport_id_.cpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/seq/../seqloc/seqloc___.cpp:2,
from seqloc___.cpp:1:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/seq/../seqres/Byte_graph_.cpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/seq/../seqres/seqres___.cpp:2,
from seqres___.cpp:1:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
In file included from /usr/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘static void* ncbi::CStlClassInfoFunctions<Container>::AddElement(const ncbi::CContainerTypeInfo*, ncbi::TObjectPtr, ncbi::TConstObjectPtr, ncbi::ESerialRecursionMode) [with Container = std::vector<double>]’ at /<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:239:36:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘static void* ncbi::CStlClassInfoFunctions<Container>::AddElement(const ncbi::CContainerTypeInfo*, ncbi::TObjectPtr, ncbi::TConstObjectPtr, ncbi::ESerialRecursionMode) [with Container = std::vector<double>]’ at /<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:242:36:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘static void* ncbi::CStlClassInfoFunctions<Container>::AddElementIn(const ncbi::CContainerTypeInfo*, ncbi::TObjectPtr, ncbi::CObjectIStream&) [with Container = std::vector<double>]’ at /<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:254:32:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/seq/../seqtable/BVector_data_.cpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/seq/../seqtable/seqtable___.cpp:2,
from seqtable___.cpp:1:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objects/seq/seqport_util.cpp: In member function ‘ncbi::CRef<ncbi::objects::CSeq_code_set> ncbi::objects::CSeqportUtil_implementation::Init()’:
/<<PKGBUILDDIR>>/c++/src/objects/seq/seqport_util.cpp:1307:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1307 | auto_ptr<CObjectIStream>
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/objects/seq/seqport_util.hpp:34,
from /<<PKGBUILDDIR>>/c++/src/objects/seq/seqport_util.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objects/seq/seqport_util.cpp: In member function ‘ncbi::TSeqPos ncbi::objects::CSeqportUtil_implementation::MapIupacnaToNcbi2na(const ncbi::objects::CSeq_data&, ncbi::objects::CSeq_data*, ncbi::TSeqPos, ncbi::TSeqPos, bool, ncbi::CRandom::TValue, ncbi::TSeqPos, ncbi::TSeqPos*, std::vector<unsigned int>*) const’:
/<<PKGBUILDDIR>>/c++/src/objects/seq/seqport_util.cpp:2923:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
2923 | auto_ptr<CAmbiguityContext> amb_context(NULL);
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objects/seq/seqport_util.cpp: In member function ‘ncbi::TSeqPos ncbi::objects::CSeqportUtil_implementation::MapNcbi4naToNcbi2na(const ncbi::objects::CSeq_data&, ncbi::objects::CSeq_data*, ncbi::TSeqPos, ncbi::TSeqPos, bool, ncbi::CRandom::TValue, ncbi::TSeqPos, ncbi::TSeqPos*, std::vector<unsigned int>*) const’:
/<<PKGBUILDDIR>>/c++/src/objects/seq/seqport_util.cpp:3228:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
3228 | auto_ptr<CAmbiguityContext> amb_context(NULL);
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objects/seq/seq_id_tree.cpp: In member function ‘virtual void ncbi::objects::CSeq_id_Giim_Tree::FindMatchStr(const std::string&, ncbi::objects::CSeq_id_Which_Tree::TSeq_id_MatchList&) const’:
/<<PKGBUILDDIR>>/c++/src/objects/seq/seq_id_tree.cpp:2871:12: warning: catching polymorphic type ‘class ncbi::CStringException’ by value [-Wcatch-value=]
2871 | catch (CStringException) {
| ^~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator<long long int>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<long long int>::iterator’ changed in GCC 7.1
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
In file included from /usr/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘static void* ncbi::CStlClassInfoFunctions<Container>::AddElement(const ncbi::CContainerTypeInfo*, ncbi::TObjectPtr, ncbi::TConstObjectPtr, ncbi::ESerialRecursionMode) [with Container = std::vector<double>]’ at /<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:239:36:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘static void* ncbi::CStlClassInfoFunctions<Container>::AddElement(const ncbi::CContainerTypeInfo*, ncbi::TObjectPtr, ncbi::TConstObjectPtr, ncbi::ESerialRecursionMode) [with Container = std::vector<double>]’ at /<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:242:36:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘static void* ncbi::CStlClassInfoFunctions<Container>::AddElementIn(const ncbi::CContainerTypeInfo*, ncbi::TObjectPtr, ncbi::CObjectIStream&) [with Container = std::vector<double>]’ at /<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:254:32:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<long long int>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘static void* ncbi::CStlClassInfoFunctions<Container>::AddElement(const ncbi::CContainerTypeInfo*, ncbi::TObjectPtr, ncbi::TConstObjectPtr, ncbi::ESerialRecursionMode) [with Container = std::vector<long long int>]’ at /<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:239:36:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘static void* ncbi::CStlClassInfoFunctions<Container>::AddElement(const ncbi::CContainerTypeInfo*, ncbi::TObjectPtr, ncbi::TConstObjectPtr, ncbi::ESerialRecursionMode) [with Container = std::vector<long long int>]’ at /<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:242:36:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘static void* ncbi::CStlClassInfoFunctions<Container>::AddElementIn(const ncbi::CContainerTypeInfo*, ncbi::TObjectPtr, ncbi::CObjectIStream&) [with Container = std::vector<long long int>]’ at /<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:254:32:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cts/seq -I/<<PKGBUILDDIR>>/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include seqloc___.cpp -o seqloc___.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/<<PKGBUILDDIR>>/c++/src/objects/seq -I/<<PKGBUILDDIR>>/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include seqres___.cpp -o seqres___.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/<<PKGBUILDDIR>>/c++/src/objects/seq -I/<<PKGBUILDDIR>>/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include seqtable___.cpp -o seqtable___.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/<<PKGBUILDDIR>>/c++/src/objects/seq -I/<<PKGBUILDDIR>>/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/seq/seqport_util.cpp -o seqport_util.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/<<PKGBUILDDIR>>/c++/src/objects/seq -I/<<PKGBUILDDIR>>/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/seq/seq_id_tree.cpp -o seq_id_tree.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/<<PKGBUILDDIR>>/c++/src/objects/seq -I/<<PKGBUILDDIR>>/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/seq/seq_id_handle.cpp -o seq_id_handle.o
/usr/bin/g++ -std=gnu++/<<PKGBUILDDIR>>/c++/src/objects/seq/seq_align_mapper_base.cpp: In member function ‘void ncbi::objects::CSeq_align_Mapper_Base::x_GetDstStd(ncbi::CRef<ncbi::objects::CSeq_align>&) const’:
/<<PKGBUILDDIR>>/c++/src/objects/seq/seq_align_mapper_base.cpp:1505:32: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
1505 | if ( row_n == p_row ) {
| ~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objects/seq/seq_align_mapper_base.cpp: In member function ‘void ncbi::objects::CSeq_align_Mapper_Base::x_GetDstDisc(ncbi::CRef<ncbi::objects::CSeq_align>&) const’:
/<<PKGBUILDDIR>>/c++/src/objects/seq/seq_align_mapper_base.cpp:1651:16: warning: catching polymorphic type ‘class ncbi::objects::CAnnotMapperException’ by value [-Wcatch-value=]
1651 | catch (CAnnotMapperException) {
| ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objects/seq/seq_align_mapper_base.cpp: In member function ‘virtual ncbi::objects::CSeq_align_Mapper_Base* ncbi::objects::CSeq_align_Mapper_Base::CreateSubAlign(const ncbi::objects::CSpliced_seg&, const ncbi::objects::CSpliced_exon&)’:
/<<PKGBUILDDIR>>/c++/src/objects/seq/seq_align_mapper_base.cpp:3064:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
3064 | auto_ptr<CSeq_align_Mapper_Base> sub(
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/seqloc/Seq_id_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/seqloc/Seq_id.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objects/seq/seq_id_handle.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objects/seq/seq_align_mapper_base.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/objects/seq/seq_align_mapper_base.cpp:34:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/<<PKGBUILDDIR>>/c++/src/objects/seq -I/<<PKGBUILDDIR>>/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/seq/seq_id_mapper.cpp -o seq_id_mapper.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/<<PKGBUILDDIR>>/c++/src/objects/seq -I/<<PKGBUILDDIR>>/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/seq/seq_loc_mapper_base.cpp -o seq_loc_mapper_base.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/<<PKGBUILDDIR>>/c++/src/objects/seq -I/<<PKGBUILDDIR>>/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/seq/seq_align_mapper_base.cpp -o seq_align_mapper_base.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/<<PKGBUILDDIR>>/c++/src/objects/seq -I/<<PKGBUILDDIR>>/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/seq/seqlocinfo.cpp -o seqlocinfo.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/<<PKGBUILDDIR>>/c++/src/objects/seq -I/<<PKGBUILDDIR>>/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/seq/so_map.cpp -o so_map.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/bui/<<PKGBUILDDIR>>/c++/src/objects/seq/seq_loc_reverse_complementer.cpp: In function ‘ncbi::objects::CSeq_interval* ncbi::objects::s_SeqIntRevCmp(const CSeq_interval&)’:
/<<PKGBUILDDIR>>/c++/src/objects/seq/seq_loc_reverse_complementer.cpp:60:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
60 | auto_ptr<CSeq_interval> rev_int(new CSeq_interval);
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/seqloc/Seq_loc_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/seqloc/Seq_loc.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/objects/seq/seq_loc_reverse_complementer.hpp:35,
from /<<PKGBUILDDIR>>/c++/src/objects/seq/seq_loc_reverse_complementer.cpp:35:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objects/seq/seq_loc_reverse_complementer.cpp: In function ‘ncbi::objects::CSeq_point* ncbi::objects::s_SeqPntRevCmp(const CSeq_point&)’:
/<<PKGBUILDDIR>>/c++/src/objects/seq/seq_loc_reverse_complementer.cpp:72:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
72 | auto_ptr<CSeq_point> rev_pnt(new CSeq_point);
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objects/seq/seq_loc_reverse_complementer.cpp: In function ‘ncbi::objects::CSeq_loc* ncbi::objects::GetReverseComplement(const CSeq_loc&, CReverseComplementHelper*)’:
/<<PKGBUILDDIR>>/c++/src/objects/seq/seq_loc_reverse_complementer.cpp:86:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
86 | auto_ptr<CSeq_loc> rev_loc( new CSeq_loc );
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
ld/ncbi-blast+-iztKfv/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/<<PKGBUILDDIR>>/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/seq/seq_loc_from_string.cpp -o seq_loc_from_string.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/<<PKGBUILDDIR>>/c++/src/objects/seq -I/<<PKGBUILDDIR>>/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/seq/seq_loc_reverse_complementer.cpp -o seq_loc_reverse_complementer.o
/bin/rm -f libseq.so .libseq.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libseq.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC seq__.o seqalign__.o seqblock__.o seqfeat__.o seqloc__.o seqres__.o seqtable__.o seq___.o seqalign___.o seqblock___.o seqfeat___.o seqloc___.o seqres___.o seqtable___.o seqport_util.o seq_id_tree.o seq_id_handle.o seq_id_mapper.o seq_loc_mapper_base.o seq_align_mapper_base.o seqlocinfo.o so_map.o seq_loc_from_string.o seq_loc_reverse_complementer.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lseqcode -lpub -lbiblio -lgeneral -lxser -lsequtil -lxutil -lxncbi -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseq.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libseq.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libseq.so
/bin/ln -f .seq.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.seq.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seq'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seq'
cd objects/seqset/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=seqset UNIX_PROJ="" sources= configurables=configurables.null
cd objects/blastdb/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blastdb UNIX_PROJ="" sources= configurables=configurables.null
cd objects/genomecoll/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=genome_collection UNIX_PROJ="" sources= configurables=configurables.null
cd objects/variation/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=variation UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seqset'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blastdb'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/genomecoll'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/variation'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seqset'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blastdb'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/genomecoll'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/variation'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blastdb'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seqset'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/genomecoll'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/variation'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blastdb'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seqset'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/genomecoll'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/variation'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blastdb'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/variation'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seqset'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/genomecoll'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objects/seqset TMPL=seqset -w -j4 --jobserver-auth=7,8 all
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objects/blastdb TMPL=blastdb -w -j4 --jobserver-auth=7,8 all
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objects/variation TMPL=variation -w -j4 --jobserver-auth=7,8 all
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objects/genomecoll TMPL=genome_collection -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/seqset/Bioseq_set_.cpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/seqset/seqset___.cpp:2:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/blastdb/Blast_db_mask_info_.cpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/blastdb/blastdb___.cpp:2:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/variation/VariantPlacement_.cpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/variation/variation___.cpp:2:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/genomecoll/GC_Assemblies_.cpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/genomecoll/genome_collection___.cpp:2:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objects/seqset/gb_release_file.cpp:68:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
68 | auto_ptr<CObjectIStream> m_In;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objects/seqset/gb_release_file.hpp:34,
from /<<PKGBUILDDIR>>/c++/src/objects/seqset/gb_release_file.cpp:32:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blastdb'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/blastdb/blastdb__.cpp -o blastdb__.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/blastdb/blastdb___.cpp -o blastdb___.o
/bin/rm -f libblastdb.so .libblastdb.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libblastdb.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC blastdb__.o blastdb___.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lseq -lxser -lxncbi -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libblastdb.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libblastdb.so
/bin/ln -f .blastdb.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.blastdb.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blastdb'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blastdb'
cd objects/taxon1/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=taxon1 UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/taxon1'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/taxon1'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/taxon1'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/taxon1'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/taxon1'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objects/taxon1 TMPL=taxon1 -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seqset'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/seqset/seqset__.cpp -o seqset__.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/seqset/seqset___.cpp -o seqset___.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/seqset/gb_release_file.cpp -o gb_release_file.o
/bin/rm -f libseqset.so .libseqset.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libseqset.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC seqset__.o seqset___.o gb_release_file.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lseq -lseqcode -lsequtil -lxser -lxncbi -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqset.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libseqset.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libseqset.so
/bin/ln -f .seqset.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.seqset.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seqset'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seqset'
cd objects/taxon3/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=taxon3 UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/taxon3'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/taxon3'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/taxon3'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/taxon3'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/taxon3'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objects/taxon3 TMPL=taxon3 -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/taxon1/Taxon1_data_.cpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/taxon1/taxon1___.cpp:2:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/variation'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/variation/variation__.cpp -o variation__.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/variation/variation___.cpp -o variation___.o
/bin/rm -f libvariation.so .libvariation.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libvariation.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC variation__.o variation___.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lseq -lxser -lxutil -lxncbi -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvariation.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libvariation.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libvariation.so
/bin/ln -f .variation.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.variation.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/variation'
/<<PKGBUILDDIR>>/c++/src/objects/taxon1/taxon1.cpp: In member function ‘bool ncbi::objects::CTaxon1::Init(const STimeout*, unsigned int, unsigned int)’:
/<<PKGBUILDDIR>>/c++/src/objects/taxon1/taxon1.cpp:141:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
141 | auto_ptr<CConn_ServiceStream> pServer;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/objects/taxon1/taxon1.cpp:34:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objects/taxon1/taxon1.cpp:142:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
142 | auto_ptr<CObjectOStream> pOut;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objects/taxon1/taxon1.cpp:143:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
143 | auto_ptr<CObjectIStream> pIn;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/variation'
cd objects/scoremat/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=scoremat UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/scoremat'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
/<<PKGBUILDDIR>>/c++/src/objects/taxon1/cache.cpp: In member function ‘void ncbi::objects::CDomainStorage::AddField(int, int, const std::string&)’:
/<<PKGBUILDDIR>>/c++/src/objects/taxon1/cache.cpp:787:24: warning: comparison of integer expressions of different signedness: ‘std::vector<int>::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
787 | if( m_types.size() <= field_no ) {
| ~~~~~~~~~~~~~~~^~~~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/scoremat'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/scoremat'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/scoremat'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/scoremat'
/<<PKGBUILDDIR>>/c++/src/objects/taxon1/taxon1.cpp: In member function ‘bool ncbi::objects::CTaxon1::SendRequest(ncbi::objects::CTaxon1_req&, ncbi::objects::CTaxon1_resp&, bool)’:
/<<PKGBUILDDIR>>/c++/src/objects/taxon1/taxon1.cpp:1491:17: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1491 | auto_ptr<CObjectOStream> pOut;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objects/taxon1/taxon1.cpp:1492:17: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1492 | auto_ptr<CObjectIStream> pIn;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objects/taxon1/taxon1.cpp:1493:17: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1493 | auto_ptr<CConn_ServiceStream>
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objects/scoremat TMPL=scoremat -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/genomecoll'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/genomecoll/genome_collection__.cpp -o genome_collection__.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/genomecoll/genome_collection___.cpp -o genome_collection___.o
/bin/rm -f libgenome_collection.so .libgenome_collection.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libgenome_collection.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC genome_collection__.o genome_collection___.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lseq -lgeneral -lxser -lxncbi -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgenome_collection.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libgenome_collection.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libgenome_collection.so
/bin/ln -f .genome_collection.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.genome_collection.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/genomecoll'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/genomecoll'
cd objects/seqedit/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=seqedit UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seqedit'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seqedit'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seqedit'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seqedit'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seqedit'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objects/seqedit TMPL=seqedit -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/taxon3/SequenceOfInt_.cpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/taxon3/taxon3___.cpp:2:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objects/taxon3/taxon3.cpp: In member function ‘virtual ncbi::CRef<ncbi::objects::CTaxon3_reply> ncbi::objects::CTaxon3::SendRequest(const ncbi::objects::CTaxon3_request&)’:
/<<PKGBUILDDIR>>/c++/src/objects/taxon3/taxon3.cpp:116:25: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
116 | auto_ptr<CObjectOStream> pOut;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/objects/taxon3/taxon3.cpp:34:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objects/taxon3/taxon3.cpp:117:25: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
117 | auto_ptr<CObjectIStream> pIn;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objects/taxon3/taxon3.cpp:118:25: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
118 | auto_ptr<CConn_ServiceStream>
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/scoremat/BlockProperty_.cpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/scoremat/scoremat___.cpp:2:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/seqedit/SeqEdit_Cmd_.cpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/seqedit/seqedit___.cpp:2:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/taxon1'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/taxon1/taxon1__.cpp -o taxon1__.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/taxon1/taxon1___.cpp -o taxon1___.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/taxon1/taxon1.cpp -o taxon1.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/taxon1/cache.cpp -o cache.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/taxon1/utils.cpp -o utils.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/taxon1/ctreecont.cpp -o ctreecont.o
/bin/rm -f libtaxon1.so .libtaxon1.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libtaxon1.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--amake[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/taxon3'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/taxon3/taxon3__.cpp -o taxon3__.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/taxon3/taxon3___.cpp -o taxon3___.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/taxon3/taxon3.cpp -o taxon3.o
/bin/rm -f libtaxon3.so .libtaxon3.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libtaxon3.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC taxon3__.o taxon3___.o taxon3.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lxconnect -lseq -lxser -lxutil -lxncbi -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon3.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libtaxon3.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libtaxon3.so
/bin/ln -f .taxon3.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.taxon3.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/taxon3'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/taxon3'
cd objects/seqsplit/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=seqsplit UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seqsplit'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seqsplit'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seqsplit'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seqsplit'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seqsplit'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objects/seqsplit TMPL=seqsplit -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
s-needed -gdwarf-3 -O2 -fPIC taxon1__.o taxon1___.o taxon1.o cache.o utils.o ctreecont.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lxconnect -lseq -lxser -lxutil -lxncbi -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon1.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libtaxon1.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libtaxon1.so
/bin/ln -f .taxon1.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.taxon1.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/taxon1'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/taxon1'
cd objects/submit/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=submit UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/submit'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/submit'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/submit'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/submit'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/submit'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objects/submit TMPL=submit -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/scoremat'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/scoremat/scoremat__.cpp -o scoremat__.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/scoremat/scoremat___.cpp -o scoremat___.o
/bin/rm -f libscoremat.so .libscoremat.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libscoremat.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC scoremat__.o scoremat___.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lseqset -lseq -lgeneral -lxser -lxncbi -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libscoremat.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libscoremat.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libscoremat.so
/bin/ln -f .scoremat.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.scoremat.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/scoremat'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/scoremat'
cd objects/id1/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=id1 UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/id1'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/id1'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/id1'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/id1'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/id1'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objects/id1 TMPL=id1 -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/seqsplit/ID2S_Bioseq_Ids_.cpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/seqsplit/seqsplit___.cpp:2:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/submit/Contact_info_.cpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/submit/submit___.cpp:2:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/id1/Entry_complexities_.cpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/id1/id1___.cpp:2:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seqedit'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/seqedit/seqedit__.cpp -o seqedit__.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/seqedit/seqedit___.cpp -o seqedit___.o
/bin/rm -f libseqedit.so .libseqedit.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libseqedit.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC seqedit__.o seqedit___.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lseqset -lseq -lgeneral -lxser -lxncbi -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqedit.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libseqedit.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libseqedit.so
/bin/ln -f .seqedit.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.seqedit.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seqedit'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seqedit'
cd objects/blast/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blast UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blast'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blast'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blast'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blast'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blast'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objects/blast TMPL=blast -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/submit'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/submit/submit__.cpp -o submit__.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/submit/submit___.cpp -o submit___.o
/bin/rm -f libsubmit.so .libsubmit.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libsubmit.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC submit__.o submit___.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lseqset -lseq -lbiblio -lgeneral -lxser -lxncbi -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsubmit.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libsubmit.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libsubmit.so
/bin/ln -f .submit.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.submit.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/submit'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/submit'
cd objtools/readers/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xobjread UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/readers'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/readers'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/readers'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/readers'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/readers'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objtools/readers TMPL=xobjread -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/id1'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/id1/id1__.cpp -o id1__.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/id1/id1___.cpp -o id1___.o
/bin/rm -f libid1.so .libid1.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libid1.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC id1__.o id1___.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lseqset -lseq -lxser -lxncbi -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid1.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libid1.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libid1.so
/bin/ln -f .id1.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.id1.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/id1'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/id1'
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/blast/Blas_get_searc_resul_reply_.cpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/blast/blast___.cpp:2:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/readers'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/objtools/readers/reader_message.cpp -o reader_message.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/objtools/readers/reader_listener.cpp -o reader_listener.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/objtools/readers/reader_message_handler.cpp -o reader_message_handler.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/objtools/readers/read_util.cpp -o read_util.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/objtools/readers/format_guess_ex.cpp -o format_guess_ex.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/objtools/readers/seqid_validate.cpp -o seqid_valIn file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/objtools/readers/format_guess_ex.cpp:36:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/src/objtools/readers/seqid_validate.cpp:34:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/objtools/readers/seqid_validate.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/agp_util.hpp:46,
from /<<PKGBUILDDIR>>/c++/src/objtools/readers/acc_pattern.cpp:43:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seqsplit'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/seqsplit/seqsplit__.cpp -o seqsplit__.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/seqsplit/seqsplit___.cpp -o seqsplit___.o
/bin/rm -f libseqsplit.so .libseqsplit.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libseqsplit.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC seqsplit__.o seqsplit___.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lseqset -lseq -lxser -lxncbi -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqsplit.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libseqsplit.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libseqsplit.so
/bin/ln -f .seqsplit.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.seqsplit.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seqsplit'
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘std::map<std::__cxx11::basic_string<char>, ncbi::CPatternStats*>::iterator ncbi::CAccPatternCounter::AddName(const std::string&, TDoubleVec*)’ at /<<PKGBUILDDIR>>/c++/src/objtools/readers/acc_pattern.cpp:229:30:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seqsplit'
cd objmgr/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=objmgr UNIX_PROJ="" sources= configurables=configurables.null
cd objects/id2/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=id2 UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objmgr'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/id2'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/src/objtools/readers/format_guess_ex.cpp:51:
/<<PKGBUILDDIR>>/c++/include/objtools/readers/format_guess_ex.hpp:140:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
140 | auto_ptr<CFormatGuess> m_Guesser;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/readers/format_guess_ex.cpp:35:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/id2'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/id2'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objmgr'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/id2'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/id2'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objmgr'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objmgr'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objmgr'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objects/id2 TMPL=id2 -w -j4 --jobserver-auth=7,8 all
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objmgr TMPL=objmgr -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/mod_reader.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/objtools/readers/format_guess_ex.cpp:66:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/readers/format_guess_ex.cpp: In member function ‘bool ncbi::CFormatGuessEx::x_TryRmo()’:
/<<PKGBUILDDIR>>/c++/src/objtools/readers/format_guess_ex.cpp:242:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
242 | auto_ptr<CRepeatMaskerReader> reader(new CRepeatMaskerReader(Flags));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/readers/agp_read.cpp: In function ‘ncbi::CRef<ncbi::objects::CBioseq_set> ncbi::AgpRead(CNcbiIstream&, EAgpRead_IdRule, bool, std::vector<std::vector<char> >*)’:
/<<PKGBUILDDIR>>/c++/src/objtools/readers/agp_read.cpp:58:12: warning: ‘void ncbi::AgpRead(CNcbiIstream&, std::vector<CRef<objects::CSeq_entry> >&, EAgpRead_IdRule, bool, std::vector<std::vector<char> >*)’ is deprecated [-Wdeprecated-declarations]
58 | AgpRead(is, entries, component_id_rule, set_gap_data, component_types);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objtools/readers/agp_read.cpp:33:
/<<PKGBUILDDIR>>/c++/include/objtools/readers/agp_read.hpp:61:6: note: declared here
61 | void AgpRead(CNcbiIstream& is,
| ^~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/readers/agp_read.cpp: In function ‘void ncbi::AgpRead(CNcbiIstream&, std::vector<CRef<objects::CSeq_entry> >&, EAgpRead_IdRule, bool, std::vector<std::vector<char> >*)’:
/<<PKGBUILDDIR>>/c++/src/objtools/readers/agp_read.cpp:74:12: warning: ‘void ncbi::AgpRead(CNcbiIstream&, std::vector<CRef<objects::CBioseq> >&, EAgpRead_IdRule, bool, std::vector<std::vector<char> >*)’ is deprecated [-Wdeprecated-declarations]
74 | AgpRead(is, bioseqs, component_id_rule, set_gap_data, component_types);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/readers/agp_read.hpp:52:6: note: declared here
52 | void AgpRead(CNcbiIstream& is,
| ^~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/id2/ID2S_Reply_Get_Chunk_.cpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/id2/id2___.cpp:2:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_types_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/feat_ci.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objmgr/table_field.cpp:45:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/seq_table_info.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/objmgr/table_field.cpp:34:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objmgr/seq_annot_info.cpp:41:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/seq_annot_info.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/objmgr/seq_annot_info.cpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_types_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/feat_ci.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objmgr/seq_table_info.cpp:44:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/seq_table_info.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/objmgr/seq_table_info.cpp:34:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/readers/agp_util.cpp: In member function ‘int ncbi::CAgpErrEx::GetCount(ncbi::CAgpErr::EErrCode) const’:
/<<PKGBUILDDIR>>/c++/src/objtools/readers/agp_util.cpp:1706:14: warning: comparison between ‘enum ncbi::CAgpErr::EErrCode’ and ‘enum ncbi::CAgpErrEx::<unnamed>’ [-Wenum-compare]
1706 | if (code < CODE_Last) {
| ~~~~~^~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objmgr/seq_annot_info.cpp:45:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objmgr/seq_annot_info.cpp:46:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
103 | auto_ptr<TIndices> m_Indices;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
154 | auto_ptr<TIndices> m_Indices;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
idate.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/objtools/readers/acc_pattern.cpp -o acc_pattern.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/objtools/readers/agp_read.cpp -o agp_read.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/objtools/readers/agp_seq_entry.cpp -o agp_seq_entry.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/objtools/readers/agp_util.cpp -o agp_util.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/objtools/readers/agp_validate_reader.cpp -o agp_validate_reader.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/objtools/readers/cigar.cpp -o cigar.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/objmgr/seq_annot_info.cpp:62:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objmgr'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/seq_table_setters.cpp -o seq_table_setters.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/seq_table_info.cpp -o seq_table_info.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/seq_annot_info.cpp -o seq_annot_info.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/table_field.cpp -o table_field.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/seq_map_switch.cpp -o seq_map_switch.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/snp_annot_info.cpp -o snp_annot_info.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=f/<<PKGBUILDDIR>>/c++/src/objtools/readers/agp_validate_reader.cpp: In member function ‘virtual void ncbi::CAgpValidateReader::OnGapOrComponent()’:
/<<PKGBUILDDIR>>/c++/src/objtools/readers/agp_validate_reader.cpp:160:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ncbi::TSeqPos’ {aka ‘unsigned int’} [-Wsign-compare]
160 | if(m_max_obj_beg < m_this_row->object_beg) m_max_obj_beg = m_this_row->object_beg;
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/readers/agp_validate_reader.cpp:229:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ncbi::TSeqPos’ {aka ‘unsigned int’} [-Wsign-compare]
229 | if(m_max_comp_beg < m_this_row->component_beg) m_max_comp_beg = m_this_row->component_beg;
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/readers/agp_validate_reader.cpp:405:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ncbi::TSeqPos’ {aka ‘unsigned int’} [-Wsign-compare]
405 | if(it->second != m_this_row->component_end) m_has_partial_comp=true;
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/readers/agp_validate_reader.cpp:407:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ncbi::TSeqPos’ {aka ‘unsigned int’} [-Wsign-compare]
407 | if(it->second > m_this_row->component_end || m_this_row->component_beg>1) {
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/readers/agp_validate_reader.cpp: In member function ‘virtual void ncbi::CAgpValidateReader::OnObjectChange()’:
/<<PKGBUILDDIR>>/c++/src/objtools/readers/agp_validate_reader.cpp:541:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ncbi::TSeqPos’ {aka ‘unsigned int’} [-Wsign-compare]
541 | if(m_expected_obj_len!=m_prev_row->object_end) {
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/readers/agp_validate_reader.cpp:585:28: warning: catching polymorphic type ‘class ncbi::CException’ by value [-Wcatch-value=]
585 | catch(CException e){
| ^
In file included from /<<PKGBUILDDIR>>/c++/src/objmgr/snp_annot_info.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
103 | auto_ptr<TIndices> m_Indices;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objmgr/snp_annot_info.cpp:32:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
154 | auto_ptr<TIndices> m_Indices;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/seq_align_mapper.hpp:42,
from /<<PKGBUILDDIR>>/c++/src/objmgr/seq_map_switch.cpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/seqloc/Seq_id_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/seqloc/Seq_id.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objects/seq/seq_id_handle.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_map.hpp:41,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_map_switch.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objmgr/seq_map_switch.cpp:35:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/id2'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/id2/id2__.cpp -o id2__.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/id2/id2___.cpp -o id2___.o
/bin/rm -f libid2.so .libid2.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libid2.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC id2__.o id2___.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lseqsplit -lseq -lxser -lxncbi -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libid2.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libid2.so
/bin/ln -f .id2.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.id2.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/id2'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/id2'
cd objtools/pubseq_gateway/client/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=psg_client UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/pubseq_gateway/client'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/pubseq_gateway/client'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/pubseq_gateway/client'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/pubseq_gateway/client'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: *** No rule to make target '/<<PKGBUILDDIR>>/c++/BUILD/status/LIBUV.enabled', needed by 'requirements'. Stop.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/pubseq_gateway/client'
NOTE: skipping project "psg_client" due to unmet requirements
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/pubseq_gateway/client'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/pubseq_gateway/client'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/pubseq_gateway/client'
In file included from /<<PKGBUILDDIR>>/c++/src/objmgr/snp_annot_info.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/mod_reader.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/objtools/readers/fasta.cpp:37:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_types_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/objmgr/annot_types_ci.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objmgr/annot_types_ci.cpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
103 | auto_ptr<TIndices> m_Indices;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
154 | auto_ptr<TIndices> m_Indices;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/src/objtools/readers/alnread.cpp:34:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/objtools/readers/alnread.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_errors.cpp:34:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_errors.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/objtools/readers/fasta.cpp -o fasta.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_formats.cpp -o aln_formats.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/objtools/readers/alnread.cpp -o alnread.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_errors.cpp -o aln_errors.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_error_reporter.cpp -o aln_error_reporter.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_formatguess.cpp -o aln_formatguess.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILIn file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/seq_align_mapper.hpp:42,
from /<<PKGBUILDDIR>>/c++/src/objmgr/seq_loc_cvt.cpp:37:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/seq_loc_cvt.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/objmgr/seq_loc_cvt.cpp:34:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/scope_impl.hpp:47,
from /<<PKGBUILDDIR>>/c++/src/objmgr/seq_loc_cvt.cpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/priority.hpp:153:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
153 | auto_ptr<CPriority_I> m_Sub_I;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/scope_impl.hpp:53:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blast'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/blast/blast__.cpp -o blast__.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/blast/blast___.cpp -o blast___.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/blast/names.cpp -o names.o
/bin/rm -f libxnetblast.so .libxnetblast.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libxnetblast.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC blast__.o blast___.o names.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lscoremat -lseqset -lseq -lxser -lxncbi -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblast.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libxnetblast.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libxnetblast.so
/bin/ln -f .xnetblast.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.xnetblast.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blast'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blast'
cd objects/blast/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xnetblastcli UNIX_PROJ="" sources= configurables=configurables.null
cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blast_unit_test_util UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blast'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blast'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blast'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blast'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blast'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api TMPL=blast_unit_test_util -w -j4 --jobserver-auth=7,8 all
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objects/blast TMPL=xnetblastcli -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/src/objmgr/annot_selector.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_name.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_selector.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objmgr/annot_selector.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/test_objmgr.cpp:45:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp:61:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/aln_error_reporter.hpp:35,
from /<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_error_reporter.cpp:32:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/aln_error_reporter.hpp:34:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_formatguess.cpp:34:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_formatguess.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_util.cpp:34:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_util.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_util.cpp: In function ‘void ncbi::objects::AlnUtil::CheckId(const std::string&, const std::vector<ncbi::objects::SLineInfo>&, int, int, bool)’:
/<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_util.cpp:56:28: warning: comparison of integer expressions of different signedness: ‘std::vector<ncbi::objects::SLineInfo>::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
56 | if ((orderedIds.size() > idCount) &&
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_formatguess.cpp: In member function ‘bool ncbi::objects::CAlnFormatGuesser::xSampleIsClustal(TSample&, ncbi::objects::CPeekAheadStream&)’:
/<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_formatguess.cpp:137:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
137 | if (lineCount < sample.size()) {
| ~~~~~~~~~~^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_formatguess.cpp: In member function ‘bool ncbi::objects::CAlnFormatGuesser::xSampleIsFastaGap(const TSample&)’:
/<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_formatguess.cpp:176:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
176 | for ( ; i < sample.size(); ++i) {
| ~~^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_formatguess.cpp:181:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
181 | if (i < sample.size()) {
| ~~^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_formatguess.cpp: In member function ‘bool ncbi::objects::CAlnFormatGuesser::xSampleIsSequin(const TSample&)’:
/<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_formatguess.cpp:234:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
234 | for (int index=0; index < tokens.size(); ++index) {
| ~~~~~~^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_formatguess.cpp: In member function ‘bool ncbi::objects::CAlnFormatGuesser::xSampleIsMultAlign(const TSample&)’:
/<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_formatguess.cpp:258:23: warning: comparison of integer expressions of different signedness: ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
258 | if (sample.size() < lineIndex + 4) {
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_formatguess.cpp:295:22: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
295 | return (dataSize == (endOffset - startOffset + 1));
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_types_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/feat_ci.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objmgr/feat_ci.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/feat_ci.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objmgr/feat_ci.cpp:40:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
103 | auto_ptr<TIndices> m_Indices;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
154 | auto_ptr<TIndices> m_Indices;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objects/blast/blastclient_.cpp:39:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objmgr/feat_ci.cpp:42:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:56,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:41:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/sseqloc.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/test_objmgr.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/test_objmgr.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/seqloc/Na_strand_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/seqloc/Na_strand.hpp:42,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/test_objmgr.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiargs.hpp:84,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp_api.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_param.hpp:41,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:37:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const ncbi::objects::SFastaFileMap::SFastaEntry&}; _Tp = ncbi::objects::SFastaFileMap::SFastaEntry; _Alloc = std::allocator<ncbi::objects::SFastaFileMap::SFastaEntry>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<ncbi::objects::SFastaFileMap::SFastaEntry>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/test_objmgr.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp:41:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
ormat-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/annot_types_ci.cpp -o annot_types_ci.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/seq_loc_cvt.cpp -o seq_loc_cvt.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/annot_selector.cpp -o annot_selector.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/seq_descr_ci.cpp -o seq_descr_ci.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/feat_ci.cpp -o feat_ci.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/graph_ci.cpp -o graph_ci.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/annot_object.cppIn file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/showalign.hpp:48,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp:57:
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
108 | auto_ptr<CMemoryFile> m_memGi2GeneFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
111 | auto_ptr<CMemoryFile> m_memGene2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
114 | auto_ptr<CMemoryFile> m_memGi2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
117 | auto_ptr<CMemoryFile> m_memGene2GiFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/test_objmgr.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/showalign.hpp:49:
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1554 | static auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
654 | auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_scanner.cpp:34:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_scanner.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blast'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/blast/blastclient.cpp -o blastclient.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objects/blast/blastclient_.cpp -o blastclient_.o
/bin/rm -f libxnetblastcli.so .libxnetblastcli.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libxnetblastcli.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC blastclient.o blastclient_.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lxnetblast -lxconnect -lxser -lxutil -lxncbi -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblastcli.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libxnetblastcli.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libxnetblastcli.so
/bin/ln -f .xnetblastcli.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.xnetblastcli.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blast'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blast'
cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=seqalign_util UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
/<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_scanner.cpp: In member function ‘virtual void ncbi::objects::CAlnScanner::xVerifyAlignmentData(const ncbi::objects::CSequenceInfo&)’:
/<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_scanner.cpp:92:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<ncbi::objects::SLineInfo> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
92 | for (auto i=0; i < mSequences.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~~~~
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_scanner.cpp: In member function ‘bool ncbi::objects::CAlnScanner::xSeqIdIsEqualToInfoAt(const std::string&, int)’:
/<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_scanner.cpp:233:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ncbi::objects::SLineInfo>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
233 | if (index >= mSeqIds.size()) {
| ~~~~~~^~~~~~~~~~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api TMPL=seqalign_util -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_scanner_fastagap.cpp:53:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_scanner_fastagap.cpp:52:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_scanner_fastagap.cpp: In member function ‘virtual void ncbi::objects::CAlnScannerFastaGap::xImportAlignmentData(ncbi::objects::CSequenceInfo&, ncbi::objects::CLineInput&)’:
/<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_scanner_fastagap.cpp:121:41: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
121 | if (currentDataSize != expectedDataSize) {
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_types_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/graph_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/objmgr/graph_ci.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/mod_reader.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/aln_reader.hpp:41,
from /<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_reader.cpp:33:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/aln_reader.hpp:35:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_reader.cpp: In member function ‘void ncbi::CAlnReader::x_VerifyAlignmentInfo(const ncbi::objects::SAlignmentFile&, TReadFlags)’:
/<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_reader.cpp:409:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
409 | for (int i=0; i< numDeflines; ++i) {
| ~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_reader.cpp: In member function ‘bool ncbi::CAlnReader::x_IsGap(TNumrow, ncbi::TSeqPos, const std::string&)’:
/<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_reader.cpp:461:13: warning: comparison of integer expressions of different signedness: ‘ncbi::CAlnReader::TNumrow’ {aka ‘int’} and ‘std::vector<std::pair<unsigned int, unsigned int> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
461 | if (row > m_MiddleSections.size()) {
| ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_reader.cpp: In member function ‘void ncbi::CAlnReader::x_AssignDensegIds(TFastaFlags, ncbi::objects::CDense_seg&)’:
/<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_reader.cpp:507:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ncbi::objects::SLineInfo>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
507 | if (i < m_DeflineInfo.size() && !m_DeflineInfo[i].mData.empty()) {
| ~~^~~~~~~~~~~~~~~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -I/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/../../api /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/test_objmgr.cpp -o test_objmgr.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -I/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/../../api /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp -o blast_test_util.o
/bin/rm -f libblast_unit_test_util.a .libblast_unit_test_util.a.stamp
ar cr libblast_unit_test_util.a test_objmgr.o blast_test_util.o
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_unit_test_util.a /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libblast_unit_test_util.a /<<PKGBUILDDIR>>/c++/BUILD/lib/libblast_unit_test_util.a
/bin/ln -f .blast_unit_test_util.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.blast_unit_test_util.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
cd app/blast/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blast_app_util UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/app/blast TMPL=blast_app_util -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/neutral_seqalign.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/seqalign_set_convert.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/seqalign_set_convert.cpp:36:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const ncbi::blast::qa::SeqAlign&}; _Tp = ncbi::blast::qa::SeqAlign; _Alloc = std::allocator<ncbi::blast::qa::SeqAlign>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<ncbi::blast::qa::SeqAlign>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ncbi::blast::qa::SeqAlign; _Alloc = std::allocator<ncbi::blast::qa::SeqAlign>]’,
inlined from ‘void ncbi::blast::qa::BlastSeqAlignSetConvert(const ncbi::objects::CSeq_align&, std::vector<SeqAlign>&)’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/seqalign_set_convert.cpp:162:25:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::blast::qa::SeqAlign*, std::vector<ncbi::blast::qa::SeqAlign> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/seqalign_cmp.cpp -o seqalign_cmp.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/seqalign_set_convert.cpp -o seqalign_set_convert.o
/bin/rm -f libseqalign_util.a .libseqalign_util.a.stamp
ar cr libseqalign_util.a seqalign_cmp.o seqalign_set_convert.o
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqalign_util.a /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libseqalign_util.a /<<PKGBUILDDIR>>/c++/BUILD/lib/libseqalign_util.a
/bin/ln -f .seqalign_util.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.seqalign_util.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
cd objtools/blast/services/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blast_services UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/services'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/services'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/services'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/services'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/services'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objtools/blast/services TMPL=blast_services -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_object_index.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objmgr/annot_object_index.cpp:34:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const ncbi::objects::SAnnotObject_Key&}; _Tp = ncbi::objects::SAnnotObject_Key; _Alloc = std::allocator<ncbi::objects::SAnnotObject_Key>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<ncbi::objects::SAnnotObject_Key>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ncbi::objects::SAnnotObject_Key; _Alloc = std::allocator<ncbi::objects::SAnnotObject_Key>]’,
inlined from ‘void ncbi::objects::SAnnotObjectsIndex::AddMap(const ncbi::objects::SAnnotObject_Key&, const ncbi::objects::SAnnotObject_Index&)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/annot_object_index.cpp:94:21:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::SAnnotObject_Key*, std::vector<ncbi::objects::SAnnotObject_Key> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/cgi/cgictx.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:41,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:49,
from /<<PKGBUILDDIR>>/c++/src/app/blast/blast_app_util.cpp:54:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ncbi::objects::SFastaFileMap::SFastaEntry; _Alloc = std::allocator<ncbi::objects::SFastaFileMap::SFastaEntry>]’,
inlined from ‘virtual void ncbi::objects::CFastaMapper::AssembleSeq(ncbi::objects::ILineErrorListener*)’ at /<<PKGBUILDDIR>>/c++/src/objtools/readers/fasta.cpp:1891:30:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::SFastaFileMap::SFastaEntry*, std::vector<ncbi::objects::SFastaFileMap::SFastaEntry> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/app/blast/blast_app_util.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/app/blast/blast_app_util.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:45:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_scanner_nexus.cpp:34:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_scanner_nexus.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_scanner_clustal.cpp:34:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_scanner_clustal.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_scanner_clustal.cpp: In member function ‘void ncbi::objects::CAlnScannerClustal::sProcessClustalDataLine(const std::vector<std::__cxx11::basic_string<char> >&, int, int, int, bool, int&)’:
/<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_scanner_clustal.cpp:296:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
296 | if (currentLineLength != blockLineLength) {
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
E_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_util.cpp -o aln_util.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_reader.cpp -o aln_reader.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_scanner.cpp -o aln_scanner.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_scanner_fastagap.cpp -o aln_scanner_fastagap.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_scanner_clustal.cpp -o aln_scanner_clustal.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_scanner_nexus.cpp -o aln_scanner_nexus.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/bIn file included from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_types_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/objmgr/annot_ci.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/objmgr/tse_info.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info_object.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/seq_entry_info.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objmgr/tse_info_object.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info_object.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/objmgr/tse_info_object.cpp:35:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objmgr/tse_info.cpp:44:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
103 | auto_ptr<TIndices> m_Indices;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
154 | auto_ptr<TIndices> m_Indices;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_results.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/uniform_search.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:40,
from /<<PKGBUILDDIR>>/c++/src/app/blast/blast_app_util.hpp:40:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:46:
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
65 | auto_ptr<CNcbiOstream> m_FileStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
156 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
157 | auto_ptr<CCompressOStream> m_CompressOStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
875 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/app/blast/blast_app_util.hpp:45:
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
743 | auto_ptr<CObjectIStream> m_ObjectStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
-o annot_object.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/annot_object_index.cpp -o annot_object_index.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/annot_ci.cpp -o annot_ci.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/tse_info.cpp -o tse_info.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/tse_info_object.cpp -o tse_info_object.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/seq_entry_info.cpp -o seq_entry_info.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/bioseq_base_info.cpp -o bioseq_base_info.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SIn file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blastfmtutil.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/app/blast/blast_app_util.hpp:50:
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
108 | auto_ptr<CMemoryFile> m_memGi2GeneFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
111 | auto_ptr<CMemoryFile> m_memGene2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
114 | auto_ptr<CMemoryFile> m_memGi2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
117 | auto_ptr<CMemoryFile> m_memGene2GiFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1554 | static auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blastfmtutil.hpp:41:
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
654 | auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_scanner_phylip.cpp:34:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_scanner_phylip.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_scanner_phylip.cpp: In member function ‘virtual void ncbi::objects::CAlnScannerPhylip::xImportAlignmentData(ncbi::objects::CSequenceInfo&, ncbi::objects::CLineInput&)’:
/<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_scanner_phylip.cpp:129:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
129 | if (dataLineCount < mSequenceCount) { // in first block
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_scanner_phylip.cpp: In member function ‘virtual void ncbi::objects::CAlnScannerPhylip::xVerifyAlignmentData(const ncbi::objects::CSequenceInfo&)’:
/<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_scanner_phylip.cpp:210:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ncbi::objects::SLineInfo>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
210 | if (mSequenceCount != mSeqIds.size()) {
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/app/blast/blast_app_util.cpp:44:
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/search_strategy.hpp:178:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
178 | auto_ptr<CImportStrategyData> m_Data;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/search_strategy.hpp:181:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
181 | auto_ptr<CBlastOptionsBuilder> m_OptionsBuilder;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objmgr/seq_entry_info.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info_object.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/seq_entry_info.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objmgr/seq_entry_info.cpp:35:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objmgr/seq_entry_info.cpp:40:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/app/blast/blast_app_util.cpp:49:
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
449 | auto_ptr<CNcbiIfstream> m_ConfigFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
450 | auto_ptr<CNcbiRegistry> m_Reg;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_scanner_sequin.cpp:34:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_scanner_sequin.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_scanner_sequin.cpp: In member function ‘virtual void ncbi::objects::CAlnScannerSequin::xImportAlignmentData(ncbi::objects::CSequenceInfo&, ncbi::objects::CLineInput&)’:
/<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_scanner_sequin.cpp:73:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ncbi::objects::SLineInfo>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
73 | if (lineInBlock != mSeqIds.size()) {
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_scanner_sequin.cpp:156:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ncbi::objects::SLineInfo>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
156 | if (lineInBlock >= mSeqIds.size()) {
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_scanner_sequin.cpp:186:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
186 | for (auto i = 0; i < seqData.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_scanner_sequin.cpp: In static member function ‘static bool ncbi::objects::CAlnScannerSequin::xExtractSequinSequenceData(const std::string&, std::string&, std::string&)’:
/<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_scanner_sequin.cpp:259:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
259 | for (auto curBlock = 3; curBlock < tokens.size() - 1; ++curBlock) {
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_scanner_sequin.cpp:264:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
264 | for (auto curBlock = 1; curBlock < tokens.size(); ++curBlock) {
| ~~~~~~~~~^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
414 | auto_ptr<CBlast_SAM_Formatter> m_SamFormatter;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_scanner_multalign.cpp:34:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_scanner_multalign.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/app/blast/blast_app_util.cpp: In function ‘void ncbi::CheckMTByQueries_DBSize(CRef<blast::CLocalDbAdapter>&, const blast::CBlastOptions&)’:
/<<PKGBUILDDIR>>/c++/src/app/blast/blast_app_util.cpp:1011:18: warning: unused variable ‘prog’ [-Wunused-variable]
1011 | EProgram prog = opt.GetProgram();
| ^~~~
/<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_scanner_multalign.cpp: In member function ‘virtual void ncbi::objects::CAlnScannerMultAlign::xImportAlignmentData(ncbi::objects::CSequenceInfo&, ncbi::objects::CLineInput&)’:
/<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_scanner_multalign.cpp:125:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
125 | if (lineInBlock != expectedNumSequences) {
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_scanner_multalign.cpp:135:48: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
135 | if (!inFirstBlock && lineInBlock == expectedNumSequences) {
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/services'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/blast/services/blast_services.cpp -o blast_services.o
/bin/rm -f libblast_services.so .libblast_services.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libblast_services.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC blast_services.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lxnetblastcli -lxnetblast -lxser -lxconnect -lxutil -lxncbi -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_services.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libblast_services.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libblast_services.so
/bin/ln -f .blast_services.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.blast_services.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/services'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/services'
In file included from /usr/include/c++/12/bits/stl_algo.h:60,
from /usr/include/c++/12/algorithm:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:180:
/usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _Distance = int; _Tp = ncbi::objects::CSeq_id_Handle; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objmgr/bioseq_base_info.cpp:40:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/bioseq_base_info.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/objmgr/bioseq_base_info.cpp:35:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
1782 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
1802 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
1908 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from ‘void ncbi::objects::{anonymous}::x_SortUnique(ncbi::objects::CTSE_Info::TSeqIds&)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/seq_entry_info.cpp:689:13:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31,
inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from ‘void ncbi::objects::{anonymous}::x_SortUnique(ncbi::objects::CTSE_Info::TSeqIds&)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/seq_entry_info.cpp:689:13:
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/memory:66,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_stack.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/usr/include/c++/12/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _ForwardIterator = ncbi::objects::CSeq_id_Handle*]’:
/usr/include/c++/12/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
113 | __do_uninit_copy(_InputIterator __first, _InputIterator __last,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const ncbi::objects::CSeq_id_Handle&}; _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator<ncbi::objects::CSeq_id_Handle>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<ncbi::objects::CSeq_id_Handle>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >; _ForwardIterator = ncbi::objects::CSeq_id_Handle*; bool _TrivialValueTypes = false]’,
inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _ForwardIterator = ncbi::objects::CSeq_id_Handle*]’ at /usr/include/c++/12/bits/stl_uninitialized.h:185:15,
inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _ForwardIterator = ncbi::objects::CSeq_id_Handle*; _Tp = ncbi::objects::CSeq_id_Handle]’ at /usr/include/c++/12/bits/stl_uninitialized.h:372:37,
inlined from ‘void std::vector<_Tp, _Alloc>::_M_range_insert(iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >; _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator<ncbi::objects::CSeq_id_Handle>]’ at /usr/include/c++/12/bits/vector.tcc:769:34,
inlined from ‘void std::vector<_Tp, _Alloc>::_M_insert_dispatch(iterator, _InputIterator, _InputIterator, std::__false_type) [with _InputIterator = __gnu_cxx::__normal_iterator<const ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >; _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator<ncbi::objects::CSeq_id_Handle>]’ at /usr/include/c++/12/bits/stl_vector.h:1779:19,
inlined from ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >; <template-parameter-2-2> = void; _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator<ncbi::objects::CSeq_id_Handle>]’ at /usr/include/c++/12/bits/stl_vector.h:1481:22,
inlined from ‘void ncbi::objects::CSeq_entry_Info::x_GetBioseqsIds(TSeqIds&) const’ at /<<PKGBUILDDIR>>/c++/src/objmgr/seq_entry_info.cpp:705:19:
/usr/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
137 | { return std::__do_uninit_copy(__first, __last, __result); }
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >; _ForwardIterator = ncbi::objects::CSeq_id_Handle*; bool _TrivialValueTypes = false]’,
inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _ForwardIterator = ncbi::objects::CSeq_id_Handle*]’ at /usr/include/c++/12/bits/stl_uninitialized.h:185:15,
inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _ForwardIterator = ncbi::objects::CSeq_id_Handle*; _Tp = ncbi::objects::CSeq_id_Handle]’ at /usr/include/c++/12/bits/stl_uninitialized.h:372:37,
inlined from ‘void std::vector<_Tp, _Alloc>::_M_range_insert(iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >; _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator<ncbi::objects::CSeq_id_Handle>]’ at /usr/include/c++/12/bits/vector.tcc:796:38,
inlined from ‘void std::vector<_Tp, _Alloc>::_M_insert_dispatch(iterator, _InputIterator, _InputIterator, std::__false_type) [with _InputIterator = __gnu_cxx::__normal_iterator<const ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >; _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator<ncbi::objects::CSeq_id_Handle>]’ at /usr/include/c++/12/bits/stl_vector.h:1779:19,
inlined from ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >; <template-parameter-2-2> = void; _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator<ncbi::objects::CSeq_id_Handle>]’ at /usr/include/c++/12/bits/stl_vector.h:1481:22,
inlined from ‘void ncbi::objects::CSeq_entry_Info::x_GetBioseqsIds(TSeqIds&) const’ at /<<PKGBUILDDIR>>/c++/src/objmgr/seq_entry_info.cpp:705:19:
/usr/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
137 | { return std::__do_uninit_copy(__first, __last, __result); }
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator<ncbi::objects::CSeq_id_Handle>]’,
inlined from ‘void ncbi::objects::CSeq_entry_Info::x_GetAnnotIds(TSeqIds&) const’ at /<<PKGBUILDDIR>>/c++/src/objmgr/seq_entry_info.cpp:731:30:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
uild/ncbi-blast+-iztKfv/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_scanner_phylip.cpp -o aln_scanner_phylip.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_scanner_sequin.cpp -o aln_scanner_sequin.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/objtools/readers/aln_scanner_multalign.cpp -o aln_scanner_multalign.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/objtools/readers/fasta_aln_builder.cpp -o fasta_aln_builder.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/objtools/readers/fasta_reader_utils.cpp -o fasta_reader_utils.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/objtools/readers/getfeature.cpp -o getfeature.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/build/ncbi-blIn file included from /<<PKGBUILDDIR>>/c++/src/objmgr/bioseq_set_info.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info_object.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/seq_entry_info.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objmgr/bioseq_set_info.cpp:35:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /usr/include/c++/12/bits/stl_algo.h:60,
from /usr/include/c++/12/algorithm:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:180:
/usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _Distance = int; _Tp = ncbi::objects::CSeq_id_Handle; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
1782 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
1802 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objmgr/bioseq_set_info.cpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/objtools/readers/track_data.cpp:35:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/app/blast/blast_app_util.cpp: At global scope:
/<<PKGBUILDDIR>>/c++/src/app/blast/blast_app_util.cpp:127:15: warning: ‘std::string ncbi::s_FindBlastDbDataLoaderName(const std::string&, bool)’ defined but not used [-Wunused-function]
127 | static string s_FindBlastDbDataLoaderName(const string& dbname, bool is_protein)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/mod_reader.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/objtools/readers/fasta_reader_utils.cpp:38:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbictype.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistre.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_stack.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:42,
from /<<PKGBUILDDIR>>/c++/src/objtools/readers/fasta_reader_utils.cpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
1908 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from ‘void ncbi::objects::{anonymous}::x_SortUnique(ncbi::objects::CTSE_Info::TSeqIds&)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/tse_info.cpp:670:13:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31,
inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from ‘void ncbi::objects::{anonymous}::x_SortUnique(ncbi::objects::CTSE_Info::TSeqIds&)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/tse_info.cpp:670:13:
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const ncbi::objects::CSeq_id_Handle&}; _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator<ncbi::objects::CSeq_id_Handle>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<ncbi::objects::CSeq_id_Handle>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator<ncbi::objects::CSeq_id_Handle>]’,
inlined from ‘virtual void ncbi::objects::CTSE_Info::GetBioseqsIds(TSeqIds&) const’ at /<<PKGBUILDDIR>>/c++/src/objmgr/tse_info.cpp:682:26:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator<ncbi::objects::CSeq_id_Handle>]’,
inlined from ‘virtual void ncbi::objects::CTSE_Info::GetAnnotIds(TSeqIds&) const’ at /<<PKGBUILDDIR>>/c++/src/objmgr/tse_info.cpp:701:30:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/objtools/readers/reader_data.cpp:35:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objmgr/bioseq_info.cpp:37:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/bioseq_base_info.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/bioseq_info.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/objmgr/bioseq_info.cpp:35:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objmgr/bioseq_info.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/mod_reader.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/objtools/readers/gff_reader.cpp:60:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiutil.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/gff_reader.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/objtools/readers/gff_reader.cpp:35:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/readers/gff_reader.cpp:472:18: warning: ‘CGFFReader’ is deprecated [-Wdeprecated-declarations]
472 | CRef<CGFFReader::SRecord>
| ^~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/readers/gff_reader.hpp:71:44: note: declared here
71 | class NCBI_DEPRECATED NCBI_XOBJREAD_EXPORT CGFFReader
| ^~~~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {ncbi::CSeqDBGiList::SGiOid}; _Tp = ncbi::CSeqDBGiList::SGiOid; _Alloc = std::allocator<ncbi::CSeqDBGiList::SGiOid>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<ncbi::CSeqDBGiList::SGiOid>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ncbi::CSeqDBGiList::SGiOid}; _Tp = ncbi::CSeqDBGiList::SGiOid; _Alloc = std::allocator<ncbi::CSeqDBGiList::SGiOid>]’:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::CSeqDBGiList::SGiOid*, std::vector<ncbi::CSeqDBGiList::SGiOid> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {ncbi::objects::CSeq_id_Handle}; _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator<ncbi::objects::CSeq_id_Handle>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<ncbi::objects::CSeq_id_Handle>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ncbi::objects::CSeq_id_Handle}; _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator<ncbi::objects::CSeq_id_Handle>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator<ncbi::objects::CSeq_id_Handle>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void ncbi::s_ExtractSeqidsAndRanges(const blast::CSearchResultSet&, objects::CScope::TIds&, std::vector<CRange<unsigned int> >&)’ at /<<PKGBUILDDIR>>/c++/src/app/blast/blast_app_util.cpp:703:26,
inlined from ‘void ncbi::BlastFormatter_PreFetchSequenceData(const blast::CSearchResultSet&, CRef<objects::CScope>, blast::CFormattingArgs::EOutputFormat)’ at /<<PKGBUILDDIR>>/c++/src/app/blast/blast_app_util.cpp:779:32:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objmgr/priority.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/priority.hpp:153:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
153 | auto_ptr<CPriority_I> m_Sub_I;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/priority.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/objmgr/data_source.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info_object.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/seq_entry_info.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /usr/include/c++/12/algorithm:60,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:180:
/usr/include/c++/12/bits/stl_algobase.h: In function ‘_RandomAccessIterator std::__find_if(_RandomAccessIterator, _RandomAccessIterator, _Predicate, random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _Predicate = __gnu_cxx::__ops::_Iter_equals_val<const ncbi::objects::CSeq_id_Handle>]’:
/usr/include/c++/12/bits/stl_algobase.h:2059:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
2059 | __find_if(_RandomAccessIterator __first, _RandomAccessIterator __last,
| ^~~~~~~~~
/usr/include/c++/12/bits/stl_algobase.h:2059:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/objtools/readers/reader_base.cpp:35:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/prefetch_impl.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objmgr/prefetch_impl.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/prefetch_impl.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In function ‘_Iterator std::__find_if(_Iterator, _Iterator, _Predicate) [with _Iterator = __gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _Predicate = __gnu_cxx::__ops::_Iter_equals_val<const ncbi::objects::CSeq_id_Handle>]’,
inlined from ‘_IIter std::find(_IIter, _IIter, const _Tp&) [with _IIter = __gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _Tp = ncbi::objects::CSeq_id_Handle]’ at /usr/include/c++/12/bits/stl_algo.h:3851:28,
inlined from ‘bool ncbi::objects::CBioseq_Info::RemoveId(const ncbi::objects::CSeq_id_Handle&)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/bioseq_info.cpp:447:31:
/usr/include/c++/12/bits/stl_algobase.h:2112:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
2112 | return __find_if(__first, __last, __pred,
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
2113 | std::__iterator_category(__first));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/app/blast/blast_app_util.cpp -o blast_app_util.o
/bin/rm -f libblast_app_util.a .libblast_app_util.a.stamp
ar cr libblast_app_util.a blast_app_util.o
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_app_util.a /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libblast_app_util.a /<<PKGBUILDDIR>>/c++/BUILD/lib/libblast_app_util.a
/bin/ln -f .blast_app_util.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.blast_app_util.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/objmgr/data_source.cpp:71:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/scope_impl.hpp:53,
from /<<PKGBUILDDIR>>/c++/src/objmgr/priority.cpp:37:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {ncbi::objects::CSeq_id_Handle}; _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator<ncbi::objects::CSeq_id_Handle>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<ncbi::objects::CSeq_id_Handle>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ncbi::objects::CSeq_id_Handle}; _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator<ncbi::objects::CSeq_id_Handle>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator<ncbi::objects::CSeq_id_Handle>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void ncbi::objects::CBioseq_Info::x_SetObject(TObject&)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/bioseq_info.cpp:304:27:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const ncbi::objects::CSeq_id_Handle&}; _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator<ncbi::objects::CSeq_id_Handle>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<ncbi::objects::CSeq_id_Handle>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In function ‘_Iterator std::__find_if(_Iterator, _Iterator, _Predicate) [with _Iterator = __gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _Predicate = __gnu_cxx::__ops::_Iter_equals_val<const ncbi::objects::CSeq_id_Handle>]’,
inlined from ‘_IIter std::find(_IIter, _IIter, const _Tp&) [with _IIter = __gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _Tp = ncbi::objects::CSeq_id_Handle]’ at /usr/include/c++/12/bits/stl_algo.h:3851:28,
inlined from ‘bool ncbi::objects::CBioseq_Info::AddId(const ncbi::objects::CSeq_id_Handle&)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/bioseq_info.cpp:431:31:
/usr/include/c++/12/bits/stl_algobase.h:2112:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
2112 | return __find_if(__first, __last, __pred,
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
2113 | std::__iterator_category(__first));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator<ncbi::objects::CSeq_id_Handle>]’,
inlined from ‘bool ncbi::objects::CBioseq_Info::AddId(const ncbi::objects::CSeq_id_Handle&)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/bioseq_info.cpp:435:19:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/objmgr/prefetch_impl.cpp:37:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objmgr/prefetch_impl.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/scope_impl.hpp:47,
from /<<PKGBUILDDIR>>/c++/src/objmgr/prefetch_impl.cpp:40:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/priority.hpp:153:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
153 | auto_ptr<CPriority_I> m_Sub_I;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
ast+-iztKfv/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/objtools/readers/gff_reader.cpp -o gff_reader.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/objtools/readers/track_data.cpp -o track_data.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/objtools/readers/reader_data.cpp -o reader_data.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/objtools/readers/microarray_reader.cpp -o microarray_reader.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/objtools/readers/phrap.cpp -o phrap.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/objtools/readers/reader_base.cpp -o reader_base.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/objtools/readers/readfIn file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/mod_reader.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/objtools/readers/reader_base.cpp:99:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/readers/reader_base.cpp:34:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
OURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/bioseq_set_info.cpp -o bioseq_set_info.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/bioseq_info.cpp -o bioseq_info.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/data_source.cpp -o data_source.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/priority.cpp -o priority.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/prefetch_impl.cpp -o prefetch_impl.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/prefetch_manager.cpp -o prefetch_manager.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/prefetch_manager_impl.cpp -o prefetch_manager_impl.o
/usr/bin/g++ -std=gnu++14 -c -Wall -In file included from /usr/include/c++/12/algorithm:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:180:
/usr/include/c++/12/bits/stl_algo.h: In function ‘_ForwardIterator std::__unique(_ForwardIterator, _ForwardIterator, _BinaryPredicate) [with _ForwardIterator = __gnu_cxx::__normal_iterator<pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle>*, vector<pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle> > >; _BinaryPredicate = __gnu_cxx::__ops::_Iter_equal_to_iter]’:
/usr/include/c++/12/bits/stl_algo.h:902:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle>*, std::vector<std::pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle> > >’ changed in GCC 7.1
902 | __unique(_ForwardIterator __first, _ForwardIterator __last,
| ^~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:902:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle>*, std::vector<std::pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle> > >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle>*, vector<pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle> > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle>*, std::vector<std::pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle> > >’ changed in GCC 7.1
1782 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const ncbi::objects::SSeqMatch_DS&}; _Tp = ncbi::objects::SSeqMatch_DS; _Alloc = std::allocator<ncbi::objects::SSeqMatch_DS>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<ncbi::objects::SSeqMatch_DS>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/bits/stl_algo.h:60:
/usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle>*, vector<pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle> > >; _Distance = int; _Tp = pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle>; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle>*, std::vector<std::pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle> > >’ changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator, iterator) [with _Tp = std::pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle>; _Alloc = std::allocator<std::pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle> >]’:
/usr/include/c++/12/bits/vector.tcc:189:5: note: parameter passing for argument of type ‘std::vector<std::pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle> >::iterator’ changed in GCC 7.1
189 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc:189:5: note: parameter passing for argument of type ‘std::vector<std::pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle> >::iterator’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle>*, vector<pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle>*, std::vector<std::pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle> > >’ changed in GCC 7.1
1802 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle>*, std::vector<std::pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle> > >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle>*, vector<pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:1844:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle>*, std::vector<std::pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle> > >’ changed in GCC 7.1
1844 | __final_insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1844:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle>*, std::vector<std::pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle> > >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle>*, std::vector<std::pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle> > >’ changed in GCC 7.1
1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle>*, std::vector<std::pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle> > >’ changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/scope_impl.hpp:47,
from /<<PKGBUILDDIR>>/c++/src/objmgr/heap_scope.cpp:42:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/priority.hpp:153:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
153 | auto_ptr<CPriority_I> m_Sub_I;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/heap_scope.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objmgr/heap_scope.cpp:41:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ncbi::objects::SSeqMatch_DS; _Alloc = std::allocator<ncbi::objects::SSeqMatch_DS>]’,
inlined from ‘ncbi::objects::CDataSource::TSeqMatches ncbi::objects::CDataSource::GetMatches(const ncbi::objects::CSeq_id_Handle&, const TTSE_LockSet&)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/data_source.cpp:1238:30:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::SSeqMatch_DS*, std::vector<ncbi::objects::SSeqMatch_DS> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_types_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/feat_ci.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/prefetch_actions.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objmgr/prefetch_actions.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/prefetch_manager.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/prefetch_actions.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle>}; _Tp = std::pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle>; _Alloc = std::allocator<std::pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle> >]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<std::pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle> >::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle>}; _Tp = std::pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle>; _Alloc = std::allocator<std::pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle> >]’:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle>*, std::vector<std::pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle> > >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/scope_impl.hpp:47,
from /<<PKGBUILDDIR>>/c++/src/objmgr/prefetch_actions.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/priority.hpp:153:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
153 | auto_ptr<CPriority_I> m_Sub_I;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle>*, vector<pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle>*, std::vector<std::pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle> > >’ changed in GCC 7.1
1908 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle>*, std::vector<std::pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle> > >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle>*, std::vector<std::pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle> > >’ changed in GCC 7.1
1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/objmgr/scope.cpp:41:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:43:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle>*, vector<pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle>*, vector<pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle> > >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from ‘void ncbi::objects::CDataSource::GetTSESetWithBioseqAnnots(const ncbi::objects::CBioseq_Info&, const TTSE_Lock&, TTSE_LockMatchSet&, const ncbi::objects::SAnnotSelector*, ncbi::objects::CDataLoader::TProcessedNAs*, bool)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/data_source.cpp:1007:9:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle>*, std::vector<std::pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle> > >’ changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1940:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle>*, std::vector<std::pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle> > >’ changed in GCC 7.1
1940 | std::__final_insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘_FIter std::unique(_FIter, _FIter) [with _FIter = __gnu_cxx::__normal_iterator<pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle>*, vector<pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle> > >]’,
inlined from ‘void ncbi::objects::CDataSource::GetTSESetWithBioseqAnnots(const ncbi::objects::CBioseq_Info&, const TTSE_Lock&, TTSE_LockMatchSet&, const ncbi::objects::SAnnotSelector*, ncbi::objects::CDataLoader::TProcessedNAs*, bool)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/data_source.cpp:1008:21:
/usr/include/c++/12/bits/stl_algo.h:945:27: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle>*, std::vector<std::pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle> > >’ changed in GCC 7.1
945 | return std::__unique(__first, __last,
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
946 | __gnu_cxx::__ops::__iter_equal_to_iter());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = std::pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle>; _Alloc = std::allocator<std::pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle> >]’,
inlined from ‘void ncbi::objects::CDataSource::GetTSESetWithBioseqAnnots(const ncbi::objects::CBioseq_Info&, const TTSE_Lock&, TTSE_LockMatchSet&, const ncbi::objects::SAnnotSelector*, ncbi::objects::CDataLoader::TProcessedNAs*, bool)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/data_source.cpp:1008:14:
/usr/include/c++/12/bits/stl_vector.h:1561:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle>*, std::vector<std::pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle> > >’ changed in GCC 7.1
1561 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle>*, vector<pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle>*, vector<pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle> > >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from ‘void ncbi::objects::CDataSource::GetTSESetWithOrphanAnnots(const TSeq_idSet&, TTSE_LockMatchSet&, const ncbi::objects::SAnnotSelector*, ncbi::objects::CDataLoader::TProcessedNAs*)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/data_source.cpp:932:9:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle>*, std::vector<std::pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle> > >’ changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1940:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle>*, std::vector<std::pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle> > >’ changed in GCC 7.1
1940 | std::__final_insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘_FIter std::unique(_FIter, _FIter) [with _FIter = __gnu_cxx::__normal_iterator<pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle>*, vector<pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle> > >]’,
inlined from ‘void ncbi::objects::CDataSource::GetTSESetWithOrphanAnnots(const TSeq_idSet&, TTSE_LockMatchSet&, const ncbi::objects::SAnnotSelector*, ncbi::objects::CDataLoader::TProcessedNAs*)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/data_source.cpp:933:21:
/usr/include/c++/12/bits/stl_algo.h:945:27: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle>*, std::vector<std::pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle> > >’ changed in GCC 7.1
945 | return std::__unique(__first, __last,
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
946 | __gnu_cxx::__ops::__iter_equal_to_iter());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = std::pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle>; _Alloc = std::allocator<std::pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle> >]’,
inlined from ‘void ncbi::objects::CDataSource::GetTSESetWithOrphanAnnots(const TSeq_idSet&, TTSE_LockMatchSet&, const ncbi::objects::SAnnotSelector*, ncbi::objects::CDataLoader::TProcessedNAs*)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/data_source.cpp:933:14:
/usr/include/c++/12/bits/stl_vector.h:1561:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle>*, std::vector<std::pair<ncbi::objects::CTSE_Lock, ncbi::objects::CSeq_id_Handle> > >’ changed in GCC 7.1
1561 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/readers/readfeat.cpp: In member function ‘bool ncbi::objects::CFeatureTableReader_Imp::x_AddQualifierToCdregion(ncbi::CRef<ncbi::objects::CSeq_feat>, ncbi::objects::CSeqFeatData&, EQual, const std::string&)’:
/<<PKGBUILDDIR>>/c++/src/objtools/readers/readfeat.cpp:1406:22: warning: catching polymorphic type ‘class ncbi::CStringException’ by value [-Wcatch-value=]
1406 | } catch( CStringException ) {
| ^~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/scope_impl.hpp:47,
from /<<PKGBUILDDIR>>/c++/src/objmgr/scope.cpp:46:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/priority.hpp:153:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
153 | auto_ptr<CPriority_I> m_Sub_I;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/scope_impl.hpp:53:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/scope_impl.hpp:53:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/scope_impl.hpp:53:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/objmgr/heap_scope.cpp:43:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/readers/rm_reader.cpp: In member function ‘ncbi::CRef<ncbi::objects::CSeq_feat> ncbi::objects::CRepeatToFeat::operator()(const ncbi::objects::IRepeatRegion&)’:
/<<PKGBUILDDIR>>/c++/src/objtools/readers/rm_reader.cpp:554:44: warning: enum constant in boolean context [-Wint-in-bool-context]
554 | if (fRemoveRedundancy && m_Library &&
| ^~~~~~~~~
Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/prefetch_actions.cpp -o prefetch_actions.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/scope.cpp -o scope.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/heap_scope.cpp -o heap_scope.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/scope_impl.cpp -o scope_impl.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/scope_info.cpp -o scope_info.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/tse_handle.cpp -o tse_handle.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/objmgr/scope_impl.cpp:41:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:43:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objmgr/scope_impl.cpp:46:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /usr/include/c++/12/algorithm:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:180,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/readers/wiggle_reader.cpp:35:
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::objects::SValueInfo*, vector<ncbi::objects::SValueInfo> >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::SValueInfo*, std::vector<ncbi::objects::SValueInfo> >’ changed in GCC 7.1
1782 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::objects::SValueInfo*, vector<ncbi::objects::SValueInfo> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::SValueInfo*, std::vector<ncbi::objects::SValueInfo> >’ changed in GCC 7.1
1802 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::SValueInfo*, std::vector<ncbi::objects::SValueInfo> >’ changed in GCC 7.1
In file included from /usr/include/c++/12/bits/stl_algo.h:60:
/usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::objects::SValueInfo*, vector<ncbi::objects::SValueInfo> >; _Distance = int; _Tp = ncbi::objects::SValueInfo; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::SValueInfo*, std::vector<ncbi::objects::SValueInfo> >’ changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/objmgr/scope_impl.cpp:51:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const ncbi::objects::SValueInfo&}; _Tp = ncbi::objects::SValueInfo; _Alloc = std::allocator<ncbi::objects::SValueInfo>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<ncbi::objects::SValueInfo>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
In file included from /<<PKGBUILDDIR>>/c++/src/objmgr/scope_impl.cpp:58:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/priority.hpp:153:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
153 | auto_ptr<CPriority_I> m_Sub_I;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::objects::SValueInfo*, vector<ncbi::objects::SValueInfo> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:1625:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::SValueInfo*, std::vector<ncbi::objects::SValueInfo> >’ changed in GCC 7.1
1625 | __heap_select(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1625:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::SValueInfo*, std::vector<ncbi::objects::SValueInfo> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1625:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::SValueInfo*, std::vector<ncbi::objects::SValueInfo> >’ changed in GCC 7.1
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const ncbi::objects::CRawWiggleRecord&}; _Tp = ncbi::objects::CRawWiggleRecord; _Alloc = std::allocator<ncbi::objects::CRawWiggleRecord>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<ncbi::objects::CRawWiggleRecord>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/scope_impl.hpp:47,
from /<<PKGBUILDDIR>>/c++/src/objmgr/scope_info.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/priority.hpp:153:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
153 | auto_ptr<CPriority_I> m_Sub_I;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/scope_info.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/objmgr/scope_info.cpp:35:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/scope_impl.hpp:47,
from /<<PKGBUILDDIR>>/c++/src/objmgr/tse_handle.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/priority.hpp:153:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
153 | auto_ptr<CPriority_I> m_Sub_I;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objmgr/tse_handle.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objmgr/tse_handle.cpp:34:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ncbi::objects::CRawWiggleRecord; _Alloc = std::allocator<ncbi::objects::CRawWiggleRecord>]’,
inlined from ‘void ncbi::objects::CRawWiggleTrack::AddRecord(ncbi::objects::CRawWiggleRecord)’ at /<<PKGBUILDDIR>>/c++/include/objtools/readers/wiggle_reader.hpp:219:28,
inlined from ‘bool ncbi::objects::CWiggleReader::xReadVariableStepDataRaw(const ncbi::objects::SVarStepInfo&, std::vector<ncbi::objects::CReaderBase::SReaderLine>::const_iterator&, const ncbi::objects::CReaderBase::TReaderData&, ncbi::objects::CRawWiggleTrack&)’ at /<<PKGBUILDDIR>>/c++/src/objtools/readers/wiggle_reader.cpp:257:26:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CRawWiggleRecord*, std::vector<ncbi::objects::CRawWiggleRecord> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ncbi::objects::CRawWiggleRecord; _Alloc = std::allocator<ncbi::objects::CRawWiggleRecord>]’,
inlined from ‘void ncbi::objects::CRawWiggleTrack::AddRecord(ncbi::objects::CRawWiggleRecord)’ at /<<PKGBUILDDIR>>/c++/include/objtools/readers/wiggle_reader.hpp:219:28,
inlined from ‘bool ncbi::objects::CWiggleReader::xReadFixedStepDataRaw(const ncbi::objects::SFixedStepInfo&, std::vector<ncbi::objects::CReaderBase::SReaderLine>::const_iterator&, const ncbi::objects::CReaderBase::TReaderData&, ncbi::objects::CRawWiggleTrack&)’ at /<<PKGBUILDDIR>>/c++/src/objtools/readers/wiggle_reader.cpp:228:26:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CRawWiggleRecord*, std::vector<ncbi::objects::CRawWiggleRecord> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::objects::SValueInfo*, vector<ncbi::objects::SValueInfo> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::SValueInfo*, std::vector<ncbi::objects::SValueInfo> >’ changed in GCC 7.1
1908 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::SValueInfo*, std::vector<ncbi::objects::SValueInfo> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::SValueInfo*, std::vector<ncbi::objects::SValueInfo> >’ changed in GCC 7.1
1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__partial_sort(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::objects::SValueInfo*, vector<ncbi::objects::SValueInfo> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::objects::SValueInfo*, vector<ncbi::objects::SValueInfo> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:1916:27:
/usr/include/c++/12/bits/stl_algo.h:1900:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::SValueInfo*, std::vector<ncbi::objects::SValueInfo> >’ changed in GCC 7.1
1900 | std::__heap_select(__first, __middle, __last, __comp);
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::objects::SValueInfo*, vector<ncbi::objects::SValueInfo> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<ncbi::objects::SValueInfo*, vector<ncbi::objects::SValueInfo> >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from ‘void ncbi::objects::CWiggleReader::xPreprocessValues(ncbi::objects::SWiggleStat&)’ at /<<PKGBUILDDIR>>/c++/src/objtools/readers/wiggle_reader.cpp:301:13:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::SValueInfo*, std::vector<ncbi::objects::SValueInfo> >’ changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::objects::SValueInfo*, vector<ncbi::objects::SValueInfo> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::objects::SValueInfo*, vector<ncbi::objects::SValueInfo> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31,
inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<ncbi::objects::SValueInfo*, vector<ncbi::objects::SValueInfo> >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from ‘void ncbi::objects::CWiggleReader::xPreprocessValues(ncbi::objects::SWiggleStat&)’ at /<<PKGBUILDDIR>>/c++/src/objtools/readers/wiggle_reader.cpp:301:13:
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::SValueInfo*, std::vector<ncbi::objects::SValueInfo> >’ changed in GCC 7.1
1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::SValueInfo*, std::vector<ncbi::objects::SValueInfo> >’ changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ncbi::objects::SValueInfo; _Alloc = std::allocator<ncbi::objects::SValueInfo>]’,
inlined from ‘void ncbi::objects::CWiggleReader::xPreprocessValues(ncbi::objects::SWiggleStat&)’ at /<<PKGBUILDDIR>>/c++/src/objtools/readers/wiggle_reader.cpp:324:21:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::SValueInfo*, std::vector<ncbi::objects::SValueInfo> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ncbi::objects::SValueInfo; _Alloc = std::allocator<ncbi::objects::SValueInfo>]’,
inlined from ‘void ncbi::objects::CWiggleReader::xPreprocessValues(ncbi::objects::SWiggleStat&)’ at /<<PKGBUILDDIR>>/c++/src/objtools/readers/wiggle_reader.cpp:331:29:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::SValueInfo*, std::vector<ncbi::objects::SValueInfo> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/objmgr/seq_map.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/seqloc/Seq_id_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/seqloc/Seq_id.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objects/seq/seq_id_handle.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_map.hpp:41,
from /<<PKGBUILDDIR>>/c++/src/objmgr/seq_map.cpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘ncbi::CRef<ncbi::objects::CSeq_table> ncbi::objects::CWiggleReader::xMakeTable()’ at /<<PKGBUILDDIR>>/c++/src/objtools/readers/wiggle_reader.cpp:501:29:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/scope_impl.hpp:53:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/scope_impl.hpp:53:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ncbi::objects::SValueInfo; _Alloc = std::allocator<ncbi::objects::SValueInfo>]’,
inlined from ‘void ncbi::objects::CWiggleReader::xAddValue(const ncbi::objects::SValueInfo&)’ at /<<PKGBUILDDIR>>/c++/include/objtools/readers/wiggle_reader.hpp:400:31,
inlined from ‘void ncbi::objects::CWiggleReader::xReadFixedStepData(const ncbi::objects::SFixedStepInfo&, std::vector<ncbi::objects::CReaderBase::SReaderLine>::const_iterator&, const ncbi::objects::CReaderBase::TReaderData&)’ at /<<PKGBUILDDIR>>/c++/src/objtools/readers/wiggle_reader.cpp:991:18:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::SValueInfo*, std::vector<ncbi::objects::SValueInfo> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/objmgr/scope_info.cpp:37:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/objmgr/tse_handle.cpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ncbi::objects::SValueInfo; _Alloc = std::allocator<ncbi::objects::SValueInfo>]’,
inlined from ‘void ncbi::objects::CWiggleReader::xAddValue(const ncbi::objects::SValueInfo&)’ at /<<PKGBUILDDIR>>/c++/include/objtools/readers/wiggle_reader.hpp:400:31,
inlined from ‘void ncbi::objects::CWiggleReader::xReadVariableStepData(const ncbi::objects::SVarStepInfo&, std::vector<ncbi::objects::CReaderBase::SReaderLine>::const_iterator&, const ncbi::objects::CReaderBase::TReaderData&)’ at /<<PKGBUILDDIR>>/c++/src/objtools/readers/wiggle_reader.cpp:1058:18:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::SValueInfo*, std::vector<ncbi::objects::SValueInfo> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ncbi::objects::SValueInfo; _Alloc = std::allocator<ncbi::objects::SValueInfo>]’,
inlined from ‘void ncbi::objects::CWiggleReader::xAddValue(const ncbi::objects::SValueInfo&)’ at /<<PKGBUILDDIR>>/c++/include/objtools/readers/wiggle_reader.hpp:400:31,
inlined from ‘bool ncbi::objects::CWiggleReader::xProcessBedData(std::vector<ncbi::objects::CReaderBase::SReaderLine>::const_iterator&, const ncbi::objects::CReaderBase::TReaderData&)’ at /<<PKGBUILDDIR>>/c++/src/objtools/readers/wiggle_reader.cpp:1082:18:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::SValueInfo*, std::vector<ncbi::objects::SValueInfo> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/objmgr/seq_map.cpp:43:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /usr/include/c++/12/bits/stl_algo.h:60,
from /usr/include/c++/12/algorithm:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:180:
/usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle>*, vector<pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle> > >; _Distance = int; _Tp = pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle>; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle>*, std::vector<std::pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle> > >’ changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle>*, vector<pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle> > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle>*, std::vector<std::pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle> > >’ changed in GCC 7.1
1782 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle>*, vector<pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle>*, std::vector<std::pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle> > >’ changed in GCC 7.1
1802 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle>*, std::vector<std::pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle> > >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle>*, vector<pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:1844:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle>*, std::vector<std::pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle> > >’ changed in GCC 7.1
1844 | __final_insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1844:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle>*, std::vector<std::pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle> > >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle>*, std::vector<std::pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle> > >’ changed in GCC 7.1
1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle>*, std::vector<std::pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle> > >’ changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle>*, vector<pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle>*, std::vector<std::pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle> > >’ changed in GCC 7.1
1908 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle>*, std::vector<std::pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle> > >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle>*, std::vector<std::pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle> > >’ changed in GCC 7.1
1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {ncbi::objects::CSeq_id_Handle}; _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator<ncbi::objects::CSeq_id_Handle>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<ncbi::objects::CSeq_id_Handle>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ncbi::objects::CSeq_id_Handle}; _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator<ncbi::objects::CSeq_id_Handle>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator<ncbi::objects::CSeq_id_Handle>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘bool ncbi::objects::CSeqMap::CanResolveRange(ncbi::objects::CScope*, const ncbi::objects::SSeqMapSelector&) const’ at /<<PKGBUILDDIR>>/c++/src/objmgr/seq_map.cpp:1003:47:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘_ForwardIterator std::__unique(_ForwardIterator, _ForwardIterator, _BinaryPredicate) [with _ForwardIterator = __gnu_cxx::__normal_iterator<pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle>*, vector<pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle> > >; _BinaryPredicate = __gnu_cxx::__ops::_Iter_equal_to_iter]’:
/usr/include/c++/12/bits/stl_algo.h:902:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle>*, std::vector<std::pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle> > >’ changed in GCC 7.1
902 | __unique(_ForwardIterator __first, _ForwardIterator __last,
| ^~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:902:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle>*, std::vector<std::pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle> > >’ changed in GCC 7.1
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/usr/include/c++/12/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator, iterator) [with _Tp = std::pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle>; _Alloc = std::allocator<std::pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle> >]’:
/usr/include/c++/12/bits/vector.tcc:189:5: note: parameter passing for argument of type ‘std::vector<std::pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle> >::iterator’ changed in GCC 7.1
189 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc:189:5: note: parameter passing for argument of type ‘std::vector<std::pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle> >::iterator’ changed in GCC 7.1
In file included from /usr/include/c++/12/memory:66,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_stack.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/usr/include/c++/12/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _ForwardIterator = ncbi::objects::CSeq_id_Handle*]’:
/usr/include/c++/12/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
113 | __do_uninit_copy(_InputIterator __first, _InputIterator __last,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >; _ForwardIterator = ncbi::objects::CSeq_id_Handle*; bool _TrivialValueTypes = false]’,
inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _ForwardIterator = ncbi::objects::CSeq_id_Handle*]’ at /usr/include/c++/12/bits/stl_uninitialized.h:185:15,
inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _ForwardIterator = ncbi::objects::CSeq_id_Handle*; _Tp = ncbi::objects::CSeq_id_Handle]’ at /usr/include/c++/12/bits/stl_uninitialized.h:372:37,
inlined from ‘std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >; _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator<ncbi::objects::CSeq_id_Handle>]’ at /usr/include/c++/12/bits/stl_vector.h:1617:35,
inlined from ‘std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator<ncbi::objects::CSeq_id_Handle>]’ at /usr/include/c++/12/bits/vector.tcc:232:44,
inlined from ‘void ncbi::objects::CBioseq_ScopeInfo::SetResolved(ncbi::objects::CTSE_ScopeInfo&, const TIds&)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/scope_info.cpp:2068:13:
/usr/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
137 | { return std::__do_uninit_copy(__first, __last, __result); }
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >; _ForwardIterator = ncbi::objects::CSeq_id_Handle*; bool _TrivialValueTypes = false]’,
inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _ForwardIterator = ncbi::objects::CSeq_id_Handle*]’ at /usr/include/c++/12/bits/stl_uninitialized.h:185:15,
inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _ForwardIterator = ncbi::objects::CSeq_id_Handle*; _Tp = ncbi::objects::CSeq_id_Handle]’ at /usr/include/c++/12/bits/stl_uninitialized.h:372:37,
inlined from ‘std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator<ncbi::objects::CSeq_id_Handle>]’ at /usr/include/c++/12/bits/stl_vector.h:601:31,
inlined from ‘ncbi::objects::CBioseq_ScopeInfo::CBioseq_ScopeInfo(ncbi::objects::CTSE_ScopeInfo&, const TIds&)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/scope_info.cpp:2034:7:
/usr/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
137 | { return std::__do_uninit_copy(__first, __last, __result); }
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/objmgr/seq_map_ci.cpp:40:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/seqloc/Seq_id_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/seqloc/Seq_id.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objects/seq/seq_id_handle.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_map.hpp:41,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_map_ci.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/objmgr/seq_map_ci.cpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
eat.cpp -o readfeat.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/objtools/readers/rm_reader.cpp -o rm_reader.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/objtools/readers/wiggle_reader.cpp -o wiggle_reader.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/objtools/readers/gff3_reader.cpp -o gff3_reader.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/objtools/readers/gtf_reader.cpp -o gtf_reader.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/objtools/readers/gff3_location_merger.cpp -o gff3_location_merger.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/objtools/readers/gtf_location_merger.cpp -o gtf_location_merger.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-mIn file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const ncbi::objects::CSeq_id_Handle&}; _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator<ncbi::objects::CSeq_id_Handle>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<ncbi::objects::CSeq_id_Handle>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator<ncbi::objects::CSeq_id_Handle>]’,
inlined from ‘bool ncbi::objects::CBioseq_ScopeInfo::AddId(const ncbi::objects::CSeq_id_Handle&)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/scope_info.cpp:2151:20:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator<ncbi::objects::CSeq_id_Handle>]’,
inlined from ‘void ncbi::objects::CSynonymsSet::AddSynonym(const ncbi::objects::CSeq_id_Handle&)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/scope_info.cpp:2221:22:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/scope_impl.hpp:47,
from /<<PKGBUILDDIR>>/c++/src/objmgr/seq_entry_ci.cpp:37:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/priority.hpp:153:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
153 | auto_ptr<CPriority_I> m_Sub_I;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_entry_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/objmgr/seq_entry_ci.cpp:34:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle>}; _Tp = std::pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle>; _Alloc = std::allocator<std::pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle> >]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<std::pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle> >::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair<ncbi::CRef<ncbi::objects::CTSE_ScopeInfo, ncbi::CObjectCounterLocker>, ncbi::objects::CSeq_id_Handle>}; _Tp = std::pair<ncbi::CRef<ncbi::objects::CTSE_ScopeInfo>, ncbi::objects::CSeq_id_Handle>; _Alloc = std::allocator<std::pair<ncbi::CRef<ncbi::objects::CTSE_ScopeInfo>, ncbi::objects::CSeq_id_Handle> >]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<std::pair<ncbi::CRef<ncbi::objects::CTSE_ScopeInfo>, ncbi::objects::CSeq_id_Handle> >::iterator’ changed in GCC 7.1
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<ncbi::CRef<ncbi::objects::CTSE_ScopeInfo, ncbi::CObjectCounterLocker>, ncbi::objects::CSeq_id_Handle>}; _Tp = std::pair<ncbi::CRef<ncbi::objects::CTSE_ScopeInfo>, ncbi::objects::CSeq_id_Handle>; _Alloc = std::allocator<std::pair<ncbi::CRef<ncbi::objects::CTSE_ScopeInfo>, ncbi::objects::CSeq_id_Handle> >]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair<ncbi::CRef<ncbi::objects::CTSE_ScopeInfo>, ncbi::objects::CSeq_id_Handle>; _Alloc = std::allocator<std::pair<ncbi::CRef<ncbi::objects::CTSE_ScopeInfo>, ncbi::objects::CSeq_id_Handle> >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void ncbi::objects::CScope_Impl::x_AddTSESetWithAnnots(TTSE_LockMatchSet&, TTSE_MatchSet*, const TTSE_LockMatchSet_DS&, ncbi::objects::CDataSource_ScopeInfo&)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/scope_impl.cpp:2412:34:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<ncbi::CRef<ncbi::objects::CTSE_ScopeInfo>, ncbi::objects::CSeq_id_Handle>*, std::vector<std::pair<ncbi::CRef<ncbi::objects::CTSE_ScopeInfo>, ncbi::objects::CSeq_id_Handle> > >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle>}; _Tp = std::pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle>; _Alloc = std::allocator<std::pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle> >]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle>; _Alloc = std::allocator<std::pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle> >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void ncbi::objects::CScope_Impl::x_AddTSESetWithAnnots(TTSE_LockMatchSet&, TTSE_MatchSet*, const TTSE_LockMatchSet_DS&, ncbi::objects::CDataSource_ScopeInfo&)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/scope_impl.cpp:2415:23:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle>*, std::vector<std::pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle> > >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle>*, vector<pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle>*, vector<pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle> > >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from ‘void ncbi::objects::CScope_Impl::x_GetTSESetWithBioseqAnnots(TTSE_LockMatchSet&, ncbi::objects::CBioseq_ScopeInfo&, const ncbi::objects::SAnnotSelector*)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/scope_impl.cpp:2565:9:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle>*, std::vector<std::pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle> > >’ changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1940:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle>*, std::vector<std::pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle> > >’ changed in GCC 7.1
1940 | std::__final_insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘_FIter std::unique(_FIter, _FIter) [with _FIter = __gnu_cxx::__normal_iterator<pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle>*, vector<pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle> > >]’,
inlined from ‘void ncbi::objects::CScope_Impl::x_GetTSESetWithBioseqAnnots(TTSE_LockMatchSet&, ncbi::objects::CBioseq_ScopeInfo&, const ncbi::objects::SAnnotSelector*)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/scope_impl.cpp:2566:22:
/usr/include/c++/12/bits/stl_algo.h:945:27: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle>*, std::vector<std::pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle> > >’ changed in GCC 7.1
945 | return std::__unique(__first, __last,
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
946 | __gnu_cxx::__ops::__iter_equal_to_iter());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = std::pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle>; _Alloc = std::allocator<std::pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle> >]’,
inlined from ‘void ncbi::objects::CScope_Impl::x_GetTSESetWithBioseqAnnots(TTSE_LockMatchSet&, ncbi::objects::CBioseq_ScopeInfo&, const ncbi::objects::SAnnotSelector*)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/scope_impl.cpp:2566:15:
/usr/include/c++/12/bits/stl_vector.h:1561:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle>*, std::vector<std::pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle> > >’ changed in GCC 7.1
1561 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle>*, vector<pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle>*, vector<pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle> > >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from ‘void ncbi::objects::CScope_Impl::x_GetTSESetWithBioseqAnnots(TTSE_LockMatchSet&, TTSE_MatchSet*, ncbi::objects::CBioseq_ScopeInfo&, const ncbi::objects::SAnnotSelector*)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/scope_impl.cpp:2545:9:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle>*, std::vector<std::pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle> > >’ changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1940:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle>*, std::vector<std::pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle> > >’ changed in GCC 7.1
1940 | std::__final_insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘_FIter std::unique(_FIter, _FIter) [with _FIter = __gnu_cxx::__normal_iterator<pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle>*, vector<pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle> > >]’,
inlined from ‘void ncbi::objects::CScope_Impl::x_GetTSESetWithBioseqAnnots(TTSE_LockMatchSet&, TTSE_MatchSet*, ncbi::objects::CBioseq_ScopeInfo&, const ncbi::objects::SAnnotSelector*)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/scope_impl.cpp:2546:22:
/usr/include/c++/12/bits/stl_algo.h:945:27: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle>*, std::vector<std::pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle> > >’ changed in GCC 7.1
945 | return std::__unique(__first, __last,
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
946 | __gnu_cxx::__ops::__iter_equal_to_iter());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = std::pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle>; _Alloc = std::allocator<std::pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle> >]’,
inlined from ‘void ncbi::objects::CScope_Impl::x_GetTSESetWithBioseqAnnots(TTSE_LockMatchSet&, TTSE_MatchSet*, ncbi::objects::CBioseq_ScopeInfo&, const ncbi::objects::SAnnotSelector*)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/scope_impl.cpp:2546:15:
/usr/include/c++/12/bits/stl_vector.h:1561:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle>*, std::vector<std::pair<ncbi::objects::CTSE_Handle, ncbi::objects::CSeq_id_Handle> > >’ changed in GCC 7.1
1561 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/scope_impl.hpp:53:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const ncbi::objects::CBioseq_Handle&}; _Tp = ncbi::objects::CBioseq_Handle; _Alloc = std::allocator<ncbi::objects::CBioseq_Handle>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<ncbi::objects::CBioseq_Handle>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ncbi::objects::CBioseq_Handle; _Alloc = std::allocator<ncbi::objects::CBioseq_Handle>]’,
inlined from ‘void ncbi::objects::CScope_Impl::x_PopulateBioseq_HandleSet(const ncbi::objects::CSeq_entry_Handle&, TBioseq_HandleSet&, ncbi::objects::CSeq_inst_Base::EMol, TBioseqLevelFlag)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/scope_impl.cpp:2670:34:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CBioseq_Handle*, std::vector<ncbi::objects::CBioseq_Handle> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_annot_ci.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/objmgr/seq_annot_ci.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_annot_ci.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/readers/gff2_reader.cpp: In member function ‘bool ncbi::objects::CGff2Reader::xGetStartsOnPlusStrand(ncbi::TSeqPos, const std::vector<std::__cxx11::basic_string<char> >&, bool, std::vector<int>&) const’:
/<<PKGBUILDDIR>>/c++/src/objtools/readers/gff2_reader.cpp:834:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare]
834 | for (auto i=0; i<gapCount; ++i) {
| ~^~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/readers/gff2_reader.cpp: In member function ‘bool ncbi::objects::CGff2Reader::xSetDensegStarts(const std::vector<std::__cxx11::basic_string<char> >&, ncbi::objects::ENa_strand, ncbi::objects::ENa_strand, ncbi::TSeqPos, ncbi::TSeqPos, const ncbi::objects::CGff2Record&, ncbi::objects::CSeq_align_Base::C_Segs::TDenseg&)’:
/<<PKGBUILDDIR>>/c++/src/objtools/readers/gff2_reader.cpp:923:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const unsigned int’} [-Wsign-compare]
923 | for (auto i=0; i<gapCount; ++i) {
| ~^~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/readers/gff2_reader.cpp: In member function ‘bool ncbi::objects::CGff2Reader::xAlignmentSetSpliced_seg(const ncbi::objects::CGff2Record&, ncbi::CRef<ncbi::objects::CSeq_align>)’:
/<<PKGBUILDDIR>>/c++/src/objtools/readers/gff2_reader.cpp:1008:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare]
1008 | for (auto i=0; i<gapCount; ++i) {
| ~^~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_types_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_table_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/objmgr/seq_table_ci.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/readers/vcf_reader.cpp: In member function ‘virtual void ncbi::objects::CVcfReader::xSetFileFormat(const std::string&, ncbi::objects::CSeq_annot&, bool&)’:
/<<PKGBUILDDIR>>/c++/src/objtools/readers/vcf_reader.cpp:332:27: warning: catching polymorphic type ‘class std::exception’ by value [-Wcatch-value=]
332 | catch (std::exception except) {
| ^~~~~~
-iztKfv/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/seq_map.cpp -o seq_map.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/seq_map_ci.cpp -o seq_map_ci.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/seq_entry_ci.cpp -o seq_entry_ci.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/seq_annot_ci.cpp -o seq_annot_ci.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/seq_table_ci.cpp -o seq_table_ci.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/seq_entry_handle.cpp -o seq_entry_handle.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/bioseq_set_handle.cpp -o bioseq_set_handle.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -sIn file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_annot_ci.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/objmgr/seq_entry_handle.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_entry_handle.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/objmgr/seq_entry_handle.cpp:34:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/scope_impl.hpp:47,
from /<<PKGBUILDDIR>>/c++/src/objmgr/seq_entry_handle.cpp:43:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/priority.hpp:153:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
153 | auto_ptr<CPriority_I> m_Sub_I;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/scope_impl.hpp:53:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/objmgr/bioseq_set_handle.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objmgr/bioseq_set_handle.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/objmgr/bioseq_set_handle.cpp:34:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/scope_impl.hpp:47,
from /<<PKGBUILDDIR>>/c++/src/objmgr/bioseq_set_handle.cpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/priority.hpp:153:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
153 | auto_ptr<CPriority_I> m_Sub_I;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/seq_entry_edit_commands.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/objmgr/seq_entry_handle.cpp:48:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/edit_commands_impl.hpp:276:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
276 | auto_ptr<TMemeto> m_Memeto;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/edit_commands_impl.hpp:322:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
322 | auto_ptr<TMemeto> m_Memeto;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/edit_commands_impl.hpp:367:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
367 | auto_ptr<TSeq_descr_Memeto> m_Memeto;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/scope_impl.hpp:53:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/bioseq_set_edit_commands.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objmgr/bioseq_set_handle.cpp:43:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/edit_commands_impl.hpp:276:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
276 | auto_ptr<TMemeto> m_Memeto;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/edit_commands_impl.hpp:322:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
322 | auto_ptr<TMemeto> m_Memeto;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/edit_commands_impl.hpp:367:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
367 | auto_ptr<TSeq_descr_Memeto> m_Memeto;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objmgr/bioseq_handle.cpp:37:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/bioseq_handle.hpp:35,
from /<<PKGBUILDDIR>>/c++/src/objmgr/bioseq_handle.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/scope_impl.hpp:47,
from /<<PKGBUILDDIR>>/c++/src/objmgr/bioseq_handle.cpp:40:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/priority.hpp:153:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
153 | auto_ptr<CPriority_I> m_Sub_I;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
ap=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/objtools/readers/gff_base_columns.cpp -o gff_base_columns.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/objtools/readers/gff2_data.cpp -o gff2_data.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/objtools/readers/gff2_reader.cpp -o gff2_reader.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/objtools/readers/gvf_reader.cpp -o gvf_reader.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/objtools/readers/vcf_reader.cpp -o vcf_reader.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/objtools/readers/psl_reader.cpp -o psl_reader.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-seIn file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/objmgr/seq_annot_handle.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_annot_handle.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/objmgr/seq_annot_handle.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/scope_impl.hpp:53:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/scope_impl.hpp:47,
from /<<PKGBUILDDIR>>/c++/src/objmgr/seq_annot_handle.cpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/priority.hpp:153:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
153 | auto_ptr<CPriority_I> m_Sub_I;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/bioseq_edit_commands.hpp:40,
from /<<PKGBUILDDIR>>/c++/src/objmgr/bioseq_handle.cpp:48:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/edit_commands_impl.hpp:276:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
276 | auto_ptr<TMemeto> m_Memeto;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/edit_commands_impl.hpp:322:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
322 | auto_ptr<TMemeto> m_Memeto;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/edit_commands_impl.hpp:367:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
367 | auto_ptr<TSeq_descr_Memeto> m_Memeto;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/scope_impl.hpp:53:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/seq_annot_edit_commands.hpp:44,
from /<<PKGBUILDDIR>>/c++/src/objmgr/seq_annot_handle.cpp:43:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/edit_commands_impl.hpp:276:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
276 | auto_ptr<TMemeto> m_Memeto;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/edit_commands_impl.hpp:322:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
322 | auto_ptr<TMemeto> m_Memeto;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/edit_commands_impl.hpp:367:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
367 | auto_ptr<TSeq_descr_Memeto> m_Memeto;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/readers/psl_data.cpp: In member function ‘void ncbi::objects::CPslData::Initialize(const ncbi::objects::CReaderBase::TReaderLine&)’:
/<<PKGBUILDDIR>>/c++/src/objtools/readers/psl_data.cpp:144:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
144 | if (mBlockCount != mBlockSizes.size()) {
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/readers/psl_data.cpp:150:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
150 | if (mBlockCount != mBlockStartsQ.size()) {
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/readers/psl_data.cpp:156:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
156 | if (mBlockCount != mBlockStartsT.size()) {
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objtools/readers/bed_autosql.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objtools/readers/bed_reader.cpp:47:
/<<PKGBUILDDIR>>/c++/src/objtools/readers/bed_autosql_standard.hpp: In member function ‘bool ncbi::objects::CAutoSqlStandardFields::ContainsInfo() const’:
/<<PKGBUILDDIR>>/c++/src/objtools/readers/bed_autosql_standard.hpp:92:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
91 | return (mColChrom + mColSeqStart + mColSeqStop + mColStrand +
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
92 | mColName + mColScore != -6);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/readers/bed_reader.cpp: In member function ‘virtual bool ncbi::objects::CBedReader::xDetermineLikelyColumnCount(ncbi::objects::CLinePreBuffer&, ncbi::objects::ILineErrorListener*)’:
/<<PKGBUILDDIR>>/c++/src/objtools/readers/bed_reader.cpp:484:35: warning: comparison of integer expressions of different signedness: ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
484 | if (blockSizes.size() != blockCount) {
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/readers/bed_reader.cpp:505:36: warning: comparison of integer expressions of different signedness: ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
505 | if (blockStarts.size() != blockCount) {
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_types_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/align_ci.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/objmgr/align_ci.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/align_ci.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/objmgr/data_loader.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/src/objtools/readers/bed_autosql.cpp:40:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/objtools/readers/bed_autosql.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objtools/readers/bed_autosql.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objtools/readers/bed_autosql.cpp:41:
/<<PKGBUILDDIR>>/c++/src/objtools/readers/bed_autosql_standard.hpp: In member function ‘bool ncbi::objects::CAutoSqlStandardFields::ContainsInfo() const’:
/<<PKGBUILDDIR>>/c++/src/objtools/readers/bed_autosql_standard.hpp:92:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
91 | return (mColChrom + mColSeqStart + mColSeqStop + mColStrand +
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
92 | mColName + mColScore != -6);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~
pecs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/bioseq_handle.cpp -o bioseq_handle.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/seq_annot_handle.cpp -o seq_annot_handle.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/align_ci.cpp -o align_ci.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/data_loader.cpp -o data_loader.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/handle_range.cpp -o handle_range.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/objmgr_exception.cpp -o objmgr_exception.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<BUILDDIR>>/ncbi-blasIn file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/src/objtools/readers/bed_autosql_standard.cpp:40:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/objtools/readers/bed_autosql_standard.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objtools/readers/bed_autosql_standard.cpp:41:
/<<PKGBUILDDIR>>/c++/src/objtools/readers/bed_autosql_standard.hpp: In member function ‘bool ncbi::objects::CAutoSqlStandardFields::ContainsInfo() const’:
/<<PKGBUILDDIR>>/c++/src/objtools/readers/bed_autosql_standard.hpp:92:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
91 | return (mColChrom + mColSeqStart + mColSeqStop + mColStrand +
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
92 | mColName + mColScore != -6);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/readers/bed_autosql_standard.cpp: In member function ‘bool ncbi::objects::CAutoSqlStandardFields::SetLocation(const ncbi::objects::CBedColumnData&, int, ncbi::objects::CSeq_feat&, ncbi::objects::CReaderMessageHandler&) const’:
/<<PKGBUILDDIR>>/c++/src/objtools/readers/bed_autosql_standard.cpp:127:20: warning: comparison of integer expressions of different signedness: ‘const size_t’ {aka ‘const unsigned int’} and ‘int’ [-Wsign-compare]
127 | if (mColStrand == -1) {
| ~~~~~~~~~~~^~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/readers/bed_autosql_standard.cpp: In member function ‘bool ncbi::objects::CAutoSqlStandardFields::SetTitle(const ncbi::objects::CBedColumnData&, int, ncbi::objects::CSeq_feat&, ncbi::objects::CReaderMessageHandler&) const’:
/<<PKGBUILDDIR>>/c++/src/objtools/readers/bed_autosql_standard.cpp:162:19: warning: comparison of integer expressions of different signedness: ‘const size_t’ {aka ‘const unsigned int’} and ‘int’ [-Wsign-compare]
162 | if (mColChrom == -1) {
| ~~~~~~~~~~^~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/readers/bed_autosql_standard.cpp: In member function ‘bool ncbi::objects::CAutoSqlStandardFields::Validate(ncbi::objects::CReaderMessageHandler&) const’:
/<<PKGBUILDDIR>>/c++/src/objtools/readers/bed_autosql_standard.cpp:176:19: warning: comparison of integer expressions of different signedness: ‘const size_t’ {aka ‘const unsigned int’} and ‘int’ [-Wsign-compare]
176 | if (mColChrom == -1 || mColSeqStart == -1 || mColSeqStop == -1) {
| ~~~~~~~~~~^~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/readers/bed_autosql_standard.cpp:176:43: warning: comparison of integer expressions of different signedness: ‘const size_t’ {aka ‘const unsigned int’} and ‘int’ [-Wsign-compare]
176 | if (mColChrom == -1 || mColSeqStart == -1 || mColSeqStop == -1) {
| ~~~~~~~~~~~~~^~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/readers/bed_autosql_standard.cpp:176:66: warning: comparison of integer expressions of different signedness: ‘const size_t’ {aka ‘const unsigned int’} and ‘int’ [-Wsign-compare]
176 | if (mColChrom == -1 || mColSeqStart == -1 || mColSeqStop == -1) {
| ~~~~~~~~~~~~^~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/readers/bed_autosql_standard.cpp: In member function ‘void ncbi::objects::CAutoSqlStandardFields::Dump(std::ostream&) const’:
/<<PKGBUILDDIR>>/c++/src/objtools/readers/bed_autosql_standard.cpp:194:19: warning: comparison of integer expressions of different signedness: ‘const size_t’ {aka ‘const unsigned int’} and ‘int’ [-Wsign-compare]
194 | if (mColChrom != -1) {
| ~~~~~~~~~~^~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/readers/bed_autosql_standard.cpp:197:22: warning: comparison of integer expressions of different signedness: ‘const size_t’ {aka ‘const unsigned int’} and ‘int’ [-Wsign-compare]
197 | if (mColSeqStart != -1) {
| ~~~~~~~~~~~~~^~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/readers/bed_autosql_standard.cpp:200:21: warning: comparison of integer expressions of different signedness: ‘const size_t’ {aka ‘const unsigned int’} and ‘int’ [-Wsign-compare]
200 | if (mColSeqStop != -1) {
| ~~~~~~~~~~~~^~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/readers/bed_autosql_standard.cpp:203:20: warning: comparison of integer expressions of different signedness: ‘const size_t’ {aka ‘const unsigned int’} and ‘int’ [-Wsign-compare]
203 | if (mColStrand != -1) {
| ~~~~~~~~~~~^~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/readers/bed_autosql_standard.cpp:206:18: warning: comparison of integer expressions of different signedness: ‘const size_t’ {aka ‘const unsigned int’} and ‘int’ [-Wsign-compare]
206 | if (mColName != -1) {
| ~~~~~~~~~^~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/readers/bed_autosql_standard.cpp:209:19: warning: comparison of integer expressions of different signedness: ‘const size_t’ {aka ‘const unsigned int’} and ‘int’ [-Wsign-compare]
209 | if (mColScore != -1) {
| ~~~~~~~~~~^~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objmgr/data_loader.cpp:40:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/objmgr/data_loader.cpp:44:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
curity -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/objtools/readers/psl_data.cpp -o psl_data.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/objtools/readers/bed_reader.cpp -o bed_reader.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/objtools/readers/bed_autosql.cpp -o bed_autosql.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/objtools/readers/bed_autosql_standard.cpp -o bed_autosql_standard.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/objtools/readers/bed_autosql_custom.cpp -o bed_autosql_custom.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/objtools/readers/bed_column_data.cpp -o bed_column_data.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOUIn file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/src/objtools/readers/bed_autosql_custom.cpp:40:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/objtools/readers/bed_autosql_custom.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objtools/readers/bed_autosql.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objtools/readers/bed_autosql_custom.cpp:41:
/<<PKGBUILDDIR>>/c++/src/objtools/readers/bed_autosql_standard.hpp: In member function ‘bool ncbi::objects::CAutoSqlStandardFields::ContainsInfo() const’:
/<<PKGBUILDDIR>>/c++/src/objtools/readers/bed_autosql_standard.hpp:92:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
91 | return (mColChrom + mColSeqStart + mColSeqStop + mColStrand +
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
92 | mColName + mColScore != -6);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objmgr/object_manager.cpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:45:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/scope_impl.hpp:47,
from /<<PKGBUILDDIR>>/c++/src/objmgr/object_manager.cpp:41:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/priority.hpp:153:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
153 | auto_ptr<CPriority_I> m_Sub_I;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objmgr/handle_range_map.cpp:44:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/seqloc/Na_strand_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/seqloc/Na_strand.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/handle_range.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/handle_range_map.hpp:35,
from /<<PKGBUILDDIR>>/c++/src/objmgr/handle_range_map.cpp:35:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/scope_impl.hpp:53:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objmgr/seq_vector.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/bioseq_handle.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/objtools/readers/ucscregion_reader.cpp:35:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/objmgr/seq_vector.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair<ncbi::objects::CSeq_id_Handle, bool>}; _Tp = std::pair<ncbi::objects::CSeq_id_Handle, bool>; _Alloc = std::allocator<std::pair<ncbi::objects::CSeq_id_Handle, bool> >]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<std::pair<ncbi::objects::CSeq_id_Handle, bool> >::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<ncbi::objects::CSeq_id_Handle, bool>}; _Tp = std::pair<ncbi::objects::CSeq_id_Handle, bool>; _Alloc = std::allocator<std::pair<ncbi::objects::CSeq_id_Handle, bool> >]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair<ncbi::objects::CSeq_id_Handle, bool>; _Alloc = std::allocator<std::pair<ncbi::objects::CSeq_id_Handle, bool> >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘int ncbi::objects::CMasterSeqSegments::AddSegment(const ncbi::objects::CSeq_id_Handle&, bool)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/handle_range_map.cpp:372:23:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<ncbi::objects::CSeq_id_Handle, bool>*, std::vector<std::pair<ncbi::objects::CSeq_id_Handle, bool> > >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objmgr/seq_vector_ci.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/bioseq_handle.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/readers/source_mod_parser.cpp: In function ‘void ncbi::objects::s_GetPrimerInfo(const CSourceModParser::SMod*, const CSourceModParser::SMod*, std::vector<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> > >&)’:
/<<PKGBUILDDIR>>/c++/src/objtools/readers/source_mod_parser.cpp:877:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare]
877 | for (int i=0; i<num_reactions; ++i) {
| ~^~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/readers/source_mod_parser.cpp:878:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare]
878 | const string name = (i<num_names) ? names[i] : "";
| ~^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/readers/source_mod_parser.cpp:879:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare]
879 | const string seq = (i<num_seqs) ? seqs[i] : "";
| ~^~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/readers/source_mod_parser.cpp: In member function ‘void ncbi::objects::CSourceModParser::x_AddPCRPrimers(ncbi::CAutoInitRef<ncbi::objects::CPCRReactionSet>&)’:
/<<PKGBUILDDIR>>/c++/src/objtools/readers/source_mod_parser.cpp:912:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
912 | for (auto i=0; i<num_fwd_primer_info; ++i) {
| ~^~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/readers/source_mod_parser.cpp:922:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
922 | for (int i=0; i<diff; ++i) {
| ~^~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/readers/source_mod_parser.cpp:928:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
928 | for (int i=diff; i<num_fwd_primer_info; ++i) {
| ~^~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/readers/source_mod_parser.cpp:937:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
937 | for (int i=0; i<num_fwd_primer_info; ++i) {
| ~^~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/readers/source_mod_parser.cpp:944:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
944 | for (int i=num_fwd_primer_info; i<num_rev_primer_info; ++i) {
| ~^~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/objmgr/seqdesc_ci.cpp:41:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/seq/Seqdesc_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/seq/Seqdesc.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objects/seq/Seq_descr.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_descr_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seqdesc_ci.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objmgr/seqdesc_ci.cpp:34:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
RCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/objtools/readers/best_feat_finder.cpp -o best_feat_finder.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/objtools/readers/source_mod_parser.cpp -o source_mod_parser.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/objtools/readers/fasta_exception.cpp -o fasta_exception.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/objtools/readers/agp_converter.cpp -o agp_converter.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/objtools/readers/ucscregion_reader.cpp -o ucscregion_reader.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/objtools/readers/struct_cmt_reader.cpp -o struct_cmt_reader.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/t+-2.12.0+ds/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/handle_range_map.cpp -o handle_range_map.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/object_manager.cpp -o object_manager.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/seq_vector.cpp -o seq_vector.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/seq_vector_ci.cpp -o seq_vector_ci.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/seqdesc_ci.cpp -o seqdesc_ci.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/tse_split_info.cpp -o tse_split_info.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/tse_chunk_info.cpp -o tse_chunk_info.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -WfoIn file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/mod_reader.hpp:35,
from /<<PKGBUILDDIR>>/c++/src/objtools/readers/mod_reader.cpp:43:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/readers/mod_reader.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objmgr/tse_split_info.cpp:37:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_split_info.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objmgr/tse_split_info.cpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objmgr/tse_split_info.cpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/objmgr/bioseq_ci.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objmgr/bioseq_ci.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objmgr/bioseq_ci.cpp:34:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_types_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/objmgr/annot_type_index.cpp:37:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbithr_conf.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimtx.hpp:62,
from /<<PKGBUILDDIR>>/c++/src/objmgr/annot_type_index.cpp:34:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objmgr/tse_chunk_info.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_chunk_info.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objmgr/tse_chunk_info.cpp:35:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/scope_impl.hpp:47,
from /<<PKGBUILDDIR>>/c++/src/objmgr/bioseq_ci.cpp:37:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/priority.hpp:153:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
153 | auto_ptr<CPriority_I> m_Sub_I;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objmgr/tse_chunk_info.cpp:43:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objmgr/annot_type_index.cpp:41:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/scope_impl.hpp:53:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/mod_reader.hpp:35,
from /<<PKGBUILDDIR>>/c++/src/objtools/readers/descr_mod_apply.cpp:66:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/readers/descr_mod_apply.cpp:34:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/mod_reader.hpp:35,
from /<<PKGBUILDDIR>>/c++/src/objtools/readers/feature_mod_apply.cpp:45:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/readers/feature_mod_apply.cpp:34:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /usr/include/c++/12/bits/stl_algo.h:60,
from /usr/include/c++/12/algorithm:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:180:
/usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<ncbi::objects::CSeq_id_Handle, int>*, vector<pair<ncbi::objects::CSeq_id_Handle, int> > >; _Distance = int; _Tp = pair<ncbi::objects::CSeq_id_Handle, int>; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<ncbi::objects::CSeq_id_Handle, int>*, std::vector<std::pair<ncbi::objects::CSeq_id_Handle, int> > >’ changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<ncbi::objects::CSeq_id_Handle, int>*, vector<pair<ncbi::objects::CSeq_id_Handle, int> > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<ncbi::objects::CSeq_id_Handle, int>*, std::vector<std::pair<ncbi::objects::CSeq_id_Handle, int> > >’ changed in GCC 7.1
1782 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<ncbi::objects::CSeq_id_Handle, int>*, vector<pair<ncbi::objects::CSeq_id_Handle, int> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<ncbi::objects::CSeq_id_Handle, int>*, std::vector<std::pair<ncbi::objects::CSeq_id_Handle, int> > >’ changed in GCC 7.1
1802 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<ncbi::objects::CSeq_id_Handle, int>*, std::vector<std::pair<ncbi::objects::CSeq_id_Handle, int> > >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<ncbi::objects::CSeq_id_Handle, int>*, vector<pair<ncbi::objects::CSeq_id_Handle, int> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<ncbi::objects::CSeq_id_Handle, int>*, std::vector<std::pair<ncbi::objects::CSeq_id_Handle, int> > >’ changed in GCC 7.1
1908 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<ncbi::objects::CSeq_id_Handle, int>*, std::vector<std::pair<ncbi::objects::CSeq_id_Handle, int> > >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<ncbi::objects::CSeq_id_Handle, int>*, std::vector<std::pair<ncbi::objects::CSeq_id_Handle, int> > >’ changed in GCC 7.1
1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<ncbi::objects::CSeq_id_Handle, int>*, vector<pair<ncbi::objects::CSeq_id_Handle, int> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<pair<ncbi::objects::CSeq_id_Handle, int>*, vector<pair<ncbi::objects::CSeq_id_Handle, int> > >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from ‘std::vector<std::pair<ncbi::objects::CSeq_id_Handle, int> >::const_iterator ncbi::objects::CTSE_Split_Info::x_FindChunk(const ncbi::objects::CSeq_id_Handle&) const’ at /<<PKGBUILDDIR>>/c++/src/objmgr/tse_split_info.cpp:389:13:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<ncbi::objects::CSeq_id_Handle, int>*, std::vector<std::pair<ncbi::objects::CSeq_id_Handle, int> > >’ changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<ncbi::objects::CSeq_id_Handle, int>*, vector<pair<ncbi::objects::CSeq_id_Handle, int> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<ncbi::objects::CSeq_id_Handle, int>*, vector<pair<ncbi::objects::CSeq_id_Handle, int> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31,
inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<pair<ncbi::objects::CSeq_id_Handle, int>*, vector<pair<ncbi::objects::CSeq_id_Handle, int> > >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from ‘std::vector<std::pair<ncbi::objects::CSeq_id_Handle, int> >::const_iterator ncbi::objects::CTSE_Split_Info::x_FindChunk(const ncbi::objects::CSeq_id_Handle&) const’ at /<<PKGBUILDDIR>>/c++/src/objmgr/tse_split_info.cpp:389:13:
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<ncbi::objects::CSeq_id_Handle, int>*, std::vector<std::pair<ncbi::objects::CSeq_id_Handle, int> > >’ changed in GCC 7.1
1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<ncbi::objects::CSeq_id_Handle, int>*, std::vector<std::pair<ncbi::objects::CSeq_id_Handle, int> > >’ changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/bits/stl_algo.h:60,
from /usr/include/c++/12/algorithm:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:180:
/usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _Distance = int; _Tp = ncbi::objects::CSeq_id_Handle; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
1782 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair<ncbi::objects::CSeq_id_Handle, int>}; _Tp = std::pair<ncbi::objects::CSeq_id_Handle, int>; _Alloc = std::allocator<std::pair<ncbi::objects::CSeq_id_Handle, int> >]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<std::pair<ncbi::objects::CSeq_id_Handle, int> >::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
1802 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<ncbi::objects::CSeq_id_Handle, int>}; _Tp = std::pair<ncbi::objects::CSeq_id_Handle, int>; _Alloc = std::allocator<std::pair<ncbi::objects::CSeq_id_Handle, int> >]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair<ncbi::objects::CSeq_id_Handle, int>; _Alloc = std::allocator<std::pair<ncbi::objects::CSeq_id_Handle, int> >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void ncbi::objects::CTSE_Split_Info::x_SetContainedId(const TBioseqId&, TChunkId, bool)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/tse_split_info.cpp:321:30:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<ncbi::objects::CSeq_id_Handle, int>*, std::vector<std::pair<ncbi::objects::CSeq_id_Handle, int> > >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
1908 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from ‘void ncbi::objects::CTSE_Chunk_Info::x_SplitAttach(ncbi::objects::CTSE_Split_Info&)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/tse_chunk_info.cpp:132:13:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31,
inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from ‘void ncbi::objects::CTSE_Chunk_Info::x_SplitAttach(ncbi::objects::CTSE_Split_Info&)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/tse_chunk_info.cpp:132:13:
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const std::pair<unsigned int, std::pair<ncbi::objects::CSeq_id_Handle, int> >&}; _Tp = std::pair<unsigned int, std::pair<ncbi::objects::CSeq_id_Handle, int> >; _Alloc = std::allocator<std::pair<unsigned int, std::pair<ncbi::objects::CSeq_id_Handle, int> > >]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<std::pair<unsigned int, std::pair<ncbi::objects::CSeq_id_Handle, int> > >::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::pair<unsigned int, std::pair<ncbi::objects::CSeq_id_Handle, int> >; _Alloc = std::allocator<std::pair<unsigned int, std::pair<ncbi::objects::CSeq_id_Handle, int> > >]’,
inlined from ‘void ncbi::objects::CTSE_Chunk_Info::x_AddDescInfo(const TDescInfo&)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/tse_chunk_info.cpp:315:26:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<unsigned int, std::pair<ncbi::objects::CSeq_id_Handle, int> >*, std::vector<std::pair<unsigned int, std::pair<ncbi::objects::CSeq_id_Handle, int> > > >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const ncbi::objects::CSeq_id_Handle&}; _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator<ncbi::objects::CSeq_id_Handle>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<ncbi::objects::CSeq_id_Handle>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator<ncbi::objects::CSeq_id_Handle>]’,
inlined from ‘void ncbi::objects::CTSE_Chunk_Info::x_AddAssemblyInfo(const TBioseqId&)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/tse_chunk_info.cpp:324:30:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator<ncbi::objects::CSeq_id_Handle>]’,
inlined from ‘void ncbi::objects::CTSE_Chunk_Info::x_AddBioseqId(const TBioseqId&)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/tse_chunk_info.cpp:364:26:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const std::pair<ncbi::objects::CSeq_id_Handle, int>&}; _Tp = std::pair<ncbi::objects::CSeq_id_Handle, int>; _Alloc = std::allocator<std::pair<ncbi::objects::CSeq_id_Handle, int> >]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<std::pair<ncbi::objects::CSeq_id_Handle, int> >::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::pair<ncbi::objects::CSeq_id_Handle, int>; _Alloc = std::allocator<std::pair<ncbi::objects::CSeq_id_Handle, int> >]’,
inlined from ‘void ncbi::objects::CTSE_Chunk_Info::x_AddAnnotPlace(const TPlace&)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/tse_chunk_info.cpp:345:28:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<ncbi::objects::CSeq_id_Handle, int>*, std::vector<std::pair<ncbi::objects::CSeq_id_Handle, int> > >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/12/memory:66,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_stack.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:42:
/usr/include/c++/12/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> >*, vector<pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> > > >; _ForwardIterator = pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> >*]’:
/usr/include/c++/12/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> >*, std::vector<std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> > > >’ changed in GCC 7.1
113 | __do_uninit_copy(_InputIterator __first, _InputIterator __last,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> >*, std::vector<std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> > > >’ changed in GCC 7.1
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> >}; _Tp = std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> >; _Alloc = std::allocator<std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> > >]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> > >::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> >}; _Tp = std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> >; _Alloc = std::allocator<std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> > >]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> >; _Alloc = std::allocator<std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> > >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void ncbi::objects::CTSE_Chunk_Info::x_AddAnnotType(const ncbi::objects::CAnnotName&, const ncbi::objects::SAnnotTypeSelector&, const TLocationId&, const TLocationRange&)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/tse_chunk_info.cpp:384:18:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> >*, std::vector<std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> > > >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> >&}; _Tp = std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> >; _Alloc = std::allocator<std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> > >]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> > >::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> >; _Alloc = std::allocator<std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> > >]’,
inlined from ‘void ncbi::objects::CTSE_Chunk_Info::x_AddAnnotType(const ncbi::objects::CAnnotName&, const ncbi::objects::SAnnotTypeSelector&, const TLocationId&)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/tse_chunk_info.cpp:395:18:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> >*, std::vector<std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> > > >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> >*, std::vector<std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> > > >; _Tp = std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> >; _Alloc = std::allocator<std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> > >]’:
/usr/include/c++/12/bits/vector.tcc:739:7: note: parameter passing for argument of type ‘std::vector<std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> > >::iterator’ changed in GCC 7.1
739 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc:739:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> >*, std::vector<std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> > > >’ changed in GCC 7.1
/usr/include/c++/12/bits/vector.tcc:739:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> >*, std::vector<std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> > > >’ changed in GCC 7.1
In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> >*, std::vector<std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> > > >; _ForwardIterator = std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> >*; bool _TrivialValueTypes = false]’,
inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> >*, vector<pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> > > >; _ForwardIterator = pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> >*]’ at /usr/include/c++/12/bits/stl_uninitialized.h:185:15,
inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> >*, vector<pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> > > >; _ForwardIterator = pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> >*; _Tp = pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> >]’ at /usr/include/c++/12/bits/stl_uninitialized.h:372:37,
inlined from ‘void std::vector<_Tp, _Alloc>::_M_range_insert(iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> >*, std::vector<std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> > > >; _Tp = std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> >; _Alloc = std::allocator<std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> > >]’ at /usr/include/c++/12/bits/vector.tcc:769:34:
/usr/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> >*, std::vector<std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> > > >’ changed in GCC 7.1
137 | { return std::__do_uninit_copy(__first, __last, __result); }
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> >*, std::vector<std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> > > >; _ForwardIterator = std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> >*; bool _TrivialValueTypes = false]’,
inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> >*, vector<pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> > > >; _ForwardIterator = pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> >*]’ at /usr/include/c++/12/bits/stl_uninitialized.h:185:15,
inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> >*, vector<pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> > > >; _ForwardIterator = pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> >*; _Tp = pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> >]’ at /usr/include/c++/12/bits/stl_uninitialized.h:372:37,
inlined from ‘void std::vector<_Tp, _Alloc>::_M_range_insert(iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> >*, std::vector<std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> > > >; _Tp = std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> >; _Alloc = std::allocator<std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> > >]’ at /usr/include/c++/12/bits/vector.tcc:796:38:
/usr/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> >*, std::vector<std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> > > >’ changed in GCC 7.1
137 | { return std::__do_uninit_copy(__first, __last, __result); }
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_dispatch(iterator, _InputIterator, _InputIterator, std::__false_type) [with _InputIterator = __gnu_cxx::__normal_iterator<const std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> >*, std::vector<std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> > > >; _Tp = std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> >; _Alloc = std::allocator<std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> > >]’,
inlined from ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> >*, std::vector<std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> > > >; <template-parameter-2-2> = void; _Tp = std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> >; _Alloc = std::allocator<std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> > >]’ at /usr/include/c++/12/bits/stl_vector.h:1481:22,
inlined from ‘void ncbi::objects::CTSE_Chunk_Info::x_AddAnnotType(const ncbi::objects::CAnnotName&, const ncbi::objects::SAnnotTypeSelector&, const TLocationSet&)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/tse_chunk_info.cpp:405:15:
/usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘std::vector<std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> > >::iterator’ changed in GCC 7.1
1779 | _M_range_insert(__pos, __first, __last,
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
1780 | std::__iterator_category(__first));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> >*, std::vector<std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> > > >’ changed in GCC 7.1
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/objmgr/seq_loc_mapper.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_loc_mapper.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/objmgr/seq_loc_mapper.cpp:34:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_dispatch(iterator, _InputIterator, _InputIterator, std::__false_type) [with _InputIterator = __gnu_cxx::__normal_iterator<const std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> >*, std::vector<std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> > > >; _Tp = std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> >; _Alloc = std::allocator<std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> > >]’,
inlined from ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> >*, std::vector<std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> > > >; <template-parameter-2-2> = void; _Tp = std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> >; _Alloc = std::allocator<std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> > >]’ at /usr/include/c++/12/bits/stl_vector.h:1481:22,
inlined from ‘void ncbi::objects::CTSE_Chunk_Info::x_AddSeq_data(const TLocationSet&)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/tse_chunk_info.cpp:370:22:
/usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘std::vector<std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> > >::iterator’ changed in GCC 7.1
1779 | _M_range_insert(__pos, __first, __last,
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
1780 | std::__iterator_category(__first));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> >*, std::vector<std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> > > >’ changed in GCC 7.1
In file included from /<<PKGBUILDDIR>>/c++/src/objmgr/seq_loc_mapper.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/objtools/readers/mod_reader.cpp -o mod_reader.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/objtools/readers/mod_error.cpp -o mod_error.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/objtools/readers/descr_mod_apply.cpp -o descr_mod_apply.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/objtools/readers/feature_mod_apply.cpp -o feature_mod_apply.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/objtools/readers/mod_to_enum.cpp -o mod_to_enum.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/objtools/readers/message_listener.cpp -o message_listener.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-iIn file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/seq_align_mapper.hpp:42,
from /<<PKGBUILDDIR>>/c++/src/objmgr/seq_align_mapper.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/seqloc/Seq_id_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/seqloc/Seq_id.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objects/seq/seq_id_handle.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/seq_align_mapper.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/src/objtools/readers/message_listener.cpp:36:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/message_listener.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/objtools/readers/message_listener.cpp:35:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objmgr/seq_align_mapper.cpp: In member function ‘virtual ncbi::objects::CSeq_align_Mapper_Base* ncbi::objects::CSeq_align_Mapper::CreateSubAlign(const ncbi::objects::CSpliced_seg&, const ncbi::objects::CSpliced_exon&)’:
/<<PKGBUILDDIR>>/c++/src/objmgr/seq_align_mapper.cpp:466:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
466 | auto_ptr<CSeq_align_Mapper> sub(new CSeq_align_Mapper(GetLocMapper()));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objmgr/annot_collector.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader_factory.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objmgr/data_loader_factory.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader_factory.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objmgr/annot_collector.cpp:43:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objmgr/annot_collector.cpp:46:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /usr/include/c++/12/map:60,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:45,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/usr/include/c++/12/bits/stl_tree.h: In member function ‘std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = ncbi::objects::CSeq_id_Handle; _Val = std::pair<const ncbi::objects::CSeq_id_Handle, std::__cxx11::list<ncbi::CRange<unsigned int> > >; _KeyOfValue = std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle, std::__cxx11::list<ncbi::CRange<unsigned int> > > >; _Compare = std::less<ncbi::objects::CSeq_id_Handle>; _Alloc = std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, std::__cxx11::list<ncbi::CRange<unsigned int> > > >]’:
/usr/include/c++/12/bits/stl_tree.h:2209:5: note: parameter passing for argument of type ‘std::_Rb_tree<ncbi::objects::CSeq_id_Handle, std::pair<const ncbi::objects::CSeq_id_Handle, std::__cxx11::list<ncbi::CRange<unsigned int> > >, std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle, std::__cxx11::list<ncbi::CRange<unsigned int> > > >, std::less<ncbi::objects::CSeq_id_Handle>, std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, std::__cxx11::list<ncbi::CRange<unsigned int> > > > >::const_iterator’ changed in GCC 7.1
2209 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<ncbi::objects::CSeq_id_Handle&&>, std::tuple<>}; _Key = ncbi::objects::CSeq_id_Handle; _Val = std::pair<const ncbi::objects::CSeq_id_Handle, std::__cxx11::list<ncbi::CRange<unsigned int> > >; _KeyOfValue = std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle, std::__cxx11::list<ncbi::CRange<unsigned int> > > >; _Compare = std::less<ncbi::objects::CSeq_id_Handle>; _Alloc = std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, std::__cxx11::list<ncbi::CRange<unsigned int> > > >]’:
/usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree<ncbi::objects::CSeq_id_Handle, std::pair<const ncbi::objects::CSeq_id_Handle, std::__cxx11::list<ncbi::CRange<unsigned int> > >, std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle, std::__cxx11::list<ncbi::CRange<unsigned int> > > >, std::less<ncbi::objects::CSeq_id_Handle>, std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, std::__cxx11::list<ncbi::CRange<unsigned int> > > > >::const_iterator’ changed in GCC 7.1
2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/map:61:
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = ncbi::objects::CSeq_id_Handle; _Tp = std::__cxx11::list<ncbi::CRange<unsigned int> >; _Compare = std::less<ncbi::objects::CSeq_id_Handle>; _Alloc = std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, std::__cxx11::list<ncbi::CRange<unsigned int> > > >]’,
inlined from ‘void ncbi::objects::CSeq_loc_Mapper::x_InitializeSeqMapSingleLevel(ncbi::objects::CSeqMap_CI, const ncbi::objects::CSeq_id*, ESeqMapDirection)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/seq_loc_mapper.cpp:734:58:
/usr/include/c++/12/bits/stl_map.h:530:44: note: parameter passing for argument of type ‘std::_Rb_tree<ncbi::objects::CSeq_id_Handle, std::pair<const ncbi::objects::CSeq_id_Handle, std::__cxx11::list<ncbi::CRange<unsigned int> > >, std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle, std::__cxx11::list<ncbi::CRange<unsigned int> > > >, std::less<ncbi::objects::CSeq_id_Handle>, std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, std::__cxx11::list<ncbi::CRange<unsigned int> > > > >::const_iterator’ changed in GCC 7.1
530 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
531 | std::forward_as_tuple(std::move(__k)),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
532 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objmgr/annot_collector.cpp:53:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
103 | auto_ptr<TIndices> m_Indices;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
154 | auto_ptr<TIndices> m_Indices;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/scope_impl.hpp:47,
from /<<PKGBUILDDIR>>/c++/src/objmgr/annot_collector.cpp:56:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/priority.hpp:153:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
153 | auto_ptr<CPriority_I> m_Sub_I;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = ncbi::objects::CSeq_id_Handle; _Tp = std::__cxx11::list<ncbi::CRange<unsigned int> >; _Compare = std::less<ncbi::objects::CSeq_id_Handle>; _Alloc = std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, std::__cxx11::list<ncbi::CRange<unsigned int> > > >]’,
inlined from ‘ncbi::objects::CSeq_loc_Mapper::CSeq_loc_Mapper(ncbi::objects::CBioseq_Handle, ESeqMapDirection, ncbi::objects::CSeq_loc_Mapper_Options)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/seq_loc_mapper.cpp:272:64:
/usr/include/c++/12/bits/stl_map.h:530:44: note: parameter passing for argument of type ‘std::_Rb_tree<ncbi::objects::CSeq_id_Handle, std::pair<const ncbi::objects::CSeq_id_Handle, std::__cxx11::list<ncbi::CRange<unsigned int> > >, std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle, std::__cxx11::list<ncbi::CRange<unsigned int> > > >, std::less<ncbi::objects::CSeq_id_Handle>, std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, std::__cxx11::list<ncbi::CRange<unsigned int> > > > >::const_iterator’ changed in GCC 7.1
530 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
531 | std::forward_as_tuple(std::move(__k)),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
532 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = ncbi::objects::CSeq_id_Handle; _Tp = std::__cxx11::list<ncbi::CRange<unsigned int> >; _Compare = std::less<ncbi::objects::CSeq_id_Handle>; _Alloc = std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, std::__cxx11::list<ncbi::CRange<unsigned int> > > >]’,
inlined from ‘ncbi::objects::CSeq_loc_Mapper::CSeq_loc_Mapper(size_t, const ncbi::objects::CBioseq_Handle&, ESeqMapDirection, ncbi::objects::CSeq_loc_Mapper_Options)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/seq_loc_mapper.cpp:356:64:
/usr/include/c++/12/bits/stl_map.h:530:44: note: parameter passing for argument of type ‘std::_Rb_tree<ncbi::objects::CSeq_id_Handle, std::pair<const ncbi::objects::CSeq_id_Handle, std::__cxx11::list<ncbi::CRange<unsigned int> > >, std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle, std::__cxx11::list<ncbi::CRange<unsigned int> > > >, std::less<ncbi::objects::CSeq_id_Handle>, std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, std::__cxx11::list<ncbi::CRange<unsigned int> > > > >::const_iterator’ changed in GCC 7.1
530 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
531 | std::forward_as_tuple(std::move(__k)),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
532 | std::tuple<>());
| ~~~~~~~~~~~~~~~
rmat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/bioseq_ci.cpp -o bioseq_ci.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/annot_type_index.cpp -o annot_type_index.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/seq_loc_mapper.cpp -o seq_loc_mapper.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/seq_align_mapper.cpp -o seq_align_mapper.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/annot_collector.cpp -o annot_collector.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/data_loader_factory.cpp -o data_loader_factory.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /build/ncbi-blast+-In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = ncbi::objects::CSeq_id_Handle; _Tp = std::__cxx11::list<ncbi::CRange<unsigned int> >; _Compare = std::less<ncbi::objects::CSeq_id_Handle>; _Alloc = std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, std::__cxx11::list<ncbi::CRange<unsigned int> > > >]’,
inlined from ‘ncbi::objects::CSeq_loc_Mapper::CSeq_loc_Mapper(size_t, const ncbi::objects::CSeqMap&, ESeqMapDirection, const ncbi::objects::CSeq_id*, ncbi::objects::CScope*, ncbi::objects::CSeq_loc_Mapper_Options)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/seq_loc_mapper.cpp:379:64:
/usr/include/c++/12/bits/stl_map.h:530:44: note: parameter passing for argument of type ‘std::_Rb_tree<ncbi::objects::CSeq_id_Handle, std::pair<const ncbi::objects::CSeq_id_Handle, std::__cxx11::list<ncbi::CRange<unsigned int> > >, std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle, std::__cxx11::list<ncbi::CRange<unsigned int> > > >, std::less<ncbi::objects::CSeq_id_Handle>, std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, std::__cxx11::list<ncbi::CRange<unsigned int> > > > >::const_iterator’ changed in GCC 7.1
530 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
531 | std::forward_as_tuple(std::move(__k)),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
532 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = ncbi::objects::CSeq_id_Handle; _Tp = std::__cxx11::list<ncbi::CRange<unsigned int> >; _Compare = std::less<ncbi::objects::CSeq_id_Handle>; _Alloc = std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, std::__cxx11::list<ncbi::CRange<unsigned int> > > >]’,
inlined from ‘ncbi::objects::CSeq_loc_Mapper::CSeq_loc_Mapper(ncbi::objects::CBioseq_Handle, ESeqMapDirection, ncbi::objects::SSeqMapSelector, ncbi::objects::CSeq_loc_Mapper_Options)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/seq_loc_mapper.cpp:314:58:
/usr/include/c++/12/bits/stl_map.h:530:44: note: parameter passing for argument of type ‘std::_Rb_tree<ncbi::objects::CSeq_id_Handle, std::pair<const ncbi::objects::CSeq_id_Handle, std::__cxx11::list<ncbi::CRange<unsigned int> > >, std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle, std::__cxx11::list<ncbi::CRange<unsigned int> > > >, std::less<ncbi::objects::CSeq_id_Handle>, std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, std::__cxx11::list<ncbi::CRange<unsigned int> > > > >::const_iterator’ changed in GCC 7.1
530 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
531 | std::forward_as_tuple(std::move(__k)),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
532 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/mapped_feat.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objmgr/mapped_feat.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/mapped_feat.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
ztKfv/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/line_error.cpp -o line_error.o
/bin/rm -f libxobjread.so .libxobjread.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libxobjread.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC reader_message.o reader_listener.o reader_message_handler.o read_util.o format_guess_ex.o seqid_validate.o acc_pattern.o agp_read.o agp_seq_entry.o agp_util.o agp_validate_reader.o cigar.o fasta.o aln_formats.o alnread.o aln_errors.o aln_error_reporter.o aln_formatguess.o aln_util.o aln_reader.o aln_scanner.o aln_scanner_fastagap.o aln_scanner_clustal.o aln_scanner_nexus.o aln_scanner_phylip.o aln_scanner_sequin.o aln_scanner_multalign.o fasta_aln_builder.o fasta_reader_utils.o getfeature.o gff_reader.o track_data.o reader_data.o microarray_reader.o phrap.o reader_base.o readfeat.o rm_reader.o wiggle_reader.o gff3_reader.o gtf_reader.o gff3_location_merger.o gtf_location_merger.o gff_base_columns.o gff2_data.o gff2_reader.o gvf_reader.o vcf_reader.o psl_reader.o psl_data.o bed_reader.o bed_autosql.o bed_autosql_standard.o bed_autosql_custom.o bed_column_data.o best_feat_finder.o source_mod_parser.o fasta_exception.o agp_converter.o ucscregion_reader.o struct_cmt_reader.o mod_reader.o mod_error.o descr_mod_apply.o feature_mod_apply.o mod_to_enum.o message_listener.o line_error.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lsubmit -lseqset -lseq -lseqcode -lsequtil -lgeneral -lxutil -lxlogging -lpub -lxser -lxncbi -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjread.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libxobjread.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libxobjread.so
/bin/ln -f .xobjread.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.xobjread.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/readers'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/readers'
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/objmgr/seq_feat_handle.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objmgr/seq_feat_handle.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
103 | auto_ptr<TIndices> m_Indices;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
154 | auto_ptr<TIndices> m_Indices;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/scope_impl.hpp:47,
from /<<PKGBUILDDIR>>/c++/src/objmgr/seq_feat_handle.cpp:40:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/priority.hpp:153:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
153 | auto_ptr<CPriority_I> m_Sub_I;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/scope_impl.hpp:53:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/objmgr/seq_graph_handle.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_graph_handle.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/objmgr/seq_graph_handle.cpp:35:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/scope_impl.hpp:47,
from /<<PKGBUILDDIR>>/c++/src/objmgr/seq_graph_handle.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/priority.hpp:153:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
153 | auto_ptr<CPriority_I> m_Sub_I;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/seq_annot_edit_commands.hpp:44,
from /<<PKGBUILDDIR>>/c++/src/objmgr/seq_feat_handle.cpp:43:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/edit_commands_impl.hpp:276:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
276 | auto_ptr<TMemeto> m_Memeto;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/edit_commands_impl.hpp:322:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
322 | auto_ptr<TMemeto> m_Memeto;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/edit_commands_impl.hpp:367:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
367 | auto_ptr<TSeq_descr_Memeto> m_Memeto;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/scope_impl.hpp:53:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/seq_annot_edit_commands.hpp:44,
from /<<PKGBUILDDIR>>/c++/src/objmgr/seq_graph_handle.cpp:40:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/edit_commands_impl.hpp:276:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
276 | auto_ptr<TMemeto> m_Memeto;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/edit_commands_impl.hpp:322:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
322 | auto_ptr<TMemeto> m_Memeto;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/edit_commands_impl.hpp:367:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
367 | auto_ptr<TSeq_descr_Memeto> m_Memeto;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/objmgr/seq_align_handle.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_align_handle.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/objmgr/seq_align_handle.cpp:35:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/scope_impl.hpp:47,
from /<<PKGBUILDDIR>>/c++/src/objmgr/seq_align_handle.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/priority.hpp:153:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
153 | auto_ptr<CPriority_I> m_Sub_I;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /usr/include/c++/12/map:60,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:45,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/usr/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<ncbi::objects::CSeq_id_Handle&&>, std::tuple<>}; _Key = ncbi::objects::CSeq_id_Handle; _Val = std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::objects::CIdRangeMap::SExtremes>; _KeyOfValue = std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::objects::CIdRangeMap::SExtremes> >; _Compare = std::less<ncbi::objects::CSeq_id_Handle>; _Alloc = std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::objects::CIdRangeMap::SExtremes> >]’:
/usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree<ncbi::objects::CSeq_id_Handle, std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::objects::CIdRangeMap::SExtremes>, std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::objects::CIdRangeMap::SExtremes> >, std::less<ncbi::objects::CSeq_id_Handle>, std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::objects::CIdRangeMap::SExtremes> > >::const_iterator’ changed in GCC 7.1
2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/scope_impl.hpp:53:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/seq_annot_edit_commands.hpp:44,
from /<<PKGBUILDDIR>>/c++/src/objmgr/seq_align_handle.cpp:40:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/edit_commands_impl.hpp:276:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
276 | auto_ptr<TMemeto> m_Memeto;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/edit_commands_impl.hpp:322:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
322 | auto_ptr<TMemeto> m_Memeto;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/edit_commands_impl.hpp:367:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
367 | auto_ptr<TSeq_descr_Memeto> m_Memeto;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/objmgr/scope_transaction.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:43:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objmgr/tse_assigner.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info_object.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/seq_entry_info.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/scope_impl.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/scope_transaction_impl.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/objmgr/scope_transaction.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/priority.hpp:153:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
153 | auto_ptr<CPriority_I> m_Sub_I;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objmgr/tse_assigner.cpp:40:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /usr/include/c++/12/map:61:
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = ncbi::objects::CSeq_id_Handle; _Tp = ncbi::objects::CIdRangeMap::SExtremes; _Compare = std::less<ncbi::objects::CSeq_id_Handle>; _Alloc = std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::objects::CIdRangeMap::SExtremes> >]’,
inlined from ‘ncbi::objects::CIdRangeMap::CIdRangeMap(const ncbi::objects::CAnnotObject_Ref&, const ncbi::objects::SAnnotSelector&)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/annot_collector.cpp:448:65:
/usr/include/c++/12/bits/stl_map.h:530:44: note: parameter passing for argument of type ‘std::_Rb_tree<ncbi::objects::CSeq_id_Handle, std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::objects::CIdRangeMap::SExtremes>, std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::objects::CIdRangeMap::SExtremes> >, std::less<ncbi::objects::CSeq_id_Handle>, std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::objects::CIdRangeMap::SExtremes> > >::const_iterator’ changed in GCC 7.1
530 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
531 | std::forward_as_tuple(std::move(__k)),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
532 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = ncbi::objects::CSeq_id_Handle; _Tp = ncbi::objects::CIdRangeMap::SExtremes; _Compare = std::less<ncbi::objects::CSeq_id_Handle>; _Alloc = std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::objects::CIdRangeMap::SExtremes> >]’,
inlined from ‘ncbi::objects::CIdRangeMap::CIdRangeMap(const ncbi::objects::CAnnotObject_Ref&, const ncbi::objects::SAnnotSelector&)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/annot_collector.cpp:455:60:
/usr/include/c++/12/bits/stl_map.h:530:44: note: parameter passing for argument of type ‘std::_Rb_tree<ncbi::objects::CSeq_id_Handle, std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::objects::CIdRangeMap::SExtremes>, std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::objects::CIdRangeMap::SExtremes> >, std::less<ncbi::objects::CSeq_id_Handle>, std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::objects::CIdRangeMap::SExtremes> > >::const_iterator’ changed in GCC 7.1
530 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
531 | std::forward_as_tuple(std::move(__k)),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
532 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/scope_impl.hpp:53:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/scope_impl.hpp:47,
from /<<PKGBUILDDIR>>/c++/src/objmgr/scope_transaction_impl.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/priority.hpp:153:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
153 | auto_ptr<CPriority_I> m_Sub_I;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/scope_impl.hpp:43:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
iztKfv/ncbi-blast+-2.12.0+ds/c++/src/objmgr/mapped_feat.cpp -o mapped_feat.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/seq_feat_handle.cpp -o seq_feat_handle.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/seq_graph_handle.cpp -o seq_graph_handle.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/seq_align_handle.cpp -o seq_align_handle.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/tse_assigner.cpp -o tse_assigner.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/scope_transaction.cpp -o scope_transaction.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/scope_transaction_impl.cpp -o scope_transaction_impl.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -WerIn file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/scope_impl.hpp:53:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objmgr/scope_transaction_impl.cpp: In member function ‘virtual void ncbi::objects::CScopeTransaction_Impl::Commit()’:
/<<PKGBUILDDIR>>/c++/src/objmgr/scope_transaction_impl.cpp:167:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
167 | auto_ptr<CMultEditCommand> cmd(new CMultEditCommand);
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/scope_impl.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/scope_transaction_impl.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/edit_commands_impl.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/objmgr/edit_commands_impl.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/priority.hpp:153:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
153 | auto_ptr<CPriority_I> m_Sub_I;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/edit_commands_impl.hpp:35:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/scope_impl.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/scope_transaction_impl.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/edit_commands_impl.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/bioseq_edit_commands.hpp:40,
from /<<PKGBUILDDIR>>/c++/src/objmgr/bioseq_edit_commands.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/priority.hpp:153:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
153 | auto_ptr<CPriority_I> m_Sub_I;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/bioseq_edit_commands.hpp:35:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/scope_impl.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/scope_transaction_impl.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/edit_commands_impl.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/seq_entry_edit_commands.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/objmgr/seq_entry_edit_commands.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/priority.hpp:153:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
153 | auto_ptr<CPriority_I> m_Sub_I;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbictype.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistre.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_stack.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/src/objmgr/seq_entry_edit_commands.cpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/scope_impl.hpp:53:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/edit_commands_impl.hpp:276:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
276 | auto_ptr<TMemeto> m_Memeto;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/edit_commands_impl.hpp:322:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
322 | auto_ptr<TMemeto> m_Memeto;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/edit_commands_impl.hpp:367:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
367 | auto_ptr<TSeq_descr_Memeto> m_Memeto;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/scope_impl.hpp:53:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/edit_commands_impl.hpp:276:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
276 | auto_ptr<TMemeto> m_Memeto;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/edit_commands_impl.hpp:322:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
322 | auto_ptr<TMemeto> m_Memeto;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/edit_commands_impl.hpp:367:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
367 | auto_ptr<TSeq_descr_Memeto> m_Memeto;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/scope_impl.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/scope_transaction_impl.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/edit_commands_impl.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/bioseq_set_edit_commands.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objmgr/bioseq_set_edit_commands.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/priority.hpp:153:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
153 | auto_ptr<CPriority_I> m_Sub_I;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/bioseq_set_edit_commands.hpp:35:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/scope_impl.hpp:53:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/edit_commands_impl.hpp:276:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
276 | auto_ptr<TMemeto> m_Memeto;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/edit_commands_impl.hpp:322:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
322 | auto_ptr<TMemeto> m_Memeto;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/edit_commands_impl.hpp:367:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
367 | auto_ptr<TSeq_descr_Memeto> m_Memeto;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /usr/include/c++/12/map:60,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:45,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/usr/include/c++/12/bits/stl_tree.h: In member function ‘std::__enable_if_t<std::is_same<_Val, typename std::iterator_traits<_InputIterator>::value_type>::value> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_insert_range_unique(_InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >; _Key = ncbi::objects::CSeq_id_Handle; _Val = ncbi::objects::CSeq_id_Handle; _KeyOfValue = std::_Identity<ncbi::objects::CSeq_id_Handle>; _Compare = std::less<ncbi::objects::CSeq_id_Handle>; _Alloc = std::allocator<ncbi::objects::CSeq_id_Handle>]’:
/usr/include/c++/12/bits/stl_tree.h:1098:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
1098 | _M_insert_range_unique(_InputIterator __first, _InputIterator __last)
| ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_tree.h:1098:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
In file included from /usr/include/c++/12/set:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:46:
In member function ‘void std::set<_Key, _Compare, _Alloc>::insert(_InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >; _Key = ncbi::objects::CSeq_id_Handle; _Compare = std::less<ncbi::objects::CSeq_id_Handle>; _Alloc = std::allocator<ncbi::objects::CSeq_id_Handle>]’,
inlined from ‘virtual void ncbi::objects::CResetIds_EditCommand::Do(ncbi::objects::IScopeTransaction_Impl&)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/bioseq_edit_commands.cpp:56:21:
/usr/include/c++/12/bits/stl_set.h:567:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
567 | { _M_t._M_insert_range_unique(__first, __last); }
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/scope_impl.hpp:53:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
ror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/edit_commands_impl.cpp -o edit_commands_impl.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/bioseq_edit_commands.cpp -o bioseq_edit_commands.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/seq_entry_edit_commands.cpp -o seq_entry_edit_commands.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/bioseq_set_edit_commands.cpp -o bioseq_set_edit_commands.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/edit_saver.cpp -o edit_saver.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/unsupp_editsaver.cpp -o unsupp_editsaver.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<BUILDDIR>>/ncbi-blast+-2.12.0+In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/edit_commands_impl.hpp:276:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
276 | auto_ptr<TMemeto> m_Memeto;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/edit_commands_impl.hpp:322:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
322 | auto_ptr<TMemeto> m_Memeto;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/edit_commands_impl.hpp:367:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
367 | auto_ptr<TSeq_descr_Memeto> m_Memeto;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objmgr/annot_finder.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_finder.hpp:35,
from /<<PKGBUILDDIR>>/c++/src/objmgr/annot_finder.cpp:35:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/objmgr/edits_db_saver.cpp:41:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbictype.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistre.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objmgr/edits_db_saver.cpp:32:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objmgr/split_parser.cpp:33:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/split_parser.hpp:33,
from /<<PKGBUILDDIR>>/c++/src/objmgr/split_parser.cpp:32:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> >}; _Tp = std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> >; _Alloc = std::allocator<std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> > >]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> > >::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> >}; _Tp = std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> >; _Alloc = std::allocator<std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> > >]’:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> >*, std::vector<std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> > > >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/seqloc/Seq_id_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/seqloc/Seq_id.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objects/seq/seq_id_handle.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/seq_id_sort.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objmgr/seq_id_sort.cpp:35:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {ncbi::objects::CSortableSeq_id::SIdPart}; _Tp = ncbi::objects::CSortableSeq_id::SIdPart; _Alloc = std::allocator<ncbi::objects::CSortableSeq_id::SIdPart>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<ncbi::objects::CSortableSeq_id::SIdPart>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ncbi::objects::CSortableSeq_id::SIdPart}; _Tp = ncbi::objects::CSortableSeq_id::SIdPart; _Alloc = std::allocator<ncbi::objects::CSortableSeq_id::SIdPart>]’:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSortableSeq_id::SIdPart*, std::vector<ncbi::objects::CSortableSeq_id::SIdPart> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ds/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/edits_db_engine.cpp -o edits_db_engine.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/edits_db_saver.cpp -o edits_db_saver.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/annot_finder.cpp -o annot_finder.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/gc_assembly_parser.cpp -o gc_assembly_parser.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/split_parser.cpp -o split_parser.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/seq_id_sort.cpp -o seq_id_sort.o
/bin/rm -f libxobjmgr.so .libxobjmgr.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libxobjmgr.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC seq_table_setters.o seq_table_info.o seq_annot_info.o table_field.o seq_map_switch.o snp_annot_info.o annot_types_ci.o seq_loc_cvt.o annot_selector.o seq_descr_ci.o feat_ci.o graph_ci.o annot_object.o annot_object_index.o annot_ci.o tse_info.o tse_info_object.o seq_entry_info.o bioseq_base_info.o bioseq_set_info.o bioseq_info.o data_source.o priority.o prefetch_impl.o prefetch_manager.o prefetch_manager_impl.o prefetch_actions.o scope.o heap_scope.o scope_impl.o scope_info.o tse_handle.o seq_map.o seq_map_ci.o seq_entry_ci.o seq_annot_ci.o seq_table_ci.o seq_entry_handle.o bioseq_set_handle.o bioseq_handle.o seq_annot_handle.o align_ci.o data_loader.o handle_range.o objmgr_exception.o handle_range_map.o object_manager.o seq_vector.o seq_vector_ci.o seqdesc_ci.o tse_split_info.o tse_chunk_info.o bioseq_ci.o annot_type_index.o seq_loc_mapper.o seq_align_mapper.o annot_collector.o data_loader_factory.o mapped_feat.o seq_feat_handle.o seq_graph_handle.o seq_align_handle.o tse_assigner.o scope_transaction.o scope_transaction_impl.o edit_commands_impl.o bioseq_edit_commands.o seq_entry_edit_commands.o bioseq_set_edit_commands.o edit_saver.o unsupp_editsaver.o edits_db_engine.o edits_db_saver.o annot_finder.o gc_assembly_parser.o split_parser.o seq_id_sort.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjmgr.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libxobjmgr.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libxobjmgr.so
/bin/ln -f .xobjmgr.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.xobjmgr.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objmgr'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objmgr'
cd objtools/blast/seqdb_reader/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=seqdb UNIX_PROJ="" sources= configurables=configurables.null
cd objmgr/util/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=util UNIX_PROJ="" sources= configurables=configurables.null
cd algo/dustmask/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xalgodustmask UNIX_PROJ="" sources= configurables=configurables.null
cd objtools/data_loaders/genbank/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=ncbi_xreader UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/dustmask'
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_reader'
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objmgr/util'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objmgr/util'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/dustmask'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_reader'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/dustmask'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objmgr/util'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_reader'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objmgr/util'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/dustmask'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_reader'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objmgr/util'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/dustmask'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_reader'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objmgr/util TMPL=util -w -j4 --jobserver-auth=7,8 all
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/dustmask TMPL=xalgodustmask -w -j4 --jobserver-auth=7,8 all
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader TMPL=seqdb -w -j4 --jobserver-auth=7,8 all
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xreader -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/src/objmgr/util/weight.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objmgr/util/weight.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp: In static member function ‘static char* ncbi::CSeqDBAtlas::Alloc(size_t, bool)’:
/<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp:269:16: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=]
269 | catch(std::bad_alloc) {
| ^~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objmgr/util/feature.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objmgr/util/sequence.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/objistr.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/objmgr/util/feature.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/iterator.hpp:35,
from /<<PKGBUILDDIR>>/c++/src/objmgr/util/sequence.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_loadlock.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/reader.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/reader.cpp:31:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/reader.hpp:32:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_loadlock.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/writer.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/writer.cpp:31:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/writer.hpp:34:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_types_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/feat_ci.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objmgr/util/weight.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_loadlock.hpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_loadlock.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/reader.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/dispatcher.cpp:31:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_loadlock.hpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:34:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/dustmask/symdust.hpp:42,
from /<<PKGBUILDDIR>>/c++/src/algo/dustmask/symdust.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/dustmask/symdust.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_loadlock.hpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/dustmask/symdust.hpp:159:14: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
159 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq );
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/dustmask/symdust.hpp:168:14: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
168 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/dustmask/symdust.cpp:214:6: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
214 | std::auto_ptr< CSymDustMasker::TMaskList >
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/dustmask/symdust.cpp: In member function ‘std::auto_ptr<std::vector<std::pair<unsigned int, unsigned int> > > ncbi::CSymDustMasker::operator()(const sequence_type&, size_type, size_type)’:
/<<PKGBUILDDIR>>/c++/src/algo/dustmask/symdust.cpp:218:10: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
218 | std::auto_ptr< TMaskList > res( new TMaskList );
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/dustmask/symdust.cpp: At global scope:
/<<PKGBUILDDIR>>/c++/src/algo/dustmask/symdust.cpp:288:6: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
288 | std::auto_ptr< CSymDustMasker::TMaskList >
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/dustmask/symdust.cpp: In member function ‘void ncbi::CSymDustMasker::GetMaskedLocs(ncbi::objects::CSeq_id&, const sequence_type&, std::vector<ncbi::CConstRef<ncbi::objects::CSeq_loc> >&)’:
/<<PKGBUILDDIR>>/c++/src/algo/dustmask/symdust.cpp:299:10: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
299 | std::auto_ptr< TMaskList > res = (*this)( seq );
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/dustmask/symdust.cpp: In member function ‘ncbi::CRef<ncbi::objects::CPacked_seqint> ncbi::CSymDustMasker::GetMaskedInts(ncbi::objects::CSeq_id&, const sequence_type&)’:
/<<PKGBUILDDIR>>/c++/src/algo/dustmask/symdust.cpp:313:10: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
313 | std::auto_ptr< TMaskList > res = (*this)( seq );
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/reader.cpp:33:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
103 | auto_ptr<TIndices> m_Indices;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
154 | auto_ptr<TIndices> m_Indices;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/objmgr/util/sequence.cpp:37:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/objmgr/util/feature.cpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/writer.cpp:32:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
103 | auto_ptr<TIndices> m_Indices;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
154 | auto_ptr<TIndices> m_Indices;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp: At global scope:
/<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp:88:13: warning: ‘void ncbi::s_SeqDB_FileNotFound(const std::string&)’ defined but not used [-Wunused-function]
88 | static void s_SeqDB_FileNotFound(const string & fname)
| ^~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
103 | auto_ptr<TIndices> m_Indices;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
154 | auto_ptr<TIndices> m_Indices;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_loadlock.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/writer.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/processors.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbictype.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistre.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_stack.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/rwstream.hpp:40,
from /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/processors.cpp:32:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_loadlock.hpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/processors.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
103 | auto_ptr<TIndices> m_Indices;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
154 | auto_ptr<TIndices> m_Indices;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_reader'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdb.cpp -o seqdb.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp -o seqdbbitset.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp -o seqdbfilter.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp -o seqdbatlas.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp -o seqdbalias.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp -o seqdbcomm/<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp: In function ‘void ncbi::SeqDB_ReadBinaryGiList(const std::string&, std::vector<long long int>&)’:
/<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:830:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
830 | if (((endp - beginp) < 2U)
| ~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp: In function ‘void ncbi::SeqDB_ReadMemoryPigList(const char*, const char*, std::vector<CSeqDBGiList::SPigOid>&, bool*)’:
/<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:1021:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
1021 | if (((bendp - bbeginp) < 2U)
| ~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp: In function ‘void ncbi::SeqDB_ReadMemoryTaxIdList(const char*, const char*, CSeqDBGiList::STaxIdsOids&)’:
/<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:1094:52: warning: comparison of integer expressions of different signedness: ‘Int4’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare]
1094 | if (((bendp - bbeginp) < 2) || (bbeginp[0] != 0xFFFFFFFF)
| ~~~~~~~~~~~^~~~~~~~~~~~~
In file included from /usr/include/c++/12/bits/stl_algo.h:60,
from /usr/include/c++/12/algorithm:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:180,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbithr_conf.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimtx.hpp:62,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbireg.hpp:49,
from /<<PKGBUILDDIR>>/c++/include/corelib/metareg.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:33:
/usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::CSeqDBGiList::STiOid*, vector<ncbi::CSeqDBGiList::STiOid> >; _Distance = int; _Tp = ncbi::CSeqDBGiList::STiOid; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<ncbi::CSeqDB_SortTiLessThan>]’:
/usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::CSeqDBGiList::STiOid*, std::vector<ncbi::CSeqDBGiList::STiOid> >’ changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::CSeqDBGiList::SGiOid*, vector<ncbi::CSeqDBGiList::SGiOid> >; _Distance = int; _Tp = ncbi::CSeqDBGiList::SGiOid; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<ncbi::CSeqDB_SortGiLessThan>]’:
/usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::CSeqDBGiList::SGiOid*, std::vector<ncbi::CSeqDBGiList::SGiOid> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Distance = int; _Tp = long long int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::CSeqDBGiList::STiOid*, vector<ncbi::CSeqDBGiList::STiOid> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<ncbi::CSeqDB_SortTiLessThan>]’:
/usr/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::CSeqDBGiList::STiOid*, std::vector<ncbi::CSeqDBGiList::STiOid> >’ changed in GCC 7.1
1782 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::CSeqDBGiList::SGiOid*, vector<ncbi::CSeqDBGiList::SGiOid> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<ncbi::CSeqDB_SortGiLessThan>]’:
/usr/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::CSeqDBGiList::SGiOid*, std::vector<ncbi::CSeqDBGiList::SGiOid> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::CSeqDBGiList::STiOid*, vector<ncbi::CSeqDBGiList::STiOid> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<ncbi::CSeqDB_SortTiLessThan>]’:
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::CSeqDBGiList::STiOid*, std::vector<ncbi::CSeqDBGiList::STiOid> >’ changed in GCC 7.1
1802 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::CSeqDBGiList::STiOid*, std::vector<ncbi::CSeqDBGiList::STiOid> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::CSeqDBGiList::SGiOid*, vector<ncbi::CSeqDBGiList::SGiOid> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<ncbi::CSeqDB_SortGiLessThan>]’:
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::CSeqDBGiList::SGiOid*, std::vector<ncbi::CSeqDBGiList::SGiOid> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::CSeqDBGiList::SGiOid*, std::vector<ncbi::CSeqDBGiList::SGiOid> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
1908 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1908 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:1844:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1844 | __final_insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1844:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from ‘static void ncbi::CSeqDBIdSet::x_SortAndUnique(std::vector<long long int>&)’ at /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:1920:9:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1940:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1940 | std::__final_insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator<long long int>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<long long int>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘void ncbi::CSeqDBGiList::GetGiList(std::vector<long long int>&) const’ at /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:777:22:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘void ncbi::CSeqDBIdSet::x_BooleanSetOperation(EOperation, const std::vector<long long int>&, bool, const std::vector<long long int>&, bool, std::vector<long long int>&, bool&)’ at /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:2070:29:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘void ncbi::CSeqDBIdSet::x_BooleanSetOperation(EOperation, const std::vector<long long int>&, bool, const std::vector<long long int>&, bool, std::vector<long long int>&, bool&)’ at /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:2076:29:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘void ncbi::CSeqDBIdSet::x_BooleanSetOperation(EOperation, const std::vector<long long int>&, bool, const std::vector<long long int>&, bool, std::vector<long long int>&, bool&)’ at /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:2082:29:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<long long unsigned int>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
inlined from ‘void ncbi::CSeqDBGiList::GetTiList(std::vector<long long unsigned int>&) const’ at /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:799:22:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
inlined from ‘void ncbi::CSeqDBNegativeList::AddTi(ncbi::TTi)’ at /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:831:24,
inlined from ‘ncbi::CRef<ncbi::CSeqDBNegativeList> ncbi::CSeqDBIdSet::GetNegativeList()’ at /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:2222:23:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘void ncbi::CSeqDBNegativeList::AddGi(ncbi::TGi)’ at /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:825:24,
inlined from ‘ncbi::CRef<ncbi::CSeqDBNegativeList> ncbi::CSeqDBIdSet::GetNegativeList()’ at /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:2229:23:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const ncbi::CSeqDBGiList::SGiOid&}; _Tp = ncbi::CSeqDBGiList::SGiOid; _Alloc = std::allocator<ncbi::CSeqDBGiList::SGiOid>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<ncbi::CSeqDBGiList::SGiOid>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {ncbi::CSeqDBGiList::SGiOid}; _Tp = ncbi::CSeqDBGiList::SGiOid; _Alloc = std::allocator<ncbi::CSeqDBGiList::SGiOid>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<ncbi::CSeqDBGiList::SGiOid>::iterator’ changed in GCC 7.1
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ncbi::CSeqDBGiList::SGiOid}; _Tp = ncbi::CSeqDBGiList::SGiOid; _Alloc = std::allocator<ncbi::CSeqDBGiList::SGiOid>]’:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::CSeqDBGiList::SGiOid*, std::vector<ncbi::CSeqDBGiList::SGiOid> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘void ncbi::SeqDB_ReadGiList(const std::string&, std::vector<long long int>&, bool*)’ at /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:1472:22:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {ncbi::CSeqDBGiList::STiOid}; _Tp = ncbi::CSeqDBGiList::STiOid; _Alloc = std::allocator<ncbi::CSeqDBGiList::STiOid>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<ncbi::CSeqDBGiList::STiOid>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ncbi::CSeqDBGiList::STiOid}; _Tp = ncbi::CSeqDBGiList::STiOid; _Alloc = std::allocator<ncbi::CSeqDBGiList::STiOid>]’:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::CSeqDBGiList::STiOid*, std::vector<ncbi::CSeqDBGiList::STiOid> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<long long int>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void ncbi::SeqDB_ReadBinaryGiList(const std::string&, std::vector<long long int>&)’ at /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:841:22:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘ncbi::CSeqDBIdSet_Vector::CSeqDBIdSet_Vector(const std::vector<int>&)’ at /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:1456:28,
inlined from ‘void ncbi::CSeqDBIdSet::Compute(EOperation, const std::vector<int>&, bool)’ at /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:2093:58:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘ncbi::CSeqDBIdSet_Vector::CSeqDBIdSet_Vector(const std::vector<long long unsigned int>&)’ at /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:1470:28,
inlined from ‘void ncbi::CSeqDBIdSet::Compute(EOperation, const std::vector<long long unsigned int>&, bool)’ at /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:2140:58:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘ncbi::CSeqDBIdSet_Vector::CSeqDBIdSet_Vector(const std::vector<int>&)’ at /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:1456:28,
inlined from ‘ncbi::CSeqDBIdSet::CSeqDBIdSet(const std::vector<int>&, EIdType, bool)’ at /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:1887:74:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘ncbi::CSeqDBIdSet_Vector::CSeqDBIdSet_Vector(const std::vector<long long unsigned int>&)’ at /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:1470:28,
inlined from ‘ncbi::CSeqDBIdSet::CSeqDBIdSet(const std::vector<long long unsigned int>&, EIdType, bool)’ at /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:1899:74:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::CSeqDBGiList::SGiOid*, vector<ncbi::CSeqDBGiList::SGiOid> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<ncbi::CSeqDB_SortGiLessThan>]’:
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::CSeqDBGiList::SGiOid*, std::vector<ncbi::CSeqDBGiList::SGiOid> >’ changed in GCC 7.1
1908 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::CSeqDBGiList::SGiOid*, std::vector<ncbi::CSeqDBGiList::SGiOid> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::CSeqDBGiList::SGiOid*, std::vector<ncbi::CSeqDBGiList::SGiOid> >’ changed in GCC 7.1
1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::CSeqDBGiList::STiOid*, vector<ncbi::CSeqDBGiList::STiOid> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<ncbi::CSeqDB_SortTiLessThan>]’:
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::CSeqDBGiList::STiOid*, std::vector<ncbi::CSeqDBGiList::STiOid> >’ changed in GCC 7.1
1908 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::CSeqDBGiList::STiOid*, std::vector<ncbi::CSeqDBGiList::STiOid> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::CSeqDBGiList::STiOid*, std::vector<ncbi::CSeqDBGiList::STiOid> >’ changed in GCC 7.1
1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from ‘void ncbi::CSeqDBNegativeList::InsureOrder()’ at /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:1625:18:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1940:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1940 | std::__final_insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from ‘void ncbi::CSeqDBNegativeList::InsureOrder()’ at /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:1626:18:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31,
inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from ‘void ncbi::CSeqDBNegativeList::InsureOrder()’ at /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:1626:18:
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from ‘ncbi::CIntersectionGiList::CIntersectionGiList(ncbi::CSeqDBNegativeList&, std::vector<long long int>&)’ at /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:1849:9:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1940:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1940 | std::__final_insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::CSeqDBGiList::SGiOid*, vector<ncbi::CSeqDBGiList::SGiOid> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<ncbi::CSeqDB_SortGiLessThan>]’,
inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ncbi::CSeqDBGiList::SGiOid*, vector<ncbi::CSeqDBGiList::SGiOid> >; _Compare = ncbi::CSeqDB_SortGiLessThan]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18,
inlined from ‘void ncbi::s_InsureOrder(TVector&) [with TCompare = CSeqDB_SortGiLessThan; TVector = std::vector<CSeqDBGiList::SGiOid>]’ at /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:604:13,
inlined from ‘void ncbi::CSeqDBGiList::InsureOrder(ESortOrder)’ at /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:637:49:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::CSeqDBGiList::SGiOid*, std::vector<ncbi::CSeqDBGiList::SGiOid> >’ changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::CSeqDBGiList::SGiOid*, vector<ncbi::CSeqDBGiList::SGiOid> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<ncbi::CSeqDB_SortGiLessThan>]’,
inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::CSeqDBGiList::SGiOid*, vector<ncbi::CSeqDBGiList::SGiOid> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<ncbi::CSeqDB_SortGiLessThan>]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31,
inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ncbi::CSeqDBGiList::SGiOid*, vector<ncbi::CSeqDBGiList::SGiOid> >; _Compare = ncbi::CSeqDB_SortGiLessThan]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18,
inlined from ‘void ncbi::s_InsureOrder(TVector&) [with TCompare = CSeqDB_SortGiLessThan; TVector = std::vector<CSeqDBGiList::SGiOid>]’ at /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:604:13,
inlined from ‘void ncbi::CSeqDBGiList::InsureOrder(ESortOrder)’ at /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:637:49:
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::CSeqDBGiList::SGiOid*, std::vector<ncbi::CSeqDBGiList::SGiOid> >’ changed in GCC 7.1
1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::CSeqDBGiList::SGiOid*, std::vector<ncbi::CSeqDBGiList::SGiOid> >’ changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::CSeqDBGiList::STiOid*, vector<ncbi::CSeqDBGiList::STiOid> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<ncbi::CSeqDB_SortTiLessThan>]’,
inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ncbi::CSeqDBGiList::STiOid*, vector<ncbi::CSeqDBGiList::STiOid> >; _Compare = ncbi::CSeqDB_SortTiLessThan]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18,
inlined from ‘void ncbi::s_InsureOrder(TVector&) [with TCompare = CSeqDB_SortTiLessThan; TVector = std::vector<CSeqDBGiList::STiOid>]’ at /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:604:13,
inlined from ‘void ncbi::CSeqDBGiList::InsureOrder(ESortOrder)’ at /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:638:49:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::CSeqDBGiList::STiOid*, std::vector<ncbi::CSeqDBGiList::STiOid> >’ changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::CSeqDBGiList::STiOid*, vector<ncbi::CSeqDBGiList::STiOid> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<ncbi::CSeqDB_SortTiLessThan>]’,
inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::CSeqDBGiList::STiOid*, vector<ncbi::CSeqDBGiList::STiOid> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<ncbi::CSeqDB_SortTiLessThan>]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31,
inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ncbi::CSeqDBGiList::STiOid*, vector<ncbi::CSeqDBGiList::STiOid> >; _Compare = ncbi::CSeqDB_SortTiLessThan]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18,
inlined from ‘void ncbi::s_InsureOrder(TVector&) [with TCompare = CSeqDB_SortTiLessThan; TVector = std::vector<CSeqDBGiList::STiOid>]’ at /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:604:13,
inlined from ‘void ncbi::CSeqDBGiList::InsureOrder(ESortOrder)’ at /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:638:49:
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::CSeqDBGiList::STiOid*, std::vector<ncbi::CSeqDBGiList::STiOid> >’ changed in GCC 7.1
1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::CSeqDBGiList::STiOid*, std::vector<ncbi::CSeqDBGiList::STiOid> >’ changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from ‘ncbi::CIntersectionGiList::CIntersectionGiList(ncbi::CSeqDBGiList&, std::vector<long long int>&)’ at /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:1815:9:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1940:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1940 | std::__final_insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ncbi::CSeqDBGiList::SGiOid; _Alloc = std::allocator<ncbi::CSeqDBGiList::SGiOid>]’,
inlined from ‘ncbi::CIntersectionGiList::CIntersectionGiList(ncbi::CSeqDBGiList&, std::vector<long long int>&)’ at /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:1836:28:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::CSeqDBGiList::SGiOid*, std::vector<ncbi::CSeqDBGiList::SGiOid> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp: In member function ‘int ncbi::CSeqDBVol::GetAmbigPartialSeq(int, char**, int, ncbi::ESeqDBAllocType, ncbi::CSeqDB::TSequenceRanges*, ncbi::CSeqDB::TSequenceRanges*) const’:
/<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:1540:50: warning: comparison of integer expressions of different signedness: ‘ncbi::TSeqPos’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
1540 | if ((*partial_ranges)[num_ranges - 1].second > base_length) {
/<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp: In member function ‘int ncbi::CSeqDBVol::x_GetSequence(int, const char**) const’:
/<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:1778:24: warning: comparing the result of pointer addition ‘((* buffer) + -1)’ and NULL [-Waddress]
1778 | if (! (*buffer - 1)) return -1;
| ~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp: In member function ‘void ncbi::CSeqDBVol::GetRawSeqAndAmbig(int, const char**, int*, int*) const’:
/<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:2969:11: warning: variable ‘map_end’ set but not used [-Wunused-but-set-variable]
2969 | TIndx map_end = 0;
| ^~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp: In member function ‘ncbi::CSeqDBIsam::EErrorCode ncbi::CSeqDBIsam::x_StringSearch(const std::string&, std::vector<std::__cxx11::basic_string<char> >&, std::vector<std::__cxx11::basic_string<char> >&, std::vector<long long int>&)’:
/<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:972:9: warning: variable ‘found_short’ set but not used [-Wunused-but-set-variable]
972 | int found_short(-1);
| ^~~~~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_reader/impl/seqdbfile.hpp:45,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_reader/impl/seqdbisam.hpp:42,
from /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:34:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<long long int>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void ncbi::CSeqDBIsam::x_ExtractPageData(const std::string&, TIndx, const char*, const char*, std::vector<long long int>&, std::vector<std::__cxx11::basic_string<char> >&, std::vector<std::__cxx11::basic_string<char> >&)’ at /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:665:34:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void ncbi::CSeqDBIsam::x_LoadIndex(ncbi::CSeqDBFileMemMap&, std::vector<T>&, std::vector<long long int>&) [with T = std::__cxx11::basic_string<char>]’ at /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_reader/impl/seqdbisam.hpp:1383:23:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void ncbi::CSeqDBIsam::x_LoadIndex(ncbi::CSeqDBFileMemMap&, std::vector<T>&, std::vector<long long int>&) [with T = long long int]’ at /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_reader/impl/seqdbisam.hpp:1343:23,
inlined from ‘void ncbi::CSeqDBIsam::x_TranslateGiList(int, ncbi::CSeqDBGiList&) [with T = long long int]’ at /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_reader/impl/seqdbisam.hpp:574:20:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void ncbi::CSeqDBIsam::x_LoadIndex(ncbi::CSeqDBFileMemMap&, std::vector<T>&, std::vector<long long int>&) [with T = long long int]’ at /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_reader/impl/seqdbisam.hpp:1344:23,
inlined from ‘void ncbi::CSeqDBIsam::x_TranslateGiList(int, ncbi::CSeqDBGiList&) [with T = long long int]’ at /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_reader/impl/seqdbisam.hpp:574:20:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void ncbi::CSeqDBIsam::x_LoadIndex(ncbi::CSeqDBFileMemMap&, std::vector<T>&, std::vector<long long int>&) [with T = long long int]’ at /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_reader/impl/seqdbisam.hpp:1348:19,
inlined from ‘void ncbi::CSeqDBIsam::x_TranslateGiList(int, ncbi::CSeqDBGiList&) [with T = long long int]’ at /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_reader/impl/seqdbisam.hpp:574:20:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void ncbi::CSeqDBIsam::x_LoadData(ncbi::CSeqDBFileMemMap&, std::vector<T>&, std::vector<int>&, int, TIndx) [with T = long long int]’ at /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_reader/impl/seqdbisam.hpp:1365:23,
inlined from ‘void ncbi::CSeqDBIsam::x_TranslateGiList(int, ncbi::CSeqDBGiList&) [with T = long long int]’ at /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_reader/impl/seqdbisam.hpp:597:23:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void ncbi::CSeqDBIsam::x_LoadIndex(ncbi::CSeqDBFileMemMap&, std::vector<T>&, std::vector<long long int>&) [with T = unsigned int]’ at /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_reader/impl/seqdbisam.hpp:510:27,
inlined from ‘void ncbi::CSeqDBIsam::x_TranslateGiList(int, ncbi::CSeqDBGiList&) [with T = unsigned int]’ at /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_reader/impl/seqdbisam.hpp:574:20:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void ncbi::CSeqDBIsam::x_LoadIndex(ncbi::CSeqDBFileMemMap&, std::vector<T>&, std::vector<long long int>&) [with T = unsigned int]’ at /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_reader/impl/seqdbisam.hpp:514:23,
inlined from ‘void ncbi::CSeqDBIsam::x_TranslateGiList(int, ncbi::CSeqDBGiList&) [with T = unsigned int]’ at /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_reader/impl/seqdbisam.hpp:574:20:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
on.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp -o seqdbfile.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp -o seqdbimpl.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp -o seqdbvol.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp -o seqdbvolset.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp -o seqdboidlist.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp -o seqdbisam.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp -o seqdbtax.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp -o seqdbgilistset.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp -o seqdbexpert.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp -o seqdbblob.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp -o seqdbcol.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp -o seqdbgimask.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -WforIn file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42,
from /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /usr/include/c++/12/bits/stl_algo.h:60,
from /usr/include/c++/12/algorithm:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:180,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_reader/impl/seqdb_lmdb.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp:34:
/usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
1802 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
1908 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<long long unsigned int>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from ‘void ncbi::blastdb::SortAndUnique(std::vector<V>&) [with V = long long unsigned int]’ at /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_reader/impl/seqdb_lmdb.hpp:190:11:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31,
inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from ‘void ncbi::blastdb::SortAndUnique(std::vector<V>&) [with V = long long unsigned int]’ at /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_reader/impl/seqdb_lmdb.hpp:190:11:
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void ncbi::CSeqDBLMDB::GetOidsForTaxIds(const std::set<int>&, std::vector<int>&, std::vector<int>&) const’ at /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp:593:30:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void ncbi::CSeqDBLMDB::GetOidsForTaxIds(const std::set<int>&, std::vector<int>&, std::vector<int>&) const’ at /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp:599:31:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/dustmask'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/dustmask/symdust.cpp -o symdust.o
/bin/rm -f libxalgodustmask.so .libxalgodustmask.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libxalgodustmask.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC symdust.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lxobjmgr -lseq -lxncbi -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgodustmask.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libxalgodustmask.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libxalgodustmask.so
/bin/ln -f .xalgodustmask.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.xalgodustmask.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/dustmask'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/dustmask'
cd algo/segmask/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xalgosegmask UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/segmask'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/segmask'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/segmask'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/segmask'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/segmask'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/segmask TMPL=xalgosegmask -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/segmask/segmask.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/algo/segmask/segmask.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/bioseq_handle.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/segmask'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/segmask/segmask.cpp -o segmask.o
/bin/rm -f libxalgosegmask.so .libxalgosegmask.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libxalgosegmask.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC segmask.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lblast -lxobjmgr -lxncbi -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgosegmask.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libxalgosegmask.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libxalgosegmask.so
/bin/ln -f .xalgosegmask.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.xalgosegmask.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/segmask'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/segmask'
cd objmgr/split/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=id2_split UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objmgr/split'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objmgr/split'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objmgr/split'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objmgr/split'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objmgr/split'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objmgr/split TMPL=id2_split -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objmgr/split'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/split/blob_splitter.cpp -o blob_splitter.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/split/blob_splitter_params.cpp -o blob_splitter_params.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/split/split_blob.cpp -o split_blob.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/split/blob_splitter_impl.cpp -o blob_splitter_impl.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/split/blob_splitter_parser.cpp -o blob_splitter_parser.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/split/blob_splitter_maker.cpp -o blob_splitter_maker.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/ncbi-blast+-2.12.0+In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/objmgr/split/blob_splitter_impl.cpp:47:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/split/blob_splitter_impl.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objmgr/split/blob_splitter_impl.cpp:35:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objmgr/split/blob_splitter_impl.cpp:48:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const ncbi::objects::SAnnotPiece&}; _Tp = ncbi::objects::SAnnotPiece; _Alloc = std::allocator<ncbi::objects::SAnnotPiece>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<ncbi::objects::SAnnotPiece>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ncbi::objects::SAnnotPiece; _Alloc = std::allocator<ncbi::objects::SAnnotPiece>]’,
inlined from ‘void ncbi::objects::CBlobSplitterImpl::SplitPieces(ncbi::objects::CAnnotPieces&)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/split/blob_splitter_impl.cpp:508:34:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::SAnnotPiece*, std::vector<ncbi::objects::SAnnotPiece> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ncbi::objects::SAnnotPiece; _Alloc = std::allocator<ncbi::objects::SAnnotPiece>]’,
inlined from ‘void ncbi::objects::CBlobSplitterImpl::SplitPieces(ncbi::objects::CAnnotPieces&)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/split/blob_splitter_impl.cpp:536:26:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::SAnnotPiece*, std::vector<ncbi::objects::SAnnotPiece> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/objmgr/split/blob_splitter_parser.cpp:69:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/split/blob_splitter_impl.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objmgr/split/blob_splitter_parser.cpp:35:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /usr/include/c++/12/map:60,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:45,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/usr/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const ncbi::objects::CPlaceId&>, std::tuple<>}; _Key = ncbi::objects::CPlaceId; _Val = std::pair<const ncbi::objects::CPlaceId, ncbi::objects::CPlace_SplitInfo>; _KeyOfValue = std::_Select1st<std::pair<const ncbi::objects::CPlaceId, ncbi::objects::CPlace_SplitInfo> >; _Compare = std::less<ncbi::objects::CPlaceId>; _Alloc = std::allocator<std::pair<const ncbi::objects::CPlaceId, ncbi::objects::CPlace_SplitInfo> >]’:
/usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree<ncbi::objects::CPlaceId, std::pair<const ncbi::objects::CPlaceId, ncbi::objects::CPlace_SplitInfo>, std::_Select1st<std::pair<const ncbi::objects::CPlaceId, ncbi::objects::CPlace_SplitInfo> >, std::less<ncbi::objects::CPlaceId>, std::allocator<std::pair<const ncbi::objects::CPlaceId, ncbi::objects::CPlace_SplitInfo> > >::const_iterator’ changed in GCC 7.1
2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/map:61:
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = ncbi::objects::CPlaceId; _Tp = ncbi::objects::CPlace_SplitInfo; _Compare = std::less<ncbi::objects::CPlaceId>; _Alloc = std::allocator<std::pair<const ncbi::objects::CPlaceId, ncbi::objects::CPlace_SplitInfo> >]’,
inlined from ‘void ncbi::objects::CBlobSplitterImpl::CopySkeleton(ncbi::objects::CBioseq&, const ncbi::objects::CBioseq&)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/split/blob_splitter_parser.cpp:276:39:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<ncbi::objects::CPlaceId, std::pair<const ncbi::objects::CPlaceId, ncbi::objects::CPlace_SplitInfo>, std::_Select1st<std::pair<const ncbi::objects::CPlaceId, ncbi::objects::CPlace_SplitInfo> >, std::less<ncbi::objects::CPlaceId>, std::allocator<std::pair<const ncbi::objects::CPlaceId, ncbi::objects::CPlace_SplitInfo> > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = ncbi::objects::CPlaceId; _Tp = ncbi::objects::CPlace_SplitInfo; _Compare = std::less<ncbi::objects::CPlaceId>; _Alloc = std::allocator<std::pair<const ncbi::objects::CPlaceId, ncbi::objects::CPlace_SplitInfo> >]’,
inlined from ‘void ncbi::objects::CBlobSplitterImpl::CopySkeleton(ncbi::objects::CBioseq_set&, const ncbi::objects::CBioseq_set&)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/split/blob_splitter_parser.cpp:393:39:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<ncbi::objects::CPlaceId, std::pair<const ncbi::objects::CPlaceId, ncbi::objects::CPlace_SplitInfo>, std::_Select1st<std::pair<const ncbi::objects::CPlaceId, ncbi::objects::CPlace_SplitInfo> >, std::less<ncbi::objects::CPlaceId>, std::allocator<std::pair<const ncbi::objects::CPlaceId, ncbi::objects::CPlace_SplitInfo> > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/objmgr/split/blob_splitter_maker.cpp:59:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/split/blob_splitter_impl.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objmgr/split/blob_splitter_maker.cpp:35:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objmgr/split/annot_piece.cpp: In member function ‘std::multiset<ncbi::objects::SAnnotPiece>::iterator ncbi::objects::SIdAnnotPieces::Erase(std::multiset<ncbi::objects::SAnnotPiece>::iterator)’:
/<<PKGBUILDDIR>>/c++/src/objmgr/split/annot_piece.cpp:221:35: note: parameter passing for argument of type ‘std::multiset<ncbi::objects::SAnnotPiece>::iterator’ {aka ‘std::_Rb_tree<ncbi::objects::SAnnotPiece, ncbi::objects::SAnnotPiece, std::_Identity<ncbi::objects::SAnnotPiece>, std::less<ncbi::objects::SAnnotPiece>, std::allocator<ncbi::objects::SAnnotPiece> >::const_iterator’} changed in GCC 7.1
221 | SIdAnnotPieces::TPieces::iterator SIdAnnotPieces::Erase(TPieces::iterator it)
| ^~~~~~~~~~~~~~
ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/split/id_range.cpp -o id_range.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/split/object_splitinfo.cpp -o object_splitinfo.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/split/asn_sizer.cpp -o asn_sizer.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/split/annot_piece.cpp -o annot_piece.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/split/chunk_info.cpp -o chunk_info.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/split/size.cpp -o size.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/split/split_exceptions.cpp -o split_exceptions.o
/bin/rm -f libid2_split.so .libid2_split.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libid2_split.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC blob_splitter.o blob_splitter_params.o split_blob.o blob_splitter_impl.o blob_splitter_parser.o blob_splitter_maker.o id_range.o object_splitinfo.o asn_sizer.o annot_piece.o chunk_info.o size.o split_exceptions.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lxobjmgr -lseqsplit -lseqset -lseq -lgeneral -lxser -lxcompress -lxncbi -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2_split.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libid2_split.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libid2_split.so
/bin/ln -f .id2_split.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.id2_split.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objmgr/split'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objmgr/split'
In file included from /<<PKGBUILDDIR>>/c++/src/objmgr/util/weight.cpp:55:
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_types_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/feat_ci.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objmgr/util/indexer.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/util/unicode.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/objmgr/util/indexer.cpp:32:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objmgr/util/weight.cpp: In function ‘void ncbi::objects::GetProteinWeights(const CBioseq_Handle&, TWeights&)’:
/<<PKGBUILDDIR>>/c++/src/objmgr/util/weight.cpp:363:18: warning: catching polymorphic type ‘class ncbi::objects::CObjmgrUtilException’ by value [-Wcatch-value=]
363 | } catch (CObjmgrUtilException) {
| ^~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objmgr/util/feature.cpp:86:
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/processors.cpp: In static member function ‘static ncbi::CObjectIStream* ncbi::objects::CProcessor_ID2::x_OpenDataStream(const ncbi::objects::CID2_Reply_Data&)’:
/<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/processors.cpp:1791:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1791 | auto_ptr<IReader> reader(new COSSReader(data.GetData()));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/processors.cpp:1792:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1792 | auto_ptr<CNcbiIstream> stream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/processors.cpp:1815:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1815 | auto_ptr<CObjectIStream> in;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/processors.cpp: In static member function ‘static void ncbi::objects::CProcessor_ID2::x_ReadData(const ncbi::objects::CID2_Reply_Data&, const ncbi::CObjectInfo&, size_t&)’:
/<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/processors.cpp:1825:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1825 | auto_ptr<CObjectIStream> in(x_OpenDataStream(data));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/processors.cpp: In static member function ‘static void ncbi::objects::CProcessor_ID2::DumpDataAsText(const ncbi::objects::CID2_Reply_Data&, ncbi::CNcbiOstream&)’:
/<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/processors.cpp:1860:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1860 | auto_ptr<CObjectIStream> in(x_OpenDataStream(data));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/processors.cpp:1861:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1861 | auto_ptr<CObjectOStream> out(CObjectOStream::Open(eSerial_AsnText,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/objmgr/util/indexer.cpp:43:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objmgr/util/sequence.cpp:89:
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objmgr/util/sequence.cpp: In function ‘ncbi::CRef<ncbi::objects::CSeq_loc> ncbi::objects::sequence::SourceToProduct(const ncbi::objects::CSeq_feat&, const ncbi::objects::CSeq_loc&, TS2PFlags, ncbi::objects::CScope*, int*)’:
/<<PKGBUILDDIR>>/c++/src/objmgr/util/sequence.cpp:703:18: warning: catching polymorphic type ‘class ncbi::objects::CObjmgrUtilException’ by value [-Wcatch-value=]
703 | } catch (CObjmgrUtilException) {
| ^~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objmgr/util/sequence.cpp: In function ‘ncbi::CRef<ncbi::objects::CSeq_loc> ncbi::objects::sequence::ProductToSource(const ncbi::objects::CSeq_feat&, const ncbi::objects::CSeq_loc&, TP2SFlags, ncbi::objects::CScope*)’:
/<<PKGBUILDDIR>>/c++/src/objmgr/util/sequence.cpp:746:18: warning: catching polymorphic type ‘class ncbi::objects::CObjmgrUtilException’ by value [-Wcatch-value=]
746 | } catch (CObjmgrUtilException) {
| ^~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objmgr/util/sequence.cpp:751:18: warning: catching polymorphic type ‘class ncbi::objects::CObjmgrUtilException’ by value [-Wcatch-value=]
751 | } catch (CObjmgrUtilException) {
| ^~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objmgr/util/sequence.cpp: In function ‘void ncbi::objects::sequence::GetOverlappingFeatures(const ncbi::objects::CSeq_loc&, ncbi::objects::CSeqFeatData_Base::E_Choice, ncbi::objects::CSeqFeatData::ESubtype, EOverlapType, TFeatScores&, ncbi::objects::CScope&, TBestFeatOpts, CGetOverlappingFeaturesPlugin*)’:
/<<PKGBUILDDIR>>/c++/src/objmgr/util/sequence.cpp:969:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
969 | auto_ptr<CFeat_CI> feat_it_ptr;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objmgr/util/sequence.cpp: At global scope:
/<<PKGBUILDDIR>>/c++/src/objmgr/util/sequence.cpp:1682:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1682 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objmgr/util/sequence.cpp: In function ‘ncbi::CConstRef<ncbi::objects::CSeq_feat> ncbi::objects::sequence::GetBestCdsForMrna(const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, TBestFeatOpts, CGetOverlappingFeaturesPlugin*)’:
/<<PKGBUILDDIR>>/c++/src/objmgr/util/sequence.cpp:1771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1771 | auto_ptr<CGetOverlappingFeaturesPlugin> cds_plugin(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objmgr/util/indexer.cpp:44:
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objmgr/util/sequence.cpp: In member function ‘ncbi::CRef<ncbi::objects::CSeq_loc> ncbi::objects::SRelLoc::Resolve(const ncbi::objects::CSeq_loc&, ncbi::objects::CScope*, TFlags) const’:
/<<PKGBUILDDIR>>/c++/src/objmgr/util/sequence.cpp:4617:22: warning: catching polymorphic type ‘class ncbi::objects::CObjmgrUtilException’ by value [-Wcatch-value=]
4617 | } catch (CObjmgrUtilException) {
| ^~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objmgr/util/indexer.cpp: In function ‘int ncbi::objects::SkipMixedContent(const char*)’:
/<<PKGBUILDDIR>>/c++/src/objmgr/util/indexer.cpp:3599:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
3599 | for (int i = 0; i < sizeof (mixedTags); i++) {
| ~~^~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objmgr/util/indexer.cpp: In member function ‘void ncbi::objects::CWordPairIndexer::PopulateWordPairIndex(std::string)’:
/<<PKGBUILDDIR>>/c++/src/objmgr/util/indexer.cpp:3676:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
3676 | for (int i = 0; i < str.length(); i++) {
| ~~^~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objmgr/util/sequence.cpp: In instantiation of ‘void ncbi::objects::x_Translate(const Container&, std::string&, int, const CGenetic_code*, bool, bool, bool, bool, bool*) [with Container = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
/<<PKGBUILDDIR>>/c++/src/objmgr/util/sequence.cpp:3957:16: required from here
/<<PKGBUILDDIR>>/c++/src/objmgr/util/sequence.cpp:3501:43: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
3501 | const size_t usable_size = seq.size() > frame ? seq.size() - frame : 0;
| ~~~~~~~~~~~^~~~~~~
/<<PKGBUILDDIR>>/c++/src/objmgr/util/sequence.cpp: In instantiation of ‘void ncbi::objects::x_Translate(const Container&, std::string&, int, const CGenetic_code*, bool, bool, bool, bool, bool*) [with Container = CSeqVector; std::string = std::__cxx11::basic_string<char>]’:
/<<PKGBUILDDIR>>/c++/src/objmgr/util/sequence.cpp:3985:16: required from here
/<<PKGBUILDDIR>>/c++/src/objmgr/util/sequence.cpp:3501:43: warning: comparison of integer expressions of different signedness: ‘ncbi::TSeqPos’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/wgsmaster.hpp:33,
from /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/wgsmaster.cpp:32:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info_object.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/seq_entry_info.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/wgsmaster.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/reader_snp.cpp:33:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
103 | auto_ptr<TIndices> m_Indices;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiargs.hpp:84,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp_api.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_param.hpp:41,
from /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/reader_snp.cpp:32:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
154 | auto_ptr<TIndices> m_Indices;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/reader_snp.cpp:55:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/dispatcher.cpp -o dispatcher.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/reader.cpp -o reader.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/writer.cpp -o writer.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/processors.cpp -o processors.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/wgsmaster.cpp -o wgsmaster.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/reader_snp.cpp -o reader_snp.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/ncbi-blast+-2.12/<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/blob_id.cpp: In constructor ‘ncbi::objects::CBlob_id::CBlob_id(ncbi::CTempString)’:
/<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/blob_id.cpp:51:12: warning: catching polymorphic type ‘class ncbi::CStringException’ by value [-Wcatch-value=]
51 | catch (CStringException) {
| ^~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_loadlock.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/request_result.cpp:33:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_loadlock.hpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/processors.hpp:32,
from /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/request_result.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
103 | auto_ptr<TIndices> m_Indices;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
154 | auto_ptr<TIndices> m_Indices;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /usr/include/c++/12/memory:66,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_stack.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/usr/include/c++/12/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _ForwardIterator = ncbi::objects::CSeq_id_Handle*]’:
/usr/include/c++/12/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
113 | __do_uninit_copy(_InputIterator __first, _InputIterator __last,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >; _ForwardIterator = ncbi::objects::CSeq_id_Handle*; bool _TrivialValueTypes = false]’,
inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _ForwardIterator = ncbi::objects::CSeq_id_Handle*]’ at /usr/include/c++/12/bits/stl_uninitialized.h:185:15,
inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _ForwardIterator = ncbi::objects::CSeq_id_Handle*; _Tp = ncbi::objects::CSeq_id_Handle]’ at /usr/include/c++/12/bits/stl_uninitialized.h:372:37,
inlined from ‘std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >; _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator<ncbi::objects::CSeq_id_Handle>]’ at /usr/include/c++/12/bits/stl_vector.h:1617:35,
inlined from ‘std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator<ncbi::objects::CSeq_id_Handle>]’ at /usr/include/c++/12/bits/vector.tcc:232:44,
inlined from ‘ncbi::objects::CFixedSeq_ids::CFixedSeq_ids(ENcbiOwnership, TList&, TState)’ at /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/request_result.cpp:107:26:
/usr/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
137 | { return std::__do_uninit_copy(__first, __last, __result); }
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >; _ForwardIterator = ncbi::objects::CSeq_id_Handle*; bool _TrivialValueTypes = false]’,
inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _ForwardIterator = ncbi::objects::CSeq_id_Handle*]’ at /usr/include/c++/12/bits/stl_uninitialized.h:185:15,
inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _ForwardIterator = ncbi::objects::CSeq_id_Handle*; _Tp = ncbi::objects::CSeq_id_Handle]’ at /usr/include/c++/12/bits/stl_uninitialized.h:372:37,
inlined from ‘std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator<ncbi::objects::CSeq_id_Handle>]’ at /usr/include/c++/12/bits/stl_vector.h:601:31,
inlined from ‘ncbi::CObjectFor<T>::CObjectFor(Args&& ...) [with Args = {const std::vector<ncbi::objects::CSeq_id_Handle, std::allocator<ncbi::objects::CSeq_id_Handle> >&}; T = std::vector<ncbi::objects::CSeq_id_Handle>]’ at /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:2341:11,
inlined from ‘ncbi::objects::CFixedSeq_ids::CFixedSeq_ids(const TList&, TState)’ at /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/request_result.cpp:90:29:
/usr/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
137 | { return std::__do_uninit_copy(__first, __last, __result); }
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/map:60,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:45:
/usr/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const ncbi::objects::CSeq_id_Handle&>, std::tuple<>}; _Key = ncbi::objects::CSeq_id_Handle; _Val = std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CFixedSeq_ids>::CInfo, ncbi::CObjectCounterLocker> >; _KeyOfValue = std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CFixedSeq_ids>::CInfo, ncbi::CObjectCounterLocker> > >; _Compare = std::less<ncbi::objects::CSeq_id_Handle>; _Alloc = std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CFixedSeq_ids>::CInfo, ncbi::CObjectCounterLocker> > >]’:
/usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree<ncbi::objects::CSeq_id_Handle, std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CFixedSeq_ids>::CInfo, ncbi::CObjectCounterLocker> >, std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CFixedSeq_ids>::CInfo, ncbi::CObjectCounterLocker> > >, std::less<ncbi::objects::CSeq_id_Handle>, std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CFixedSeq_ids>::CInfo, ncbi::CObjectCounterLocker> > > >::const_iterator’ changed in GCC 7.1
2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/map:61:
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = ncbi::objects::CSeq_id_Handle; _Tp = ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CFixedSeq_ids>::CInfo, ncbi::CObjectCounterLocker>; _Compare = std::less<ncbi::objects::CSeq_id_Handle>; _Alloc = std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CFixedSeq_ids>::CInfo, ncbi::CObjectCounterLocker> > >]’,
inlined from ‘bool ncbi::objects::GBL::CInfoCache<KeyType, DataType>::SetLoaded(ncbi::objects::GBL::CInfoRequestor&, const key_type&, const data_type&, ncbi::objects::GBL::EExpirationType) [with KeyType = ncbi::objects::CSeq_id_Handle; DataType = ncbi::objects::CFixedSeq_ids]’ at /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/info_cache.hpp:650:40:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<ncbi::objects::CSeq_id_Handle, std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CFixedSeq_ids>::CInfo, ncbi::CObjectCounterLocker> >, std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CFixedSeq_ids>::CInfo, ncbi::CObjectCounterLocker> > >, std::less<ncbi::objects::CSeq_id_Handle>, std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CFixedSeq_ids>::CInfo, ncbi::CObjectCounterLocker> > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = ncbi::objects::CSeq_id_Handle; _Tp = ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CFixedSeq_ids>::CInfo, ncbi::CObjectCounterLocker>; _Compare = std::less<ncbi::objects::CSeq_id_Handle>; _Alloc = std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CFixedSeq_ids>::CInfo, ncbi::CObjectCounterLocker> > >]’,
inlined from ‘ncbi::objects::GBL::CInfoCache<KeyType, DataType>::TInfoLock ncbi::objects::GBL::CInfoCache<KeyType, DataType>::GetLoadLock(ncbi::objects::GBL::CInfoRequestor&, const key_type&, ncbi::objects::GBL::EDoNotWait) [with KeyType = ncbi::objects::CSeq_id_Handle; DataType = ncbi::objects::CFixedSeq_ids]’ at /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/info_cache.hpp:633:40:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<ncbi::objects::CSeq_id_Handle, std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CFixedSeq_ids>::CInfo, ncbi::CObjectCounterLocker> >, std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CFixedSeq_ids>::CInfo, ncbi::CObjectCounterLocker> > >, std::less<ncbi::objects::CSeq_id_Handle>, std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CFixedSeq_ids>::CInfo, ncbi::CObjectCounterLocker> > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const ncbi::objects::CSeq_id_Handle&>, std::tuple<>}; _Key = ncbi::objects::CSeq_id_Handle; _Val = std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::SAccVerFound>::CInfo, ncbi::CObjectCounterLocker> >; _KeyOfValue = std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::SAccVerFound>::CInfo, ncbi::CObjectCounterLocker> > >; _Compare = std::less<ncbi::objects::CSeq_id_Handle>; _Alloc = std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::SAccVerFound>::CInfo, ncbi::CObjectCounterLocker> > >]’:
/usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree<ncbi::objects::CSeq_id_Handle, std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::SAccVerFound>::CInfo, ncbi::CObjectCounterLocker> >, std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::SAccVerFound>::CInfo, ncbi::CObjectCounterLocker> > >, std::less<ncbi::objects::CSeq_id_Handle>, std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::SAccVerFound>::CInfo, ncbi::CObjectCounterLocker> > > >::const_iterator’ changed in GCC 7.1
2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = ncbi::objects::CSeq_id_Handle; _Tp = ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::SAccVerFound>::CInfo, ncbi::CObjectCounterLocker>; _Compare = std::less<ncbi::objects::CSeq_id_Handle>; _Alloc = std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::SAccVerFound>::CInfo, ncbi::CObjectCounterLocker> > >]’,
inlined from ‘bool ncbi::objects::GBL::CInfoCache<KeyType, DataType>::SetLoadedFor(ncbi::objects::GBL::CInfoRequestor&, const key_type&, const data_type&, TExpirationTime) [with KeyType = ncbi::objects::CSeq_id_Handle; DataType = ncbi::objects::CDataLoader::SAccVerFound]’ at /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/info_cache.hpp:667:40,
inlined from ‘bool ncbi::objects::CReaderRequestResult::SetLoadedAccFromSeqIds(const ncbi::objects::CSeq_id_Handle&, const ncbi::objects::CLoadLockSeqIds&)’ at /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/request_result.cpp:1229:21:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<ncbi::objects::CSeq_id_Handle, std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::SAccVerFound>::CInfo, ncbi::CObjectCounterLocker> >, std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::SAccVerFound>::CInfo, ncbi::CObjectCounterLocker> > >, std::less<ncbi::objects::CSeq_id_Handle>, std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::SAccVerFound>::CInfo, ncbi::CObjectCounterLocker> > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = ncbi::objects::CSeq_id_Handle; _Tp = ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::SAccVerFound>::CInfo, ncbi::CObjectCounterLocker>; _Compare = std::less<ncbi::objects::CSeq_id_Handle>; _Alloc = std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::SAccVerFound>::CInfo, ncbi::CObjectCounterLocker> > >]’,
inlined from ‘ncbi::objects::GBL::CInfoCache<KeyType, DataType>::TInfoLock ncbi::objects::GBL::CInfoCache<KeyType, DataType>::GetLoadLock(ncbi::objects::GBL::CInfoRequestor&, const key_type&, ncbi::objects::GBL::EDoNotWait) [with KeyType = ncbi::objects::CSeq_id_Handle; DataType = ncbi::objects::CDataLoader::SAccVerFound]’ at /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/info_cache.hpp:633:40:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<ncbi::objects::CSeq_id_Handle, std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::SAccVerFound>::CInfo, ncbi::CObjectCounterLocker> >, std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::SAccVerFound>::CInfo, ncbi::CObjectCounterLocker> > >, std::less<ncbi::objects::CSeq_id_Handle>, std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::SAccVerFound>::CInfo, ncbi::CObjectCounterLocker> > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = ncbi::objects::CSeq_id_Handle; _Tp = ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::SAccVerFound>::CInfo, ncbi::CObjectCounterLocker>; _Compare = std::less<ncbi::objects::CSeq_id_Handle>; _Alloc = std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::SAccVerFound>::CInfo, ncbi::CObjectCounterLocker> > >]’,
inlined from ‘bool ncbi::objects::GBL::CInfoCache<KeyType, DataType>::SetLoaded(ncbi::objects::GBL::CInfoRequestor&, const key_type&, const data_type&, ncbi::objects::GBL::EExpirationType) [with KeyType = ncbi::objects::CSeq_id_Handle; DataType = ncbi::objects::CDataLoader::SAccVerFound]’ at /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/info_cache.hpp:650:40:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<ncbi::objects::CSeq_id_Handle, std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::SAccVerFound>::CInfo, ncbi::CObjectCounterLocker> >, std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::SAccVerFound>::CInfo, ncbi::CObjectCounterLocker> > >, std::less<ncbi::objects::CSeq_id_Handle>, std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::SAccVerFound>::CInfo, ncbi::CObjectCounterLocker> > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const ncbi::objects::CSeq_id_Handle&>, std::tuple<>}; _Key = ncbi::objects::CSeq_id_Handle; _Val = std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::SGiFound>::CInfo, ncbi::CObjectCounterLocker> >; _KeyOfValue = std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::SGiFound>::CInfo, ncbi::CObjectCounterLocker> > >; _Compare = std::less<ncbi::objects::CSeq_id_Handle>; _Alloc = std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::SGiFound>::CInfo, ncbi::CObjectCounterLocker> > >]’:
/usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree<ncbi::objects::CSeq_id_Handle, std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::SGiFound>::CInfo, ncbi::CObjectCounterLocker> >, std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::SGiFound>::CInfo, ncbi::CObjectCounterLocker> > >, std::less<ncbi::objects::CSeq_id_Handle>, std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::SGiFound>::CInfo, ncbi::CObjectCounterLocker> > > >::const_iterator’ changed in GCC 7.1
2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = ncbi::objects::CSeq_id_Handle; _Tp = ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::SGiFound>::CInfo, ncbi::CObjectCounterLocker>; _Compare = std::less<ncbi::objects::CSeq_id_Handle>; _Alloc = std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::SGiFound>::CInfo, ncbi::CObjectCounterLocker> > >]’,
inlined from ‘bool ncbi::objects::GBL::CInfoCache<KeyType, DataType>::SetLoadedFor(ncbi::objects::GBL::CInfoRequestor&, const key_type&, const data_type&, TExpirationTime) [with KeyType = ncbi::objects::CSeq_id_Handle; DataType = ncbi::objects::CDataLoader::SGiFound]’ at /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/info_cache.hpp:667:40,
inlined from ‘bool ncbi::objects::CReaderRequestResult::SetLoadedGiFromSeqIds(const ncbi::objects::CSeq_id_Handle&, const ncbi::objects::CLoadLockSeqIds&)’ at /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/request_result.cpp:1284:21:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<ncbi::objects::CSeq_id_Handle, std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::SGiFound>::CInfo, ncbi::CObjectCounterLocker> >, std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::SGiFound>::CInfo, ncbi::CObjectCounterLocker> > >, std::less<ncbi::objects::CSeq_id_Handle>, std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::SGiFound>::CInfo, ncbi::CObjectCounterLocker> > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = ncbi::objects::CSeq_id_Handle; _Tp = ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::SGiFound>::CInfo, ncbi::CObjectCounterLocker>; _Compare = std::less<ncbi::objects::CSeq_id_Handle>; _Alloc = std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::SGiFound>::CInfo, ncbi::CObjectCounterLocker> > >]’,
inlined from ‘ncbi::objects::GBL::CInfoCache<KeyType, DataType>::TInfoLock ncbi::objects::GBL::CInfoCache<KeyType, DataType>::GetLoadLock(ncbi::objects::GBL::CInfoRequestor&, const key_type&, ncbi::objects::GBL::EDoNotWait) [with KeyType = ncbi::objects::CSeq_id_Handle; DataType = ncbi::objects::CDataLoader::SGiFound]’ at /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/info_cache.hpp:633:40:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<ncbi::objects::CSeq_id_Handle, std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::SGiFound>::CInfo, ncbi::CObjectCounterLocker> >, std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::SGiFound>::CInfo, ncbi::CObjectCounterLocker> > >, std::less<ncbi::objects::CSeq_id_Handle>, std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::SGiFound>::CInfo, ncbi::CObjectCounterLocker> > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = ncbi::objects::CSeq_id_Handle; _Tp = ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::SGiFound>::CInfo, ncbi::CObjectCounterLocker>; _Compare = std::less<ncbi::objects::CSeq_id_Handle>; _Alloc = std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::SGiFound>::CInfo, ncbi::CObjectCounterLocker> > >]’,
inlined from ‘bool ncbi::objects::GBL::CInfoCache<KeyType, DataType>::SetLoaded(ncbi::objects::GBL::CInfoRequestor&, const key_type&, const data_type&, ncbi::objects::GBL::EExpirationType) [with KeyType = ncbi::objects::CSeq_id_Handle; DataType = ncbi::objects::CDataLoader::SGiFound]’ at /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/info_cache.hpp:650:40:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<ncbi::objects::CSeq_id_Handle, std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::SGiFound>::CInfo, ncbi::CObjectCounterLocker> >, std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::SGiFound>::CInfo, ncbi::CObjectCounterLocker> > >, std::less<ncbi::objects::CSeq_id_Handle>, std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::SGiFound>::CInfo, ncbi::CObjectCounterLocker> > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const ncbi::objects::CSeq_id_Handle&>, std::tuple<>}; _Key = ncbi::objects::CSeq_id_Handle; _Val = std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, std::__cxx11::basic_string<char> >::CInfo, ncbi::CObjectCounterLocker> >; _KeyOfValue = std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, std::__cxx11::basic_string<char> >::CInfo, ncbi::CObjectCounterLocker> > >; _Compare = std::less<ncbi::objects::CSeq_id_Handle>; _Alloc = std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, std::__cxx11::basic_string<char> >::CInfo, ncbi::CObjectCounterLocker> > >]’:
/usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree<ncbi::objects::CSeq_id_Handle, std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, std::__cxx11::basic_string<char> >::CInfo, ncbi::CObjectCounterLocker> >, std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, std::__cxx11::basic_string<char> >::CInfo, ncbi::CObjectCounterLocker> > >, std::less<ncbi::objects::CSeq_id_Handle>, std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, std::__cxx11::basic_string<char> >::CInfo, ncbi::CObjectCounterLocker> > > >::const_iterator’ changed in GCC 7.1
2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = ncbi::objects::CSeq_id_Handle; _Tp = ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, std::__cxx11::basic_string<char> >::CInfo, ncbi::CObjectCounterLocker>; _Compare = std::less<ncbi::objects::CSeq_id_Handle>; _Alloc = std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, std::__cxx11::basic_string<char> >::CInfo, ncbi::CObjectCounterLocker> > >]’,
inlined from ‘bool ncbi::objects::GBL::CInfoCache<KeyType, DataType>::SetLoadedFor(ncbi::objects::GBL::CInfoRequestor&, const key_type&, const data_type&, TExpirationTime) [with KeyType = ncbi::objects::CSeq_id_Handle; DataType = std::__cxx11::basic_string<char>]’ at /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/info_cache.hpp:667:40,
inlined from ‘bool ncbi::objects::CReaderRequestResult::SetLoadedLabelFromSeqIds(const ncbi::objects::CSeq_id_Handle&, const ncbi::objects::CLoadLockSeqIds&)’ at /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/request_result.cpp:1367:21:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<ncbi::objects::CSeq_id_Handle, std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, std::__cxx11::basic_string<char> >::CInfo, ncbi::CObjectCounterLocker> >, std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, std::__cxx11::basic_string<char> >::CInfo, ncbi::CObjectCounterLocker> > >, std::less<ncbi::objects::CSeq_id_Handle>, std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, std::__cxx11::basic_string<char> >::CInfo, ncbi::CObjectCounterLocker> > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = ncbi::objects::CSeq_id_Handle; _Tp = ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, std::__cxx11::basic_string<char> >::CInfo, ncbi::CObjectCounterLocker>; _Compare = std::less<ncbi::objects::CSeq_id_Handle>; _Alloc = std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, std::__cxx11::basic_string<char> >::CInfo, ncbi::CObjectCounterLocker> > >]’,
inlined from ‘ncbi::objects::GBL::CInfoCache<KeyType, DataType>::TInfoLock ncbi::objects::GBL::CInfoCache<KeyType, DataType>::GetLoadLock(ncbi::objects::GBL::CInfoRequestor&, const key_type&, ncbi::objects::GBL::EDoNotWait) [with KeyType = ncbi::objects::CSeq_id_Handle; DataType = std::__cxx11::basic_string<char>]’ at /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/info_cache.hpp:633:40:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<ncbi::objects::CSeq_id_Handle, std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, std::__cxx11::basic_string<char> >::CInfo, ncbi::CObjectCounterLocker> >, std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, std::__cxx11::basic_string<char> >::CInfo, ncbi::CObjectCounterLocker> > >, std::less<ncbi::objects::CSeq_id_Handle>, std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, std::__cxx11::basic_string<char> >::CInfo, ncbi::CObjectCounterLocker> > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = ncbi::objects::CSeq_id_Handle; _Tp = ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, std::__cxx11::basic_string<char> >::CInfo, ncbi::CObjectCounterLocker>; _Compare = std::less<ncbi::objects::CSeq_id_Handle>; _Alloc = std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, std::__cxx11::basic_string<char> >::CInfo, ncbi::CObjectCounterLocker> > >]’,
inlined from ‘bool ncbi::objects::GBL::CInfoCache<KeyType, DataType>::SetLoaded(ncbi::objects::GBL::CInfoRequestor&, const key_type&, const data_type&, ncbi::objects::GBL::EExpirationType) [with KeyType = ncbi::objects::CSeq_id_Handle; DataType = std::__cxx11::basic_string<char>]’ at /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/info_cache.hpp:650:40:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<ncbi::objects::CSeq_id_Handle, std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, std::__cxx11::basic_string<char> >::CInfo, ncbi::CObjectCounterLocker> >, std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, std::__cxx11::basic_string<char> >::CInfo, ncbi::CObjectCounterLocker> > >, std::less<ncbi::objects::CSeq_id_Handle>, std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, std::__cxx11::basic_string<char> >::CInfo, ncbi::CObjectCounterLocker> > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const ncbi::objects::CSeq_id_Handle&>, std::tuple<>}; _Key = ncbi::objects::CSeq_id_Handle; _Val = std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, int>::CInfo, ncbi::CObjectCounterLocker> >; _KeyOfValue = std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, int>::CInfo, ncbi::CObjectCounterLocker> > >; _Compare = std::less<ncbi::objects::CSeq_id_Handle>; _Alloc = std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, int>::CInfo, ncbi::CObjectCounterLocker> > >]’:
/usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree<ncbi::objects::CSeq_id_Handle, std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, int>::CInfo, ncbi::CObjectCounterLocker> >, std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, int>::CInfo, ncbi::CObjectCounterLocker> > >, std::less<ncbi::objects::CSeq_id_Handle>, std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, int>::CInfo, ncbi::CObjectCounterLocker> > > >::const_iterator’ changed in GCC 7.1
2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = ncbi::objects::CSeq_id_Handle; _Tp = ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, int>::CInfo, ncbi::CObjectCounterLocker>; _Compare = std::less<ncbi::objects::CSeq_id_Handle>; _Alloc = std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, int>::CInfo, ncbi::CObjectCounterLocker> > >]’,
inlined from ‘bool ncbi::objects::GBL::CInfoCache<KeyType, DataType>::SetLoaded(ncbi::objects::GBL::CInfoRequestor&, const key_type&, const data_type&, ncbi::objects::GBL::EExpirationType) [with KeyType = ncbi::objects::CSeq_id_Handle; DataType = int]’ at /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/info_cache.hpp:650:40,
inlined from ‘bool ncbi::objects::CReaderRequestResult::SetLoadedTaxId(const ncbi::objects::CSeq_id_Handle&, const TTaxId&)’ at /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/request_result.cpp:1462:18:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<ncbi::objects::CSeq_id_Handle, std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, int>::CInfo, ncbi::CObjectCounterLocker> >, std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, int>::CInfo, ncbi::CObjectCounterLocker> > >, std::less<ncbi::objects::CSeq_id_Handle>, std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, int>::CInfo, ncbi::CObjectCounterLocker> > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = ncbi::objects::CSeq_id_Handle; _Tp = ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, int>::CInfo, ncbi::CObjectCounterLocker>; _Compare = std::less<ncbi::objects::CSeq_id_Handle>; _Alloc = std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, int>::CInfo, ncbi::CObjectCounterLocker> > >]’,
inlined from ‘ncbi::objects::GBL::CInfoCache<KeyType, DataType>::TInfoLock ncbi::objects::GBL::CInfoCache<KeyType, DataType>::GetLoadLock(ncbi::objects::GBL::CInfoRequestor&, const key_type&, ncbi::objects::GBL::EDoNotWait) [with KeyType = ncbi::objects::CSeq_id_Handle; DataType = int]’ at /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/info_cache.hpp:633:40:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<ncbi::objects::CSeq_id_Handle, std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, int>::CInfo, ncbi::CObjectCounterLocker> >, std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, int>::CInfo, ncbi::CObjectCounterLocker> > >, std::less<ncbi::objects::CSeq_id_Handle>, std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, int>::CInfo, ncbi::CObjectCounterLocker> > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const ncbi::objects::CSeq_id_Handle&>, std::tuple<>}; _Key = ncbi::objects::CSeq_id_Handle; _Val = std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::SHashFound>::CInfo, ncbi::CObjectCounterLocker> >; _KeyOfValue = std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::SHashFound>::CInfo, ncbi::CObjectCounterLocker> > >; _Compare = std::less<ncbi::objects::CSeq_id_Handle>; _Alloc = std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::SHashFound>::CInfo, ncbi::CObjectCounterLocker> > >]’:
/usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree<ncbi::objects::CSeq_id_Handle, std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::SHashFound>::CInfo, ncbi::CObjectCounterLocker> >, std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::SHashFound>::CInfo, ncbi::CObjectCounterLocker> > >, std::less<ncbi::objects::CSeq_id_Handle>, std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::SHashFound>::CInfo, ncbi::CObjectCounterLocker> > > >::const_iterator’ changed in GCC 7.1
2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = ncbi::objects::CSeq_id_Handle; _Tp = ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::SHashFound>::CInfo, ncbi::CObjectCounterLocker>; _Compare = std::less<ncbi::objects::CSeq_id_Handle>; _Alloc = std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::SHashFound>::CInfo, ncbi::CObjectCounterLocker> > >]’,
inlined from ‘bool ncbi::objects::GBL::CInfoCache<KeyType, DataType>::SetLoaded(ncbi::objects::GBL::CInfoRequestor&, const key_type&, const data_type&, ncbi::objects::GBL::EExpirationType) [with KeyType = ncbi::objects::CSeq_id_Handle; DataType = ncbi::objects::CDataLoader::SHashFound]’ at /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/info_cache.hpp:650:40:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<ncbi::objects::CSeq_id_Handle, std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::SHashFound>::CInfo, ncbi::CObjectCounterLocker> >, std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::SHashFound>::CInfo, ncbi::CObjectCounterLocker> > >, std::less<ncbi::objects::CSeq_id_Handle>, std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::SHashFound>::CInfo, ncbi::CObjectCounterLocker> > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = ncbi::objects::CSeq_id_Handle; _Tp = ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::SHashFound>::CInfo, ncbi::CObjectCounterLocker>; _Compare = std::less<ncbi::objects::CSeq_id_Handle>; _Alloc = std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::SHashFound>::CInfo, ncbi::CObjectCounterLocker> > >]’,
inlined from ‘ncbi::objects::GBL::CInfoCache<KeyType, DataType>::TInfoLock ncbi::objects::GBL::CInfoCache<KeyType, DataType>::GetLoadLock(ncbi::objects::GBL::CInfoRequestor&, const key_type&, ncbi::objects::GBL::EDoNotWait) [with KeyType = ncbi::objects::CSeq_id_Handle; DataType = ncbi::objects::CDataLoader::SHashFound]’ at /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/info_cache.hpp:633:40:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<ncbi::objects::CSeq_id_Handle, std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::SHashFound>::CInfo, ncbi::CObjectCounterLocker> >, std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::SHashFound>::CInfo, ncbi::CObjectCounterLocker> > >, std::less<ncbi::objects::CSeq_id_Handle>, std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::SHashFound>::CInfo, ncbi::CObjectCounterLocker> > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const ncbi::objects::CSeq_id_Handle&>, std::tuple<>}; _Key = ncbi::objects::CSeq_id_Handle; _Val = std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, unsigned int>::CInfo, ncbi::CObjectCounterLocker> >; _KeyOfValue = std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, unsigned int>::CInfo, ncbi::CObjectCounterLocker> > >; _Compare = std::less<ncbi::objects::CSeq_id_Handle>; _Alloc = std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, unsigned int>::CInfo, ncbi::CObjectCounterLocker> > >]’:
/usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree<ncbi::objects::CSeq_id_Handle, std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, unsigned int>::CInfo, ncbi::CObjectCounterLocker> >, std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, unsigned int>::CInfo, ncbi::CObjectCounterLocker> > >, std::less<ncbi::objects::CSeq_id_Handle>, std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, unsigned int>::CInfo, ncbi::CObjectCounterLocker> > > >::const_iterator’ changed in GCC 7.1
2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = ncbi::objects::CSeq_id_Handle; _Tp = ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, unsigned int>::CInfo, ncbi::CObjectCounterLocker>; _Compare = std::less<ncbi::objects::CSeq_id_Handle>; _Alloc = std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, unsigned int>::CInfo, ncbi::CObjectCounterLocker> > >]’,
inlined from ‘bool ncbi::objects::GBL::CInfoCache<KeyType, DataType>::SetLoaded(ncbi::objects::GBL::CInfoRequestor&, const key_type&, const data_type&, ncbi::objects::GBL::EExpirationType) [with KeyType = ncbi::objects::CSeq_id_Handle; DataType = unsigned int]’ at /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/info_cache.hpp:650:40:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<ncbi::objects::CSeq_id_Handle, std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, unsigned int>::CInfo, ncbi::CObjectCounterLocker> >, std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, unsigned int>::CInfo, ncbi::CObjectCounterLocker> > >, std::less<ncbi::objects::CSeq_id_Handle>, std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, unsigned int>::CInfo, ncbi::CObjectCounterLocker> > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = ncbi::objects::CSeq_id_Handle; _Tp = ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, unsigned int>::CInfo, ncbi::CObjectCounterLocker>; _Compare = std::less<ncbi::objects::CSeq_id_Handle>; _Alloc = std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, unsigned int>::CInfo, ncbi::CObjectCounterLocker> > >]’,
inlined from ‘ncbi::objects::GBL::CInfoCache<KeyType, DataType>::TInfoLock ncbi::objects::GBL::CInfoCache<KeyType, DataType>::GetLoadLock(ncbi::objects::GBL::CInfoRequestor&, const key_type&, ncbi::objects::GBL::EDoNotWait) [with KeyType = ncbi::objects::CSeq_id_Handle; DataType = unsigned int]’ at /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/info_cache.hpp:633:40:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<ncbi::objects::CSeq_id_Handle, std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, unsigned int>::CInfo, ncbi::CObjectCounterLocker> >, std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, unsigned int>::CInfo, ncbi::CObjectCounterLocker> > >, std::less<ncbi::objects::CSeq_id_Handle>, std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, unsigned int>::CInfo, ncbi::CObjectCounterLocker> > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const ncbi::objects::CSeq_id_Handle&>, std::tuple<>}; _Key = ncbi::objects::CSeq_id_Handle; _Val = std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::STypeFound>::CInfo, ncbi::CObjectCounterLocker> >; _KeyOfValue = std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::STypeFound>::CInfo, ncbi::CObjectCounterLocker> > >; _Compare = std::less<ncbi::objects::CSeq_id_Handle>; _Alloc = std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::STypeFound>::CInfo, ncbi::CObjectCounterLocker> > >]’:
/usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree<ncbi::objects::CSeq_id_Handle, std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::STypeFound>::CInfo, ncbi::CObjectCounterLocker> >, std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::STypeFound>::CInfo, ncbi::CObjectCounterLocker> > >, std::less<ncbi::objects::CSeq_id_Handle>, std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::STypeFound>::CInfo, ncbi::CObjectCounterLocker> > > >::const_iterator’ changed in GCC 7.1
2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = ncbi::objects::CSeq_id_Handle; _Tp = ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::STypeFound>::CInfo, ncbi::CObjectCounterLocker>; _Compare = std::less<ncbi::objects::CSeq_id_Handle>; _Alloc = std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::STypeFound>::CInfo, ncbi::CObjectCounterLocker> > >]’,
inlined from ‘bool ncbi::objects::GBL::CInfoCache<KeyType, DataType>::SetLoaded(ncbi::objects::GBL::CInfoRequestor&, const key_type&, const data_type&, ncbi::objects::GBL::EExpirationType) [with KeyType = ncbi::objects::CSeq_id_Handle; DataType = ncbi::objects::CDataLoader::STypeFound]’ at /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/info_cache.hpp:650:40:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<ncbi::objects::CSeq_id_Handle, std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::STypeFound>::CInfo, ncbi::CObjectCounterLocker> >, std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::STypeFound>::CInfo, ncbi::CObjectCounterLocker> > >, std::less<ncbi::objects::CSeq_id_Handle>, std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::STypeFound>::CInfo, ncbi::CObjectCounterLocker> > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = ncbi::objects::CSeq_id_Handle; _Tp = ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::STypeFound>::CInfo, ncbi::CObjectCounterLocker>; _Compare = std::less<ncbi::objects::CSeq_id_Handle>; _Alloc = std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::STypeFound>::CInfo, ncbi::CObjectCounterLocker> > >]’,
inlined from ‘ncbi::objects::GBL::CInfoCache<KeyType, DataType>::TInfoLock ncbi::objects::GBL::CInfoCache<KeyType, DataType>::GetLoadLock(ncbi::objects::GBL::CInfoRequestor&, const key_type&, ncbi::objects::GBL::EDoNotWait) [with KeyType = ncbi::objects::CSeq_id_Handle; DataType = ncbi::objects::CDataLoader::STypeFound]’ at /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/info_cache.hpp:633:40:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<ncbi::objects::CSeq_id_Handle, std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::STypeFound>::CInfo, ncbi::CObjectCounterLocker> >, std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::STypeFound>::CInfo, ncbi::CObjectCounterLocker> > >, std::less<ncbi::objects::CSeq_id_Handle>, std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, ncbi::CRef<ncbi::objects::GBL::CInfoCache<ncbi::objects::CSeq_id_Handle, ncbi::objects::CDataLoader::STypeFound>::CInfo, ncbi::CObjectCounterLocker> > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::pair<ncbi::objects::CSeq_id_Handle, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >&>, std::tuple<>}; _Key = std::pair<ncbi::objects::CSeq_id_Handle, std::__cxx11::basic_string<char> >; _Val = std::pair<const std::pair<ncbi::objects::CSeq_id_Handle, std::__cxx11::basic_string<char> >, ncbi::CRef<ncbi::objects::GBL::CInfoCache<std::pair<ncbi::objects::CSeq_id_Handle, std::__cxx11::basic_string<char> >, ncbi::objects::CFixedBlob_ids>::CInfo, ncbi::CObjectCounterLocker> >; _KeyOfValue = std::_Select1st<std::pair<const std::pair<ncbi::objects::CSeq_id_Handle, std::__cxx11::basic_string<char> >, ncbi::CRef<ncbi::objects::GBL::CInfoCache<std::pair<ncbi::objects::CSeq_id_Handle, std::__cxx11::basic_string<char> >, ncbi::objects::CFixedBlob_ids>::CInfo, ncbi::CObjectCounterLocker> > >; _Compare = std::less<std::pair<ncbi::objects::CSeq_id_Handle, std::__cxx11::basic_string<char> > >; _Alloc = std::allocator<std::pair<const std::pair<ncbi::objects::CSeq_id_Handle, std::__cxx11::basic_string<char> >, ncbi::CRef<ncbi::objects::GBL::CInfoCache<std::pair<ncbi::objects::CSeq_id_Handle, std::__cxx11::basic_string<char> >, ncbi::objects::CFixedBlob_ids>::CInfo, ncbi::CObjectCounterLocker> > >]’:
/usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::pair<ncbi::objects::CSeq_id_Handle, std::__cxx11::basic_string<char> >, std::pair<const std::pair<ncbi::objects::CSeq_id_Handle, std::__cxx11::basic_string<char> >, ncbi::CRef<ncbi::objects::GBL::CInfoCache<std::pair<ncbi::objects::CSeq_id_Handle, std::__cxx11::basic_string<char> >, ncbi::objects::CFixedBlob_ids>::CInfo, ncbi::CObjectCounterLocker> >, std::_Select1st<std::pair<const std::pair<ncbi::objects::CSeq_id_Handle, std::__cxx11::basic_string<char> >, ncbi::CRef<ncbi::objects::GBL::CInfoCache<std::pair<ncbi::objects::CSeq_id_Handle, std::__cxx11::basic_string<char> >, ncbi::objects::CFixedBlob_ids>::CInfo, ncbi::CObjectCounterLocker> > >, std::less<std::pair<ncbi::objects::CSeq_id_Handle, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const std::pair<ncbi::objects::CSeq_id_Handle, std::__cxx11::basic_string<char> >, ncbi::CRef<ncbi::objects::GBL::CInfoCache<std::pair<ncbi::objects::CSeq_id_Handle, std::__cxx11::basic_string<char> >, ncbi::objects::CFixedBlob_ids>::CInfo, ncbi::CObjectCounterLocker> > > >::const_iterator’ changed in GCC 7.1
2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::pair<ncbi::objects::CSeq_id_Handle, std::__cxx11::basic_string<char> >; _Tp = ncbi::CRef<ncbi::objects::GBL::CInfoCache<std::pair<ncbi::objects::CSeq_id_Handle, std::__cxx11::basic_string<char> >, ncbi::objects::CFixedBlob_ids>::CInfo, ncbi::CObjectCounterLocker>; _Compare = std::less<std::pair<ncbi::objects::CSeq_id_Handle, std::__cxx11::basic_string<char> > >; _Alloc = std::allocator<std::pair<const std::pair<ncbi::objects::CSeq_id_Handle, std::__cxx11::basic_string<char> >, ncbi::CRef<ncbi::objects::GBL::CInfoCache<std::pair<ncbi::objects::CSeq_id_Handle, std::__cxx11::basic_string<char> >, ncbi::objects::CFixedBlob_ids>::CInfo, ncbi::CObjectCounterLocker> > >]’,
inlined from ‘bool ncbi::objects::GBL::CInfoCache<KeyType, DataType>::SetLoaded(ncbi::objects::GBL::CInfoRequestor&, const key_type&, const data_type&, ncbi::objects::GBL::EExpirationType) [with KeyType = std::pair<ncbi::objects::CSeq_id_Handle, std::__cxx11::basic_string<char> >; DataType = ncbi::objects::CFixedBlob_ids]’ at /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/info_cache.hpp:650:40:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<std::pair<ncbi::objects::CSeq_id_Handle, std::__cxx11::basic_string<char> >, std::pair<const std::pair<ncbi::objects::CSeq_id_Handle, std::__cxx11::basic_string<char> >, ncbi::CRef<ncbi::objects::GBL::CInfoCache<std::pair<ncbi::objects::CSeq_id_Handle, std::__cxx11::basic_string<char> >, ncbi::objects::CFixedBlob_ids>::CInfo, ncbi::CObjectCounterLocker> >, std::_Select1st<std::pair<const std::pair<ncbi::objects::CSeq_id_Handle, std::__cxx11::basic_string<char> >, ncbi::CRef<ncbi::objects::GBL::CInfoCache<std::pair<ncbi::objects::CSeq_id_Handle, std::__cxx11::basic_string<char> >, ncbi::objects::CFixedBlob_ids>::CInfo, ncbi::CObjectCounterLocker> > >, std::less<std::pair<ncbi::objects::CSeq_id_Handle, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const std::pair<ncbi::objects::CSeq_id_Handle, std::__cxx11::basic_string<char> >, ncbi::CRef<ncbi::objects::GBL::CInfoCache<std::pair<ncbi::objects::CSeq_id_Handle, std::__cxx11::basic_string<char> >, ncbi::objects::CFixedBlob_ids>::CInfo, ncbi::CObjectCounterLocker> > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::pair<ncbi::objects::CSeq_id_Handle, std::__cxx11::basic_string<char> >; _Tp = ncbi::CRef<ncbi::objects::GBL::CInfoCache<std::pair<ncbi::objects::CSeq_id_Handle, std::__cxx11::basic_string<char> >, ncbi::objects::CFixedBlob_ids>::CInfo, ncbi::CObjectCounterLocker>; _Compare = std::less<std::pair<ncbi::objects::CSeq_id_Handle, std::__cxx11::basic_string<char> > >; _Alloc = std::allocator<std::pair<const std::pair<ncbi::objects::CSeq_id_Handle, std::__cxx11::basic_string<char> >, ncbi::CRef<ncbi::objects::GBL::CInfoCache<std::pair<ncbi::objects::CSeq_id_Handle, std::__cxx11::basic_string<char> >, ncbi::objects::CFixedBlob_ids>::CInfo, ncbi::CObjectCounterLocker> > >]’,
inlined from ‘ncbi::objects::GBL::CInfoCache<KeyType, DataType>::TInfoLock ncbi::objects::GBL::CInfoCache<KeyType, DataType>::GetLoadLock(ncbi::objects::GBL::CInfoRequestor&, const key_type&, ncbi::objects::GBL::EDoNotWait) [with KeyType = std::pair<ncbi::objects::CSeq_id_Handle, std::__cxx11::basic_string<char> >; DataType = ncbi::objects::CFixedBlob_ids]’ at /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/info_cache.hpp:633:40:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<std::pair<ncbi::objects::CSeq_id_Handle, std::__cxx11::basic_string<char> >, std::pair<const std::pair<ncbi::objects::CSeq_id_Handle, std::__cxx11::basic_string<char> >, ncbi::CRef<ncbi::objects::GBL::CInfoCache<std::pair<ncbi::objects::CSeq_id_Handle, std::__cxx11::basic_string<char> >, ncbi::objects::CFixedBlob_ids>::CInfo, ncbi::CObjectCounterLocker> >, std::_Select1st<std::pair<const std::pair<ncbi::objects::CSeq_id_Handle, std::__cxx11::basic_string<char> >, ncbi::CRef<ncbi::objects::GBL::CInfoCache<std::pair<ncbi::objects::CSeq_id_Handle, std::__cxx11::basic_string<char> >, ncbi::objects::CFixedBlob_ids>::CInfo, ncbi::CObjectCounterLocker> > >, std::less<std::pair<ncbi::objects::CSeq_id_Handle, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const std::pair<ncbi::objects::CSeq_id_Handle, std::__cxx11::basic_string<char> >, ncbi::CRef<ncbi::objects::GBL::CInfoCache<std::pair<ncbi::objects::CSeq_id_Handle, std::__cxx11::basic_string<char> >, ncbi::objects::CFixedBlob_ids>::CInfo, ncbi::CObjectCounterLocker> > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdb.cpp:33:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<long long int>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void ncbi::CSeqDB::GetGis(int, std::vector<long long int>&, bool) const’ at /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdb.cpp:1081:26:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_loadlock.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/reader.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/reader_id1_base.hpp:33,
from /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp:32:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiargs.hpp:84,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp_api.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_param.hpp:41,
from /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp:31:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_loadlock.hpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp:33:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
103 | auto_ptr<TIndices> m_Indices;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
154 | auto_ptr<TIndices> m_Indices;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_loadlock.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/reader.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33,
from /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/reader_service.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiargs.hpp:84,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp_api.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_param.hpp:41,
from /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/reader_service.cpp:31:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_loadlock.hpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_loadlock.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/reader.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33,
from /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiargs.hpp:84,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp_api.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_param.hpp:41,
from /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:32:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_loadlock.hpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:37:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
103 | auto_ptr<TIndices> m_Indices;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
154 | auto_ptr<TIndices> m_Indices;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/seqref.cpp -o seqref.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/blob_id.cpp -o blob_id.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/request_result.cpp -o request_result.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp -o reader_id1_base.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp -o reader_id2_base.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/reader_service.cpp -o reader_service.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCEIn file included from /usr/include/c++/12/map:60,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:45,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/usr/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const ncbi::objects::CSeq_id_Handle&>, std::tuple<>}; _Key = ncbi::objects::CSeq_id_Handle; _Val = std::pair<const ncbi::objects::CSeq_id_Handle, std::pair<int, std::vector<ncbi::objects::CSeq_id_Handle> > >; _KeyOfValue = std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle, std::pair<int, std::vector<ncbi::objects::CSeq_id_Handle> > > >; _Compare = std::less<ncbi::objects::CSeq_id_Handle>; _Alloc = std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, std::pair<int, std::vector<ncbi::objects::CSeq_id_Handle> > > >]’:
/usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree<ncbi::objects::CSeq_id_Handle, std::pair<const ncbi::objects::CSeq_id_Handle, std::pair<int, std::vector<ncbi::objects::CSeq_id_Handle> > >, std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle, std::pair<int, std::vector<ncbi::objects::CSeq_id_Handle> > > >, std::less<ncbi::objects::CSeq_id_Handle>, std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, std::pair<int, std::vector<ncbi::objects::CSeq_id_Handle> > > > >::const_iterator’ changed in GCC 7.1
2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_loadlock.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/info_cache.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/info_cache.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/info_cache.cpp:34:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_loadlock.hpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {ncbi::objects::CSeq_id_Handle}; _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator<ncbi::objects::CSeq_id_Handle>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<ncbi::objects::CSeq_id_Handle>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ncbi::objects::CSeq_id_Handle}; _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator<ncbi::objects::CSeq_id_Handle>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator<ncbi::objects::CSeq_id_Handle>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void ncbi::objects::CId2ReaderBase::x_ProcessGetSeqIdSeqId(ncbi::objects::CReaderRequestResult&, ncbi::objects::SId2LoadedSet&, const ncbi::objects::CID2_Reply&, const ncbi::objects::CSeq_id_Handle&, const ncbi::objects::CID2_Request_Get_Seq_id&, const ncbi::objects::CID2_Reply_Get_Seq_id*)’ at /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:2555:30:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/map:61:
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = ncbi::objects::CSeq_id_Handle; _Tp = std::pair<int, std::vector<ncbi::objects::CSeq_id_Handle> >; _Compare = std::less<ncbi::objects::CSeq_id_Handle>; _Alloc = std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, std::pair<int, std::vector<ncbi::objects::CSeq_id_Handle> > > >]’,
inlined from ‘void ncbi::objects::CId2ReaderBase::x_ProcessGetSeqIdSeqId(ncbi::objects::CReaderRequestResult&, ncbi::objects::SId2LoadedSet&, const ncbi::objects::CID2_Reply&, const ncbi::objects::CSeq_id_Handle&, const ncbi::objects::CID2_Request_Get_Seq_id&, const ncbi::objects::CID2_Reply_Get_Seq_id*)’ at /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:2565:40:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<ncbi::objects::CSeq_id_Handle, std::pair<const ncbi::objects::CSeq_id_Handle, std::pair<int, std::vector<ncbi::objects::CSeq_id_Handle> > >, std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle, std::pair<int, std::vector<ncbi::objects::CSeq_id_Handle> > > >, std::less<ncbi::objects::CSeq_id_Handle>, std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, std::pair<int, std::vector<ncbi::objects::CSeq_id_Handle> > > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = ncbi::objects::CSeq_id_Handle; _Tp = std::pair<int, std::vector<ncbi::objects::CSeq_id_Handle> >; _Compare = std::less<ncbi::objects::CSeq_id_Handle>; _Alloc = std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, std::pair<int, std::vector<ncbi::objects::CSeq_id_Handle> > > >]’,
inlined from ‘void ncbi::objects::CId2ReaderBase::x_ProcessGetSeqIdSeqId(ncbi::objects::CReaderRequestResult&, ncbi::objects::SId2LoadedSet&, const ncbi::objects::CID2_Reply&, const ncbi::objects::CSeq_id_Handle&, const ncbi::objects::CID2_Request_Get_Seq_id&, const ncbi::objects::CID2_Reply_Get_Seq_id*)’ at /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:2566:40:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<ncbi::objects::CSeq_id_Handle, std::pair<const ncbi::objects::CSeq_id_Handle, std::pair<int, std::vector<ncbi::objects::CSeq_id_Handle> > >, std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle, std::pair<int, std::vector<ncbi::objects::CSeq_id_Handle> > > >, std::less<ncbi::objects::CSeq_id_Handle>, std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, std::pair<int, std::vector<ncbi::objects::CSeq_id_Handle> > > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
mat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp -o seqdbobj.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp -o seqdb_lmdb.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqdblmdbset.cpp -o seqdblmdbset.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/seqidlist_reader.cpp -o seqidlist_reader.o
/bin/rm -f libseqdb.so .libseqdb.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libseqdb.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC seqdb.o seqdbbitset.o seqdbfilter.o seqdbatlas.o seqdbalias.o seqdbcommon.o seqdbfile.o seqdbimpl.o seqdbvol.o seqdbvolset.o seqdboidlist.o seqdbisam.o seqdbtax.o seqdbgilistset.o seqdbexpert.o seqdbblob.o seqdbcol.o seqdbgimask.o seqdbobj.o seqdb_lmdb.o seqdblmdbset.o seqidlist_reader.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lblastdb -lxobjmgr -lseq -lgeneral -lxser -lsequtil -lxncbi -llmdb -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqdb.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libseqdb.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libseqdb.so
/bin/ln -f .seqdb.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.seqdb.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_reader'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_reader'
cd objtools/data_loaders/blastdb/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=ncbi_xloader_blastdb UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/blastdb'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
cd objtools/blast/seqdb_writer/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=writedb UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_writer'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_writer'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/blastdb'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/blastdb'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_writer'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_writer'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/blastdb'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_writer'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/blastdb'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer TMPL=writedb -w -j4 --jobserver-auth=7,8 all
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/blastdb/cached_sequence.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:38:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:38:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_loadlock.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_writer/writedb_convert.hpp:45,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:42,
from /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_writer/writedb_convert.hpp:45,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:42,
from /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/writedb_volume.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_writer/writedb_convert.hpp:45,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:42,
from /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/writedb_volume.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/writedb_impl.hpp:47,
from /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/writedb.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_writer/writedb_error.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_writer/writedb.hpp:41,
from /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/writedb_volume.hpp:41:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_writer/writedb_error.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_writer/writedb.hpp:41,
from /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/writedb.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/seq/Align_def_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/seq/Align_def.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/objects/seq/seq__.hpp:1,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_writer/writedb_general.hpp:45,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:41:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> >&}; _Tp = std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> >; _Alloc = std::allocator<std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> > >]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> > >::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> >; _Alloc = std::allocator<std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> > >]’,
inlined from ‘void ncbi::objects::CCachedSequence::x_AddSplitSeqChunk(TCTSE_Chunk_InfoVector&, const ncbi::objects::CSeq_id_Handle&, ncbi::TSeqPos, ncbi::TSeqPos)’ at /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp:168:22:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> >*, std::vector<std::pair<ncbi::objects::CSeq_id_Handle, ncbi::CRange<unsigned int> > > >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/12/bits/stl_algo.h:60,
from /usr/include/c++/12/algorithm:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:180:
/usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Distance = int; _Tp = long long int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1802 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1908 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from ‘void ncbi::CBinaryListBuilder::Write(ncbi::CNcbiOstream&)’ at /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/writedb.cpp:239:9:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31,
inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from ‘void ncbi::CBinaryListBuilder::Write(ncbi::CNcbiOstream&)’ at /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/writedb.cpp:239:9:
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator<long long int>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<long long int>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘void ncbi::CWriteDB_GiIndex::AddGi(ncbi::TGi)’ at /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/writedb_volume.hpp:66:23,
inlined from ‘bool ncbi::CWriteDB_Volume::WriteSequence(const std::string&, const std::string&, const std::string&, const TIdList&, int, int, const TBlobList&, int)’ at /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp:268:25:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_writer'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/writedb.cpp -o writedb.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp -o writedb_impl.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp -o writedb_volume.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp -o writedb_files.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp -o writedb_isam.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/writedIn file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_writer/writedb_convert.hpp:45,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:42,
from /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/writedb_volume.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/writedb_impl.hpp:47,
from /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp:44:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_writer/writedb_error.hpp:42,
from /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp:34:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/blastdb'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp -o bdbloader.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp -o cached_sequence.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp -o local_blastdb_adapter.o
/bin/rm -f libncbi_xloader_blastdb.so .libncbi_xloader_blastdb.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libncbi_xloader_blastdb.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC bdbloader.o cached_sequence.o local_blastdb_adapter.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lseqdb -lxobjmgr -lseqset -lseq -lxncbi -llmdb -lpthread -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libncbi_xloader_blastdb.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libncbi_xloader_blastdb.so
/bin/ln -f .ncbi_xloader_blastdb.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.ncbi_xloader_blastdb.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/blastdb'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/blastdb'
cd objtools/blast/services/unit_test/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=blast_services_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/services/unit_test'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/services/unit_test'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/services/unit_test'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/services/unit_test'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/services/unit_test'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objtools/blast/services/unit_test TMPL=blast_services_unit_test -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/objtools/blast/services/unit_test/blast_services_test.cpp:66:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_writer/writedb_convert.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp:37:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/util/sequtil/sequtil_convert.hpp:34,
from /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp:34:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_writer/writedb_convert.hpp:45,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:42,
from /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/writedb_gimask.hpp:42,
from /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_writer/writedb_error.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_writer/writedb.hpp:41,
from /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_writer/writedb_convert.hpp:45,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:42,
from /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/writedb_column.hpp:41,
from /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_writer/writedb_error.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_writer/writedb.hpp:41,
from /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /usr/include/c++/12/algorithm:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:180:
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long int, pair<int, int> >*, vector<pair<long long int, pair<int, int> > > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, std::pair<int, int> >*, std::vector<std::pair<long long int, std::pair<int, int> > > >’ changed in GCC 7.1
1782 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long int, pair<int, int> >*, vector<pair<long long int, pair<int, int> > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, std::pair<int, int> >*, std::vector<std::pair<long long int, std::pair<int, int> > > >’ changed in GCC 7.1
1802 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, std::pair<int, int> >*, std::vector<std::pair<long long int, std::pair<int, int> > > >’ changed in GCC 7.1
In file included from /usr/include/c++/12/bits/stl_algo.h:60:
/usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long int, pair<int, int> >*, vector<pair<long long int, pair<int, int> > > >; _Distance = int; _Tp = pair<long long int, pair<int, int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, std::pair<int, int> >*, std::vector<std::pair<long long int, std::pair<int, int> > > >’ changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long int, pair<int, int> >*, vector<pair<long long int, pair<int, int> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, std::pair<int, int> >*, std::vector<std::pair<long long int, std::pair<int, int> > > >’ changed in GCC 7.1
1908 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, std::pair<int, int> >*, std::vector<std::pair<long long int, std::pair<int, int> > > >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, std::pair<int, int> >*, std::vector<std::pair<long long int, std::pair<int, int> > > >’ changed in GCC 7.1
1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long int, pair<int, int> >*, vector<pair<long long int, pair<int, int> > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<pair<long long int, pair<int, int> >*, vector<pair<long long int, pair<int, int> > > >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from ‘void ncbi::CWriteDB_GiMask::Close()’ at /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp:107:9:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, std::pair<int, int> >*, std::vector<std::pair<long long int, std::pair<int, int> > > >’ changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long int, pair<int, int> >*, vector<pair<long long int, pair<int, int> > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long int, pair<int, int> >*, vector<pair<long long int, pair<int, int> > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31,
inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<pair<long long int, pair<int, int> >*, vector<pair<long long int, pair<int, int> > > >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from ‘void ncbi::CWriteDB_GiMask::Close()’ at /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp:107:9:
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, std::pair<int, int> >*, std::vector<std::pair<long long int, std::pair<int, int> > > >’ changed in GCC 7.1
1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, std::pair<int, int> >*, std::vector<std::pair<long long int, std::pair<int, int> > > >’ changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair<long long int, std::pair<int, int> >}; _Tp = std::pair<long long int, std::pair<int, int> >; _Alloc = std::allocator<std::pair<long long int, std::pair<int, int> > >]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<std::pair<long long int, std::pair<int, int> > >::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<long long int, std::pair<int, int> >}; _Tp = std::pair<long long int, std::pair<int, int> >; _Alloc = std::allocator<std::pair<long long int, std::pair<int, int> > >]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair<long long int, std::pair<int, int> >; _Alloc = std::allocator<std::pair<long long int, std::pair<int, int> > >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void ncbi::CWriteDB_GiMask::AddGiMask(const std::vector<long long int>&, const TPairVector&)’ at /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp:86:29:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, std::pair<int, int> >*, std::vector<std::pair<long long int, std::pair<int, int> > > >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_writer/writedb_convert.hpp:45,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_writer/writedb_isam.hpp:44,
from /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbictype.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistre.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_stack.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp: In member function ‘void ncbi::CWriteDB_IsamIndex::x_AddPdb(int, const ncbi::objects::CSeq_id&)’:
/<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp:659:9: warning: unused variable ‘len’ [-Wunused-variable]
659 | int len = short_id.size();
| ^~~
b_gimask.cpp -o writedb_gimask.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp -o writedb_convert.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp -o writedb_general.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp -o writedb_column.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp -o mask_info_registry.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp -o taxid_set.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/build_db.cpp -o build_db.o
/usr/bin/g++ -std=gnu++14 -c -Wall -WnoIn file included from /usr/include/c++/12/algorithm:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:180:
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::CWriteDB_IsamIndex::SIdOid*, vector<ncbi::CWriteDB_IsamIndex::SIdOid> >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::CWriteDB_IsamIndex::SIdOid*, std::vector<ncbi::CWriteDB_IsamIndex::SIdOid> >’ changed in GCC 7.1
1782 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/bits/stl_algo.h:60:
/usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::CWriteDB_IsamIndex::SIdOid*, vector<ncbi::CWriteDB_IsamIndex::SIdOid> >; _Distance = int; _Tp = ncbi::CWriteDB_IsamIndex::SIdOid; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::CWriteDB_IsamIndex::SIdOid*, std::vector<ncbi::CWriteDB_IsamIndex::SIdOid> >’ changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const ncbi::CWriteDB_IsamIndex::SIdOid&}; _Tp = ncbi::CWriteDB_IsamIndex::SIdOid; _Alloc = std::allocator<ncbi::CWriteDB_IsamIndex::SIdOid>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<ncbi::CWriteDB_IsamIndex::SIdOid>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ncbi::CWriteDB_IsamIndex::SIdOid; _Alloc = std::allocator<ncbi::CWriteDB_IsamIndex::SIdOid>]’,
inlined from ‘void ncbi::CWriteDB_IsamIndex::x_AddTraceIds(int, const TIdList&)’ at /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp:529:36:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::CWriteDB_IsamIndex::SIdOid*, std::vector<ncbi::CWriteDB_IsamIndex::SIdOid> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ncbi::CWriteDB_IsamIndex::SIdOid; _Alloc = std::allocator<ncbi::CWriteDB_IsamIndex::SIdOid>]’,
inlined from ‘void ncbi::CWriteDB_IsamIndex::x_AddGis(int, const TIdList&)’ at /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp:510:36:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::CWriteDB_IsamIndex::SIdOid*, std::vector<ncbi::CWriteDB_IsamIndex::SIdOid> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ncbi::CWriteDB_IsamIndex::SIdOid; _Alloc = std::allocator<ncbi::CWriteDB_IsamIndex::SIdOid>]’,
inlined from ‘void ncbi::CWriteDB_IsamIndex::AddPig(int, int)’ at /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp:491:28:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::CWriteDB_IsamIndex::SIdOid*, std::vector<ncbi::CWriteDB_IsamIndex::SIdOid> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::CWriteDB_IsamIndex::SIdOid*, vector<ncbi::CWriteDB_IsamIndex::SIdOid> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::CWriteDB_IsamIndex::SIdOid*, std::vector<ncbi::CWriteDB_IsamIndex::SIdOid> >’ changed in GCC 7.1
1802 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::CWriteDB_IsamIndex::SIdOid*, std::vector<ncbi::CWriteDB_IsamIndex::SIdOid> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator<ncbi::CWriteDB_IsamIndex::SIdOid*, vector<ncbi::CWriteDB_IsamIndex::SIdOid> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:82:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::CWriteDB_IsamIndex::SIdOid*, std::vector<ncbi::CWriteDB_IsamIndex::SIdOid> >’ changed in GCC 7.1
82 | __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b,
| ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:82:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::CWriteDB_IsamIndex::SIdOid*, std::vector<ncbi::CWriteDB_IsamIndex::SIdOid> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:82:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::CWriteDB_IsamIndex::SIdOid*, std::vector<ncbi::CWriteDB_IsamIndex::SIdOid> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:82:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::CWriteDB_IsamIndex::SIdOid*, std::vector<ncbi::CWriteDB_IsamIndex::SIdOid> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::CWriteDB_IsamIndex::SIdOid*, vector<ncbi::CWriteDB_IsamIndex::SIdOid> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::CWriteDB_IsamIndex::SIdOid*, std::vector<ncbi::CWriteDB_IsamIndex::SIdOid> >’ changed in GCC 7.1
1908 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::CWriteDB_IsamIndex::SIdOid*, std::vector<ncbi::CWriteDB_IsamIndex::SIdOid> >’ changed in GCC 7.1
In function ‘_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::CWriteDB_IsamIndex::SIdOid*, vector<ncbi::CWriteDB_IsamIndex::SIdOid> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::CWriteDB_IsamIndex::SIdOid*, vector<ncbi::CWriteDB_IsamIndex::SIdOid> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:1921:38:
/usr/include/c++/12/bits/stl_algo.h:1887:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::CWriteDB_IsamIndex::SIdOid*, std::vector<ncbi::CWriteDB_IsamIndex::SIdOid> >’ changed in GCC 7.1
1887 | std::__move_median_to_first(__first, __first + 1, __mid, __last - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1888 | __comp);
| ~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1887:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::CWriteDB_IsamIndex::SIdOid*, std::vector<ncbi::CWriteDB_IsamIndex::SIdOid> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::CWriteDB_IsamIndex::SIdOid*, vector<ncbi::CWriteDB_IsamIndex::SIdOid> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::CWriteDB_IsamIndex::SIdOid*, std::vector<ncbi::CWriteDB_IsamIndex::SIdOid> >’ changed in GCC 7.1
1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::CWriteDB_IsamIndex::SIdOid*, vector<ncbi::CWriteDB_IsamIndex::SIdOid> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<ncbi::CWriteDB_IsamIndex::SIdOid*, vector<ncbi::CWriteDB_IsamIndex::SIdOid> >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from ‘void ncbi::CWriteDB_IsamIndex::x_FlushNumericIndex()’ at /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp:381:9:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::CWriteDB_IsamIndex::SIdOid*, std::vector<ncbi::CWriteDB_IsamIndex::SIdOid> >’ changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::CWriteDB_IsamIndex::SIdOid*, vector<ncbi::CWriteDB_IsamIndex::SIdOid> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::CWriteDB_IsamIndex::SIdOid*, vector<ncbi::CWriteDB_IsamIndex::SIdOid> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31,
inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<ncbi::CWriteDB_IsamIndex::SIdOid*, vector<ncbi::CWriteDB_IsamIndex::SIdOid> >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from ‘void ncbi::CWriteDB_IsamIndex::x_FlushNumericIndex()’ at /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp:381:9:
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::CWriteDB_IsamIndex::SIdOid*, std::vector<ncbi::CWriteDB_IsamIndex::SIdOid> >’ changed in GCC 7.1
1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::CWriteDB_IsamIndex::SIdOid*, std::vector<ncbi::CWriteDB_IsamIndex::SIdOid> >’ changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/mod_reader.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/build_db.cpp:40:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbithr_conf.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimtx.hpp:62,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbienv.hpp:40,
from /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/build_db.cpp:34:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/build_db.cpp:44:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/build_db.cpp:45:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/build_db.cpp: In constructor ‘ncbi::CFastaBioseqSource::CFastaBioseqSource(ncbi::CNcbiIstream&, bool, bool, bool)’:
/<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/build_db.cpp:709:32: warning: ‘ncbi::objects::CFastaReader::fAllSeqIds’ is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations]
709 | int iflags = CFastaReader::fAllSeqIds |
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here
92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note)
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/build_db.cpp:709:32: warning: ‘ncbi::objects::CFastaReader::fAllSeqIds’ is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations]
709 | int iflags = CFastaReader::fAllSeqIds |
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here
92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note)
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/build_db.cpp:720:33: warning: ‘ncbi::objects::CFastaReader::fAllSeqIds’ is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations]
720 | iflags |= CFastaReader::fAllSeqIds | CFastaReader::fRequireID;
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here
92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note)
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/build_db.cpp:720:33: warning: ‘ncbi::objects::CFastaReader::fAllSeqIds’ is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations]
720 | iflags |= CFastaReader::fAllSeqIds | CFastaReader::fRequireID;
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here
92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note)
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp: In member function ‘void ncbi::CWriteDB_LMDB::x_CommitTransaction()’:
/<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp:295:55: warning: ‘unsigned int ncbi::GetCpuCount()’ is deprecated [-Wdeprecated-declarations]
295 | unsigned int num_threads = GetCpuCount();
| ~~~~~~~~~~~^~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbifile.hpp:53,
from /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp:35:
/<<PKGBUILDDIR>>/c++/include/corelib/ncbi_system.hpp:479:14: note: declared here
479 | unsigned int GetCpuCount(void)
| ^~~~~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {ncbi::CSeqDBGiList::SGiOid}; _Tp = ncbi::CSeqDBGiList::SGiOid; _Alloc = std::allocator<ncbi::CSeqDBGiList::SGiOid>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<ncbi::CSeqDBGiList::SGiOid>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ncbi::CSeqDBGiList::SGiOid}; _Tp = ncbi::CSeqDBGiList::SGiOid; _Alloc = std::allocator<ncbi::CSeqDBGiList::SGiOid>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = ncbi::CSeqDBGiList::SGiOid; _Alloc = std::allocator<ncbi::CSeqDBGiList::SGiOid>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void ncbi::CInputGiList::AppendGi(ncbi::TGi, int)’ at /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_writer/multisource_util.hpp:114:28,
inlined from ‘ncbi::CRef<ncbi::CInputGiList> ncbi::CBuildDatabase::x_ResolveGis(const std::vector<std::__cxx11::basic_string<char> >&)’ at /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/build_db.cpp:160:30:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::CSeqDBGiList::SGiOid*, std::vector<ncbi::CSeqDBGiList::SGiOid> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ncbi::CSeqDBGiList::SGiOid}; _Tp = ncbi::CSeqDBGiList::SGiOid; _Alloc = std::allocator<ncbi::CSeqDBGiList::SGiOid>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = ncbi::CSeqDBGiList::SGiOid; _Alloc = std::allocator<ncbi::CSeqDBGiList::SGiOid>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void ncbi::CInputGiList::AppendGi(ncbi::TGi, int)’ at /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_writer/multisource_util.hpp:114:28,
inlined from ‘ncbi::CRef<ncbi::CInputGiList> ncbi::CBuildDatabase::x_ResolveGis(const std::vector<std::__cxx11::basic_string<char> >&)’ at /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/build_db.cpp:172:34:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::CSeqDBGiList::SGiOid*, std::vector<ncbi::CSeqDBGiList::SGiOid> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<long long int>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void ncbi::CBuildDatabase::x_AddMasksForSeqId(const std::__cxx11::list<ncbi::CRef<ncbi::objects::CSeq_id> >&)’ at /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/build_db.cpp:461:26:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/map:60,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:45:
/usr/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, long long int>; _KeyOfValue = std::_Select1st<std::pair<const int, long long int> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, long long int> >]’:
/usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, long long int>, std::_Select1st<std::pair<const int, long long int> >, std::less<int>, std::allocator<std::pair<const int, long long int> > >::const_iterator’ changed in GCC 7.1
2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘bool ncbi::CBuildDatabase::AddSequences(ncbi::IRawSequenceSource&)’ at /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/build_db.cpp:1001:42:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/map:61:
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = long long int; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, long long int> >]’,
inlined from ‘bool ncbi::CBuildDatabase::AddIds(const std::vector<std::__cxx11::basic_string<char> >&)’ at /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/build_db.cpp:1347:41:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, long long int>, std::_Select1st<std::pair<const int, long long int> >, std::less<int>, std::allocator<std::pair<const int, long long int> > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = long long int; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, long long int> >]’,
inlined from ‘bool ncbi::CBuildDatabase::AddIds(const std::vector<std::__cxx11::basic_string<char> >&)’ at /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/build_db.cpp:1351:54:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, long long int>, std::_Select1st<std::pair<const int, long long int> >, std::less<int>, std::allocator<std::pair<const int, long long int> > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp -o multisource_util.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/criteria.cpp -o criteria.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp -o writedb_lmdb.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/seqidlist_writer.cpp -o seqidlist_writer.o
/bin/rm -f libwritedb.so .libwritedb.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libwritedb.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC writedb.o writedb_impl.o writedb_volume.o writedb_files.o writedb_isam.o writedb_gimask.o writedb_convert.o writedb_general.o writedb_column.o mask_info_registry.o taxid_set.o build_db.o multisource_util.o criteria.o writedb_lmdb.o seqidlist_writer.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lseqdb -lxobjread -lxobjmgr -lblastdb -lseqset -lseq -lgeneral -lxser -lsequtil -lxutil -lxncbi -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libwritedb.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libwritedb.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libwritedb.so
/bin/ln -f .writedb.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.writedb.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_writer'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_writer'
cd objtools/data_loaders/blastdb/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=ncbi_xloader_blastdb_rmt UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/blastdb'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/blastdb'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/blastdb'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/blastdb'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/blastdb'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb_rmt -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/blastdb/bdbloader_rmt.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/blastdb/bdbloader_rmt.hpp:38:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_loadlock.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/services/unit_test'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blast_services_unit_test /<<PKGBUILDDIR>>/c++/src/objtools/blast/services/unit_test/blast_services_test.cpp -o blast_services_test.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blast_services_test.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -ltest_boost -lblast_services -lxnetblastcli -lxnetblast -lseqdb -lblastdb -lscoremat -lxconnect -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -llmdb -lpthread -lm -lpthread -o blast_services_unit_test
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_services_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f blast_services_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin/blast_services_unit_test
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/services/unit_test'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/services/unit_test'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/blastdb'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp -o bdbloader_rmt.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp -o remote_blastdb_adapter.o
/bin/rm -f libncbi_xloader_blastdb_rmt.so .libncbi_xloader_blastdb_rmt.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libncbi_xloader_blastdb_rmt.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC bdbloader_rmt.o remote_blastdb_adapter.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lncbi_xloader_blastdb -lblast_services -lxobjmgr -lseq -lxncbi -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb_rmt.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libncbi_xloader_blastdb_rmt.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libncbi_xloader_blastdb_rmt.so
/bin/ln -f .ncbi_xloader_blastdb_rmt.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.ncbi_xloader_blastdb_rmt.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/blastdb'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/blastdb'
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/objmgr/util/seqtitle.cpp:62:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/iterator.hpp:35,
from /<<PKGBUILDDIR>>/c++/src/objmgr/util/seqtitle.cpp:34:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:54,
from /<<PKGBUILDDIR>>/c++/src/objmgr/util/seqtitle.cpp:67:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/mapped_feat.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:40,
from /<<PKGBUILDDIR>>/c++/src/objmgr/util/create_defline.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/util/strsearch.hpp:45,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objmgr/util/create_defline.cpp:54:
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objmgr/util/create_defline.cpp: In member function ‘void ncbi::objects::sequence::CDeflineGenerator::x_SetTitleFromProteinIdx(const ncbi::objects::CBioseq_Handle&)’:
/<<PKGBUILDDIR>>/c++/src/objmgr/util/create_defline.cpp:2146:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2146 | if (offset > 0 && offset < m_MainTitle.length()) {
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objmgr/util/create_defline.cpp: In member function ‘void ncbi::objects::sequence::CDeflineGenerator::x_SetTitleFromProtein(const ncbi::objects::CBioseq_Handle&)’:
/<<PKGBUILDDIR>>/c++/src/objmgr/util/create_defline.cpp:2350:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2350 | if (offset > 0 && offset < m_MainTitle.length()) {
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objmgr/util/create_defline.cpp: In function ‘size_t s_TitleEndsInOrganism(std::string&, ncbi::CTempString)’:
/<<PKGBUILDDIR>>/c++/src/objmgr/util/create_defline.cpp:2986:17: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2986 | if (pos == idx + 2) {
| ~~~~^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objmgr/util/create_defline.cpp: In member function ‘std::string ncbi::objects::sequence::CDeflineGenerator::GenerateDefline(const ncbi::objects::CBioseq_Handle&, TUserFlags)’:
/<<PKGBUILDDIR>>/c++/src/objmgr/util/create_defline.cpp:3966:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
3966 | for (int i = 0; i < sizeof (s_tpaPrefixList) / sizeof (const char*); i++) {
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objmgr/util'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/util/weight.cpp -o weight.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/util/sequence.cpp -o sequence.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/util/feature.cpp -o feature.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/util/indexer.cpp -o indexer.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/util/seqtitle.cpp -o seqtitle.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/util/create_defline.cpp -o create_defline.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/obj_sniff.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/objmgr/util/obj_sniff.cpp:33:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {ncbi::objects::CObjectsSniffer::SObjectDescription}; _Tp = ncbi::objects::CObjectsSniffer::SObjectDescription; _Alloc = std::allocator<ncbi::objects::CObjectsSniffer::SObjectDescription>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<ncbi::objects::CObjectsSniffer::SObjectDescription>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ncbi::objects::CObjectsSniffer::SObjectDescription}; _Tp = ncbi::objects::CObjectsSniffer::SObjectDescription; _Alloc = std::allocator<ncbi::objects::CObjectsSniffer::SObjectDescription>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = ncbi::objects::CObjectsSniffer::SObjectDescription; _Alloc = std::allocator<ncbi::objects::CObjectsSniffer::SObjectDescription>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘bool ncbi::objects::CObjectsSniffer::x_ReadObject(ncbi::CObjectIStream&, ncbi::CObjectTypeInfo)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/util/obj_sniff.cpp:209:32:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CObjectsSniffer::SObjectDescription*, std::vector<ncbi::objects::CObjectsSniffer::SObjectDescription> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/seq_loc_util.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objmgr/util/seq_loc_util.cpp:50:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/src/objmgr/util/seq_loc_util.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:54,
from /<<PKGBUILDDIR>>/c++/src/objmgr/util/seq_loc_util.cpp:51:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objmgr/util/seq_loc_util.cpp: In function ‘bool ncbi::objects::sequence::BadSeqLocSortOrder(const ncbi::objects::CBioseq_Handle&, const ncbi::objects::CSeq_loc&)’:
/<<PKGBUILDDIR>>/c++/src/objmgr/util/seq_loc_util.cpp:612:14: warning: catching polymorphic type ‘class ncbi::CException’ by value [-Wcatch-value=]
612 | } catch (CException) {
| ^~~~~~~~~~
In file included from /usr/include/c++/12/map:60,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:45,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/iterator.hpp:35,
from /<<PKGBUILDDIR>>/c++/src/objmgr/util/seq_loc_util.cpp:35:
/usr/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const ncbi::objects::CSeq_id_Handle&>, std::tuple<>}; _Key = ncbi::objects::CSeq_id_Handle; _Val = std::pair<const ncbi::objects::CSeq_id_Handle, std::pair<ncbi::CRange<unsigned int>, ncbi::CRange<unsigned int> > >; _KeyOfValue = std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle, std::pair<ncbi::CRange<unsigned int>, ncbi::CRange<unsigned int> > > >; _Compare = std::less<ncbi::objects::CSeq_id_Handle>; _Alloc = std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, std::pair<ncbi::CRange<unsigned int>, ncbi::CRange<unsigned int> > > >]’:
/usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree<ncbi::objects::CSeq_id_Handle, std::pair<const ncbi::objects::CSeq_id_Handle, std::pair<ncbi::CRange<unsigned int>, ncbi::CRange<unsigned int> > >, std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle, std::pair<ncbi::CRange<unsigned int>, ncbi::CRange<unsigned int> > > >, std::less<ncbi::objects::CSeq_id_Handle>, std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, std::pair<ncbi::CRange<unsigned int>, ncbi::CRange<unsigned int> > > > >::const_iterator’ changed in GCC 7.1
2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const ncbi::objects::CSeq_id_Handle&>, std::tuple<>}; _Key = ncbi::objects::CSeq_id_Handle; _Val = std::pair<const ncbi::objects::CSeq_id_Handle, std::pair<std::__cxx11::list<ncbi::CRange<unsigned int> >, std::__cxx11::list<ncbi::CRange<unsigned int> > > >; _KeyOfValue = std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle, std::pair<std::__cxx11::list<ncbi::CRange<unsigned int> >, std::__cxx11::list<ncbi::CRange<unsigned int> > > > >; _Compare = std::less<ncbi::objects::CSeq_id_Handle>; _Alloc = std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, std::pair<std::__cxx11::list<ncbi::CRange<unsigned int> >, std::__cxx11::list<ncbi::CRange<unsigned int> > > > >]’:
/usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree<ncbi::objects::CSeq_id_Handle, std::pair<const ncbi::objects::CSeq_id_Handle, std::pair<std::__cxx11::list<ncbi::CRange<unsigned int> >, std::__cxx11::list<ncbi::CRange<unsigned int> > > >, std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle, std::pair<std::__cxx11::list<ncbi::CRange<unsigned int> >, std::__cxx11::list<ncbi::CRange<unsigned int> > > > >, std::less<ncbi::objects::CSeq_id_Handle>, std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, std::pair<std::__cxx11::list<ncbi::CRange<unsigned int> >, std::__cxx11::list<ncbi::CRange<unsigned int> > > > > >::const_iterator’ changed in GCC 7.1
In file included from /usr/include/c++/12/map:61:
/usr/include/c++/12/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = ncbi::objects::CSeq_id_Handle; _Tp = std::pair<std::__cxx11::list<ncbi::CRange<unsigned int> >, std::__cxx11::list<ncbi::CRange<unsigned int> > >; _Compare = std::less<ncbi::objects::CSeq_id_Handle>; _Alloc = std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, std::pair<std::__cxx11::list<ncbi::CRange<unsigned int> >, std::__cxx11::list<ncbi::CRange<unsigned int> > > > >]’:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<ncbi::objects::CSeq_id_Handle, std::pair<const ncbi::objects::CSeq_id_Handle, std::pair<std::__cxx11::list<ncbi::CRange<unsigned int> >, std::__cxx11::list<ncbi::CRange<unsigned int> > > >, std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle, std::pair<std::__cxx11::list<ncbi::CRange<unsigned int> >, std::__cxx11::list<ncbi::CRange<unsigned int> > > > >, std::less<ncbi::objects::CSeq_id_Handle>, std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, std::pair<std::__cxx11::list<ncbi::CRange<unsigned int> >, std::__cxx11::list<ncbi::CRange<unsigned int> > > > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = ncbi::objects::CSeq_id_Handle; _Tp = std::pair<ncbi::CRange<unsigned int>, ncbi::CRange<unsigned int> >; _Compare = std::less<ncbi::objects::CSeq_id_Handle>; _Alloc = std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, std::pair<ncbi::CRange<unsigned int>, ncbi::CRange<unsigned int> > > >]’,
inlined from ‘void ncbi::objects::sequence::s_SeqLocToTotalRangeInfoMap(const ncbi::objects::CSeq_loc&, TTotalRangeInfoMap&, TSynMap&, ncbi::objects::CScope*)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/util/seq_loc_util.cpp:1293:21:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<ncbi::objects::CSeq_id_Handle, std::pair<const ncbi::objects::CSeq_id_Handle, std::pair<ncbi::CRange<unsigned int>, ncbi::CRange<unsigned int> > >, std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle, std::pair<ncbi::CRange<unsigned int>, ncbi::CRange<unsigned int> > > >, std::less<ncbi::objects::CSeq_id_Handle>, std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, std::pair<ncbi::CRange<unsigned int>, ncbi::CRange<unsigned int> > > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = ncbi::objects::CSeq_id_Handle; _Tp = std::pair<ncbi::CRange<unsigned int>, ncbi::CRange<unsigned int> >; _Compare = std::less<ncbi::objects::CSeq_id_Handle>; _Alloc = std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, std::pair<ncbi::CRange<unsigned int>, ncbi::CRange<unsigned int> > > >]’,
inlined from ‘void ncbi::objects::sequence::s_SeqLocToTotalRangeInfoMap(const ncbi::objects::CSeq_loc&, TTotalRangeInfoMap&, TSynMap&, ncbi::objects::CScope*)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/util/seq_loc_util.cpp:1296:21:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<ncbi::objects::CSeq_id_Handle, std::pair<const ncbi::objects::CSeq_id_Handle, std::pair<ncbi::CRange<unsigned int>, ncbi::CRange<unsigned int> > >, std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle, std::pair<ncbi::CRange<unsigned int>, ncbi::CRange<unsigned int> > > >, std::less<ncbi::objects::CSeq_id_Handle>, std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, std::pair<ncbi::CRange<unsigned int>, ncbi::CRange<unsigned int> > > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = ncbi::objects::CSeq_id_Handle; _Tp = std::pair<std::__cxx11::list<ncbi::CRange<unsigned int> >, std::__cxx11::list<ncbi::CRange<unsigned int> > >; _Compare = std::less<ncbi::objects::CSeq_id_Handle>; _Alloc = std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, std::pair<std::__cxx11::list<ncbi::CRange<unsigned int> >, std::__cxx11::list<ncbi::CRange<unsigned int> > > > >]’,
inlined from ‘void ncbi::objects::sequence::s_SeqLocToRangeInfoMapByStrand(const ncbi::objects::CSeq_loc&, TRangeInfoMapByStrand&, TSynMap&, ncbi::objects::CScope*)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/util/seq_loc_util.cpp:1335:21:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<ncbi::objects::CSeq_id_Handle, std::pair<const ncbi::objects::CSeq_id_Handle, std::pair<std::__cxx11::list<ncbi::CRange<unsigned int> >, std::__cxx11::list<ncbi::CRange<unsigned int> > > >, std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle, std::pair<std::__cxx11::list<ncbi::CRange<unsigned int> >, std::__cxx11::list<ncbi::CRange<unsigned int> > > > >, std::less<ncbi::objects::CSeq_id_Handle>, std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, std::pair<std::__cxx11::list<ncbi::CRange<unsigned int> >, std::__cxx11::list<ncbi::CRange<unsigned int> > > > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = ncbi::objects::CSeq_id_Handle; _Tp = std::pair<std::__cxx11::list<ncbi::CRange<unsigned int> >, std::__cxx11::list<ncbi::CRange<unsigned int> > >; _Compare = std::less<ncbi::objects::CSeq_id_Handle>; _Alloc = std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, std::pair<std::__cxx11::list<ncbi::CRange<unsigned int> >, std::__cxx11::list<ncbi::CRange<unsigned int> > > > >]’,
inlined from ‘void ncbi::objects::sequence::s_SeqLocToRangeInfoMapByStrand(const ncbi::objects::CSeq_loc&, TRangeInfoMapByStrand&, TSynMap&, ncbi::objects::CScope*)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/util/seq_loc_util.cpp:1338:21:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<ncbi::objects::CSeq_id_Handle, std::pair<const ncbi::objects::CSeq_id_Handle, std::pair<std::__cxx11::list<ncbi::CRange<unsigned int> >, std::__cxx11::list<ncbi::CRange<unsigned int> > > >, std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle, std::pair<std::__cxx11::list<ncbi::CRange<unsigned int> >, std::__cxx11::list<ncbi::CRange<unsigned int> > > > >, std::less<ncbi::objects::CSeq_id_Handle>, std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, std::pair<std::__cxx11::list<ncbi::CRange<unsigned int> >, std::__cxx11::list<ncbi::CRange<unsigned int> > > > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = ncbi::objects::CSeq_id_Handle; _Tp = std::pair<std::__cxx11::list<ncbi::CRange<unsigned int> >, std::__cxx11::list<ncbi::CRange<unsigned int> > >; _Compare = std::less<ncbi::objects::CSeq_id_Handle>; _Alloc = std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, std::pair<std::__cxx11::list<ncbi::CRange<unsigned int> >, std::__cxx11::list<ncbi::CRange<unsigned int> > > > >]’,
inlined from ‘void ncbi::objects::sequence::s_SeqLocToTotalRangesInfoMapByStrand(const ncbi::objects::CSeq_loc&, TRangeInfoMapByStrand&, TSynMap&, TTopologyMap&, TOverlapFlags, ncbi::objects::CScope*)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/util/seq_loc_util.cpp:1442:30:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<ncbi::objects::CSeq_id_Handle, std::pair<const ncbi::objects::CSeq_id_Handle, std::pair<std::__cxx11::list<ncbi::CRange<unsigned int> >, std::__cxx11::list<ncbi::CRange<unsigned int> > > >, std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle, std::pair<std::__cxx11::list<ncbi::CRange<unsigned int> >, std::__cxx11::list<ncbi::CRange<unsigned int> > > > >, std::less<ncbi::objects::CSeq_id_Handle>, std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, std::pair<std::__cxx11::list<ncbi::CRange<unsigned int> >, std::__cxx11::list<ncbi::CRange<unsigned int> > > > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = ncbi::objects::CSeq_id_Handle; _Tp = std::pair<std::__cxx11::list<ncbi::CRange<unsigned int> >, std::__cxx11::list<ncbi::CRange<unsigned int> > >; _Compare = std::less<ncbi::objects::CSeq_id_Handle>; _Alloc = std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, std::pair<std::__cxx11::list<ncbi::CRange<unsigned int> >, std::__cxx11::list<ncbi::CRange<unsigned int> > > > >]’,
inlined from ‘void ncbi::objects::sequence::s_SeqLocToTotalRangesInfoMapByStrand(const ncbi::objects::CSeq_loc&, TRangeInfoMapByStrand&, TSynMap&, TTopologyMap&, TOverlapFlags, ncbi::objects::CScope*)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/util/seq_loc_util.cpp:1445:30:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<ncbi::objects::CSeq_id_Handle, std::pair<const ncbi::objects::CSeq_id_Handle, std::pair<std::__cxx11::list<ncbi::CRange<unsigned int> >, std::__cxx11::list<ncbi::CRange<unsigned int> > > >, std::_Select1st<std::pair<const ncbi::objects::CSeq_id_Handle, std::pair<std::__cxx11::list<ncbi::CRange<unsigned int> >, std::__cxx11::list<ncbi::CRange<unsigned int> > > > >, std::less<ncbi::objects::CSeq_id_Handle>, std::allocator<std::pair<const ncbi::objects::CSeq_id_Handle, std::pair<std::__cxx11::list<ncbi::CRange<unsigned int> >, std::__cxx11::list<ncbi::CRange<unsigned int> > > > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objmgr/util/seq_align_util.cpp:41:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/seqloc/Seq_id_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/seqloc/Seq_id.hpp:42,
from /<<PKGBUILDDIR>>/c++/src/objmgr/util/seq_align_util.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:54,
from /<<PKGBUILDDIR>>/c++/src/objmgr/util/seq_align_util.cpp:42:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_types_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/feat_ci.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:50,
from /<<PKGBUILDDIR>>/c++/src/objmgr/util/seq_trimmer.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:54:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objmgr/util/seq_trimmer.cpp: In function ‘ncbi::objects::CSequenceAmbigTrimmer::TTrimRuleVec* ncbi::objects::{anonymous}::s_DefaultRuleCreator()’:
/<<PKGBUILDDIR>>/c++/src/objmgr/util/seq_trimmer.cpp:142:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
142 | auto_ptr<CSequenceAmbigTrimmer::TTrimRuleVec> pTrimRuleVec( new CSequenceAmbigTrimmer::TTrimRuleVec );
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_types_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/feat_ci.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:50,
from /<<PKGBUILDDIR>>/c++/src/objmgr/util/bioseqgaps_ci.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:54:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/objmgr/util/objutil.cpp:51:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objmgr/util/objutil.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objmgr/util/objutil.cpp:54:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objmgr/util/objutil.cpp:55:
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objmgr/util/objutil.cpp: In instantiation of ‘bool ncbi::objects::{anonymous}::s_IsTagStart(const _T&, const _T&) [with _T = const char*]’:
/<<PKGBUILDDIR>>/c++/src/objmgr/util/objutil.cpp:1824:61: required from here
/<<PKGBUILDDIR>>/c++/src/objmgr/util/objutil.cpp:1752:57: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const unsigned int’} [-Wsign-compare]
1752 | for (int possible_str_idx = 0; possible_str_idx < num_possible_tag_starts; ++possible_str_idx) {
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objmgr/util/objutil.cpp:1114:13: warning: ‘bool ncbi::objects::s_IsValidAccession(const std::string&)’ defined but not used [-Wunused-function]
1114 | static bool s_IsValidAccession(const string& acc)
| ^~~~~~~~~~~~~~~~~~
D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/util/obj_sniff.cpp -o obj_sniff.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/util/seq_loc_util.cpp -o seq_loc_util.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/util/seq_align_util.cpp -o seq_align_util.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/util/seq_trimmer.cpp -o seq_trimmer.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/util/bioseqgaps_ci.cpp -o bioseqgaps_ci.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/util/objutil.cpp -o objutil.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/util/feature_edit.cIn file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/mapped_feat.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objmgr/util/feature_edit.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objmgr/util/feature_edit.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_types_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/feat_ci.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/autodef.hpp:47,
from /<<PKGBUILDDIR>>/c++/src/objmgr/util/autodef.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/autodef.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:54,
from /<<PKGBUILDDIR>>/c++/src/objmgr/util/autodef.cpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_types_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/feat_ci.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/autodef.hpp:47,
from /<<PKGBUILDDIR>>/c++/src/objmgr/util/autodef_feature_clause_base.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/autodef.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:54,
from /<<PKGBUILDDIR>>/c++/src/objmgr/util/autodef_feature_clause_base.cpp:40:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_types_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/feat_ci.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objmgr/util/autodef_source_desc.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/autodef_source_desc.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/objmgr/util/autodef_source_desc.cpp:34:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_types_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/feat_ci.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/autodef.hpp:47,
from /<<PKGBUILDDIR>>/c++/src/objmgr/util/autodef_available_modifier.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/autodef.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objmgr/util/autodef_available_modifier.cpp: In static member function ‘static std::string ncbi::objects::CAutoDefAvailableModifier::GetSubSourceLabel(ncbi::objects::CSubSource_Base::ESubtype)’:
/<<PKGBUILDDIR>>/c++/src/objmgr/util/autodef_available_modifier.cpp:348:14: warning: catching polymorphic type ‘class ncbi::CException’ by value [-Wcatch-value=]
348 | } catch (CException) {
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objmgr/util/autodef_available_modifier.cpp: In static member function ‘static std::string ncbi::objects::CAutoDefAvailableModifier::GetOrgModLabel(ncbi::objects::COrgMod_Base::ESubtype)’:
/<<PKGBUILDDIR>>/c++/src/objmgr/util/autodef_available_modifier.cpp:390:14: warning: catching polymorphic type ‘class ncbi::CException’ by value [-Wcatch-value=]
390 | } catch (CException) {
| ^~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_types_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/feat_ci.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objmgr/util/autodef_mod_combo.cpp:37:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbictype.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistre.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_stack.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/objmgr/util/autodef_mod_combo.cpp:34:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objmgr/util/autodef_mod_combo.cpp: In member function ‘bool ncbi::objects::CAutoDefModifierCombo::AddQual(bool, int, bool)’:
/<<PKGBUILDDIR>>/c++/src/objmgr/util/autodef_mod_combo.cpp:1033:10: warning: unused variable ‘added’ [-Wunused-variable]
1033 | bool added = false, rval = false;
| ^~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_types_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/feat_ci.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objmgr/util/autodef_source_group.cpp:37:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbictype.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistre.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_stack.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/objmgr/util/autodef_source_group.cpp:34:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
pp -o feature_edit.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/util/autodef.cpp -o autodef.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/util/autodef_feature_clause_base.cpp -o autodef_feature_clause_base.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/util/autodef_source_desc.cpp -o autodef_source_desc.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/util/autodef_available_modifier.cpp -o autodef_available_modifier.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/util/autodef_mod_combo.cpp -o autodef_mod_combo.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/util/autodef_source_group.cpp -o autodef_source_group.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -WfIn file included from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_types_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/feat_ci.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/autodef.hpp:47,
from /<<PKGBUILDDIR>>/c++/src/objmgr/util/autodef_feature_clause.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/autodef.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:54,
from /<<PKGBUILDDIR>>/c++/src/objmgr/util/autodef_feature_clause.cpp:41:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const ncbi::objects::feature::{anonymous}::SFeatRangeInfo&}; _Tp = ncbi::objects::feature::{anonymous}::SFeatRangeInfo; _Alloc = std::allocator<ncbi::objects::feature::{anonymous}::SFeatRangeInfo>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<ncbi::objects::feature::{anonymous}::SFeatRangeInfo>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/bits/stl_algo.h:60,
from /usr/include/c++/12/algorithm:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:180:
/usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::objects::feature::{anonymous}::SFeatRangeInfo*, vector<ncbi::objects::feature::{anonymous}::SFeatRangeInfo> >; _Distance = int; _Tp = ncbi::objects::feature::{anonymous}::SFeatRangeInfo; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<ncbi::objects::feature::{anonymous}::PLessByEnd>]’:
/usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::feature::{anonymous}::SFeatRangeInfo*, std::vector<ncbi::objects::feature::{anonymous}::SFeatRangeInfo> >’ changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::objects::feature::{anonymous}::SFeatRangeInfo*, vector<ncbi::objects::feature::{anonymous}::SFeatRangeInfo> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<ncbi::objects::feature::{anonymous}::PLessByEnd>]’:
/usr/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::feature::{anonymous}::SFeatRangeInfo*, std::vector<ncbi::objects::feature::{anonymous}::SFeatRangeInfo> >’ changed in GCC 7.1
1782 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::objects::feature::{anonymous}::SFeatRangeInfo*, vector<ncbi::objects::feature::{anonymous}::SFeatRangeInfo> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<ncbi::objects::feature::{anonymous}::PLessByEnd>]’:
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::feature::{anonymous}::SFeatRangeInfo*, std::vector<ncbi::objects::feature::{anonymous}::SFeatRangeInfo> >’ changed in GCC 7.1
1802 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::feature::{anonymous}::SFeatRangeInfo*, std::vector<ncbi::objects::feature::{anonymous}::SFeatRangeInfo> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::objects::feature::{anonymous}::SFeatRangeInfo*, vector<ncbi::objects::feature::{anonymous}::SFeatRangeInfo> >; _Distance = int; _Tp = ncbi::objects::feature::{anonymous}::SFeatRangeInfo; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<ncbi::objects::feature::{anonymous}::PLessByStart>]’:
/usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::feature::{anonymous}::SFeatRangeInfo*, std::vector<ncbi::objects::feature::{anonymous}::SFeatRangeInfo> >’ changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::objects::feature::{anonymous}::SFeatRangeInfo*, vector<ncbi::objects::feature::{anonymous}::SFeatRangeInfo> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<ncbi::objects::feature::{anonymous}::PLessByStart>]’:
/usr/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::feature::{anonymous}::SFeatRangeInfo*, std::vector<ncbi::objects::feature::{anonymous}::SFeatRangeInfo> >’ changed in GCC 7.1
1782 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::objects::feature::{anonymous}::SFeatRangeInfo*, vector<ncbi::objects::feature::{anonymous}::SFeatRangeInfo> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<ncbi::objects::feature::{anonymous}::PLessByStart>]’:
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::feature::{anonymous}::SFeatRangeInfo*, std::vector<ncbi::objects::feature::{anonymous}::SFeatRangeInfo> >’ changed in GCC 7.1
1802 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::feature::{anonymous}::SFeatRangeInfo*, std::vector<ncbi::objects::feature::{anonymous}::SFeatRangeInfo> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::objects::feature::{anonymous}::SFeatRangeInfo*, vector<ncbi::objects::feature::{anonymous}::SFeatRangeInfo> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<ncbi::objects::feature::{anonymous}::PLessByEnd>]’:
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::feature::{anonymous}::SFeatRangeInfo*, std::vector<ncbi::objects::feature::{anonymous}::SFeatRangeInfo> >’ changed in GCC 7.1
1908 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::feature::{anonymous}::SFeatRangeInfo*, std::vector<ncbi::objects::feature::{anonymous}::SFeatRangeInfo> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::feature::{anonymous}::SFeatRangeInfo*, std::vector<ncbi::objects::feature::{anonymous}::SFeatRangeInfo> >’ changed in GCC 7.1
1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::objects::feature::{anonymous}::SFeatRangeInfo*, vector<ncbi::objects::feature::{anonymous}::SFeatRangeInfo> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<ncbi::objects::feature::{anonymous}::PLessByStart>]’:
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::feature::{anonymous}::SFeatRangeInfo*, std::vector<ncbi::objects::feature::{anonymous}::SFeatRangeInfo> >’ changed in GCC 7.1
1908 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::feature::{anonymous}::SFeatRangeInfo*, std::vector<ncbi::objects::feature::{anonymous}::SFeatRangeInfo> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::feature::{anonymous}::SFeatRangeInfo*, std::vector<ncbi::objects::feature::{anonymous}::SFeatRangeInfo> >’ changed in GCC 7.1
1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ncbi::objects::feature::{anonymous}::SFeatRangeInfo; _Alloc = std::allocator<ncbi::objects::feature::{anonymous}::SFeatRangeInfo>]’,
inlined from ‘void ncbi::objects::feature::{anonymous}::s_AddRanges(TCanonicalIdsMap&, std::vector<SFeatRangeInfo>&, ncbi::objects::feature::CFeatTree::CFeatInfo&, SBestInfo*, const ncbi::objects::CSeq_loc&)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/util/feature.cpp:1821:25:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::feature::{anonymous}::SFeatRangeInfo*, std::vector<ncbi::objects::feature::{anonymous}::SFeatRangeInfo> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/incr_time.cpp -o incr_time.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/info_cache.cpp -o info_cache.o
/bin/rm -f libncbi_xreader.a .libncbi_xreader.a.stamp
ar cr libncbi_xreader.a dispatcher.o reader.o writer.o processors.o wgsmaster.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o
/bin/rm -f libncbi_xreader.so .libncbi_xreader.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libncbi_xreader.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC dispatcher.o reader.o writer.o processors.o wgsmaster.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lsubmit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lxncbi -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libncbi_xreader.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libncbi_xreader.so
/bin/ln -f .ncbi_xreader.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.ncbi_xreader.dep
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader.a /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libncbi_xreader.a /<<PKGBUILDDIR>>/c++/BUILD/lib/libncbi_xreader.a
/bin/ln -f .ncbi_xreader-static.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.ncbi_xreader-static.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank'
cd objtools/data_loaders/genbank/cache/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=ncbi_xreader_cache UNIX_PROJ="" sources= configurables=configurables.null
cd objtools/data_loaders/genbank/id1/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=ncbi_xreader_id1 UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank/cache'
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank/id1'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
cd objtools/data_loaders/genbank/id2/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=ncbi_xreader_id2 UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank/id2'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank/cache'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank/id1'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank/id2'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank/id1'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank/cache'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank/id2'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank/id1'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank/cache'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank/id2'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank/cache'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank/id1'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank/id2'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/id1 TMPL=ncbi_xreader_id1 -w -j4 --jobserver-auth=7,8 all
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/cache TMPL=ncbi_xreader_cache -w -j4 --jobserver-auth=7,8 all
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/id2 TMPL=ncbi_xreader_id2 -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const std::pair<long long int, ncbi::objects::CMappedFeat>&}; _Tp = std::pair<long long int, ncbi::objects::CMappedFeat>; _Alloc = std::allocator<std::pair<long long int, ncbi::objects::CMappedFeat> >]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<std::pair<long long int, ncbi::objects::CMappedFeat> >::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::pair<long long int, ncbi::objects::CMappedFeat>; _Alloc = std::allocator<std::pair<long long int, ncbi::objects::CMappedFeat> >]’,
inlined from ‘void ncbi::objects::feature::GetOverlappingFeatures(ncbi::objects::CScope&, const ncbi::objects::CSeq_loc&, ncbi::objects::CSeqFeatData_Base::E_Choice, ncbi::objects::CSeqFeatData::ESubtype, ncbi::objects::sequence::EOverlapType, TMappedFeatScores&, const ncbi::objects::SAnnotSelector*)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/util/feature.cpp:3594:32:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, ncbi::objects::CMappedFeat>*, std::vector<std::pair<long long int, ncbi::objects::CMappedFeat> > >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::pair<long long int, ncbi::objects::CMappedFeat>; _Alloc = std::allocator<std::pair<long long int, ncbi::objects::CMappedFeat> >]’,
inlined from ‘void ncbi::objects::feature::GetOverlappingFeatures(ncbi::objects::CScope&, const ncbi::objects::CSeq_loc&, ncbi::objects::CSeqFeatData_Base::E_Choice, ncbi::objects::CSeqFeatData::ESubtype, ncbi::objects::sequence::EOverlapType, TMappedFeatScores&, const ncbi::objects::SAnnotSelector*)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/util/feature.cpp:3617:32:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, ncbi::objects::CMappedFeat>*, std::vector<std::pair<long long int, ncbi::objects::CMappedFeat> > >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ncbi::objects::feature::{anonymous}::SFeatRangeInfo; _Alloc = std::allocator<ncbi::objects::feature::{anonymous}::SFeatRangeInfo>]’,
inlined from ‘bool ncbi::objects::feature::{anonymous}::s_AddCircularRanges(std::vector<SFeatRangeInfo>&, SFeatRangeInfo&, bool)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/util/feature.cpp:1803:21,
inlined from ‘ncbi::objects::feature::{anonymous}::TRangeArray& ncbi::objects::feature::{anonymous}::CFeatTreeParentTypeIndex::GetIndex(ncbi::objects::feature::{anonymous}::TCanonicalIdsMap&, const ncbi::objects::feature::{anonymous}::TInfoArray&)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/util/feature.cpp:1864:46,
inlined from ‘ncbi::objects::feature::{anonymous}::TRangeArray& ncbi::objects::feature::CFeatTreeIndex::GetIndex(ncbi::objects::CSeqFeatData::ESubtype, bool, const ncbi::objects::feature::{anonymous}::TInfoArray&)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/util/feature.cpp:1904:31:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::feature::{anonymous}::SFeatRangeInfo*, std::vector<ncbi::objects::feature::{anonymous}::SFeatRangeInfo> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ncbi::objects::feature::{anonymous}::SFeatRangeInfo; _Alloc = std::allocator<ncbi::objects::feature::{anonymous}::SFeatRangeInfo>]’,
inlined from ‘bool ncbi::objects::feature::{anonymous}::s_AddCircularRanges(std::vector<SFeatRangeInfo>&, SFeatRangeInfo&, bool)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/util/feature.cpp:1806:21,
inlined from ‘ncbi::objects::feature::{anonymous}::TRangeArray& ncbi::objects::feature::{anonymous}::CFeatTreeParentTypeIndex::GetIndex(ncbi::objects::feature::{anonymous}::TCanonicalIdsMap&, const ncbi::objects::feature::{anonymous}::TInfoArray&)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/util/feature.cpp:1864:46,
inlined from ‘ncbi::objects::feature::{anonymous}::TRangeArray& ncbi::objects::feature::CFeatTreeIndex::GetIndex(ncbi::objects::CSeqFeatData::ESubtype, bool, const ncbi::objects::feature::{anonymous}::TInfoArray&)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/util/feature.cpp:1904:31:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::feature::{anonymous}::SFeatRangeInfo*, std::vector<ncbi::objects::feature::{anonymous}::SFeatRangeInfo> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ncbi::objects::feature::{anonymous}::SFeatRangeInfo; _Alloc = std::allocator<ncbi::objects::feature::{anonymous}::SFeatRangeInfo>]’,
inlined from ‘ncbi::objects::feature::{anonymous}::TRangeArray& ncbi::objects::feature::{anonymous}::CFeatTreeParentTypeIndex::GetIndex(ncbi::objects::feature::{anonymous}::TCanonicalIdsMap&, const ncbi::objects::feature::{anonymous}::TInfoArray&)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/util/feature.cpp:1865:42,
inlined from ‘ncbi::objects::feature::{anonymous}::TRangeArray& ncbi::objects::feature::CFeatTreeIndex::GetIndex(ncbi::objects::CSeqFeatData::ESubtype, bool, const ncbi::objects::feature::{anonymous}::TInfoArray&)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/util/feature.cpp:1904:31:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::feature::{anonymous}::SFeatRangeInfo*, std::vector<ncbi::objects::feature::{anonymous}::SFeatRangeInfo> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::objects::feature::{anonymous}::SFeatRangeInfo*, vector<ncbi::objects::feature::{anonymous}::SFeatRangeInfo> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<ncbi::objects::feature::{anonymous}::PLessByEnd>]’,
inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ncbi::objects::feature::{anonymous}::SFeatRangeInfo*, vector<ncbi::objects::feature::{anonymous}::SFeatRangeInfo> >; _Compare = ncbi::objects::feature::{anonymous}::PLessByEnd]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18,
inlined from ‘ncbi::objects::feature::{anonymous}::TRangeArray& ncbi::objects::feature::{anonymous}::CFeatTreeParentTypeIndex::GetIndex(ncbi::objects::feature::{anonymous}::TCanonicalIdsMap&, const ncbi::objects::feature::{anonymous}::TInfoArray&)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/util/feature.cpp:1876:17,
inlined from ‘ncbi::objects::feature::{anonymous}::TRangeArray& ncbi::objects::feature::CFeatTreeIndex::GetIndex(ncbi::objects::CSeqFeatData::ESubtype, bool, const ncbi::objects::feature::{anonymous}::TInfoArray&)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/util/feature.cpp:1904:31:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::feature::{anonymous}::SFeatRangeInfo*, std::vector<ncbi::objects::feature::{anonymous}::SFeatRangeInfo> >’ changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::objects::feature::{anonymous}::SFeatRangeInfo*, vector<ncbi::objects::feature::{anonymous}::SFeatRangeInfo> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<ncbi::objects::feature::{anonymous}::PLessByEnd>]’,
inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::objects::feature::{anonymous}::SFeatRangeInfo*, vector<ncbi::objects::feature::{anonymous}::SFeatRangeInfo> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<ncbi::objects::feature::{anonymous}::PLessByEnd>]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31,
inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ncbi::objects::feature::{anonymous}::SFeatRangeInfo*, vector<ncbi::objects::feature::{anonymous}::SFeatRangeInfo> >; _Compare = ncbi::objects::feature::{anonymous}::PLessByEnd]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18,
inlined from ‘ncbi::objects::feature::{anonymous}::TRangeArray& ncbi::objects::feature::{anonymous}::CFeatTreeParentTypeIndex::GetIndex(ncbi::objects::feature::{anonymous}::TCanonicalIdsMap&, const ncbi::objects::feature::{anonymous}::TInfoArray&)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/util/feature.cpp:1876:17,
inlined from ‘ncbi::objects::feature::{anonymous}::TRangeArray& ncbi::objects::feature::CFeatTreeIndex::GetIndex(ncbi::objects::CSeqFeatData::ESubtype, bool, const ncbi::objects::feature::{anonymous}::TInfoArray&)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/util/feature.cpp:1904:31:
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::feature::{anonymous}::SFeatRangeInfo*, std::vector<ncbi::objects::feature::{anonymous}::SFeatRangeInfo> >’ changed in GCC 7.1
1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::feature::{anonymous}::SFeatRangeInfo*, std::vector<ncbi::objects::feature::{anonymous}::SFeatRangeInfo> >’ changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ncbi::objects::feature::{anonymous}::SFeatRangeInfo; _Alloc = std::allocator<ncbi::objects::feature::{anonymous}::SFeatRangeInfo>]’,
inlined from ‘bool ncbi::objects::feature::{anonymous}::s_AddCircularRanges(std::vector<SFeatRangeInfo>&, SFeatRangeInfo&, bool)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/util/feature.cpp:1803:21,
inlined from ‘void ncbi::objects::feature::s_CollectBestOverlaps.constprop(CFeatTree::TFeatArray&, {anonymous}::TBestArray&, const STypeLink&, {anonymous}::TRangeArray&, CFeatTree*, {anonymous}::TCanonicalIdsMap&)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/util/feature.cpp:2523:38:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::feature::{anonymous}::SFeatRangeInfo*, std::vector<ncbi::objects::feature::{anonymous}::SFeatRangeInfo> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ncbi::objects::feature::{anonymous}::SFeatRangeInfo; _Alloc = std::allocator<ncbi::objects::feature::{anonymous}::SFeatRangeInfo>]’,
inlined from ‘bool ncbi::objects::feature::{anonymous}::s_AddCircularRanges(std::vector<SFeatRangeInfo>&, SFeatRangeInfo&, bool)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/util/feature.cpp:1806:21,
inlined from ‘void ncbi::objects::feature::s_CollectBestOverlaps.constprop(CFeatTree::TFeatArray&, {anonymous}::TBestArray&, const STypeLink&, {anonymous}::TRangeArray&, CFeatTree*, {anonymous}::TCanonicalIdsMap&)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/util/feature.cpp:2523:38:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::feature::{anonymous}::SFeatRangeInfo*, std::vector<ncbi::objects::feature::{anonymous}::SFeatRangeInfo> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ncbi::objects::feature::{anonymous}::SFeatRangeInfo; _Alloc = std::allocator<ncbi::objects::feature::{anonymous}::SFeatRangeInfo>]’,
inlined from ‘void ncbi::objects::feature::s_CollectBestOverlaps.constprop(CFeatTree::TFeatArray&, {anonymous}::TBestArray&, const STypeLink&, {anonymous}::TRangeArray&, CFeatTree*, {anonymous}::TCanonicalIdsMap&)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/util/feature.cpp:2524:29:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::feature::{anonymous}::SFeatRangeInfo*, std::vector<ncbi::objects::feature::{anonymous}::SFeatRangeInfo> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::objects::feature::{anonymous}::SFeatRangeInfo*, vector<ncbi::objects::feature::{anonymous}::SFeatRangeInfo> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<ncbi::objects::feature::{anonymous}::PLessByStart>]’,
inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ncbi::objects::feature::{anonymous}::SFeatRangeInfo*, vector<ncbi::objects::feature::{anonymous}::SFeatRangeInfo> >; _Compare = ncbi::objects::feature::{anonymous}::PLessByStart]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18,
inlined from ‘void ncbi::objects::feature::s_CollectBestOverlaps.constprop(CFeatTree::TFeatArray&, {anonymous}::TBestArray&, const STypeLink&, {anonymous}::TRangeArray&, CFeatTree*, {anonymous}::TCanonicalIdsMap&)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/util/feature.cpp:2531:9:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::feature::{anonymous}::SFeatRangeInfo*, std::vector<ncbi::objects::feature::{anonymous}::SFeatRangeInfo> >’ changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::objects::feature::{anonymous}::SFeatRangeInfo*, vector<ncbi::objects::feature::{anonymous}::SFeatRangeInfo> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<ncbi::objects::feature::{anonymous}::PLessByStart>]’,
inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::objects::feature::{anonymous}::SFeatRangeInfo*, vector<ncbi::objects::feature::{anonymous}::SFeatRangeInfo> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<ncbi::objects::feature::{anonymous}::PLessByStart>]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31,
inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ncbi::objects::feature::{anonymous}::SFeatRangeInfo*, vector<ncbi::objects::feature::{anonymous}::SFeatRangeInfo> >; _Compare = ncbi::objects::feature::{anonymous}::PLessByStart]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18,
inlined from ‘void ncbi::objects::feature::s_CollectBestOverlaps.constprop(CFeatTree::TFeatArray&, {anonymous}::TBestArray&, const STypeLink&, {anonymous}::TRangeArray&, CFeatTree*, {anonymous}::TCanonicalIdsMap&)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/util/feature.cpp:2531:9:
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::feature::{anonymous}::SFeatRangeInfo*, std::vector<ncbi::objects::feature::{anonymous}::SFeatRangeInfo> >’ changed in GCC 7.1
1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::feature::{anonymous}::SFeatRangeInfo*, std::vector<ncbi::objects::feature::{anonymous}::SFeatRangeInfo> >’ changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_loadlock.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/writer.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/cache/writer_cache.hpp:33,
from /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:31:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/writer.hpp:34:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_loadlock.hpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_loadlock.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/reader.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/cache/reader_cache.hpp:33,
from /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:31:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/reader.hpp:32:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_loadlock.hpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
103 | auto_ptr<TIndices> m_Indices;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
154 | auto_ptr<TIndices> m_Indices;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /usr/include/c++/12/algorithm:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:180:
/usr/include/c++/12/bits/stl_algo.h: In function ‘_RandomAccessIterator std::_V2::__rotate(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, std::random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, std::vector<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >]’:
/usr/include/c++/12/bits/stl_algo.h:1281:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, std::vector<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >’ changed in GCC 7.1
1281 | __rotate(_RandomAccessIterator __first,
| ^~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1281:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, std::vector<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1281:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, std::vector<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >’ changed in GCC 7.1
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_loadlock.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/reader.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/reader_id1_base.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/id1/reader_id1.hpp:33,
from /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiargs.hpp:84,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp_api.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_param.hpp:41,
from /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp:32:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_loadlock.hpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
103 | auto_ptr<TIndices> m_Indices;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
154 | auto_ptr<TIndices> m_Indices;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_loadlock.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/reader.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33,
from /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiargs.hpp:84,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp_api.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_param.hpp:41,
from /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:32:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp: In member function ‘virtual void ncbi::objects::CCacheWriter::InitializeCache(ncbi::objects::CReaderCacheManager&, const ncbi::TPluginManagerParamTree*)’:
/<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:66:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
66 | auto_ptr<TParams> id_params
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:68:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
68 | auto_ptr<TParams> blob_params
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp: In member function ‘void ncbi::objects::CCacheWriter::WriteSeq_ids(const std::string&, const ncbi::objects::CLoadLockSeqIds&)’:
/<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:336:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
336 | auto_ptr<IWriter> writer
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp: At global scope:
/<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:532:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
532 | auto_ptr<IWriter> m_Writer;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:533:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
533 | auto_ptr<CWStream> m_Stream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_loadlock.hpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
103 | auto_ptr<TIndices> m_Indices;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
154 | auto_ptr<TIndices> m_Indices;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:40:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
103 | auto_ptr<TIndices> m_Indices;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
154 | auto_ptr<TIndices> m_Indices;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp: In function ‘ncbi::objects::SCacheInfo::TParams* ncbi::objects::GetCacheParams(const SCacheInfo::TParams*, SCacheInfo::EReaderOrWriter, SCacheInfo::EIdOrBlob)’:
/<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:1647:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1647 | auto_ptr<SCacheInfo::TParams> section
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp: In static member function ‘static ncbi::ICache* ncbi::objects::SCacheInfo::CreateCache(const TParams*, EReaderOrWriter, EIdOrBlob)’:
/<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:1676:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1676 | auto_ptr<TParams> cache_params
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp: In member function ‘virtual void ncbi::objects::CCacheReader::InitializeCache(ncbi::objects::CReaderCacheManager&, const ncbi::TPluginManagerParamTree*)’:
/<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:1696:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1696 | auto_ptr<TParams> id_params
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:1698:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1698 | auto_ptr<TParams> blob_params
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /usr/include/c++/12/bits/stl_algo.h:61:
/usr/include/c++/12/bits/stl_tempbuf.h: In constructor ‘std::_Temporary_buffer<_ForwardIterator, _Tp>::_Temporary_buffer(_ForwardIterator, size_type) [with _ForwardIterator = __gnu_cxx::__normal_iterator<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, std::vector<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >; _Tp = std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >]’:
/usr/include/c++/12/bits/stl_tempbuf.h:258:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, std::vector<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >’ changed in GCC 7.1
258 | _Temporary_buffer<_ForwardIterator, _Tp>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, vector<pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<ncbi::objects::sequence::COverlapPairLess>]’:
/usr/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, std::vector<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >’ changed in GCC 7.1
1782 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, vector<pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<ncbi::objects::sequence::COverlapPairLess>]’:
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, std::vector<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >’ changed in GCC 7.1
1802 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, std::vector<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >’ changed in GCC 7.1
In file included from /usr/include/c++/12/algorithm:60:
/usr/include/c++/12/bits/stl_algobase.h: In function ‘_ForwardIterator std::__lower_bound(_ForwardIterator, _ForwardIterator, const _Tp&, _Compare) [with _ForwardIterator = __gnu_cxx::__normal_iterator<pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, vector<pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >; _Tp = pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >; _Compare = __gnu_cxx::__ops::_Iter_comp_val<ncbi::objects::sequence::COverlapPairLess>]’:
/usr/include/c++/12/bits/stl_algobase.h:1450:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, std::vector<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >’ changed in GCC 7.1
1450 | __lower_bound(_ForwardIterator __first, _ForwardIterator __last,
| ^~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algobase.h:1450:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, std::vector<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h: In function ‘_ForwardIterator std::__upper_bound(_ForwardIterator, _ForwardIterator, const _Tp&, _Compare) [with _ForwardIterator = __gnu_cxx::__normal_iterator<pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, vector<pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >; _Tp = pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<ncbi::objects::sequence::COverlapPairLess>]’:
/usr/include/c++/12/bits/stl_algo.h:2011:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, std::vector<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >’ changed in GCC 7.1
2011 | __upper_bound(_ForwardIterator __first, _ForwardIterator __last,
| ^~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:2011:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, std::vector<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__merge_without_buffer(_BidirectionalIterator, _BidirectionalIterator, _BidirectionalIterator, _Distance, _Distance, _Compare) [with _BidirectionalIterator = __gnu_cxx::__normal_iterator<pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, vector<pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >; _Distance = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<ncbi::objects::sequence::COverlapPairLess>]’:
/usr/include/c++/12/bits/stl_algo.h:2451:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, std::vector<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >’ changed in GCC 7.1
2451 | __merge_without_buffer(_BidirectionalIterator __first,
| ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:2451:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, std::vector<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:2451:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, std::vector<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:2476:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, std::vector<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >’ changed in GCC 7.1
2476 | = std::__lower_bound(__middle, __last, *__first_cut,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2477 | __gnu_cxx::__ops::__iter_comp_val(__comp));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:2485:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, std::vector<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >’ changed in GCC 7.1
2485 | = std::__upper_bound(__first, __middle, *__second_cut,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2486 | __gnu_cxx::__ops::__val_comp_iter(__comp));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘_FIter std::_V2::rotate(_FIter, _FIter, _FIter) [with _FIter = __gnu_cxx::__normal_iterator<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, std::vector<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >]’,
inlined from ‘void std::__merge_without_buffer(_BidirectionalIterator, _BidirectionalIterator, _BidirectionalIterator, _Distance, _Distance, _Compare) [with _BidirectionalIterator = __gnu_cxx::__normal_iterator<pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, vector<pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >; _Distance = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<ncbi::objects::sequence::COverlapPairLess>]’ at /usr/include/c++/12/bits/stl_algo.h:2491:15:
/usr/include/c++/12/bits/stl_algo.h:1397:27: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, std::vector<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >’ changed in GCC 7.1
1397 | return std::__rotate(__first, __middle, __last,
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
1398 | std::__iterator_category(__first));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__merge_without_buffer(_BidirectionalIterator, _BidirectionalIterator, _BidirectionalIterator, _Distance, _Distance, _Compare) [with _BidirectionalIterator = __gnu_cxx::__normal_iterator<pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, vector<pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >; _Distance = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<ncbi::objects::sequence::COverlapPairLess>]’:
/usr/include/c++/12/bits/stl_algo.h:2492:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, std::vector<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >’ changed in GCC 7.1
2492 | std::__merge_without_buffer(__first, __first_cut, __new_middle,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2493 | __len11, __len22, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:2494:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, std::vector<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >’ changed in GCC 7.1
2494 | std::__merge_without_buffer(__new_middle, __second_cut, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2495 | __len1 - __len11, __len2 - __len22, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, vector<pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<ncbi::objects::sequence::COverlapPairLess>]’:
/usr/include/c++/12/bits/stl_algo.h:2739:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, std::vector<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >’ changed in GCC 7.1
2739 | __inplace_stable_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:2739:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, std::vector<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:2744:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, std::vector<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >’ changed in GCC 7.1
2744 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:2748:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, std::vector<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >’ changed in GCC 7.1
2748 | std::__inplace_stable_sort(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:2749:33: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, std::vector<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >’ changed in GCC 7.1
2749 | std::__inplace_stable_sort(__middle, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:2750:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, std::vector<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >’ changed in GCC 7.1
2750 | std::__merge_without_buffer(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2751 | __middle - __first,
| ~~~~~~~~~~~~~~~~~~~
2752 | __last - __middle,
| ~~~~~~~~~~~~~~~~~~
2753 | __comp);
| ~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__merge_adaptive(_BidirectionalIterator, _BidirectionalIterator, _BidirectionalIterator, _Distance, _Distance, _Pointer, _Distance, _Compare) [with _BidirectionalIterator = __gnu_cxx::__normal_iterator<pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, vector<pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >; _Distance = int; _Pointer = pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<ncbi::objects::sequence::COverlapPairLess>]’:
/usr/include/c++/12/bits/stl_algo.h:2390:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, std::vector<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >’ changed in GCC 7.1
2390 | __merge_adaptive(_BidirectionalIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:2390:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, std::vector<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:2390:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, std::vector<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:2420:37: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, std::vector<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >’ changed in GCC 7.1
2420 | = std::__lower_bound(__middle, __last, *__first_cut,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2421 | __gnu_cxx::__ops::__iter_comp_val(__comp));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:2429:37: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, std::vector<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >’ changed in GCC 7.1
2429 | = std::__upper_bound(__first, __middle, *__second_cut,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2430 | __gnu_cxx::__ops::__val_comp_iter(__comp));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘_FIter std::_V2::rotate(_FIter, _FIter, _FIter) [with _FIter = __gnu_cxx::__normal_iterator<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, std::vector<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >]’,
inlined from ‘_BidirectionalIterator1 std::__rotate_adaptive(_BidirectionalIterator1, _BidirectionalIterator1, _BidirectionalIterator1, _Distance, _Distance, _BidirectionalIterator2, _Distance) [with _BidirectionalIterator1 = __gnu_cxx::__normal_iterator<pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, vector<pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >; _BidirectionalIterator2 = pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*; _Distance = int]’ at /usr/include/c++/12/bits/stl_algo.h:2383:20,
inlined from ‘void std::__merge_adaptive(_BidirectionalIterator, _BidirectionalIterator, _BidirectionalIterator, _Distance, _Distance, _Pointer, _Distance, _Compare) [with _BidirectionalIterator = __gnu_cxx::__normal_iterator<pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, vector<pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >; _Distance = int; _Pointer = pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<ncbi::objects::sequence::COverlapPairLess>]’ at /usr/include/c++/12/bits/stl_algo.h:2435:30:
/usr/include/c++/12/bits/stl_algo.h:1397:27: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, std::vector<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >’ changed in GCC 7.1
1397 | return std::__rotate(__first, __middle, __last,
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
1398 | std::__iterator_category(__first));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__merge_adaptive(_BidirectionalIterator, _BidirectionalIterator, _BidirectionalIterator, _Distance, _Distance, _Pointer, _Distance, _Compare) [with _BidirectionalIterator = __gnu_cxx::__normal_iterator<pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, vector<pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >; _Distance = int; _Pointer = pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<ncbi::objects::sequence::COverlapPairLess>]’:
/usr/include/c++/12/bits/stl_algo.h:2438:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, std::vector<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >’ changed in GCC 7.1
2438 | std::__merge_adaptive(__first, __first_cut, __new_middle, __len11,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2439 | __len22, __buffer, __buffer_size, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:2440:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, std::vector<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >’ changed in GCC 7.1
2440 | std::__merge_adaptive(__new_middle, __second_cut, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2441 | __len1 - __len11,
| ~~~~~~~~~~~~~~~~~
2442 | __len2 - __len22, __buffer,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~
2443 | __buffer_size, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘_OutputIterator std::__move_merge(_InputIterator, _InputIterator, _InputIterator, _InputIterator, _OutputIterator, _Compare) [with _InputIterator = __gnu_cxx::__normal_iterator<pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, vector<pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >; _OutputIterator = pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<ncbi::objects::sequence::COverlapPairLess>]’:
/usr/include/c++/12/bits/stl_algo.h:2615:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, std::vector<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >’ changed in GCC 7.1
2615 | __move_merge(_InputIterator __first1, _InputIterator __last1,
| ^~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:2615:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, std::vector<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:2615:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, std::vector<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:2615:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, std::vector<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h: In function ‘_OutputIterator std::__move_merge(_InputIterator, _InputIterator, _InputIterator, _InputIterator, _OutputIterator, _Compare) [with _InputIterator = pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*; _OutputIterator = __gnu_cxx::__normal_iterator<pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, vector<pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<ncbi::objects::sequence::COverlapPairLess>]’:
/usr/include/c++/12/bits/stl_algo.h:2615:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, std::vector<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__merge_sort_with_buffer(_RandomAccessIterator, _RandomAccessIterator, _Pointer, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, vector<pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >; _Pointer = pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<ncbi::objects::sequence::COverlapPairLess>]’:
/usr/include/c++/12/bits/stl_algo.h:2682:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, std::vector<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >’ changed in GCC 7.1
2682 | __merge_sort_with_buffer(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:2682:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, std::vector<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >’ changed in GCC 7.1
In function ‘void std::__chunk_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Distance, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, vector<pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >; _Distance = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<ncbi::objects::sequence::COverlapPairLess>]’,
inlined from ‘void std::__merge_sort_with_buffer(_RandomAccessIterator, _RandomAccessIterator, _Pointer, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, vector<pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >; _Pointer = pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<ncbi::objects::sequence::COverlapPairLess>]’ at /usr/include/c++/12/bits/stl_algo.h:2693:34:
/usr/include/c++/12/bits/stl_algo.h:2672:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, std::vector<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >’ changed in GCC 7.1
2672 | std::__insertion_sort(__first, __first + __chunk_size, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:2675:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, std::vector<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >’ changed in GCC 7.1
2675 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:2675:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, std::vector<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >’ changed in GCC 7.1
In function ‘void std::__merge_sort_loop(_RandomAccessIterator1, _RandomAccessIterator1, _RandomAccessIterator2, _Distance, _Compare) [with _RandomAccessIterator1 = __gnu_cxx::__normal_iterator<pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, vector<pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >; _RandomAccessIterator2 = pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*; _Distance = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<ncbi::objects::sequence::COverlapPairLess>]’,
inlined from ‘void std::__merge_sort_with_buffer(_RandomAccessIterator, _RandomAccessIterator, _Pointer, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, vector<pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >; _Pointer = pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<ncbi::objects::sequence::COverlapPairLess>]’ at /usr/include/c++/12/bits/stl_algo.h:2697:26:
/usr/include/c++/12/bits/stl_algo.h:2650:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, std::vector<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >’ changed in GCC 7.1
2650 | __result = std::__move_merge(__first, __first + __step_size,
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2651 | __first + __step_size,
| ~~~~~~~~~~~~~~~~~~~~~~
2652 | __first + __two_step,
| ~~~~~~~~~~~~~~~~~~~~~
2653 | __result, __comp);
| ~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:2650:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, std::vector<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:2658:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, std::vector<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >’ changed in GCC 7.1
2658 | std::__move_merge(__first, __first + __step_size,
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2659 | __first + __step_size, __last, __result, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:2658:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, std::vector<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >’ changed in GCC 7.1
In function ‘void std::__merge_sort_loop(_RandomAccessIterator1, _RandomAccessIterator1, _RandomAccessIterator2, _Distance, _Compare) [with _RandomAccessIterator1 = pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*; _RandomAccessIterator2 = __gnu_cxx::__normal_iterator<pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, vector<pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >; _Distance = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<ncbi::objects::sequence::COverlapPairLess>]’,
inlined from ‘void std::__merge_sort_with_buffer(_RandomAccessIterator, _RandomAccessIterator, _Pointer, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, vector<pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >; _Pointer = pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<ncbi::objects::sequence::COverlapPairLess>]’ at /usr/include/c++/12/bits/stl_algo.h:2700:26:
/usr/include/c++/12/bits/stl_algo.h:2650:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, std::vector<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >’ changed in GCC 7.1
2650 | __result = std::__move_merge(__first, __first + __step_size,
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2651 | __first + __step_size,
| ~~~~~~~~~~~~~~~~~~~~~~
2652 | __first + __two_step,
| ~~~~~~~~~~~~~~~~~~~~~
2653 | __result, __comp);
| ~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:2658:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, std::vector<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >’ changed in GCC 7.1
2658 | std::__move_merge(__first, __first + __step_size,
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2659 | __first + __step_size, __last, __result, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__stable_sort_adaptive(_RandomAccessIterator, _RandomAccessIterator, _Pointer, _Distance, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, vector<pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >; _Pointer = pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*; _Distance = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<ncbi::objects::sequence::COverlapPairLess>]’:
/usr/include/c++/12/bits/stl_algo.h:2709:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, std::vector<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >’ changed in GCC 7.1
2709 | __stable_sort_adaptive(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:2709:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, std::vector<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:2718:38: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, std::vector<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >’ changed in GCC 7.1
2718 | std::__stable_sort_adaptive(__first, __middle, __buffer,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2719 | __buffer_size, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:2720:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, std::vector<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >’ changed in GCC 7.1
2720 | std::__stable_sort_adaptive(__middle, __last, __buffer,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
2721 | __buffer_size, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:2725:40: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, std::vector<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >’ changed in GCC 7.1
2725 | std::__merge_sort_with_buffer(__first, __middle, __buffer, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:2726:40: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, std::vector<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >’ changed in GCC 7.1
2726 | std::__merge_sort_with_buffer(__middle, __last, __buffer, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:2729:28: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, std::vector<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >’ changed in GCC 7.1
2729 | std::__merge_adaptive(__first, __middle, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2730 | _Distance(__middle - __first),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2731 | _Distance(__last - __middle),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2732 | __buffer, __buffer_size,
| ~~~~~~~~~~~~~~~~~~~~~~~~
2733 | __comp);
| ~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat, ncbi::CObjectCounterLocker> >&}; _Tp = std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >; _Alloc = std::allocator<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > >]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > >::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >; _Alloc = std::allocator<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > >]’,
inlined from ‘void ncbi::objects::sequence::GetOverlappingFeatures(const ncbi::objects::CSeq_loc&, ncbi::objects::CSeqFeatData_Base::E_Choice, ncbi::objects::CSeqFeatData::ESubtype, EOverlapType, TFeatScores&, ncbi::objects::CScope&, TBestFeatOpts, CGetOverlappingFeaturesPlugin*)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/util/sequence.cpp:1080:32:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, std::vector<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In function ‘void std::__stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, vector<pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<ncbi::objects::sequence::COverlapPairLess>]’,
inlined from ‘void std::stable_sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, vector<pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >; _Compare = ncbi::objects::sequence::COverlapPairLess]’ at /usr/include/c++/12/bits/stl_algo.h:5070:36,
inlined from ‘void ncbi::objects::sequence::GetOverlappingFeatures(const ncbi::objects::CSeq_loc&, ncbi::objects::CSeqFeatData_Base::E_Choice, ncbi::objects::CSeqFeatData::ESubtype, EOverlapType, TFeatScores&, ncbi::objects::CScope&, TBestFeatOpts, CGetOverlappingFeaturesPlugin*)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/util/sequence.cpp:1092:21:
/usr/include/c++/12/bits/stl_algo.h:4996:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, std::vector<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >’ changed in GCC 7.1
4996 | _TmpBuf __buf(__first, (__last - __first + 1) / 2);
| ^~~~~
/usr/include/c++/12/bits/stl_algo.h:4999:35: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, std::vector<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >’ changed in GCC 7.1
4999 | std::__inplace_stable_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:5001:36: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, std::vector<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >’ changed in GCC 7.1
5001 | std::__stable_sort_adaptive(__first, __last, __buf.begin(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
5002 | _DistanceType(__buf.size()), __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const ncbi::objects::CSeq_id_Handle&}; _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator<ncbi::objects::CSeq_id_Handle>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<ncbi::objects::CSeq_id_Handle>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {ncbi::objects::CSeq_id_Handle}; _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator<ncbi::objects::CSeq_id_Handle>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<ncbi::objects::CSeq_id_Handle>::iterator’ changed in GCC 7.1
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {ncbi::objects::CSeq_id_Handle}; _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator<ncbi::objects::CSeq_id_Handle>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<ncbi::objects::CSeq_id_Handle>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ncbi::objects::CSeq_id_Handle}; _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator<ncbi::objects::CSeq_id_Handle>]’:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ncbi::objects::CSeq_id_Handle}; _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator<ncbi::objects::CSeq_id_Handle>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator<ncbi::objects::CSeq_id_Handle>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘ncbi::objects::CSeq_id_Handle ncbi::objects::sequence::GetId(const ncbi::objects::CBioseq_Base::TId&, EGetIdType)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/util/sequence.cpp:434:22:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {ncbi::objects::CSeq_id_Handle}; _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator<ncbi::objects::CSeq_id_Handle>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<ncbi::objects::CSeq_id_Handle>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ncbi::objects::CSeq_id_Handle}; _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator<ncbi::objects::CSeq_id_Handle>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator<ncbi::objects::CSeq_id_Handle>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘bool ncbi::objects::CId1Reader::LoadGiSeq_ids(ncbi::objects::CReaderRequestResult&, const ncbi::objects::CSeq_id_Handle&)’ at /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp:376:26:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator<ncbi::objects::CSeq_id_Handle>]’,
inlined from ‘virtual bool ncbi::objects::CId1Reader::LoadSeq_idSeq_ids(ncbi::objects::CReaderRequestResult&, const ncbi::objects::CSeq_id_Handle&)’ at /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp:311:30:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank/id2'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp -o reader_id2.o
/bin/rm -f libncbi_xreader_id2.a .libncbi_xreader_id2.a.stamp
/bin/rm -f libncbi_xreader_id2.so .libncbi_xreader_id2.so.stamp
ar cr libncbi_xreader_id2.a reader_id2.o
/usr/bin/g++ -std=gnu++14 -shared -o libncbi_xreader_id2.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC reader_id2.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lncbi_xreader -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lsubmit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lxncbi -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2.a /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libncbi_xreader_id2.a /<<PKGBUILDDIR>>/c++/BUILD/lib/libncbi_xreader_id2.a
/bin/ln -f .ncbi_xreader_id2-static.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.ncbi_xreader_id2-static.dep
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libncbi_xreader_id2.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libncbi_xreader_id2.so
/bin/ln -f .ncbi_xreader_id2.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.ncbi_xreader_id2.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank/id2'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank/id2'
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ncbi::objects::CSeq_id_Handle}; _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator<ncbi::objects::CSeq_id_Handle>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator<ncbi::objects::CSeq_id_Handle>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘bool ncbi::objects::CCacheReader::ReadSeq_ids(ncbi::objects::CReaderRequestResult&, const std::string&, ncbi::objects::CLoadLockSeqIds&)’ at /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:666:26:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank/id1'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp -o reader_id1.o
/bin/rm -f libncbi_xreader_id1.a .libncbi_xreader_id1.a.stamp
/bin/rm -f libncbi_xreader_id1.so .libncbi_xreader_id1.so.stamp
ar cr libncbi_xreader_id1.a reader_id1.o
/usr/bin/g++ -std=gnu++14 -shared -o libncbi_xreader_id1.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC reader_id1.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lncbi_xreader -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lsubmit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lxncbi -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1.a /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libncbi_xreader_id1.a /<<PKGBUILDDIR>>/c++/BUILD/lib/libncbi_xreader_id1.a
/bin/ln -f .ncbi_xreader_id1-static.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.ncbi_xreader_id1-static.dep
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libncbi_xreader_id1.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libncbi_xreader_id1.so
/bin/ln -f .ncbi_xreader_id1.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.ncbi_xreader_id1.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank/id1'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank/id1'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank/cache'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp -o reader_cache.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp -o writer_cache.o
/bin/rm -f libncbi_xreader_cache.a .libncbi_xreader_cache.a.stamp
/bin/rm -f libncbi_xreader_cache.so .libncbi_xreader_cache.so.stamp
ar cr libncbi_xreader_cache.a reader_cache.o writer_cache.o
/usr/bin/g++ -std=gnu++14 -shared -o libncbi_xreader_cache.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC reader_cache.o writer_cache.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lncbi_xreader -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lsubmit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lxncbi -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache.a /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libncbi_xreader_cache.a /<<PKGBUILDDIR>>/c++/BUILD/lib/libncbi_xreader_cache.a
/bin/ln -f .ncbi_xreader_cache-static.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.ncbi_xreader_cache-static.dep
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libncbi_xreader_cache.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libncbi_xreader_cache.so
/bin/ln -f .ncbi_xreader_cache.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.ncbi_xreader_cache.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank/cache'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank/cache'
cd objtools/data_loaders/genbank/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=ncbi_xloader_genbank UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xloader_genbank -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/gbnative.cpp:64:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/gbloader.cpp:66:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/gbloader.hpp:48,
from /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/gbload_util.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/gbload_util.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/gbload_util.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/gbnative.hpp:48,
from /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/gbnative.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiargs.hpp:84,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp_api.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_param.hpp:41,
from /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/gbnative.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/gbloader.hpp:48,
from /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/gbloader.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiargs.hpp:84,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp_api.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_param.hpp:41,
from /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/gbloader.cpp:34:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_loadlock.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/reader.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/gbnative.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/psg_loader.cpp:41:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/psg_loader.cpp:34:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_loadlock.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/reader.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/gbloader.cpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
103 | auto_ptr<TIndices> m_Indices;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
154 | auto_ptr<TIndices> m_Indices;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/gbnative.cpp: In member function ‘void ncbi::objects::CGBDataLoader_Native::x_CreateDriver(const ncbi::objects::CGBLoaderParams&)’:
/<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/gbnative.cpp:291:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
291 | auto_ptr<TParamTree> app_params;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
103 | auto_ptr<TIndices> m_Indices;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
154 | auto_ptr<TIndices> m_Indices;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/psg_loader_impl.cpp:42:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/psg_loader_impl.cpp:34:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/data_source.hpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /usr/include/c++/12/bits/stl_algo.h:60,
from /usr/include/c++/12/algorithm:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:180:
/usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _Distance = int; _Tp = ncbi::objects::CSeq_id_Handle; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<ncbi::objects::{anonymous}::SBetterId>]’:
/usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<ncbi::objects::{anonymous}::SBetterId>]’:
/usr/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
1782 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<ncbi::objects::{anonymous}::SBetterId>]’:
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
1802 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<ncbi::objects::{anonymous}::SBetterId>]’:
/usr/include/c++/12/bits/stl_algo.h:1844:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
1844 | __final_insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1844:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/memory:66,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_stack.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/usr/include/c++/12/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _ForwardIterator = ncbi::objects::CSeq_id_Handle*]’:
/usr/include/c++/12/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
113 | __do_uninit_copy(_InputIterator __first, _InputIterator __last,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >; _ForwardIterator = ncbi::objects::CSeq_id_Handle*; bool _TrivialValueTypes = false]’,
inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _ForwardIterator = ncbi::objects::CSeq_id_Handle*]’ at /usr/include/c++/12/bits/stl_uninitialized.h:185:15,
inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _ForwardIterator = ncbi::objects::CSeq_id_Handle*; _Tp = ncbi::objects::CSeq_id_Handle]’ at /usr/include/c++/12/bits/stl_uninitialized.h:372:37,
inlined from ‘std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >; _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator<ncbi::objects::CSeq_id_Handle>]’ at /usr/include/c++/12/bits/stl_vector.h:1617:35,
inlined from ‘std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator<ncbi::objects::CSeq_id_Handle>]’ at /usr/include/c++/12/bits/vector.tcc:232:44,
inlined from ‘virtual void ncbi::objects::CGBDataLoader_Native::GetIds(const ncbi::objects::CSeq_id_Handle&, ncbi::objects::CDataLoader::TIds&)’ at /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/gbnative.cpp:661:27:
/usr/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
137 | { return std::__do_uninit_copy(__first, __last, __result); }
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<ncbi::objects::{anonymous}::SBetterId>]’:
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
1908 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >; _ForwardIterator = ncbi::objects::CSeq_id_Handle*; bool _TrivialValueTypes = false]’,
inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _ForwardIterator = ncbi::objects::CSeq_id_Handle*]’ at /usr/include/c++/12/bits/stl_uninitialized.h:185:15,
inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _ForwardIterator = ncbi::objects::CSeq_id_Handle*; _Tp = ncbi::objects::CSeq_id_Handle]’ at /usr/include/c++/12/bits/stl_uninitialized.h:372:37,
inlined from ‘std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator<ncbi::objects::CSeq_id_Handle>]’ at /usr/include/c++/12/bits/stl_vector.h:601:31,
inlined from ‘virtual ncbi::objects::CDataLoader::TTSE_LockSet ncbi::objects::CGBDataLoader_Native::GetExternalAnnotRecordsNA(const ncbi::objects::CBioseq_Info&, const ncbi::objects::SAnnotSelector*, ncbi::objects::CDataLoader::TProcessedNAs*)’ at /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/gbnative.cpp:1303:29:
/usr/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
137 | { return std::__do_uninit_copy(__first, __last, __result); }
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<ncbi::objects::{anonymous}::SBetterId>]’,
inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _Compare = ncbi::objects::{anonymous}::SBetterId]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18,
inlined from ‘virtual ncbi::objects::CDataLoader::TTSE_LockSet ncbi::objects::CGBDataLoader_Native::GetExternalAnnotRecordsNA(const ncbi::objects::CBioseq_Info&, const ncbi::objects::SAnnotSelector*, ncbi::objects::CDataLoader::TProcessedNAs*)’ at /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/gbnative.cpp:1304:9:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1940:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
1940 | std::__final_insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >; _ForwardIterator = ncbi::objects::CSeq_id_Handle*; bool _TrivialValueTypes = false]’,
inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _ForwardIterator = ncbi::objects::CSeq_id_Handle*]’ at /usr/include/c++/12/bits/stl_uninitialized.h:185:15,
inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _ForwardIterator = ncbi::objects::CSeq_id_Handle*; _Tp = ncbi::objects::CSeq_id_Handle]’ at /usr/include/c++/12/bits/stl_uninitialized.h:372:37,
inlined from ‘std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator<ncbi::objects::CSeq_id_Handle>]’ at /usr/include/c++/12/bits/stl_vector.h:601:31,
inlined from ‘virtual ncbi::objects::CDataLoader::TTSE_LockSet ncbi::objects::CGBDataLoader_Native::GetExternalRecords(const ncbi::objects::CBioseq_Info&)’ at /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/gbnative.cpp:1270:29:
/usr/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
137 | { return std::__do_uninit_copy(__first, __last, __result); }
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<ncbi::objects::{anonymous}::SBetterId>]’,
inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _Compare = ncbi::objects::{anonymous}::SBetterId]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18,
inlined from ‘virtual ncbi::objects::CDataLoader::TTSE_LockSet ncbi::objects::CGBDataLoader_Native::GetExternalRecords(const ncbi::objects::CBioseq_Info&)’ at /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/gbnative.cpp:1271:9:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1940:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
1940 | std::__final_insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const ncbi::objects::CSeq_id_Handle&}; _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator<ncbi::objects::CSeq_id_Handle>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<ncbi::objects::CSeq_id_Handle>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator<ncbi::objects::CSeq_id_Handle>]’,
inlined from ‘virtual void ncbi::objects::CGBDataLoader_Native::GetBlobs(ncbi::objects::CDataLoader::TTSE_LockSets&)’ at /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/gbnative.cpp:1542:22:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/gbloader.cpp -o gbloader.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/gbnative.cpp -o gbnative.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/gbload_util.cpp -o gbload_util.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/psg_loader.cpp -o psg_loader.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/data_loaders/genbank/psg_loader_impl.cpp -o psg_loader_impl.o
/bin/rm -f libncbi_xloader_genbank.a .libncbi_xloader_genbank.a.stamp
/bin/rm -f libncbi_xloader_genbank.so .libncbi_xloader_genbank.so.stamp
ar cr libncbi_xloader_genbank.a gbloader.o gbnative.o gbload_util.o psg_loader.o psg_loader_impl.o
/usr/bin/g++ -std=gnu++14 -shared -o libncbi_xloader_genbank.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC gbloader.o gbnative.o gbload_util.o psg_loader.o psg_loader_impl.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lsubmit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lxncbi -lz -lbz2 -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank.a /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libncbi_xloader_genbank.a /<<PKGBUILDDIR>>/c++/BUILD/lib/libncbi_xloader_genbank.a
/bin/ln -f .ncbi_xloader_genbank-static.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.ncbi_xloader_genbank-static.dep
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libncbi_xloader_genbank.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libncbi_xloader_genbank.so
/bin/ln -f .ncbi_xloader_genbank.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.ncbi_xloader_genbank.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank'
cd objtools/simple/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xobjsimple UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/simple'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/simple'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/simple'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/simple'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/simple'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objtools/simple TMPL=xobjsimple -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >; _Alloc = std::allocator<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > >]’,
inlined from ‘ncbi::CConstRef<ncbi::objects::CSeq_feat> ncbi::objects::sequence::GetBestMrnaForCds(const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, TBestFeatOpts, CGetOverlappingFeaturesPlugin*)’ at /<<PKGBUILDDIR>>/c++/src/objmgr/util/sequence.cpp:1613:49:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> >*, std::vector<std::pair<long long int, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/simple/simple_om.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objtools/simple/simple_om.cpp:33:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/seqloc/Seq_id_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/seqloc/Seq_id.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objects/seq/seq_id_handle.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/simple/simple_om.hpp:35:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/simple/simple_om.hpp:41:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/simple'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/simple/simple_om.cpp -o simple_om.o
/bin/rm -f libxobjsimple.so .libxobjsimple.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libxobjsimple.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC simple_om.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lncbi_xloader_genbank -lxobjmgr -lseq -lxncbi -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjsimple.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libxobjsimple.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libxobjsimple.so
/bin/ln -f .xobjsimple.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.xobjsimple.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/simple'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/simple'
ormat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/util/autodef_feature_clause.cpp -o autodef_feature_clause.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objmgr/util/autodef_options.cpp -o autodef_options.o
/bin/rm -f libxobjutil.so .libxobjutil.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libxobjutil.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC weight.o sequence.o feature.o indexer.o seqtitle.o create_defline.o obj_sniff.o seq_loc_util.o seq_align_util.o seq_trimmer.o bioseqgaps_ci.o objutil.o feature_edit.o autodef.o autodef_feature_clause_base.o autodef_source_desc.o autodef_available_modifier.o autodef_mod_combo.o autodef_source_group.o autodef_feature_clause.o autodef_options.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lxobjmgr -lseqset -lseq -lpub -lbiblio -lgeneral -lxser -lsequtil -lxutil -lxncbi -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjutil.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libxobjutil.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libxobjutil.so
/bin/ln -f .xobjutil.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.xobjutil.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objmgr/util'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objmgr/util'
cd objtools/seqmasks_io/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=seqmasks_io UNIX_PROJ="" sources= configurables=configurables.null
cd algo/blast/dbindex/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xalgoblastdbindex UNIX_PROJ="" sources= configurables=configurables.null
cd objtools/alnmgr/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=alnmgr UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/seqmasks_io'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/dbindex'
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/alnmgr'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
cd objtools/blast/blastdb_format/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blastdb_format UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/blastdb_format'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/alnmgr'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/dbindex'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/seqmasks_io'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/seqmasks_io'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/seqmasks_io'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/seqmasks_io'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objtools/seqmasks_io TMPL=seqmasks_io -w -j4 --jobserver-auth=7,8 all
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/dbindex'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/dbindex'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/alnmgr'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/alnmgr'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/dbindex'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/alnmgr'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/blast/dbindex TMPL=xalgoblastdbindex -w -j4 --jobserver-auth=7,8 all
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objtools/alnmgr TMPL=alnmgr -w -j4 --jobserver-auth=7,8 all
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/blastdb_format'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/blastdb_format'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/blastdb_format'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/blastdb_format'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/src/algo/blast/dbindex/dbindex_factory.cpp:40:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/dbindex/dbindex_factory.cpp:38:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/algo/blast/dbindex/dbindex.cpp:41:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/dbindex/dbindex.cpp:38:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/aln_generators.cpp:47:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/seqalign/Dense_seg_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/seqalign/Dense_seg.hpp:42,
from /<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/aln_generators.cpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/seq/Bioseq_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/seq/Bioseq.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/dbindex/dbindex_factory.cpp:41:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/seqid_comp.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/seqids_extractor.hpp:56,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/aln_tests.hpp:41,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/aln_stats.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/aln_builders.hpp:40,
from /<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/aln_builders.cpp:37:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/aln_builders.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_types_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/feat_ci.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:50,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_types_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/feat_ci.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:50,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbictype.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistre.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_stack.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/blastdb_format/invalid_data_exception.hpp:31,
from /<<PKGBUILDDIR>>/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp:34:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/seqmasks_io'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/seqmasks_io/mask_cmdline_args.cpp -o mask_cmdline_args.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp -o mask_bdb_reader.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp -o mask_fasta_reader.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/seqmasks_io/mask_writer.cpp -o mask_writer.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp -o mask_writer_fasta.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/seqmasks_io/mask_writer_int.cpp -o mask_writer_int.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/ncbi-blast+-iztKIn file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/seqid_comp.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/seqids_extractor.hpp:56,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/aln_tests.hpp:41,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/aln_stats.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/aln_converters.hpp:46,
from /<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/aln_converters.cpp:51:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/seqalign/Dense_seg_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/seqalign/Dense_seg.hpp:42,
from /<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/aln_converters.cpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/mod_reader.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:35:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_types_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/feat_ci.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:50,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/blastdb_format/blastdb_formatter.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbictype.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistre.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_stack.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/blastdb_format/invalid_data_exception.hpp:31,
from /<<PKGBUILDDIR>>/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp:35:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:52:32: warning: ‘ncbi::objects::CFastaReader::fAllSeqIds’ is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations]
52 | objects::CFastaReader::fAllSeqIds;
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here
92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note)
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:52:32: warning: ‘ncbi::objects::CFastaReader::fAllSeqIds’ is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations]
52 | objects::CFastaReader::fAllSeqIds;
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here
92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note)
| ^~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_types_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/feat_ci.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:50,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/blastdb_format/seq_formatter.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/blastdb_format/seq_formatter.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/mod_reader.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp:35:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbictype.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistre.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_stack.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp:34:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:54:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/mod_reader.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp:36:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbictype.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistre.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_stack.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:54:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: ‘ncbi::objects::CFastaReader::fAllSeqIds’ is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations]
94 | objects::CFastaReader::fAllSeqIds |
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here
92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note)
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: ‘ncbi::objects::CFastaReader::fAllSeqIds’ is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations]
94 | objects::CFastaReader::fAllSeqIds |
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here
92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note)
| ^~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:54:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:54:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objtools/seqmasks_io/mask_writer.cpp:37:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/seq/Seqdesc_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/seq/Seqdesc.hpp:42,
from /<<PKGBUILDDIR>>/c++/src/objtools/seqmasks_io/mask_writer.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/dbindex/dbindex.cpp:42:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/objtools/seqmasks_io/mask_writer.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/mod_reader.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/dbindex/dbindex.cpp:55:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/aln_explorer.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/aln_serial.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/aln_serial.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/pairwise_aln.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/aln_serial.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/alnmgr'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/aln_builders.cpp -o aln_builders.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/aln_converters.cpp -o aln_converters.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/aln_generators.cpp -o aln_generators.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/aln_seqid.cpp -o aln_seqid.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/aln_serial.cpp -o aln_serial.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/alndiag.cpp -o alndiag.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protectoIn file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/aln_explorer.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/alnmap.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/alnmap.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/seqalign/Dense_seg_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/seqalign/Dense_seg.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/alnmap.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/alnmap.cpp: In member function ‘ncbi::CRef<ncbi::objects::CSeq_align> ncbi::objects::CAlnMap::CreateAlignFromRange(const std::vector<int>&, ncbi::TSignedSeqPos, ncbi::TSignedSeqPos, ESegmentTrimFlag)’:
/<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/alnmap.cpp:1472:35: warning: comparison of integer expressions of different signedness: ‘ncbi::objects::CAlnMap::TNumrow’ {aka ‘int’} and ‘std::vector<int>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
1472 | for (TNumrow row = 0; row < selected_rows.size(); row++) {
| ~~~~^~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/aln_explorer.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/alnmap.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/alnmapprint.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/seqalign/Dense_seg_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/seqalign/Dense_seg.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/alnmap.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/alnseq.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/alnmatch.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/alnmatch.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/seqloc/Seq_id_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/seqloc/Seq_id.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/alnseq.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/alnseq.hpp:216:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
216 | auto_ptr<CAlnMixStarts> m_Starts;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/alnmatch.cpp: In static member function ‘static bool ncbi::objects::CAlnMixMatches::x_CompareChainScores(const ncbi::CRef<ncbi::objects::CAlnMixMatch>&, const ncbi::CRef<ncbi::objects::CAlnMixMatch>&)’:
/<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/alnmatch.cpp:76:55: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
76 | match1->m_ChainScore == match2->m_ChainScore &&
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
77 | match1->m_Score > match2->m_Score ||
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/alnmatch.cpp: In member function ‘void ncbi::objects::CAlnMixMatches::Add(const ncbi::objects::CDense_seg&, TAddFlags)’:
/<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/alnmatch.cpp:192:59: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
192 | (aln_seq1->m_StrandScore > 0 &&
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
193 | strand1 == eNa_strand_minus ||
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/alnmatch.cpp:196:59: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
196 | aln_seq2->m_StrandScore > 0 &&
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
197 | strand2 == eNa_strand_minus ||
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/alnmatch.cpp:198:59: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
198 | aln_seq2->m_StrandScore < 0 &&
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
199 | strand2 != eNa_strand_minus)) {
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/alnseq.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/alnmatch.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/alnmerger.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/alnmerger.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/seqalign/Seq_align_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/seqalign/Seq_align.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/alnmerger.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/alnseq.hpp:216:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
216 | auto_ptr<CAlnMixStarts> m_Starts;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/alnmerger.cpp: In member function ‘void ncbi::objects::CAlnMixMerger::x_CreateDenseg()’:
/<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/alnmerger.cpp:1210:44: warning: comparison of integer expressions of different signedness: ‘const unsigned int’ and ‘int’ [-Wsign-compare]
1210 | if (start_its_i->second->first != -1) {
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/alnseq.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/alnmatch.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/alnmix.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/alnmix.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/seqalign/Seq_align_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/seqalign/Seq_align.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/alnmix.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/alnseq.hpp:216:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
216 | auto_ptr<CAlnMixStarts> m_Starts;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/aln_explorer.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/alnmap.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/alnpos_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/alnpos_ci.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/seqalign/Dense_seg_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/seqalign/Dense_seg.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/alnmap.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
r-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/alnmap.cpp -o alnmap.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/alnmapprint.cpp -o alnmapprint.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/alnmatch.cpp -o alnmatch.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/alnmerger.cpp -o alnmerger.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/alnmix.cpp -o alnmix.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/alnpos_ci.cpp -o alnpos_ci.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<BUILDDIR>>/ncbi-bIn file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/alnseq.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/alnsegments.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/alnsegments.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/alnsegments.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/alnseq.hpp:216:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
216 | auto_ptr<CAlnMixStarts> m_Starts;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/alnsegments.cpp: In member function ‘void ncbi::objects::CAlnMixSegments::FillUnalignedRegions()’:
/<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/alnsegments.cpp:311:27: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
311 | if (plus && prev_start_plus_len < start ||
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/aln_explorer.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/alnmap.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/alnseq.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/seqalign/Dense_seg_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/seqalign/Dense_seg.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/alnmap.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/alnseq.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/alnseq.hpp:216:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
216 | auto_ptr<CAlnMixStarts> m_Starts;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/aln_explorer.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/alnmap.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/alnvec.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/alnvec.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/seqalign/Dense_seg_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/seqalign/Dense_seg.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/alnmap.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/aln_explorer.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/alnvec_iterator.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/alnvec_iterator.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/alnvec_iterator.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/aln_explorer.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/alnmap.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/alnvec.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/alnvecprint.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/seqalign/Dense_seg_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/seqalign/Dense_seg.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/alnmap.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/alnvecprint.cpp: In member function ‘void ncbi::objects::CAlnVecPrinter::PopsetStyle(int, EAlgorithm)’:
/<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/alnvecprint.cpp:136:64: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
136 | if (left_seg < 0 || seg > right_seg && right_seg > 0) {
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/alnvecprint.cpp: In member function ‘void ncbi::objects::CAlnVecPrinter::ClustalStyle(int, EAlgorithm)’:
/<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/alnvecprint.cpp:300:64: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
300 | if (left_seg < 0 || seg > right_seg && right_seg > 0) {
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/sparse_aln.hpp:40,
from /<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/sparse_aln.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/sparse_aln.hpp:34:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:54,
from /<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/sparse_aln.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/sparse_aln.cpp: In member function ‘std::string& ncbi::CSparseAln::GetAlnSeqString(ncbi::IAlnExplorer::TNumrow, std::string&, const ncbi::IAlnExplorer::TSignedRange&, bool) const’:
/<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/sparse_aln.cpp:702:46: warning: comparison of integer expressions of different signedness: ‘ncbi::COpenRange<int>::position_type’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
702 | if (translate && aln_range.GetLength() >= trim_from + trim_to) {
| ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/sparse_aln.hpp:38:
In member function ‘ncbi::CAlignRangeCollExtender<TColl>::position_type ncbi::CAlignRangeCollExtender<TColl>::GetSecondFrom() const [with TColl = ncbi::CAlignRangeCollectionList<ncbi::CAlignRange<int> >]’,
inlined from ‘ncbi::CRange<typename TAlnRange::position_type> ncbi::CAlignRangeCollExtender<TColl>::GetSecondRange() const [with TColl = ncbi::CAlignRangeCollectionList<ncbi::CAlignRange<int> >]’ at /<<PKGBUILDDIR>>/c++/include/util/align_range_coll.hpp:1811:68,
inlined from ‘void ncbi::CSparseAln::x_Build(const ncbi::CAnchoredAln&)’ at /<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/sparse_aln.cpp:230:49:
/<<PKGBUILDDIR>>/c++/include/util/align_range_coll.hpp:1790:16: warning: ‘*(__vector(1) int*)((char*)&ext + offsetof(ncbi::CAlignRangeCollExtender<ncbi::CAlignRangeCollectionList<ncbi::CAlignRange<int> > >,ncbi::CAlignRangeCollExtender<ncbi::CAlignRangeCollectionList<ncbi::CAlignRange<int> > >::m_From))’ may be used uninitialized [-Wmaybe-uninitialized]
1790 | return m_From;
| ^~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/sparse_aln.cpp: In member function ‘void ncbi::CSparseAln::x_Build(const ncbi::CAnchoredAln&)’:
/<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/sparse_aln.cpp:228:46: note: ‘ext’ declared here
228 | CAlignRangeCollExtender<TAlnRngColl> ext(*m_Aln->GetPairwiseAlns()[row]);
| ^~~
In member function ‘ncbi::CAlignRangeCollExtender<TColl>::position_type ncbi::CAlignRangeCollExtender<TColl>::GetSecondFrom() const [with TColl = ncbi::CAlignRangeCollectionList<ncbi::CAlignRange<int> >]’,
inlined from ‘ncbi::CRange<typename TAlnRange::position_type> ncbi::CAlignRangeCollExtender<TColl>::GetSecondRange() const [with TColl = ncbi::CAlignRangeCollectionList<ncbi::CAlignRange<int> >]’ at /<<PKGBUILDDIR>>/c++/include/util/align_range_coll.hpp:1811:68,
inlined from ‘void ncbi::CSparseAln::x_Build(const ncbi::CAnchoredAln&)’ at /<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/sparse_aln.cpp:230:49:
/<<PKGBUILDDIR>>/c++/include/util/align_range_coll.hpp:1790:16: warning: ‘*(__vector(1) int*)((char*)&ext + offsetof(ncbi::CAlignRangeCollExtender<ncbi::CAlignRangeCollectionList<ncbi::CAlignRange<int> > >,ncbi::CAlignRangeCollExtender<ncbi::CAlignRangeCollectionList<ncbi::CAlignRange<int> > >::m_ToOpen))’ may be used uninitialized [-Wmaybe-uninitialized]
1790 | return m_From;
| ^~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/sparse_aln.cpp: In member function ‘void ncbi::CSparseAln::x_Build(const ncbi::CAnchoredAln&)’:
/<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/sparse_aln.cpp:228:46: note: ‘ext’ declared here
228 | CAlignRangeCollExtender<TAlnRngColl> ext(*m_Aln->GetPairwiseAlns()[row]);
| ^~~
last+-2.12.0+ds/c++/src/objtools/alnmgr/alnsegments.cpp -o alnsegments.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/alnseq.cpp -o alnseq.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/alnvec.cpp -o alnvec.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/alnvec_iterator.cpp -o alnvec_iterator.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/alnvecprint.cpp -o alnvecprint.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/pairwise_aln.cpp -o pairwise_aln.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/sparse_aln.cpp -o sparse_aln.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/sparse_aln.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/sparse_ci.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/sparse_ci.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbictype.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistre.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_stack.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/sparse_ci.hpp:35:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/seq_loc_util.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/alntext.cpp:40:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/alntext.cpp:34:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:54,
from /<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/alntext.cpp:41:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/aln_explorer.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/alnmap.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/alnvec.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/score_builder_base.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/score_builder_base.hpp:35,
from /<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/score_builder_base.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:54,
from /<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/score_builder_base.cpp:57:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbitime.hpp:65,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_system.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbifile.hpp:53,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/dbindex/dbindex_search.cpp:38:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<long long unsigned int>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘ncbi::blastdbindex::CDbIndex::CSearchResults::CSearchResults(long unsigned int, ncbi::blastdbindex::CDbIndex::TSeqNum, ncbi::blastdbindex::CDbIndex::TSeqNum, const TWord*, size_t)’ at /<<PKGBUILDDIR>>/c++/include/algo/blast/dbindex/dbindex.hpp:521:39,
inlined from ‘ncbi::CConstRef<ncbi::blastdbindex::CDbIndex::CSearchResults> ncbi::blastdbindex::CSearch_Base<LEGACY, NHITS, derived_t>::operator()() [with bool LEGACY = true; long unsigned int NHITS = 0; derived_t = ncbi::blastdbindex::CSearch<true, 0>]’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/dbindex/dbindex_search.cpp:1328:13:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘ncbi::blastdbindex::CDbIndex::CSearchResults::CSearchResults(long unsigned int, ncbi::blastdbindex::CDbIndex::TSeqNum, ncbi::blastdbindex::CDbIndex::TSeqNum, const TWord*, size_t)’ at /<<PKGBUILDDIR>>/c++/include/algo/blast/dbindex/dbindex.hpp:521:39,
inlined from ‘ncbi::CConstRef<ncbi::blastdbindex::CDbIndex::CSearchResults> ncbi::blastdbindex::CSearch_Base<LEGACY, NHITS, derived_t>::operator()() [with bool LEGACY = false; long unsigned int NHITS = 0; derived_t = ncbi::blastdbindex::CSearch<false, 0>]’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/dbindex/dbindex_search.cpp:1328:13:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘ncbi::blastdbindex::CDbIndex::CSearchResults::CSearchResults(long unsigned int, ncbi::blastdbindex::CDbIndex::TSeqNum, ncbi::blastdbindex::CDbIndex::TSeqNum, const TWord*, size_t)’ at /<<PKGBUILDDIR>>/c++/include/algo/blast/dbindex/dbindex.hpp:521:39,
inlined from ‘ncbi::CConstRef<ncbi::blastdbindex::CDbIndex::CSearchResults> ncbi::blastdbindex::CSearch_Base<LEGACY, NHITS, derived_t>::operator()() [with bool LEGACY = true; long unsigned int NHITS = 1; derived_t = ncbi::blastdbindex::CSearch<true, 1>]’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/dbindex/dbindex_search.cpp:1328:13:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘ncbi::blastdbindex::CDbIndex::CSearchResults::CSearchResults(long unsigned int, ncbi::blastdbindex::CDbIndex::TSeqNum, ncbi::blastdbindex::CDbIndex::TSeqNum, const TWord*, size_t)’ at /<<PKGBUILDDIR>>/c++/include/algo/blast/dbindex/dbindex.hpp:521:39,
inlined from ‘ncbi::CConstRef<ncbi::blastdbindex::CDbIndex::CSearchResults> ncbi::blastdbindex::CSearch_Base<LEGACY, NHITS, derived_t>::operator()() [with bool LEGACY = false; long unsigned int NHITS = 1; derived_t = ncbi::blastdbindex::CSearch<false, 1>]’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/dbindex/dbindex_search.cpp:1328:13:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/dbindex/dbindex.cpp: In function ‘const ncbi::blastdbindex::SIndexHeader ncbi::blastdbindex::ReadIndexHeader(void*) [with bool LEGACY = true]’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/dbindex/dbindex.cpp:306:19: warning: variable ‘tmp’ set but not used [-Wunused-but-set-variable]
306 | unsigned long tmp;
| ^~~
fv/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp -o mask_writer_tab.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp -o mask_writer_seqloc.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp -o mask_writer_blastdb_maskinfo.o
/bin/rm -f libseqmasks_io.so .libseqmasks_io.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libseqmasks_io.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC mask_cmdline_args.o mask_bdb_reader.o mask_fasta_reader.o mask_writer.o mask_writer_fasta.o mask_writer_int.o mask_writer_tab.o mask_writer_seqloc.o mask_writer_blastdb_maskinfo.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lseqdb -lxobjread -lxobjutil -lxobjmgr -lblastdb -lseqset -lseq -lxser -lxncbi -llmdb -lpthread -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqmasks_io.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libseqmasks_io.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libseqmasks_io.so
/bin/ln -f .seqmasks_io.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.seqmasks_io.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/seqmasks_io'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/seqmasks_io'
cd objtools/edit/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=edit UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/edit'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/edit'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/edit'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/edit'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/edit'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objtools/edit TMPL=edit -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/objtools/edit/promote.cpp:45:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/edit/promote.cpp:32:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_types_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/feat_ci.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:50,
from /<<PKGBUILDDIR>>/c++/src/objtools/edit/gene_utils.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/edit/gene_utils.cpp:32:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:54:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:54,
from /<<PKGBUILDDIR>>/c++/src/objtools/edit/promote.cpp:52:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/edit/promote.cpp: In member function ‘void ncbi::objects::edit::CPromote::x_PromoteCdregion(ncbi::objects::CSeq_feat&, TRnaMap*) const’:
/<<PKGBUILDDIR>>/c++/src/objtools/edit/promote.cpp:224:51: warning: ‘static void ncbi::objects::CCdregion_translate::TranslateCdregion(std::string&, const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, bool, bool, bool*, ETranslationLengthProblemOptions)’ is deprecated [-Wdeprecated-declarations]
224 | CCdregion_translate::TranslateCdregion(data,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
225 | feat,
| ~~~~~
226 | x_Scope(),
| ~~~~~~~~~~
227 | include_stop,
| ~~~~~~~~~~~~~
228 | remove_trailingX);
| ~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:940:17: note: declared here
940 | static void TranslateCdregion(string& prot,
| ^~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_types_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/feat_ci.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/autodef.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/objtools/edit/autodef_with_tax.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/objtools/edit/autodef_with_tax.cpp:33:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/edit/autodef_with_tax.hpp:35:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /usr/include/c++/12/map:60,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:45,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/usr/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const ncbi::objects::CBioseq_Handle&>, std::tuple<>}; _Key = ncbi::objects::CBioseq_Handle; _Val = std::pair<const ncbi::objects::CBioseq_Handle, ncbi::CConstRef<ncbi::objects::CSeq_feat> >; _KeyOfValue = std::_Select1st<std::pair<const ncbi::objects::CBioseq_Handle, ncbi::CConstRef<ncbi::objects::CSeq_feat> > >; _Compare = std::less<ncbi::objects::CBioseq_Handle>; _Alloc = std::allocator<std::pair<const ncbi::objects::CBioseq_Handle, ncbi::CConstRef<ncbi::objects::CSeq_feat> > >]’:
/usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree<ncbi::objects::CBioseq_Handle, std::pair<const ncbi::objects::CBioseq_Handle, ncbi::CConstRef<ncbi::objects::CSeq_feat> >, std::_Select1st<std::pair<const ncbi::objects::CBioseq_Handle, ncbi::CConstRef<ncbi::objects::CSeq_feat> > >, std::less<ncbi::objects::CBioseq_Handle>, std::allocator<std::pair<const ncbi::objects::CBioseq_Handle, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >::const_iterator’ changed in GCC 7.1
2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/map:61:
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = ncbi::objects::CBioseq_Handle; _Tp = ncbi::CConstRef<ncbi::objects::CSeq_feat>; _Compare = std::less<ncbi::objects::CBioseq_Handle>; _Alloc = std::allocator<std::pair<const ncbi::objects::CBioseq_Handle, ncbi::CConstRef<ncbi::objects::CSeq_feat> > >]’,
inlined from ‘void ncbi::objects::edit::CPromote::x_CopyCdregionToRNA(const ncbi::objects::CSeq_feat&, ncbi::objects::CBioseq_Handle&, TRnaMap*) const’ at /<<PKGBUILDDIR>>/c++/src/objtools/edit/promote.cpp:318:49:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<ncbi::objects::CBioseq_Handle, std::pair<const ncbi::objects::CBioseq_Handle, ncbi::CConstRef<ncbi::objects::CSeq_feat> >, std::_Select1st<std::pair<const ncbi::objects::CBioseq_Handle, ncbi::CConstRef<ncbi::objects::CSeq_feat> > >, std::less<ncbi::objects::CBioseq_Handle>, std::allocator<std::pair<const ncbi::objects::CBioseq_Handle, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = ncbi::objects::CBioseq_Handle; _Tp = ncbi::CConstRef<ncbi::objects::CSeq_feat>; _Compare = std::less<ncbi::objects::CBioseq_Handle>; _Alloc = std::allocator<std::pair<const ncbi::objects::CBioseq_Handle, ncbi::CConstRef<ncbi::objects::CSeq_feat> > >]’,
inlined from ‘void ncbi::objects::edit::CPromote::x_PromoteFeatures(ncbi::objects::CSeq_annot&) const’ at /<<PKGBUILDDIR>>/c++/src/objtools/edit/promote.cpp:163:36:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<ncbi::objects::CBioseq_Handle, std::pair<const ncbi::objects::CBioseq_Handle, ncbi::CConstRef<ncbi::objects::CSeq_feat> >, std::_Select1st<std::pair<const ncbi::objects::CBioseq_Handle, ncbi::CConstRef<ncbi::objects::CSeq_feat> > >, std::less<ncbi::objects::CBioseq_Handle>, std::allocator<std::pair<const ncbi::objects::CBioseq_Handle, ncbi::CConstRef<ncbi::objects::CSeq_feat> > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/objtools/edit/field_handler.cpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/edit/field_handler.cpp:32:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:54,
from /<<PKGBUILDDIR>>/c++/src/objtools/edit/field_handler.cpp:43:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_types_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/align_ci.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/objtools/edit/seq_entry_edit.cpp:45:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/edit/seq_entry_edit.cpp:32:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:54,
from /<<PKGBUILDDIR>>/c++/src/objtools/edit/seq_entry_edit.cpp:57:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/edit/seq_entry_edit.cpp: In function ‘void ncbi::objects::edit::ConvertRawToDeltaByNs(ncbi::objects::CSeq_inst&, size_t, int, size_t, int, bool, int, int, int)’:
/<<PKGBUILDDIR>>/c++/src/objtools/edit/seq_entry_edit.cpp:1854:71: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
1854 | if (n_len >= min_unknown && (max_unknown < 0 || n_len <= max_unknown)) {
| ~~~~~~^~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/edit/seq_entry_edit.cpp:1856:74: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
1856 | } else if (n_len >= min_known && (max_known < 0 || n_len <= max_known)) {
| ~~~~~~^~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/edit/seq_entry_edit.cpp:1879:63: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
1879 | if (n_len >= min_unknown && (max_unknown < 0 || n_len <= max_unknown)) {
| ~~~~~~^~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/edit/seq_entry_edit.cpp:1881:66: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
1881 | } else if (n_len >= min_known && (max_known < 0 || n_len <= max_known)) {
| ~~~~~~^~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/edit/seq_entry_edit.cpp: In function ‘void ncbi::objects::edit::TrimSeqData(ncbi::objects::CBioseq_Handle, ncbi::CRef<ncbi::objects::CSeq_inst>, const TCuts&)’:
/<<PKGBUILDDIR>>/c++/src/objtools/edit/seq_entry_edit.cpp:2481:16: warning: enumeration value ‘eSeqSubMap’ not handled in switch [-Wswitch]
2481 | switch (seqmap_ci.GetType()) {
| ^
/<<PKGBUILDDIR>>/c++/src/objtools/edit/seq_entry_edit.cpp:2481:16: warning: enumeration value ‘eSeqRef’ not handled in switch [-Wswitch]
/<<PKGBUILDDIR>>/c++/src/objtools/edit/seq_entry_edit.cpp:2481:16: warning: enumeration value ‘eSeqEnd’ not handled in switch [-Wswitch]
/<<PKGBUILDDIR>>/c++/src/objtools/edit/seq_entry_edit.cpp:2481:16: warning: enumeration value ‘eSeqChunk’ not handled in switch [-Wswitch]
/<<PKGBUILDDIR>>/c++/src/objtools/edit/seq_entry_edit.cpp:2481:16: warning: enumeration value ‘eSeqLiteral’ not handled in switch [-Wswitch]
/<<PKGBUILDDIR>>/c++/src/objtools/edit/seq_entry_edit.cpp: In function ‘bool ncbi::objects::edit::s_FindSegment(const ncbi::objects::CDense_seg&, ncbi::objects::CDense_seg_Base::TDim, ncbi::TSeqPos, ncbi::objects::CDense_seg_Base::TNumseg&, ncbi::TSeqPos&)’:
/<<PKGBUILDDIR>>/c++/src/objtools/edit/seq_entry_edit.cpp:2839:21: warning: comparison of integer expressions of different signedness: ‘ncbi::TSeqPos’ {aka ‘unsigned int’} and ‘ncbi::TSignedSeqPos’ {aka ‘int’} [-Wsign-compare]
2839 | if (pos >= start && pos < start + len) {
| ~~~~^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/edit/seq_entry_edit.cpp:2839:39: warning: comparison of integer expressions of different signedness: ‘ncbi::TSeqPos’ {aka ‘unsigned int’} and ‘ncbi::TSignedSeqPos’ {aka ‘int’} [-Wsign-compare]
2839 | if (pos >= start && pos < start + len) {
| ~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/edit/seq_entry_edit.cpp: In function ‘void ncbi::objects::edit::TrimSeqAlign(ncbi::objects::CBioseq_Handle, ncbi::CRef<ncbi::objects::CSeq_align>, const TCuts&)’:
/<<PKGBUILDDIR>>/c++/src/objtools/edit/seq_entry_edit.cpp:3043:32: warning: comparison of integer expressions of different signedness: ‘ncbi::TSignedSeqPos’ {aka ‘int’} and ‘ncbi::TSeqPos’ {aka ‘unsigned int’} [-Wsign-compare]
3043 | else if (seg_start < cut_from) {
| ~~~~~~~~~~^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/edit/seq_entry_edit.cpp:3046:32: warning: comparison of integer expressions of different signedness: ‘ncbi::TSignedSeqPos’ {aka ‘int’} and ‘ncbi::TSeqPos’ {aka ‘unsigned int’} [-Wsign-compare]
3046 | else if (seg_start >= cut_from &&
| ~~~~~~~~~~^~~~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/edit'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/edit/gene_utils.cpp -o gene_utils.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/edit/seq_entry_edit.cpp -o seq_entry_edit.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/edit/promote.cpp -o promote.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/edit/autodef_with_tax.cpp -o autodef_with_tax.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/edit/field_handler.cpp -o field_handler.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/edit/apply_object.cpp -o apply_object.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objtools/edit/string_constraint.hpp:35,
from /<<PKGBUILDDIR>>/c++/src/objtools/edit/string_constraint.cpp:33:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/edit/string_constraint.cpp:32:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/objtools/edit/apply_object.cpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/edit/apply_object.cpp:32:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/objtools/edit/seqid_guesser.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/general/Dbtag_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/general/Dbtag.hpp:44,
from /<<PKGBUILDDIR>>/c++/src/objtools/edit/seqid_guesser.cpp:31:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objtools/edit/dblink_field.hpp:35,
from /<<PKGBUILDDIR>>/c++/src/objtools/edit/dblink_field.cpp:37:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/general/Dbtag_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/general/Dbtag.hpp:44,
from /<<PKGBUILDDIR>>/c++/src/objtools/edit/dblink_field.cpp:32:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/edit/seqid_guesser.cpp: In constructor ‘ncbi::objects::edit::CSeqIdGuesser::CSeqIdGuesser(ncbi::objects::CSeq_entry_Handle)’:
/<<PKGBUILDDIR>>/c++/src/objtools/edit/seqid_guesser.cpp:92:48: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, EOccurrence, ECase)’ is deprecated [-Wdeprecated-declarations]
92 | size_t pos = NStr::Find(tag_str, "/", 0, string::npos, NStr::eLast);
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:5344:11: note: declared here
5344 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern,
| ^~~~
/<<PKGBUILDDIR>>/c++/src/objtools/edit/seqid_guesser.cpp: In static member function ‘static std::vector<std::__cxx11::basic_string<char> > ncbi::objects::edit::CSeqIdGuesser::GetIdStrings(ncbi::objects::CBioseq_Handle)’:
/<<PKGBUILDDIR>>/c++/src/objtools/edit/seqid_guesser.cpp:171:44: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, EOccurrence, ECase)’ is deprecated [-Wdeprecated-declarations]
171 | size_t pos = NStr::Find(tag_str, "/", 0, string::npos, NStr::eLast);
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:5344:11: note: declared here
5344 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern,
| ^~~~
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const ncbi::objects::CBioseq_Handle&}; _Tp = ncbi::objects::CBioseq_Handle; _Alloc = std::allocator<ncbi::objects::CBioseq_Handle>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<ncbi::objects::CBioseq_Handle>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ncbi::objects::CBioseq_Handle; _Alloc = std::allocator<ncbi::objects::CBioseq_Handle>]’,
inlined from ‘std::vector<ncbi::objects::CBioseq_Handle> ncbi::objects::edit::CSeqIdGuesser::FindMatches(ncbi::CRef<ncbi::objects::edit::CStringConstraint>)’ at /<<PKGBUILDDIR>>/c++/src/objtools/edit/seqid_guesser.cpp:234:35:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CBioseq_Handle*, std::vector<ncbi::objects::CBioseq_Handle> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ncbi::objects::CBioseq_Handle; _Alloc = std::allocator<ncbi::objects::CBioseq_Handle>]’,
inlined from ‘std::vector<ncbi::objects::CBioseq_Handle> ncbi::objects::edit::CSeqIdGuesser::FindMatches(ncbi::CRef<ncbi::objects::edit::CStringConstraint>)’ at /<<PKGBUILDDIR>>/c++/src/objtools/edit/seqid_guesser.cpp:244:39:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CBioseq_Handle*, std::vector<ncbi::objects::CBioseq_Handle> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/edit/string_constraint.cpp -o string_constraint.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/edit/seqid_guesser.cpp -o seqid_guesser.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/edit/dblink_field.cpp -o dblink_field.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/edit/struc_comm_field.cpp -o struc_comm_field.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/edit/text_desc_field.cpp -o text_desc_field.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/edit/gb_block_field.cpp -o gb_block_field.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<BUILDDIR>>/ncbi-In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objtools/edit/text_desc_field.hpp:35,
from /<<PKGBUILDDIR>>/c++/src/objtools/edit/text_desc_field.cpp:41:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/edit/text_desc_field.cpp:32:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objtools/edit/gb_block_field.hpp:35,
from /<<PKGBUILDDIR>>/c++/src/objtools/edit/gb_block_field.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/edit/gb_block_field.cpp:32:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/seq_loc_util.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objtools/edit/link_cds_mrna.cpp:45:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/seqfeat/RNA_ref_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/seqfeat/RNA_ref.hpp:44,
from /<<PKGBUILDDIR>>/c++/src/objtools/edit/link_cds_mrna.cpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objtools/edit/struc_comm_field.cpp:35:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/edit/struc_comm_field.cpp:32:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objtools/edit/struc_comm_field.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/edit/struc_comm_field.cpp:47:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objtools/edit/loc_edit.hpp:35,
from /<<PKGBUILDDIR>>/c++/src/objtools/edit/loc_edit.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/edit/loc_edit.cpp:32:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objtools/edit/feattable_edit.cpp:44:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/general/Object_id_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/general/Object_id.hpp:42,
from /<<PKGBUILDDIR>>/c++/src/objtools/edit/feattable_edit.cpp:35:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:54,
from /<<PKGBUILDDIR>>/c++/src/objtools/edit/loc_edit.cpp:57:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/objtools/edit/feattable_edit.cpp:45:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objtools/edit/cds_fix.hpp:35,
from /<<PKGBUILDDIR>>/c++/src/objtools/edit/cds_fix.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/edit/cds_fix.cpp:32:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objtools/edit/feattable_edit.cpp:47:
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objtools/edit/mail_report.hpp:35,
from /<<PKGBUILDDIR>>/c++/src/objtools/edit/mail_report.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/edit/mail_report.cpp:32:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:54,
from /<<PKGBUILDDIR>>/c++/src/objtools/edit/cds_fix.cpp:53:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/edit/cds_fix.cpp: In function ‘bool ncbi::objects::edit::AdjustForCDSPartials(const ncbi::objects::CSeq_feat&, ncbi::objects::CSeq_entry_Handle)’:
/<<PKGBUILDDIR>>/c++/src/objtools/edit/cds_fix.cpp:457:57: warning: ‘bool ncbi::objects::edit::AdjustProteinMolInfoToMatchCDS(ncbi::objects::CMolInfo&, const ncbi::objects::CSeq_feat&)’ is deprecated [-Wdeprecated-declarations]
457 | any_change |= AdjustProteinMolInfoToMatchCDS((*it)->SetMolinfo(), cds);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/edit/cds_fix.cpp:366:6: note: declared here
366 | bool AdjustProteinMolInfoToMatchCDS(CMolInfo& molinfo, const CSeq_feat& cds)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/edit/cds_fix.cpp:463:39: warning: ‘bool ncbi::objects::edit::AdjustProteinMolInfoToMatchCDS(ncbi::objects::CMolInfo&, const ncbi::objects::CSeq_feat&)’ is deprecated [-Wdeprecated-declarations]
463 | AdjustProteinMolInfoToMatchCDS(new_molinfo_desc->SetMolinfo(), cds);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/edit/cds_fix.cpp:366:6: note: declared here
366 | bool AdjustProteinMolInfoToMatchCDS(CMolInfo& molinfo, const CSeq_feat& cds)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:54,
from /<<PKGBUILDDIR>>/c++/src/objtools/edit/mail_report.cpp:49:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /usr/include/c++/12/bits/stl_algobase.h:71,
from /usr/include/c++/12/algorithm:60,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:180:
/usr/include/c++/12/bits/predefined_ops.h: In function ‘constexpr bool __gnu_cxx::__ops::_Iter_comp_iter<_Compare>::operator()(_Iterator1, _Iterator2) [with _Iterator1 = __gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >; _Iterator2 = __gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >; _Compare = bool (*)(const ncbi::objects::CSeq_id_Handle&, ncbi::objects::CSeq_id_Handle)]’:
/usr/include/c++/12/bits/predefined_ops.h:157:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
157 | operator()(_Iterator1 __it1, _Iterator2 __it2)
| ^~~~~~~~
/usr/include/c++/12/bits/predefined_ops.h:157:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
In file included from /usr/include/c++/12/algorithm:61:
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ncbi::objects::CSeq_id_Handle&, ncbi::objects::CSeq_id_Handle)>]’:
/usr/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
1782 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ncbi::objects::CSeq_id_Handle&, ncbi::objects::CSeq_id_Handle)>]’:
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
1802 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const ncbi::objects::CSeq_id_Handle&}; _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator<ncbi::objects::CSeq_id_Handle>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<ncbi::objects::CSeq_id_Handle>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/bits/stl_algo.h:60:
/usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _Distance = int; _Tp = ncbi::objects::CSeq_id_Handle; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ncbi::objects::CSeq_id_Handle&, ncbi::objects::CSeq_id_Handle)>]’:
/usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ncbi::objects::CSeq_id_Handle&, ncbi::objects::CSeq_id_Handle)>]’:
/usr/include/c++/12/bits/stl_heap.h:340:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
340 | __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
| ^~~~~~~~~~~
/usr/include/c++/12/bits/stl_heap.h:340:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ncbi::objects::CSeq_id_Handle&, ncbi::objects::CSeq_id_Handle)>]’:
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
1908 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
In function ‘void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ncbi::objects::CSeq_id_Handle&, ncbi::objects::CSeq_id_Handle)>]’,
inlined from ‘_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ncbi::objects::CSeq_id_Handle&, ncbi::objects::CSeq_id_Handle)>]’ at /usr/include/c++/12/bits/stl_algo.h:1887:34,
inlined from ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ncbi::objects::CSeq_id_Handle&, ncbi::objects::CSeq_id_Handle)>]’ at /usr/include/c++/12/bits/stl_algo.h:1921:38:
/usr/include/c++/12/bits/stl_algo.h:87:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
87 | if (__comp(__b, __c))
| ~~~~~~^~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:89:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
89 | else if (__comp(__a, __c))
| ~~~~~~^~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:94:22: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
94 | else if (__comp(__a, __c))
| ~~~~~~^~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:96:22: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
96 | else if (__comp(__b, __c))
| ~~~~~~^~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ncbi::objects::CSeq_id_Handle&, ncbi::objects::CSeq_id_Handle)>]’:
/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ncbi::objects::CSeq_id_Handle&, ncbi::objects::CSeq_id_Handle)>]’,
inlined from ‘void std::__partial_sort(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ncbi::objects::CSeq_id_Handle&, ncbi::objects::CSeq_id_Handle)>]’ at /usr/include/c++/12/bits/stl_algo.h:1900:25,
inlined from ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ncbi::objects::CSeq_id_Handle&, ncbi::objects::CSeq_id_Handle)>]’ at /usr/include/c++/12/bits/stl_algo.h:1916:27:
/usr/include/c++/12/bits/stl_algo.h:1629:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
1629 | std::__make_heap(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator<ncbi::objects::CSeq_id_Handle>]’,
inlined from ‘void ncbi::objects::edit::CFeatTableEdit::GenerateLocusTags()’ at /<<PKGBUILDDIR>>/c++/src/objtools/edit/feattable_edit.cpp:1345:31:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ncbi::objects::CSeq_id_Handle&, ncbi::objects::CSeq_id_Handle)>]’,
inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _Compare = bool (*)(const ncbi::objects::CSeq_id_Handle&, ncbi::objects::CSeq_id_Handle)]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18,
inlined from ‘void ncbi::objects::edit::CFeatTableEdit::GenerateLocusTags()’ at /<<PKGBUILDDIR>>/c++/src/objtools/edit/feattable_edit.cpp:1348:14:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ncbi::objects::CSeq_id_Handle&, ncbi::objects::CSeq_id_Handle)>]’,
inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ncbi::objects::CSeq_id_Handle&, ncbi::objects::CSeq_id_Handle)>]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31,
inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, vector<ncbi::objects::CSeq_id_Handle> >; _Compare = bool (*)(const ncbi::objects::CSeq_id_Handle&, ncbi::objects::CSeq_id_Handle)]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18,
inlined from ‘void ncbi::objects::edit::CFeatTableEdit::GenerateLocusTags()’ at /<<PKGBUILDDIR>>/c++/src/objtools/edit/feattable_edit.cpp:1348:14:
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
blast+-2.12.0+ds/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/edit/link_cds_mrna.cpp -o link_cds_mrna.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/edit/cds_fix.cpp -o cds_fix.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/edit/loc_edit.cpp -o loc_edit.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/edit/mail_report.cpp -o mail_report.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/edit/feattable_edit.cpp -o feattable_edit.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/edit/gaps_edit.cpp -o gaps_edit.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/edit/source_edit.cpp -o source_edit.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-prot/<<PKGBUILDDIR>>/c++/src/objtools/edit/parse_text_options.cpp: In function ‘ncbi::SIZE_TYPE ncbi::objects::edit::FindWithOptions(const std::string&, const std::string&, ncbi::SIZE_TYPE, bool, bool)’:
/<<PKGBUILDDIR>>/c++/src/objtools/edit/parse_text_options.cpp:47:25: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, EOccurrence, ECase)’ is deprecated [-Wdeprecated-declarations]
47 | pos = NStr::Find(str, pattern, pos, NPOS, NStr::eFirst, str_case);
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/edit/parse_text_options.hpp:34,
from /<<PKGBUILDDIR>>/c++/src/objtools/edit/parse_text_options.cpp:33:
/<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:5344:11: note: declared here
5344 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern,
| ^~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objtools/edit/source_edit.hpp:34,
from /<<PKGBUILDDIR>>/c++/src/objtools/edit/source_edit.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/edit/source_edit.cpp:32:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objtools/edit/string_constraint.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objtools/edit/seqid_guesser.hpp:35,
from /<<PKGBUILDDIR>>/c++/src/objtools/edit/rna_edit.cpp:33:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/edit/rna_edit.cpp:32:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/edit/rna_edit.cpp: In member function ‘bool ncbi::objects::edit::CFindITSParser::IsLengthTooLarge(const std::string&, int, int, const std::vector<int>&, const std::vector<int>&, const std::vector<bool>&, int)’:
/<<PKGBUILDDIR>>/c++/src/objtools/edit/rna_edit.cpp:259:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<bool>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
259 | for (int j = i + 1; j < spans.size(); j++)
| ~~^~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/objtools/edit/external_annots.cpp:36:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objtools/edit/gap_trim.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objtools/edit/gap_trim.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/edit/gap_trim.cpp:34:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
ector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/edit/rna_edit.cpp -o rna_edit.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/edit/remote_updater.cpp -o remote_updater.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/edit/parse_text_options.cpp -o parse_text_options.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/edit/publication_edit.cpp -o publication_edit.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/edit/gap_trim.cpp -o gap_trim.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/edit/external_annots.cpp -o external_annots.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<BUILDDIR>>/ncbi-blast+-2.1In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:54,
from /<<PKGBUILDDIR>>/c++/src/objtools/edit/gap_trim.cpp:44:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objtools/edit/remote_updater.cpp:59:
/<<PKGBUILDDIR>>/c++/include/objtools/edit/remote_updater.hpp:129:4: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
129 | auto_ptr<CCachedTaxon3_impl> m_taxClient;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/seqfeat/Org_ref_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/seqfeat/Org_ref.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objects/taxon3/itaxon3.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objects/taxon3/taxon3.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/edit/remote_updater.cpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/edit/remote_updater.cpp:292:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
292 | auto_ptr<CTaxon3> m_taxon;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/edit/remote_updater.cpp:293:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
293 | auto_ptr<CCachedReplyMap> m_cache;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/edit/remote_updater.cpp: In member function ‘void ncbi::objects::edit::CRemoteUpdater::UpdateOrgFromTaxon(FLogger, ncbi::objects::CSeq_entry_EditHandle&)’:
/<<PKGBUILDDIR>>/c++/src/objtools/edit/remote_updater.cpp:604:31: warning: ‘void ncbi::objects::edit::CRemoteUpdater::UpdateOrgFromTaxon(FLogger, ncbi::objects::CSeqdesc&)’ is deprecated [-Wdeprecated-declarations]
604 | UpdateOrgFromTaxon(logger, (CSeqdesc&)*desc_it);
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/edit/remote_updater.cpp:296:6: note: declared here
296 | void CRemoteUpdater::UpdateOrgFromTaxon(FLogger logger, CSeqdesc& obj)
| ^~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objtools/edit/external_annots.cpp:42:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/edit/external_annots.hpp:35,
from /<<PKGBUILDDIR>>/c++/src/objtools/edit/external_annots.cpp:34:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/objtools/edit/external_annots.cpp:43:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/seq_loc_util.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objtools/edit/feature_propagate.cpp:43:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/edit/feature_propagate.cpp:32:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /usr/include/c++/12/bits/stl_algobase.h:64,
from /usr/include/c++/12/algorithm:60,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:180:
In constructor ‘constexpr std::pair<_T1, _T2>::pair(_U1&&, _U2&&) [with _U1 = ncbi::objects::edit::CFeatGapInfo::EGapIntervalType; _U2 = std::pair<unsigned int, unsigned int>; typename std::enable_if<(std::_PCC<true, _T1, _T2>::_MoveConstructiblePair<_U1, _U2>() && std::_PCC<true, _T1, _T2>::_ImplicitlyMoveConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = ncbi::objects::edit::CFeatGapInfo::EGapIntervalType; _T2 = std::pair<unsigned int, unsigned int>]’,
inlined from ‘void ncbi::objects::edit::CFeatGapInfo::CollectGaps(const ncbi::objects::CSeq_loc&, ncbi::objects::CScope&)’ at /<<PKGBUILDDIR>>/c++/src/objtools/edit/gap_trim.cpp:128:34:
/usr/include/c++/12/bits/stl_pair.h:535:42: warning: ‘gap_start’ may be used uninitialized [-Wmaybe-uninitialized]
535 | : first(std::forward<_U1>(__x)), second(std::forward<_U2>(__y)) { }
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/edit/gap_trim.cpp: In member function ‘void ncbi::objects::edit::CFeatGapInfo::CollectGaps(const ncbi::objects::CSeq_loc&, ncbi::objects::CScope&)’:
/<<PKGBUILDDIR>>/c++/src/objtools/edit/gap_trim.cpp:109:21: note: ‘gap_start’ was declared here
109 | TSeqPos gap_start;
| ^~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:54,
from /<<PKGBUILDDIR>>/c++/include/objtools/edit/feature_propagate.hpp:44,
from /<<PKGBUILDDIR>>/c++/src/objtools/edit/feature_propagate.cpp:48:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_types_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/feat_ci.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:50,
from /<<PKGBUILDDIR>>/c++/src/objtools/edit/text_object_description.cpp:48:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/edit/text_object_description.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/edit/seq_edit.cpp:33:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/edit/seq_edit.cpp:32:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:54:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/edit/text_object_description.cpp:336:15: warning: ‘std::string ncbi::objects::edit::GetTextObjectDescription(const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, const std::string&)’ defined but not used [-Wunused-function]
336 | static string GetTextObjectDescription(const CSeq_feat& seq_feat, CScope& scope, const string& product)
| ^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/eutils/api/esearch.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/objtools/edit/pub_fix.cpp:63:
/<<PKGBUILDDIR>>/c++/include/objtools/eutils/api/eutils.hpp:198:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
198 | auto_ptr<CConn_HttpStream> m_Stream;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/biblio/ArticleId_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/biblio/ArticleId.hpp:44,
from /<<PKGBUILDDIR>>/c++/src/objtools/edit/pub_fix.cpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
2.0+ds/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/edit/feature_propagate.cpp -o feature_propagate.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/edit/text_object_description.cpp -o text_object_description.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/edit/seq_edit.cpp -o seq_edit.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/edit/pub_fix.cpp -o pub_fix.o
/bin/rm -f libxobjedit.so .libxobjedit.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libxobjedit.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC gene_utils.o seq_entry_edit.o promote.o autodef_with_tax.o field_handler.o apply_object.o string_constraint.o seqid_guesser.o dblink_field.o struc_comm_field.o text_desc_field.o gb_block_field.o link_cds_mrna.o cds_fix.o loc_edit.o mail_report.o feattable_edit.o gaps_edit.o source_edit.o rna_edit.o remote_updater.o parse_text_options.o publication_edit.o gap_trim.o external_annots.o feature_propagate.o text_object_description.o seq_edit.o pub_fix.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lxobjutil -ltaxon3 -lvalid -lmlacli -lxlogging -leutils -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjedit.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libxobjedit.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libxobjedit.so
/bin/ln -f .xobjedit.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.xobjedit.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/edit'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/edit'
cd algo/blast/unit_tests/seqdb_reader/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=seqdb_lmdb_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/seqdb_reader TMPL=seqdb_lmdb_unit_test -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_lmdb_unit_test.cpp:38:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=seqdb_lmdb_unit_test /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_lmdb_unit_test.cpp -o seqdb_lmdb_unit_test.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie seqdb_lmdb_unit_test.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -ltest_boost -lseqdb -lwritedb -lxobjutil -lblastdb -lxobjread -lvariation -lsubmit -lxlogging -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -lm -lpthread -o seqdb_lmdb_unit_test
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_lmdb_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f seqdb_lmdb_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin/seqdb_lmdb_unit_test
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader'
cd algo/blast/unit_tests/seqdb_reader/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=seqdb_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/seqdb_reader TMPL=seqdb_unit_test -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:51:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_types_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/feat_ci.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:50,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:42:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:34:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:54:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /usr/include/c++/12/bits/stl_algo.h:60,
from /usr/include/c++/12/algorithm:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:180:
/usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Distance = int; _Tp = long long int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1908 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1802 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:1844:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1844 | __final_insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1844:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator<long long int>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<long long int>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘void seqdb::IntersectionNegGiList::test_method()’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:2419:17:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘void seqdb::IntersectionNegGiList::test_method()’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:2430:17:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from ‘void seqdb::CSeqDBFileGiList_GetGis::test_method()’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:1667:9:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1940:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1940 | std::__final_insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from ‘void seqdb::CSeqDBFileGiList_GetGis::test_method()’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:1682:9:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1940:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1940 | std::__final_insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {ncbi::CSeqDBGiList::SGiOid}; _Tp = ncbi::CSeqDBGiList::SGiOid; _Alloc = std::allocator<ncbi::CSeqDBGiList::SGiOid>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<ncbi::CSeqDBGiList::SGiOid>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ncbi::CSeqDBGiList::SGiOid}; _Tp = ncbi::CSeqDBGiList::SGiOid; _Alloc = std::allocator<ncbi::CSeqDBGiList::SGiOid>]’:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::CSeqDBGiList::SGiOid*, std::vector<ncbi::CSeqDBGiList::SGiOid> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘void seqdb::IntersectionGiList::test_method()’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:2378:17:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘void seqdb::IntersectionGiList::test_method()’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:2389:17:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from ‘void seqdb::TwoGiListsOneVolume::test_method()’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:1726:9:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1940:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1940 | std::__final_insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from ‘void seqdb::TwoGiListsOneVolume::test_method()’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:1727:9:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1940:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1940 | std::__final_insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/map:60,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:45:
/usr/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const long long int&>, std::tuple<>}; _Key = long long int; _Val = std::pair<const long long int, int>; _KeyOfValue = std::_Select1st<std::pair<const long long int, int> >; _Compare = std::less<long long int>; _Alloc = std::allocator<std::pair<const long long int, int> >]’:
/usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree<long long int, std::pair<const long long int, int>, std::_Select1st<std::pair<const long long int, int> >, std::less<long long int>, std::allocator<std::pair<const long long int, int> > >::const_iterator’ changed in GCC 7.1
2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const long long int&>, std::tuple<>}; _Key = long long int; _Val = std::pair<const long long int, std::set<int> >; _KeyOfValue = std::_Select1st<std::pair<const long long int, std::set<int> > >; _Compare = std::less<long long int>; _Alloc = std::allocator<std::pair<const long long int, std::set<int> > >]’:
/usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree<long long int, std::pair<const long long int, std::set<int> >, std::_Select1st<std::pair<const long long int, std::set<int> > >, std::less<long long int>, std::allocator<std::pair<const long long int, std::set<int> > > >::const_iterator’ changed in GCC 7.1
In file included from /usr/include/c++/12/map:61:
/usr/include/c++/12/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long int; _Tp = std::set<int>; _Compare = std::less<long long int>; _Alloc = std::allocator<std::pair<const long long int, std::set<int> > >]’:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<long long int, std::pair<const long long int, std::set<int> >, std::_Select1st<std::pair<const long long int, std::set<int> > >, std::less<long long int>, std::allocator<std::pair<const long long int, std::set<int> > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long int; _Tp = int; _Compare = std::less<long long int>; _Alloc = std::allocator<std::pair<const long long int, int> >]’,
inlined from ‘void seqdb::GetTaxIDs_gi_to_taxid::test_method()’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:1760:5:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<long long int, std::pair<const long long int, int>, std::_Select1st<std::pair<const long long int, int> >, std::less<long long int>, std::allocator<std::pair<const long long int, int> > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long int; _Tp = int; _Compare = std::less<long long int>; _Alloc = std::allocator<std::pair<const long long int, int> >]’,
inlined from ‘void seqdb::GetTaxIDs_gi_to_taxid::test_method()’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:1764:5:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<long long int, std::pair<const long long int, int>, std::_Select1st<std::pair<const long long int, int> >, std::less<long long int>, std::allocator<std::pair<const long long int, int> > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long int; _Tp = int; _Compare = std::less<long long int>; _Alloc = std::allocator<std::pair<const long long int, int> >]’,
inlined from ‘void seqdb::GetTaxIDs_gi_to_taxid::test_method()’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:1765:5:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<long long int, std::pair<const long long int, int>, std::_Select1st<std::pair<const long long int, int> >, std::less<long long int>, std::allocator<std::pair<const long long int, int> > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long int; _Tp = int; _Compare = std::less<long long int>; _Alloc = std::allocator<std::pair<const long long int, int> >]’,
inlined from ‘void seqdb::GetTaxIDs_gi_to_taxid::test_method()’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:1769:5:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<long long int, std::pair<const long long int, int>, std::_Select1st<std::pair<const long long int, int> >, std::less<long long int>, std::allocator<std::pair<const long long int, int> > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long int; _Tp = int; _Compare = std::less<long long int>; _Alloc = std::allocator<std::pair<const long long int, int> >]’,
inlined from ‘void seqdb::GetTaxIDs_gi_to_taxid::test_method()’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:1770:5:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<long long int, std::pair<const long long int, int>, std::_Select1st<std::pair<const long long int, int> >, std::less<long long int>, std::allocator<std::pair<const long long int, int> > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long int; _Tp = int; _Compare = std::less<long long int>; _Alloc = std::allocator<std::pair<const long long int, int> >]’,
inlined from ‘void seqdb::GetTaxIDs_gi_to_taxid::test_method()’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:1771:5:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<long long int, std::pair<const long long int, int>, std::_Select1st<std::pair<const long long int, int> >, std::less<long long int>, std::allocator<std::pair<const long long int, int> > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long int; _Tp = std::set<int>; _Compare = std::less<long long int>; _Alloc = std::allocator<std::pair<const long long int, std::set<int> > >]’,
inlined from ‘void seqdb::GetLeafTaxIDs_gi_to_taxid_set::test_method()’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:1823:5:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<long long int, std::pair<const long long int, std::set<int> >, std::_Select1st<std::pair<const long long int, std::set<int> > >, std::less<long long int>, std::allocator<std::pair<const long long int, std::set<int> > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long int; _Tp = std::set<int>; _Compare = std::less<long long int>; _Alloc = std::allocator<std::pair<const long long int, std::set<int> > >]’,
inlined from ‘void seqdb::GetLeafTaxIDs_gi_to_taxid_set::test_method()’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:1823:5:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<long long int, std::pair<const long long int, std::set<int> >, std::_Select1st<std::pair<const long long int, std::set<int> > >, std::less<long long int>, std::allocator<std::pair<const long long int, std::set<int> > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long int; _Tp = std::set<int>; _Compare = std::less<long long int>; _Alloc = std::allocator<std::pair<const long long int, std::set<int> > >]’,
inlined from ‘void seqdb::GetLeafTaxIDs_gi_to_taxid_set::test_method()’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:1833:5:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<long long int, std::pair<const long long int, std::set<int> >, std::_Select1st<std::pair<const long long int, std::set<int> > >, std::less<long long int>, std::allocator<std::pair<const long long int, std::set<int> > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long int; _Tp = std::set<int>; _Compare = std::less<long long int>; _Alloc = std::allocator<std::pair<const long long int, std::set<int> > >]’,
inlined from ‘void seqdb::GetLeafTaxIDs_gi_to_taxid_set::test_method()’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:1842:5:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<long long int, std::pair<const long long int, std::set<int> >, std::_Select1st<std::pair<const long long int, std::set<int> > >, std::less<long long int>, std::allocator<std::pair<const long long int, std::set<int> > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long int; _Tp = std::set<int>; _Compare = std::less<long long int>; _Alloc = std::allocator<std::pair<const long long int, std::set<int> > >]’,
inlined from ‘void seqdb::GetLeafTaxIDs_gi_to_taxid_set::test_method()’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:1844:5:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<long long int, std::pair<const long long int, std::set<int> >, std::_Select1st<std::pair<const long long int, std::set<int> > >, std::less<long long int>, std::allocator<std::pair<const long long int, std::set<int> > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long int; _Tp = std::set<int>; _Compare = std::less<long long int>; _Alloc = std::allocator<std::pair<const long long int, std::set<int> > >]’,
inlined from ‘void seqdb::GetLeafTaxIDs_gi_to_taxid_set::test_method()’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:1844:5:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<long long int, std::pair<const long long int, std::set<int> >, std::_Select1st<std::pair<const long long int, std::set<int> > >, std::less<long long int>, std::allocator<std::pair<const long long int, std::set<int> > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long int; _Tp = std::set<int>; _Compare = std::less<long long int>; _Alloc = std::allocator<std::pair<const long long int, std::set<int> > >]’,
inlined from ‘void seqdb::GetLeafTaxIDs_gi_to_taxid_set::test_method()’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:1848:5:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<long long int, std::pair<const long long int, std::set<int> >, std::_Select1st<std::pair<const long long int, std::set<int> > >, std::less<long long int>, std::allocator<std::pair<const long long int, std::set<int> > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long int; _Tp = std::set<int>; _Compare = std::less<long long int>; _Alloc = std::allocator<std::pair<const long long int, std::set<int> > >]’,
inlined from ‘void seqdb::GetLeafTaxIDs_gi_to_taxid_set::test_method()’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:1848:5:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<long long int, std::pair<const long long int, std::set<int> >, std::_Select1st<std::pair<const long long int, std::set<int> > >, std::less<long long int>, std::allocator<std::pair<const long long int, std::set<int> > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=seqdb_unit_test /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp -o seqdb_unit_test.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie seqdb_unit_test.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -ltest_boost -lseqdb -lwritedb -lxobjutil -lblastdb -lxobjread -lvariation -lsubmit -lxlogging -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -lm -lpthread -o seqdb_unit_test
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f seqdb_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin/seqdb_unit_test
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader'
cd app/dustmasker/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=dustmasker LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/dustmasker'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/dustmasker'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/dustmasker'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/dustmasker'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/dustmasker'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/app/dustmasker TMPL=dustmasker -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/app/dustmasker/dust_mask_app.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/app/dustmasker/dust_mask_app.cpp:35:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/app/dustmasker/dust_mask_app.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/app/dustmasker/main.cpp:34:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/dustmask/symdust.hpp:42,
from /<<PKGBUILDDIR>>/c++/src/app/dustmasker/dust_mask_app.hpp:40:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiargs.hpp:84,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp_api.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:42:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/dustmask/symdust.hpp:159:14: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
159 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq );
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/dustmask/symdust.hpp:168:14: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
168 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/dustmask/symdust.hpp:42,
from /<<PKGBUILDDIR>>/c++/src/app/dustmasker/dust_mask_app.hpp:40:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiargs.hpp:84,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp_api.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:42:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/dustmask/symdust.hpp:159:14: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
159 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq );
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/dustmask/symdust.hpp:168:14: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
168 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/mod_reader.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/app/dustmasker/dust_mask_app.cpp:41:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/app/dustmasker/dust_mask_app.cpp:52:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/app/dustmasker/dust_mask_app.cpp:55:
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/app/dustmasker/dust_mask_app.cpp:58:
/<<PKGBUILDDIR>>/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: ‘ncbi::objects::CFastaReader::fAllSeqIds’ is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations]
94 | objects::CFastaReader::fAllSeqIds |
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here
92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note)
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: ‘ncbi::objects::CFastaReader::fAllSeqIds’ is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations]
94 | objects::CFastaReader::fAllSeqIds |
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here
92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note)
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/app/dustmasker/dust_mask_app.cpp: In member function ‘virtual void ncbi::CDustMaskApplication::Init()’:
/<<PKGBUILDDIR>>/c++/src/app/dustmasker/dust_mask_app.cpp:83:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
83 | auto_ptr< CArgDescriptions > arg_desc( new CArgDescriptions );
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/app/dustmasker/dust_mask_app.cpp: At global scope:
/<<PKGBUILDDIR>>/c++/src/app/dustmasker/dust_mask_app.cpp:221:6: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
221 | std::auto_ptr< CSymDustMasker::TMaskList >
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/app/dustmasker/dust_mask_app.cpp: In function ‘std::auto_ptr<std::vector<std::pair<unsigned int, unsigned int> > > ncbi::GetDustMasks_SkipNs(objects::CSeqVector&, Uint4, Uint4, Uint4)’:
/<<PKGBUILDDIR>>/c++/src/app/dustmasker/dust_mask_app.cpp:230:10: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
230 | std::auto_ptr< CSymDustMasker::TMaskList > rv(new CSymDustMasker::TMaskList);
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/app/dustmasker/dust_mask_app.cpp:239:22: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
239 | std::auto_ptr< CSymDustMasker::TMaskList > s_mask = duster(seq, seq_start, itr->first -1);
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/app/dustmasker/dust_mask_app.cpp:254:22: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
254 | std::auto_ptr< CSymDustMasker::TMaskList > s_mask = duster(seq, seq_start, seq.size() -1);
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/app/dustmasker/dust_mask_app.cpp: In member function ‘virtual int ncbi::CDustMaskApplication::Run()’:
/<<PKGBUILDDIR>>/c++/src/app/dustmasker/dust_mask_app.cpp:282:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
282 | auto_ptr<CMaskWriter> writer(x_GetWriter());
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/app/dustmasker/dust_mask_app.cpp:301:18: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
301 | std::auto_ptr< duster_type::TMaskList > res = GetDustMasks_SkipNs(data, level, window, linker);
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/dustmasker'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=dustmasker /<<PKGBUILDDIR>>/c++/src/app/dustmasker/main.cpp -o main.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=dustmasker /<<PKGBUILDDIR>>/c++/src/app/dustmasker/dust_mask_app.cpp -o dust_mask_app.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie main.o dust_mask_app.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lxalgodustmask -lseqmasks_io -lxobjread -lvariation -lsubmit -lxlogging -lxobjutil -lseqdb -lblastdb -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o dustmasker
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f dustmasker /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f dustmasker /<<PKGBUILDDIR>>/c++/BUILD/bin/dustmasker
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/dustmasker'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/dustmasker'
cd objtools/blast/gene_info_reader/demo/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=gene_info_reader LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/gene_info_reader/demo'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/gene_info_reader/demo'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/gene_info_reader/demo'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/gene_info_reader/demo'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/gene_info_reader/demo'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objtools/blast/gene_info_reader/demo TMPL=gene_info_reader -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp:38:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp:40:
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
108 | auto_ptr<CMemoryFile> m_memGi2GeneFile;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiargs.hpp:84,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp_api.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:42:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
111 | auto_ptr<CMemoryFile> m_memGene2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
114 | auto_ptr<CMemoryFile> m_memGi2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
117 | auto_ptr<CMemoryFile> m_memGene2GiFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp: In member function ‘virtual void CReadFilesApp::Init()’:
/<<PKGBUILDDIR>>/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp:121:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
121 | auto_ptr<CArgDescriptions> arg_desc(new CArgDescriptions);
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/gene_info_reader/demo'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=gene_info_reader /<<PKGBUILDDIR>>/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp -o gene_info_reader_app.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie gene_info_reader_app.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lgene_info -lxobjutil -lseqdb -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -llmdb -lpthread -lm -lpthread -o gene_info_reader
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f gene_info_reader /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f gene_info_reader /<<PKGBUILDDIR>>/c++/BUILD/bin/gene_info_reader
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/gene_info_reader/demo'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/gene_info_reader/demo'
cd objtools/blast/seqdb_reader/demo/ && NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=seqdb_demo LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_reader/demo'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_reader/demo'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_reader/demo'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_reader/demo'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_reader/demo'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/demo TMPL=seqdb_demo -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_reader/demo'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=seqdb_demo /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp -o seqdb_demo.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie seqdb_demo.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lseqdb -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o seqdb_demo
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_demo /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f seqdb_demo /<<PKGBUILDDIR>>/c++/BUILD/bin/seqdb_demo
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_reader/demo'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_reader/demo'
cd objtools/blast/seqdb_reader/test/ && NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=seqdb_perf LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_reader/test'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_reader/test'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_reader/test'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_reader/test'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_reader/test'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/test TMPL=seqdb_perf -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:35:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp: In member function ‘void CSeqDBPerfApp::x_UpdateMemoryUsage(int)’:
/<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:114:23: warning: ‘bool ncbi::GetMemoryUsage(size_t*, size_t*, size_t*)’ is deprecated [-Wdeprecated-declarations]
114 | if (GetMemoryUsage(&mu.total, &mu.resident, &mu.shared)) {
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:36:
/<<PKGBUILDDIR>>/c++/include/corelib/ncbi_system.hpp:511:13: note: declared here
511 | extern bool GetMemoryUsage(size_t* total, size_t* resident, size_t* shared);
| ^~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp: In member function ‘int CSeqDBPerfApp::x_ScanDatabase()’:
/<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:153:31: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘int’} and ‘std::vector<int>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
153 | for (ssize_t i = 0; i < oids2iterate.size(); i++) {
| ~~^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp: In member function ‘virtual void CSeqDBPerfApp::Init()’:
/<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:285:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
285 | auto_ptr<CArgDescriptions> arg_desc(new CArgDescriptions);
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiargs.hpp:84,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp_api.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:42:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_reader/test'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=seqdb_perf /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp -o seqdb_perf.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie seqdb_perf.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lseqdb -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -llmdb -lpthread -lm -lpthread -o seqdb_perf
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_perf /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f seqdb_perf /<<PKGBUILDDIR>>/c++/BUILD/bin/seqdb_perf
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_reader/test'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_reader/test'
cd objtools/blast/seqdb_writer/unit_test/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=writedb_lmdb_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/unit_test TMPL=writedb_lmdb_unit_test -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_lmdb_unit_test.cpp:36:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=writedb_lmdb_unit_test /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_lmdb_unit_test.cpp -o writedb_lmdb_unit_test.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie writedb_lmdb_unit_test.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -ltest_boost -lwritedb -lseqdb -lxobjread -lvariation -lsubmit -lxlogging -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o writedb_lmdb_unit_test
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f writedb_lmdb_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f writedb_lmdb_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin/writedb_lmdb_unit_test
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test'
cd objtools/blast/seqdb_writer/unit_test/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=writedb_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/unit_test TMPL=writedb_unit_test -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/unit_test/criteria_unit_test.cpp:37:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:46:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:37:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41,
from /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:35:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/mod_reader.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:39:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp: In function ‘ncbi::CRef<ncbi::objects::CScope> s_GetScope()’:
/<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:558:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
558 | auto_ptr<CObjectIStream> ois
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp: In member function ‘void writedb::CBuildDatabase_WGS_gap::test_method()’:
/<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:2825:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
2825 | auto_ptr<CObjectIStream> ois
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator<long long int>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<long long int>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘void ncbi::CBinaryListBuilder::AppendId(const Int8&)’ at /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_writer/writedb.hpp:478:24,
inlined from ‘void writedb::BinaryListBuilder::test_method()’ at /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:1610:26:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘void ncbi::CBinaryListBuilder::AppendId(const Int8&)’ at /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_writer/writedb.hpp:478:24,
inlined from ‘void writedb::BinaryListBuilder::test_method()’ at /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:1611:26:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=writedb_unit_test /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp -o writedb_unit_test.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=writedb_unit_test /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/unit_test/criteria_unit_test.cpp -o criteria_unit_test.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie writedb_unit_test.o criteria_unit_test.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -ltest_boost -lwritedb -lseqdb -lxobjread -lvariation -lsubmit -lxlogging -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o writedb_unit_test
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f writedb_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f writedb_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin/writedb_unit_test
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test'
cd algo/winmask/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xalgowinmask UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/winmask'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/winmask'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/winmask'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/winmask'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/winmask'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/winmask TMPL=xalgowinmask -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_version.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_istat.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_score.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_score_mean_glob.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp:34:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
In file included from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_version.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_istat.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_score.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_score_min.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/algo/winmask/seq_masker_score_min.cpp:37:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_version.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_istat.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_score.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_score_mean.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/algo/winmask/seq_masker_score_mean.cpp:35:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_version.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_istat.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_score.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_score_mean.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/algo/winmask/seq_masker.cpp:41:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_window.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_istat.hpp:41:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_istat.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_window.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/algo/winmask/seq_masker_score_min.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_window.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_window.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/algo/winmask/seq_masker.cpp:37:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_window.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_window.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/algo/winmask/seq_masker_score_mean.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_window.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
367 | std::auto_ptr< CComponentVersionInfo > fmt_version;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
367 | std::auto_ptr< CComponentVersionInfo > fmt_version;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
367 | std::auto_ptr< CComponentVersionInfo > fmt_version;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
367 | std::auto_ptr< CComponentVersionInfo > fmt_version;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/winmask/seq_masker.cpp: In member function ‘ncbi::CSeqMasker::TMaskList* ncbi::CSeqMasker::DoMask(const ncbi::objects::CSeqVector&, ncbi::TSeqPos, ncbi::TSeqPos) const’:
/<<PKGBUILDDIR>>/c++/src/algo/winmask/seq_masker.cpp:166:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
166 | auto_ptr<TMaskList> mask(new TMaskList);
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/winmask/seq_masker.cpp:171:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
171 | auto_ptr<CSeqMaskerWindow> window_ptr
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/winmask/seq_masker.cpp: In member function ‘double ncbi::CSeqMasker::MergeAvg(std::__cxx11::list<mitem>::iterator, const std::__cxx11::list<mitem>::iterator&, Uint4) const’:
/<<PKGBUILDDIR>>/c++/src/algo/winmask/seq_masker.cpp:404:8: note: parameter passing for argument of type ‘std::__cxx11::list<ncbi::CSeqMasker::mitem>::iterator’ changed in GCC 7.1
404 | double CSeqMasker::MergeAvg( TMList::iterator mi,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/winmask/seq_masker.cpp: In member function ‘void ncbi::CSeqMasker::Merge(TMList&, std::__cxx11::list<mitem>::iterator, TMList&, std::__cxx11::list<mitem>::iterator&) const’:
/<<PKGBUILDDIR>>/c++/src/algo/winmask/seq_masker.cpp:418:6: note: parameter passing for argument of type ‘std::__cxx11::list<ncbi::CSeqMasker::mitem>::iterator’ changed in GCC 7.1
418 | void CSeqMasker::Merge( TMList & m, TMList::iterator mi,
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/winmask/seq_masker.cpp: In member function ‘ncbi::CSeqMasker::TMaskList* ncbi::CSeqMasker::DoMask(const ncbi::objects::CSeqVector&, ncbi::TSeqPos, ncbi::TSeqPos) const’:
/<<PKGBUILDDIR>>/c++/src/algo/winmask/seq_masker.cpp:305:32: note: parameter passing for argument of type ‘std::__cxx11::list<ncbi::CSeqMasker::mitem>::iterator’ changed in GCC 7.1
305 | lavg = MergeAvg( k, tmp, unit_size );
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/winmask/seq_masker.cpp:311:32: note: parameter passing for argument of type ‘std::__cxx11::list<ncbi::CSeqMasker::mitem>::iterator’ changed in GCC 7.1
311 | ravg = MergeAvg( ii, j, unit_size );
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/winmask/seq_masker.cpp:328:42: note: parameter passing for argument of type ‘std::__cxx11::list<ncbi::CSeqMasker::mitem>::iterator’ changed in GCC 7.1
328 | k->avg = MergeAvg( k, --j, unit_size );
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/winmask/seq_masker.cpp:354:34: note: parameter passing for argument of type ‘std::__cxx11::list<ncbi::CSeqMasker::mitem>::iterator’ changed in GCC 7.1
354 | k->avg = MergeAvg( k, --j, unit_size );
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/winmask/seq_masker.cpp:386:34: note: parameter passing for argument of type ‘std::__cxx11::list<ncbi::CSeqMasker::mitem>::iterator’ changed in GCC 7.1
386 | k->avg = MergeAvg( k, j, unit_size );
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/winmask'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/winmask/seq_masker.cpp -o seq_masker.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/winmask/seq_masker_score_mean.cpp -o seq_masker_score_mean.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp -o seq_masker_score_mean_glob.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/winmask/seq_masker_score_min.cpp -o seq_masker_score_min.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/winmask/seq_masker_util.cpp -o seq_masker_util.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/winmask/seq_masker_window.cpp -o seq_masker_window.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/ncbi-blast+-2.12.0+In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_window.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_window_ambig.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/algo/winmask/seq_masker_window_ambig.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_window.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_window.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_window_pattern.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/algo/winmask/seq_masker_window_pattern.cpp:37:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_util.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/algo/winmask/seq_masker_window_pattern.cpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_window.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_window_pattern.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_window_pattern_ambig.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp:37:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_util.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_window.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/algo/winmask/seq_masker_window.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_window.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/winmask/seq_masker_window_ambig.cpp -o seq_masker_window_ambig.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/winmask/seq_masker_window_pattern.cpp -o seq_masker_window_pattern.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp -o seq_masker_window_pattern_ambig.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/winmask/seq_masker_ostat_factory.cpp -o seq_masker_ostat_factory.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/winmask/seq_masker_ostat.cpp -o seq_masker_ostat.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp -o seq_masker_ostat_ascii.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOIn file included from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_version.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_ostat.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_ostat_ascii.hpp:41,
from /<<PKGBUILDDIR>>/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp:37:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
In file included from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_version.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_ostat.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_ostat_ascii.hpp:41,
from /<<PKGBUILDDIR>>/c++/src/algo/winmask/seq_masker_ostat_factory.cpp:36:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
In file included from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_version.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_istat.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_istat_ascii.hpp:42,
from /<<PKGBUILDDIR>>/c++/src/algo/winmask/seq_masker_istat_ascii.cpp:35:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_version.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_ostat.hpp:42,
from /<<PKGBUILDDIR>>/c++/src/algo/winmask/seq_masker_ostat.cpp:35:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_version.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_ostat.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_ostat_bin.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/algo/winmask/seq_masker_ostat_bin.cpp:35:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_window.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_istat.hpp:41:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_istat_ascii.hpp:39:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_version.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_istat.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_istat_ascii.hpp:42,
from /<<PKGBUILDDIR>>/c++/src/algo/winmask/seq_masker_istat_factory.cpp:36:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
367 | std::auto_ptr< CComponentVersionInfo > fmt_version;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
URCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/winmask/seq_masker_istat_ascii.cpp -o seq_masker_istat_ascii.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/winmask/seq_masker_uset_simple.cpp -o seq_masker_uset_simple.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/winmask/seq_masker_istat_factory.cpp -o seq_masker_istat_factory.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/winmask/seq_masker_ostat_bin.cpp -o seq_masker_ostat_bin.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/winmask/seq_masker_uset_array.cpp -o seq_masker_uset_array.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/winmask/seq_masker_istat_bin.cpp -o seq_masker_istat_bin.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /build/ncIn file included from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_version.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_ostat.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_ostat_opt.hpp:40,
from /<<PKGBUILDDIR>>/c++/src/algo/winmask/seq_masker_ostat_opt.cpp:42:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_version.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_ostat.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_ostat_opt.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_ostat_opt_ascii.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpp:35:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_version.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_istat.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_istat_bin.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/algo/winmask/seq_masker_istat_bin.cpp:37:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_version.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_istat.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_istat_oascii.hpp:40,
from /<<PKGBUILDDIR>>/c++/src/algo/winmask/seq_masker_istat_oascii.cpp:38:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_window.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_istat.hpp:41:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_istat_factory.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/algo/winmask/seq_masker_istat_factory.cpp:35:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_window.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_istat.hpp:41:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbitime.hpp:65,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_system.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbifile.hpp:53,
from /<<PKGBUILDDIR>>/c++/src/algo/winmask/seq_masker_istat_bin.cpp:35:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
367 | std::auto_ptr< CComponentVersionInfo > fmt_version;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
367 | std::auto_ptr< CComponentVersionInfo > fmt_version;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_version.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_ostat.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_ostat_opt.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_ostat_opt_bin.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp:35:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_version.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_istat.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_istat_obinary.hpp:40,
from /<<PKGBUILDDIR>>/c++/src/algo/winmask/seq_masker_istat_obinary.cpp:38:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_window.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_istat.hpp:41:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_istat_oascii.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
367 | std::auto_ptr< CComponentVersionInfo > fmt_version;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_version.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_istat.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_cache_boost.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/algo/winmask/seq_masker_cache_boost.cpp:35:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
bi-blast+-iztKfv/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_ostat_opt.cpp -o seq_masker_ostat_opt.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpp -o seq_masker_ostat_opt_ascii.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/winmask/seq_masker_uset_hash.cpp -o seq_masker_uset_hash.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/winmask/seq_masker_istat_oascii.cpp -o seq_masker_istat_oascii.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp -o seq_masker_ostat_opt_bin.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/winmask/seq_masker_istat_obinary.cpp -o seq_masker_istat_obinary.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/winmask/seq_masker_cache_boost.cpp -o seq_masker_cache_boost.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -OIn file included from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_version.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_ostat.hpp:42,
from /<<PKGBUILDDIR>>/c++/src/algo/winmask/win_mask_counts_converter.cpp:40:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_window.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_istat.hpp:41:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_istat_obinary.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
367 | std::auto_ptr< CComponentVersionInfo > fmt_version;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_window.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_istat.hpp:41:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_cache_boost.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
367 | std::auto_ptr< CComponentVersionInfo > fmt_version;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_window.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_istat.hpp:41,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/win_mask_counts_converter.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/algo/winmask/win_mask_counts_converter.cpp:42:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_util.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/algo/winmask/win_mask_counts_converter.cpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
367 | std::auto_ptr< CComponentVersionInfo > fmt_version;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/algo/blast/dbindex/dbindex_factory.cpp:42:
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_version.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_ostat.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/win_mask_gen_counts.hpp:50,
from /<<PKGBUILDDIR>>/c++/src/algo/winmask/win_mask_gen_counts.cpp:53:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/algo/winmask/win_mask_dup_table.cpp:43:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbictype.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistre.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/algo/winmask/win_mask_dup_table.cpp:39:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/algo/winmask/win_mask_dup_table.cpp:44:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/algo/winmask/win_mask_gen_counts.cpp:45:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/seq/Bioseq_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/seq/Bioseq.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/algo/winmask/win_mask_gen_counts.cpp:39:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/winmask/win_mask_util.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/win_mask_config.hpp:46,
from /<<PKGBUILDDIR>>/c++/src/algo/winmask/win_mask_config.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbictype.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistre.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_stack.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/src/algo/winmask/win_mask_config.cpp:34:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/algo/winmask/win_mask_dup_table.cpp:48:
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/winmask/win_mask_dup_table.hpp:46,
from /<<PKGBUILDDIR>>/c++/src/algo/winmask/win_mask_dup_table.cpp:50:
/<<PKGBUILDDIR>>/c++/include/algo/winmask/win_mask_util.hpp:188:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
188 | auto_ptr< CNcbiIstream > m_InputFile; // input file
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/winmask/win_mask_util.hpp:189:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
189 | auto_ptr< CMaskReader > m_Reader; // reader used for fasta and bdb formats
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_types_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/feat_ci.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:50,
from /<<PKGBUILDDIR>>/c++/src/algo/winmask/win_mask_util.cpp:37:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/algo/winmask/win_mask_gen_counts.cpp:46:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/win_mask_util.hpp:40:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:54:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/winmask/win_mask_util.hpp:188:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
188 | auto_ptr< CNcbiIstream > m_InputFile; // input file
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/winmask/win_mask_util.hpp:189:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
189 | auto_ptr< CMaskReader > m_Reader; // reader used for fasta and bdb formats
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/algo/winmask/win_mask_util.cpp:38:
/<<PKGBUILDDIR>>/c++/include/algo/winmask/win_mask_util.hpp:188:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
188 | auto_ptr< CNcbiIstream > m_InputFile; // input file
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/winmask/win_mask_util.hpp:189:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
189 | auto_ptr< CMaskReader > m_Reader; // reader used for fasta and bdb formats
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/mod_reader.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/algo/winmask/win_mask_util.cpp:40:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/mod_reader.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/win_mask_gen_counts.hpp:47:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/mod_reader.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/algo/winmask/win_mask_config.cpp:38:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: ‘ncbi::objects::CFastaReader::fAllSeqIds’ is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations]
94 | objects::CFastaReader::fAllSeqIds |
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: ‘ncbi::objects::CFastaReader::fAllSeqIds’ is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations]
94 | objects::CFastaReader::fAllSeqIds |
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here
92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note)
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here
92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note)
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: ‘ncbi::objects::CFastaReader::fAllSeqIds’ is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations]
94 | objects::CFastaReader::fAllSeqIds |
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: ‘ncbi::objects::CFastaReader::fAllSeqIds’ is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations]
94 | objects::CFastaReader::fAllSeqIds |
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here
92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note)
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here
92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note)
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/winmask/win_mask_util.cpp: In member function ‘virtual bool ncbi::CWinMaskUtil::CIdSet_TextMatch::find(const ncbi::objects::CBioseq_Handle&) const’:
/<<PKGBUILDDIR>>/c++/src/algo/winmask/win_mask_util.cpp:130:39: warning: ‘std::string ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq_Handle&, TGetTitleFlags)’ is deprecated [-Wdeprecated-declarations]
130 | string id_str = sequence::GetTitle( bsh );
| ~~~~~~~~~~~~~~~~~~^~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:289:8: note: declared here
289 | string GetTitle(const CBioseq_Handle& hnd, TGetTitleFlags flags = 0);
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: ‘ncbi::objects::CFastaReader::fAllSeqIds’ is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations]
94 | objects::CFastaReader::fAllSeqIds |
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here
92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note)
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: ‘ncbi::objects::CFastaReader::fAllSeqIds’ is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations]
94 | objects::CFastaReader::fAllSeqIds |
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here
92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note)
| ^~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/winmask/win_mask_gen_counts.hpp:51:
/<<PKGBUILDDIR>>/c++/include/algo/winmask/win_mask_util.hpp:188:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
188 | auto_ptr< CNcbiIstream > m_InputFile; // input file
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/winmask/win_mask_util.hpp:189:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
189 | auto_ptr< CMaskReader > m_Reader; // reader used for fasta and bdb formats
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/winmask/win_mask_dup_table.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/winmask/win_mask_gen_counts.cpp:54:
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/algo/winmask/win_mask_config.cpp:45:
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_version.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_istat.hpp:42,
from /<<PKGBUILDDIR>>/c++/src/algo/winmask/seq_masker_istat.cpp:32:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_window.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_istat.hpp:41:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_istat.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
367 | std::auto_ptr< CComponentVersionInfo > fmt_version;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/winmask/win_mask_counts_converter.cpp -o win_mask_counts_converter.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/winmask/win_mask_dup_table.cpp -o win_mask_dup_table.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/winmask/win_mask_gen_counts.cpp -o win_mask_gen_counts.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/winmask/win_mask_util.cpp -o win_mask_util.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/winmask/win_mask_config.cpp -o win_mask_config.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/winmask/seq_masker_istat.cpp -o seq_masker_istat.o
/bin/rm -f libxalgowinmask.so .libxalgowinmask.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libxalgowinmask.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC seq_masker.o seq_masker_score_mean.o seq_masker_score_mean_glob.o seq_masker_score_min.o seq_masker_util.o seq_masker_window.o seq_masker_window_ambig.o seq_masker_window_pattern.o seq_masker_window_pattern_ambig.o seq_masker_ostat_factory.o seq_masker_ostat.o seq_masker_ostat_ascii.o seq_masker_istat_ascii.o seq_masker_uset_simple.o seq_masker_istat_factory.o seq_masker_ostat_bin.o seq_masker_uset_array.o seq_masker_istat_bin.o seq_masker_ostat_opt.o seq_masker_ostat_opt_ascii.o seq_masker_uset_hash.o seq_masker_istat_oascii.o seq_masker_ostat_opt_bin.o seq_masker_istat_obinary.o seq_masker_cache_boost.o win_mask_counts_converter.o win_mask_dup_table.o win_mask_gen_counts.o win_mask_util.o win_mask_config.o seq_masker_istat.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lseqmasks_io -lxobjread -lxobjutil -lxobjmgr -lseq -lxncbi -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgowinmask.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libxalgowinmask.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libxalgowinmask.so
/bin/ln -f .xalgowinmask.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.xalgowinmask.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/winmask'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/winmask'
cd objtools/cleanup/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=cleanup UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/cleanup'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/cleanup'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/cleanup'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/cleanup'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/cleanup'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objtools/cleanup TMPL=cleanup -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/objtools/cleanup/cleanup_utils.hpp:44,
from /<<PKGBUILDDIR>>/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/seqset/Seq_entry_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/seqset/Seq_entry.hpp:41,
from /<<PKGBUILDDIR>>/c++/src/objtools/cleanup/autogenerated_extended_cleanup.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp:34:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/objtools/cleanup/cleanup_utils.hpp:44,
from /<<PKGBUILDDIR>>/c++/src/objtools/cleanup/autogenerated_cleanup.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/seqset/Seq_entry_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/seqset/Seq_entry.hpp:41,
from /<<PKGBUILDDIR>>/c++/src/objtools/cleanup/autogenerated_cleanup.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/objtools/cleanup/autogenerated_cleanup.cpp:34:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/objtools/cleanup/cleanup_utils.hpp:44,
from /<<PKGBUILDDIR>>/c++/src/objtools/cleanup/cleanup_utils.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/cleanup/cleanup_utils.cpp:34:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:54,
from /<<PKGBUILDDIR>>/c++/src/objtools/cleanup/cleanup_utils.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objtools/cleanup/gene_qual_normalization.cpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/cleanup/gene_qual_normalization.cpp:34:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_types_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/feat_ci.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:50,
from /<<PKGBUILDDIR>>/c++/src/objtools/cleanup/gene_qual_normalization.cpp:40:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/cleanup'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/cleanup/autogenerated_cleanup.cpp -o autogenerated_cleanup.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp -o autogenerated_extended_cleanup.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/cleanup/cleanup.cpp -o cleanup.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/cleanup/cleanup_utils.cpp -o cleanup_utils.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/cleanup/gene_qual_normalization.cpp -o gene_qual_normalization.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/cleanup/cleanup_user_object.cpp -o cleanup_user_object.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/nc/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objtools/cleanup/cleanup.cpp:58:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/cleanup/cleanup.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_types_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/feat_ci.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:50,
from /<<PKGBUILDDIR>>/c++/src/objtools/cleanup/cleanup.cpp:59:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objtools/cleanup/cleanup_user_object.cpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/cleanup/cleanup_user_object.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/cleanup/cleanup.cpp: In static member function ‘static bool ncbi::objects::CCleanup::x_HasShortIntron(const ncbi::objects::CSeq_loc&, size_t)’:
/<<PKGBUILDDIR>>/c++/src/objtools/cleanup/cleanup.cpp:2889:68: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2889 | if (abs((long int)this_start - (long int)prev_end) < min_len) {
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/cleanup/cleanup.cpp: In static member function ‘static bool ncbi::objects::CCleanup::DecodeXMLMarkChanged(std::string&)’:
/<<PKGBUILDDIR>>/c++/src/objtools/cleanup/cleanup.cpp:4167:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
4167 | idx < sizeof(transformations)/sizeof(transformations[0]);
| ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_types_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/feat_ci.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:50,
from /<<PKGBUILDDIR>>/c++/src/objtools/cleanup/cleanup_user_object.cpp:40:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objtools/cleanup/cleanup.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/objtools/cleanup/cleanup_author.cpp:42:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/cleanup/cleanup_author.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/cleanup/cleanup_user_object.cpp: In static member function ‘static bool ncbi::objects::CCleanup::s_AddNumToUserField(ncbi::objects::CUser_field&)’:
/<<PKGBUILDDIR>>/c++/src/objtools/cleanup/cleanup_user_object.cpp:369:53: warning: comparison of integer expressions of different signedness: ‘ncbi::objects::CUser_field_Base::TNum’ {aka ‘int’} and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
369 | if (!field.IsSetNum() || field.GetNum() != field.GetData().GetStrs().size()) {
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/cleanup/cleanup_user_object.cpp:375:53: warning: comparison of integer expressions of different signedness: ‘ncbi::objects::CUser_field_Base::TNum’ {aka ‘int’} and ‘std::vector<int>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
375 | if (!field.IsSetNum() || field.GetNum() != field.GetData().GetInts().size()) {
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/cleanup/cleanup_user_object.cpp:381:53: warning: comparison of integer expressions of different signedness: ‘ncbi::objects::CUser_field_Base::TNum’ {aka ‘int’} and ‘std::vector<double>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
381 | if (!field.IsSetNum() || field.GetNum() != field.GetData().GetReals().size()) {
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/cleanup/cleanup_user_object.cpp:387:53: warning: comparison of integer expressions of different signedness: ‘ncbi::objects::CUser_field_Base::TNum’ {aka ‘int’} and ‘std::vector<std::vector<char>*>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
387 | if (!field.IsSetNum() || field.GetNum() != field.GetData().GetOss().size()) {
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objtools/cleanup/cleanup.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/objtools/cleanup/cleanup_pub.cpp:49:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/cleanup/cleanup_pub.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<long long int>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘static void ncbi::objects::CCleanup::GetPubdescLabels(const ncbi::objects::CPubdesc&, std::vector<long long int>&, std::vector<long long int>&, std::vector<int>&, std::vector<std::__cxx11::basic_string<char> >&, std::vector<std::__cxx11::basic_string<char> >&)’ at /<<PKGBUILDDIR>>/c++/src/objtools/cleanup/cleanup.cpp:3168:28:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘static void ncbi::objects::CCleanup::GetPubdescLabels(const ncbi::objects::CPubdesc&, std::vector<long long int>&, std::vector<long long int>&, std::vector<int>&, std::vector<std::__cxx11::basic_string<char> >&, std::vector<std::__cxx11::basic_string<char> >&)’ at /<<PKGBUILDDIR>>/c++/src/objtools/cleanup/cleanup.cpp:3171:28:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘static void ncbi::objects::CCleanup::GetPubdescLabels(const ncbi::objects::CPubdesc&, std::vector<long long int>&, std::vector<long long int>&, std::vector<int>&, std::vector<std::__cxx11::basic_string<char> >&, std::vector<std::__cxx11::basic_string<char> >&)’ at /<<PKGBUILDDIR>>/c++/src/objtools/cleanup/cleanup.cpp:3192:36:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘static void ncbi::objects::CCleanup::GetPubdescLabels(const ncbi::objects::CPubdesc&, std::vector<long long int>&, std::vector<long long int>&, std::vector<int>&, std::vector<std::__cxx11::basic_string<char> >&, std::vector<std::__cxx11::basic_string<char> >&)’ at /<<PKGBUILDDIR>>/c++/src/objtools/cleanup/cleanup.cpp:3195:36:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const ncbi::objects::CBioseq_Handle&}; _Tp = ncbi::objects::CBioseq_Handle; _Alloc = std::allocator<ncbi::objects::CBioseq_Handle>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<ncbi::objects::CBioseq_Handle>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ncbi::objects::CBioseq_Handle; _Alloc = std::allocator<ncbi::objects::CBioseq_Handle>]’,
inlined from ‘void ncbi::objects::CInfluenzaSet::AddBioseq(ncbi::objects::CBioseq_Handle)’ at /<<PKGBUILDDIR>>/c++/src/objtools/cleanup/cleanup.cpp:4703:24:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CBioseq_Handle*, std::vector<ncbi::objects::CBioseq_Handle> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objtools/cleanup/capitalization_string.hpp:32,
from /<<PKGBUILDDIR>>/c++/src/objtools/cleanup/capitalization_string.cpp:40:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/cleanup/capitalization_string.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/cleanup/capitalization_string.cpp: In function ‘void ncbi::objects::CapitalizeAfterApostrophe(std::string&)’:
/<<PKGBUILDDIR>>/c++/src/objtools/cleanup/capitalization_string.cpp:911:25: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
911 | if (rslt[0] != start)
| ~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/cleanup/capitalization_string.cpp: In function ‘void ncbi::objects::FixAffiliationShortWordsInElement(std::string&)’:
/<<PKGBUILDDIR>>/c++/src/objtools/cleanup/capitalization_string.cpp:950:29: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
950 | if (rslt[0] != start)
| ~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/cleanup/capitalization_string.cpp: In function ‘void ncbi::objects::FixOrdinalNumbers(std::string&)’:
/<<PKGBUILDDIR>>/c++/src/objtools/cleanup/capitalization_string.cpp:977:29: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
977 | if (rslt[0] != start)
| ~~~~~~~~^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_types_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/feat_ci.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/cleanup/fix_feature_id.cpp:32:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/seqfeat/Feat_id_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/seqfeat/Feat_id.hpp:44,
from /<<PKGBUILDDIR>>/c++/src/objtools/cleanup/fix_feature_id.cpp:31:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_types_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/objtools/cleanup/newcleanupp.cpp:42:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_autoinit.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/objtools/cleanup/newcleanupp.cpp:39:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:54,
from /<<PKGBUILDDIR>>/c++/src/objtools/cleanup/newcleanupp.cpp:49:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/cleanup/newcleanupp.cpp: In function ‘typename TMapType::const_iterator ncbi::objects::s_FindInMapAsPrefix(const std::string&, const TMapType&)’:
/<<PKGBUILDDIR>>/c++/src/objtools/cleanup/newcleanupp.cpp:1187:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1187 | auto_ptr<string> temp_str;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/cleanup/newcleanupp.cpp: In member function ‘void ncbi::objects::CNewCleanup_imp::x_RemoveFlankingQuotes(std::string&)’:
/<<PKGBUILDDIR>>/c++/src/objtools/cleanup/newcleanupp.cpp:5849:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
5849 | for( ; first_pos <= last_pos ; ++first_pos, --last_pos ) {
| ~~~~~~~~~~^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/cleanup/newcleanupp.cpp:5863:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
5863 | if( first_pos > last_pos ) {
| ~~~~~~~~~~^~~~~~~~~~
bi-blast+-iztKfv/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/cleanup/cleanup_author.cpp -o cleanup_author.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/cleanup/cleanup_pub.cpp -o cleanup_pub.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/cleanup/newcleanupp.cpp -o newcleanupp.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/cleanup/capitalization_string.cpp -o capitalization_string.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/cleanup/fix_feature_id.cpp -o fix_feature_id.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/cleanup/cleanup_message.cpp -o cleanup_message.o
/bin/rm -f libxcleanup.so .libxcleanup.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libxcleanup.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC autogenerated_cleanup.o autogenerated_extended_cleanup.o cleanup.o cleanup_utils.o gene_qual_normalization.o cleanup_user_object.o cleanup_author.o cleanup_pub.o newcleanupp.o capitalization_string.o fix_feature_id.o cleanup_message.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxobjutil -lvalid -lxregexp -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lpcre
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcleanup.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libxcleanup.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libxcleanup.so
/bin/ln -f .xcleanup.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.xcleanup.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/cleanup'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/cleanup'
cd app/winmasker/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=winmasker LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/winmasker'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/winmasker'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/winmasker'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/winmasker'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/winmasker'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/app/winmasker TMPL=winmasker -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/app/winmasker/win_mask_app.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/app/winmasker/main.cpp:34:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_version.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_istat.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker.hpp:41,
from /<<PKGBUILDDIR>>/c++/src/app/winmasker/win_mask_sdust_masker.hpp:41,
from /<<PKGBUILDDIR>>/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/dustmask/symdust.hpp:42,
from /<<PKGBUILDDIR>>/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/dustmask/symdust.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_version.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_istat.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker.hpp:41,
from /<<PKGBUILDDIR>>/c++/src/app/winmasker/win_mask_app.cpp:54:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/dustmask/symdust.hpp:159:14: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
159 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq );
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/dustmask/symdust.hpp:168:14: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
168 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
367 | std::auto_ptr< CComponentVersionInfo > fmt_version;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/app/winmasker/win_mask_sdust_masker.cpp: In member function ‘ncbi::CSDustMasker::TMaskList* ncbi::CSDustMasker::operator()(const ncbi::objects::CSeqVector&, const TMaskList&)’:
/<<PKGBUILDDIR>>/c++/src/app/winmasker/win_mask_sdust_masker.cpp:103:14: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
103 | std::auto_ptr< TMaskList > result = duster_(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/app/winmasker/win_mask_app.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/app/winmasker/win_mask_app.cpp:63:
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/mod_reader.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/app/winmasker/win_mask_app.cpp:35:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbictype.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistre.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_stack.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/src/app/winmasker/win_mask_app.cpp:34:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/app/winmasker/win_mask_app.cpp:45:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/app/winmasker/win_mask_app.cpp:46:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/app/winmasker/win_mask_app.cpp:52:
/<<PKGBUILDDIR>>/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: ‘ncbi::objects::CFastaReader::fAllSeqIds’ is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations]
94 | objects::CFastaReader::fAllSeqIds |
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here
92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note)
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: ‘ncbi::objects::CFastaReader::fAllSeqIds’ is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations]
94 | objects::CFastaReader::fAllSeqIds |
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here
92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note)
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
367 | std::auto_ptr< CComponentVersionInfo > fmt_version;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/winmask/win_mask_gen_counts.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/app/winmasker/win_mask_app.cpp:55:
/<<PKGBUILDDIR>>/c++/include/algo/winmask/win_mask_util.hpp:188:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
188 | auto_ptr< CNcbiIstream > m_InputFile; // input file
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/winmask/win_mask_util.hpp:189:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
189 | auto_ptr< CMaskReader > m_Reader; // reader used for fasta and bdb formats
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40,
from /<<PKGBUILDDIR>>/c++/src/app/winmasker/win_mask_app.cpp:64:
/<<PKGBUILDDIR>>/c++/include/algo/dustmask/symdust.hpp:159:14: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
159 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq );
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/dustmask/symdust.hpp:168:14: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
168 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/app/winmasker/win_mask_app.cpp: In member function ‘virtual void ncbi::CWinMaskApplication::Init()’:
/<<PKGBUILDDIR>>/c++/src/app/winmasker/win_mask_app.cpp:103:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
103 | auto_ptr< CArgDescriptions > arg_desc( new CArgDescriptions );
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/app/winmasker/win_mask_app.cpp: In member function ‘virtual int ncbi::CWinMaskApplication::Run()’:
/<<PKGBUILDDIR>>/c++/src/app/winmasker/win_mask_app.cpp:252:17: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
252 | auto_ptr< CSeqMasker::TMaskList > mask_info( theMasker( data ) );
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/app/winmasker/win_mask_app.cpp:257:21: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
257 | auto_ptr< CSeqMasker::TMaskList > dust_info(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/winmasker'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=windowmasker /<<PKGBUILDDIR>>/c++/src/app/winmasker/main.cpp -o main.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=windowmasker /<<PKGBUILDDIR>>/c++/src/app/winmasker/win_mask_app.cpp -o win_mask_app.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=windowmasker /<<PKGBUILDDIR>>/c++/src/app/winmasker/win_mask_sdust_masker.cpp -o win_mask_sdust_masker.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie main.o win_mask_app.o win_mask_sdust_masker.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lxalgowinmask -lxalgodustmask -lblast -lcomposition_adjustment -lseqmasks_io -lseqdb -lblastdb -ltables -lxobjread -lvariation -lsubmit -lxlogging -lxobjutil -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o windowmasker
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f windowmasker /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f windowmasker /<<PKGBUILDDIR>>/c++/BUILD/bin/windowmasker
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/winmasker'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/winmasker'
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:85:69: warning: ‘CSeqFormatterConfig’ is deprecated [-Wdeprecated-declarations]
85 | CSeqFormatterConfig config = CSeqFormatterConfig());
| ^
/<<PKGBUILDDIR>>/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here
43 | struct NCBI_DEPRECATED CSeqFormatterConfig {
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:96:85: warning: ‘CSeqFormatterConfig’ is deprecated [-Wdeprecated-declarations]
96 | void DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config = CSeqFormatterConfig());
| ^
/<<PKGBUILDDIR>>/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here
43 | struct NCBI_DEPRECATED CSeqFormatterConfig {
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:85:68: warning: ‘CSeqFormatterConfig’ is deprecated [-Wdeprecated-declarations]
85 | CSeqFormatterConfig config = CSeqFormatterConfig());
| ^
/<<PKGBUILDDIR>>/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here
43 | struct NCBI_DEPRECATED CSeqFormatterConfig {
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:96:84: warning: ‘CSeqFormatterConfig’ is deprecated [-Wdeprecated-declarations]
96 | void DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config = CSeqFormatterConfig());
| ^
/<<PKGBUILDDIR>>/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here
43 | struct NCBI_DEPRECATED CSeqFormatterConfig {
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:49:74: warning: ‘CSeqFormatterConfig’ is deprecated [-Wdeprecated-declarations]
49 | CSeqFormatterConfig config /* = CSeqFormatterConfig() */)
| ^
/<<PKGBUILDDIR>>/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here
43 | struct NCBI_DEPRECATED CSeqFormatterConfig {
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:270:72: warning: ‘CSeqFormatterConfig’ is deprecated [-Wdeprecated-declarations]
270 | void CSeqFormatter::DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config)
| ^
/<<PKGBUILDDIR>>/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here
43 | struct NCBI_DEPRECATED CSeqFormatterConfig {
| ^~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/mod_reader.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/dbindex/dbindex_factory.cpp:55:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/dbindex/dbindex_factory.cpp: In member function ‘std::string ncbi::blastdbindex::CSubjectMap_Factory_Base::extractSeqVector(TSeqData&)’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/dbindex/dbindex_factory.cpp:658:47: warning: ‘std::string ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq_Handle&, TGetTitleFlags)’ is deprecated [-Wdeprecated-declarations]
658 | string idstr = objects::sequence::GetTitle( bsh );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:289:8: note: declared here
289 | string GetTitle(const CBioseq_Handle& hnd, TGetTitleFlags flags = 0);
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/dbindex/dbindex_factory.cpp: In member function ‘void ncbi::blastdbindex::COffsetData_Factory::Save(ncbi::CNcbiOstream&)’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/dbindex/dbindex_factory.cpp:1409:10: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1409 | std::auto_ptr< CNcbiOfstream > stats;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/dbindex/dbindex_factory.cpp: In static member function ‘static void ncbi::blastdbindex::CDbIndex_Factory::do_create_1_2(ncbi::blastdbindex::CSequenceIStream&, const std::string&, ncbi::blastdbindex::CDbIndex::TSeqNum, ncbi::blastdbindex::CDbIndex::TSeqNum, ncbi::blastdbindex::CDbIndex::TSeqNum&, ncbi::blastdbindex::CDbIndex::TSeqNum&, const ncbi::blastdbindex::CDbIndex::SOptions&)’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/dbindex/dbindex_factory.cpp:1665:10: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1665 | std::auto_ptr< COffsetList::CDataPool > pool(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /usr/include/c++/12/map:60,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:45:
/usr/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const long long int&>, std::tuple<>}; _Key = long long int; _Val = std::pair<const long long int, std::__cxx11::basic_string<char> >; _KeyOfValue = std::_Select1st<std::pair<const long long int, std::__cxx11::basic_string<char> > >; _Compare = std::less<long long int>; _Alloc = std::allocator<std::pair<const long long int, std::__cxx11::basic_string<char> > >]’:
/usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree<long long int, std::pair<const long long int, std::__cxx11::basic_string<char> >, std::_Select1st<std::pair<const long long int, std::__cxx11::basic_string<char> > >, std::less<long long int>, std::allocator<std::pair<const long long int, std::__cxx11::basic_string<char> > > >::const_iterator’ changed in GCC 7.1
2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/map:61:
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long int; _Tp = std::__cxx11::basic_string<char>; _Compare = std::less<long long int>; _Alloc = std::allocator<std::pair<const long long int, std::__cxx11::basic_string<char> > >]’,
inlined from ‘void ncbi::CBlastDBExtractor::x_SetGi2AccMap()’ at /<<PKGBUILDDIR>>/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp:267:22:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<long long int, std::pair<const long long int, std::__cxx11::basic_string<char> >, std::_Select1st<std::pair<const long long int, std::__cxx11::basic_string<char> > >, std::less<long long int>, std::allocator<std::pair<const long long int, std::__cxx11::basic_string<char> > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long int; _Tp = std::__cxx11::basic_string<char>; _Compare = std::less<long long int>; _Alloc = std::allocator<std::pair<const long long int, std::__cxx11::basic_string<char> > >]’,
inlined from ‘void ncbi::CBlastDBExtractor::x_SetGi2TitleMap()’ at /<<PKGBUILDDIR>>/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp:320:24:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<long long int, std::pair<const long long int, std::__cxx11::basic_string<char> >, std::_Select1st<std::pair<const long long int, std::__cxx11::basic_string<char> > >, std::less<long long int>, std::allocator<std::pair<const long long int, std::__cxx11::basic_string<char> > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long int; _Tp = std::__cxx11::basic_string<char>; _Compare = std::less<long long int>; _Alloc = std::allocator<std::pair<const long long int, std::__cxx11::basic_string<char> > >]’,
inlined from ‘void ncbi::CBlastDBExtractor::x_SetGi2SeqIdMap()’ at /<<PKGBUILDDIR>>/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp:292:25:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<long long int, std::pair<const long long int, std::__cxx11::basic_string<char> >, std::_Select1st<std::pair<const long long int, std::__cxx11::basic_string<char> > >, std::less<long long int>, std::allocator<std::pair<const long long int, std::__cxx11::basic_string<char> > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long int; _Tp = std::__cxx11::basic_string<char>; _Compare = std::less<long long int>; _Alloc = std::allocator<std::pair<const long long int, std::__cxx11::basic_string<char> > >]’,
inlined from ‘void ncbi::CBlastDBExtractor::x_SetGi2SeqIdMap()’ at /<<PKGBUILDDIR>>/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp:295:25:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<long long int, std::pair<const long long int, std::__cxx11::basic_string<char> >, std::_Select1st<std::pair<const long long int, std::__cxx11::basic_string<char> > >, std::less<long long int>, std::allocator<std::pair<const long long int, std::__cxx11::basic_string<char> > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long int; _Tp = std::__cxx11::basic_string<char>; _Compare = std::less<long long int>; _Alloc = std::allocator<std::pair<const long long int, std::__cxx11::basic_string<char> > >]’,
inlined from ‘std::string ncbi::CBlastDBExtractor::ExtractSeqId()’ at /<<PKGBUILDDIR>>/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp:348:41:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<long long int, std::pair<const long long int, std::__cxx11::basic_string<char> >, std::_Select1st<std::pair<const long long int, std::__cxx11::basic_string<char> > >, std::less<long long int>, std::allocator<std::pair<const long long int, std::__cxx11::basic_string<char> > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long int; _Tp = std::__cxx11::basic_string<char>; _Compare = std::less<long long int>; _Alloc = std::allocator<std::pair<const long long int, std::__cxx11::basic_string<char> > >]’,
inlined from ‘std::string ncbi::CBlastDBExtractor::ExtractTitle()’ at /<<PKGBUILDDIR>>/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp:375:41:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<long long int, std::pair<const long long int, std::__cxx11::basic_string<char> >, std::_Select1st<std::pair<const long long int, std::__cxx11::basic_string<char> > >, std::less<long long int>, std::allocator<std::pair<const long long int, std::__cxx11::basic_string<char> > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long long int; _Tp = std::__cxx11::basic_string<char>; _Compare = std::less<long long int>; _Alloc = std::allocator<std::pair<const long long int, std::__cxx11::basic_string<char> > >]’,
inlined from ‘std::string ncbi::CBlastDBExtractor::ExtractAccession()’ at /<<PKGBUILDDIR>>/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp:332:36:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<long long int, std::pair<const long long int, std::__cxx11::basic_string<char> >, std::_Select1st<std::pair<const long long int, std::__cxx11::basic_string<char> > >, std::less<long long int>, std::allocator<std::pair<const long long int, std::__cxx11::basic_string<char> > > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/blastdb_format'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/blast/blastdb_format/seq_writer.cpp -o seq_writer.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp -o blastdb_dataextract.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp -o blastdb_formatter.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp -o seq_formatter.o
/bin/rm -f libblastdb_format.so .libblastdb_format.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libblastdb_format.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC seq_writer.o blastdb_dataextract.o blastdb_formatter.o seq_formatter.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lseqdb -lxobjutil -lxobjmgr -lseq -lxser -lsequtil -lxutil -lxncbi -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb_format.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libblastdb_format.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libblastdb_format.so
/bin/ln -f .blastdb_format.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.blastdb_format.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/blastdb_format'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/dbindex'
/usr/bin/g++ -std=gnu++14 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp -o sequence_istream_fasta.o
/usr/bin/g++ -std=gnu++14 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp -o sequence_istream_bdb.o
/usr/bin/g++ -std=gnu++14 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/dbindex/dbindex.cpp -o dbindex.o
/usr/bin/g++ -std=gnu++14 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/dbindex/dbindex_factory.cpp -o dbindex_factory.o
/usr/bin/g++ -std=gnu++14 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/dbindex/dbindex_search.cpp -o dbindex_search.o
/bin/rm -f libxalgoblastdbindex.so .libxalgoblastdbindex.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libxalgoblastdbindex.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC sequence_istream_fasta.o sequence_istream_bdb.o dbindex.o dbindex_factory.o dbindex_search.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lblast -lseqdb -lxobjread -lxobjutil -lxobjmgr -lseqset -lseq -lxser -lxutil -lxncbi -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgoblastdbindex.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libxalgoblastdbindex.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libxalgoblastdbindex.so
/bin/ln -f .xalgoblastdbindex.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.xalgoblastdbindex.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/dbindex'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/blastdb_format'
cd objtools/blast/blastdb_format/unit_test/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=blastdb_format_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/blastdb_format/unit_test'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/dbindex'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/blastdb_format/unit_test'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/blastdb_format/unit_test'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/blastdb_format/unit_test'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/blastdb_format/unit_test'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objtools/blast/blastdb_format/unit_test TMPL=blastdb_format_unit_test -w -j4 --jobserver-auth=7,8 all
cd algo/blast/dbindex/makeindex/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=makeindex LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/dbindex/makeindex'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/dbindex/makeindex'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/dbindex/makeindex'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/dbindex/makeindex'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/dbindex/makeindex'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/blast/dbindex/makeindex TMPL=makeindex -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/dbindex/makeindex/mkindex_app.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp:35:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:39:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/objtools/blast/blastdb_format/unit_test/seq_formatter_unit_test.cpp:39:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/dbindex/makeindex/mkindex_app.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/dbindex/makeindex/main.cpp:47:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
-DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/sparse_ci.cpp -o sparse_ci.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/alntext.cpp -o alntext.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/score_builder_base.cpp -o score_builder_base.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/alnmgr/aln_container.cpp -o aln_container.o
/bin/rm -f libxalnmgr.so .libxalnmgr.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libxalnmgr.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC aln_builders.o aln_converters.o aln_generators.o aln_seqid.o aln_serial.o alndiag.o alnmap.o alnmapprint.o alnmatch.o alnmerger.o alnmix.o alnpos_ci.o alnsegments.o alnseq.o alnvec.o alnvec_iterator.o alnvecprint.o pairwise_aln.o sparse_aln.o sparse_ci.o alntext.o score_builder_base.o aln_container.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lxobjutil -lxobjmgr -lseqset -lseq -lxser -ltables -lxncbi -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalnmgr.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libxalnmgr.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libxalnmgr.so
/bin/ln -f .xalnmgr.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.xalnmgr.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/alnmgr'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/alnmgr'
cd algo/blast/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xblast UNIX_PROJ="" sources= configurables=configurables.null
cd objtools/align_format/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=align_format UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/api'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/align_format'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/api'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/align_format'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/api'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/align_format'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/align_format'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/align_format'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/blast/api TMPL=xblast -w -j4 --jobserver-auth=7,8 all
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/mod_reader.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/dbindex/makeindex/main.cpp:42:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbictype.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistre.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objtools/align_format TMPL=align_format -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/mod_reader.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp:49:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiargs.hpp:84,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp_api.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:42:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/cgi/cgictx.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/objtools/align_format/align_format_util.cpp:46:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/cgi/cgictx.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:41,
from /<<PKGBUILDDIR>>/c++/src/objtools/align_format/showdefline.cpp:55:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/cgi/cgictx.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/objtools/align_format/showalign.cpp:77:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp: In member function ‘virtual void ncbi::CMkIndexApplication::Init()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp:67:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
67 | auto_ptr< CArgDescriptions > arg_desc( new CArgDescriptions );
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_types_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/feat_ci.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:50,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_types_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/feat_ci.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:50,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/blastdb_format/seq_formatter.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/objtools/blast/blastdb_format/unit_test/seq_formatter_unit_test.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/blastdb_format/seq_formatter.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:54:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objtools/align_format/showdefline.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbictype.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistre.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_stack.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/src/objtools/align_format/showdefline.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:85:69: warning: ‘CSeqFormatterConfig’ is deprecated [-Wdeprecated-declarations]
85 | CSeqFormatterConfig config = CSeqFormatterConfig());
| ^
/<<PKGBUILDDIR>>/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here
43 | struct NCBI_DEPRECATED CSeqFormatterConfig {
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:96:85: warning: ‘CSeqFormatterConfig’ is deprecated [-Wdeprecated-declarations]
96 | void DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config = CSeqFormatterConfig());
| ^
/<<PKGBUILDDIR>>/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here
43 | struct NCBI_DEPRECATED CSeqFormatterConfig {
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:85:68: warning: ‘CSeqFormatterConfig’ is deprecated [-Wdeprecated-declarations]
85 | CSeqFormatterConfig config = CSeqFormatterConfig());
| ^
/<<PKGBUILDDIR>>/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here
43 | struct NCBI_DEPRECATED CSeqFormatterConfig {
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:96:84: warning: ‘CSeqFormatterConfig’ is deprecated [-Wdeprecated-declarations]
96 | void DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config = CSeqFormatterConfig());
| ^
/<<PKGBUILDDIR>>/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here
43 | struct NCBI_DEPRECATED CSeqFormatterConfig {
| ^~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:54:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/cgi/cgictx.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:41,
from /<<PKGBUILDDIR>>/c++/src/objtools/align_format/tabular.cpp:39:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp: In member function ‘void seq_writer::TestNoFormatSpecifier::test_method()’:
/<<PKGBUILDDIR>>/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:54:41: warning: ‘CSeqFormatter’ is deprecated [-Wdeprecated-declarations]
54 | BOOST_REQUIRE_THROW(CSeqFormatter f(format_spec, db, std::cout),
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:124:9: note: in definition of macro ‘BOOST_CHECK_THROW_IMPL_EX’
124 | S; \
| ^
/usr/include/boost/test/tools/old/interface.hpp:120:45: note: in expansion of macro ‘BOOST_CHECK_THROW_IMPL’
120 | #define BOOST_REQUIRE_THROW( S, E ) BOOST_CHECK_THROW_IMPL( S, E, true, "", REQUIRE )
| ^~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here
77 | class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp: In member function ‘void seq_writer::TestInvalidFormatSpecifiers_Empty::test_method()’:
/<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:122:57: warning: ‘CSeqFormatter’ is deprecated [-Wdeprecated-declarations]
122 | #define NcbiEmptyString NCBI_NS_NCBI::CNcbiEmptyString::Get()
| ^~~
/<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:124:9: note: in definition of macro ‘BOOST_CHECK_THROW_IMPL_EX’
124 | S; \
| ^
/usr/include/boost/test/tools/old/interface.hpp:120:45: note: in expansion of macro ‘BOOST_CHECK_THROW_IMPL’
120 | #define BOOST_REQUIRE_THROW( S, E ) BOOST_CHECK_THROW_IMPL( S, E, true, "", REQUIRE )
| ^~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:123:19: note: in expansion of macro ‘NcbiEmptyString’
123 | #define kEmptyStr NcbiEmptyString
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:61:41: note: in expansion of macro ‘kEmptyStr’
61 | BOOST_REQUIRE_THROW(CSeqFormatter f(kEmptyStr, db, std::cout),
| ^~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here
77 | class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp: In member function ‘void seq_writer::TestInvalidFormatSpecifiers_InvalidAlgoId::test_method()’:
/<<PKGBUILDDIR>>/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:68:25: warning: ‘CSeqFormatterConfig’ is deprecated [-Wdeprecated-declarations]
68 | CSeqFormatterConfig config;
| ^~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here
43 | struct NCBI_DEPRECATED CSeqFormatterConfig {
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:70:40: warning: ‘CSeqFormatter’ is deprecated [-Wdeprecated-declarations]
70 | BOOST_REQUIRE_THROW(CSeqFormatter f("%m", db, std::cout, config),
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:124:9: note: in definition of macro ‘BOOST_CHECK_THROW_IMPL_EX’
124 | S; \
| ^
/usr/include/boost/test/tools/old/interface.hpp:120:45: note: in expansion of macro ‘BOOST_CHECK_THROW_IMPL’
120 | #define BOOST_REQUIRE_THROW( S, E ) BOOST_CHECK_THROW_IMPL( S, E, true, "", REQUIRE )
| ^~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here
77 | class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp: In member function ‘void seq_writer::TestValidFormatSpecifiers::test_method()’:
/<<PKGBUILDDIR>>/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:77:25: warning: ‘CSeqFormatterConfig’ is deprecated [-Wdeprecated-declarations]
77 | CSeqFormatterConfig config;
| ^~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here
43 | struct NCBI_DEPRECATED CSeqFormatterConfig {
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:93:24: warning: ‘CSeqFormatter’ is deprecated [-Wdeprecated-declarations]
93 | CSeqFormatter f(*itr, db, std::cout, config);
| ^
/<<PKGBUILDDIR>>/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here
77 | class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:97:20: warning: ‘CSeqFormatter’ is deprecated [-Wdeprecated-declarations]
97 | CSeqFormatter f("%m", db, std::cout, config);
| ^
/<<PKGBUILDDIR>>/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here
77 | class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp: In member function ‘void seq_writer::TestRequestGiOidLength::test_method()’:
/<<PKGBUILDDIR>>/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:108:21: warning: ‘CSeqFormatter’ is deprecated [-Wdeprecated-declarations]
108 | CSeqFormatter f(format_spec, db, out);
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here
77 | class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp: In member function ‘void seq_writer::TestRequestSeqId::test_method()’:
/<<PKGBUILDDIR>>/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:150:21: warning: ‘CSeqFormatter’ is deprecated [-Wdeprecated-declarations]
150 | CSeqFormatter f(format_spec, db, out);
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here
77 | class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp: In member function ‘void seq_writer::TestRequestSeqIdLong::test_method()’:
/<<PKGBUILDDIR>>/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:194:21: warning: ‘CSeqFormatter’ is deprecated [-Wdeprecated-declarations]
194 | CSeqFormatter f(format_spec, db, out);
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here
77 | class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp: In member function ‘void seq_writer::TestRequestAccessionPIGTaxidTitle::test_method()’:
/<<PKGBUILDDIR>>/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:227:21: warning: ‘CSeqFormatter’ is deprecated [-Wdeprecated-declarations]
227 | CSeqFormatter f(format_spec, db, out);
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here
77 | class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp: In member function ‘void seq_writer::TestRequestGiGivenPIG::test_method()’:
/<<PKGBUILDDIR>>/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:258:21: warning: ‘CSeqFormatter’ is deprecated [-Wdeprecated-declarations]
258 | CSeqFormatter f(format_spec, db, out);
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here
77 | class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp: In member function ‘void seq_writer::TestRequestSequenceDataLength::test_method()’:
/<<PKGBUILDDIR>>/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:283:21: warning: ‘CSeqFormatter’ is deprecated [-Wdeprecated-declarations]
283 | CSeqFormatter f(format_spec, db, out);
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here
77 | class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp: In member function ‘void seq_writer::TestMaskedFasta::test_method()’:
/<<PKGBUILDDIR>>/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:313:25: warning: ‘CSeqFormatterConfig’ is deprecated [-Wdeprecated-declarations]
313 | CSeqFormatterConfig config;
| ^~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here
43 | struct NCBI_DEPRECATED CSeqFormatterConfig {
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:318:21: warning: ‘CSeqFormatter’ is deprecated [-Wdeprecated-declarations]
318 | CSeqFormatter f(format_spec, db, out, config);
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here
77 | class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp: In member function ‘void seq_writer::TestMaskedSequenceData::test_method()’:
/<<PKGBUILDDIR>>/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:357:25: warning: ‘CSeqFormatterConfig’ is deprecated [-Wdeprecated-declarations]
357 | CSeqFormatterConfig config;
| ^~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here
43 | struct NCBI_DEPRECATED CSeqFormatterConfig {
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:360:21: warning: ‘CSeqFormatter’ is deprecated [-Wdeprecated-declarations]
360 | CSeqFormatter f(format_spec, db, out, config);
| ^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here
77 | class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter
| ^~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/aln_explorer.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/alnmap.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/alnvec.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:40,
from /<<PKGBUILDDIR>>/c++/src/objtools/align_format/showalign.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbictype.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistre.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:31:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/remote_blast.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/blast_options_builder.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options.hpp:40,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/blast_options_cxx.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/scoremat/PssmWithParameters_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/scoremat/PssmWithParameters.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/blast_options_local_priv.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/blast_options_local_priv.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbictype.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistre.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_stack.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_exception.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/blast_options_local_priv.cpp:35:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/objtools/align_format/showdefline.cpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/blast_aux.cpp:49:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/seqloc/Seq_id_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/seqloc/Seq_id.hpp:42,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/blast_aux.cpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/aln_explorer.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/alnmap.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/alnvec.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:40,
from /<<PKGBUILDDIR>>/c++/src/objtools/align_format/align_format_util.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbictype.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistre.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:31:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:43:
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
108 | auto_ptr<CMemoryFile> m_memGi2GeneFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:43:
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
108 | auto_ptr<CMemoryFile> m_memGi2GeneFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
111 | auto_ptr<CMemoryFile> m_memGene2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
114 | auto_ptr<CMemoryFile> m_memGi2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
111 | auto_ptr<CMemoryFile> m_memGene2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
117 | auto_ptr<CMemoryFile> m_memGene2GiFile;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
114 | auto_ptr<CMemoryFile> m_memGi2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
117 | auto_ptr<CMemoryFile> m_memGene2GiFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1554 | static auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1554 | static auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/showalign.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/objtools/align_format/showalign.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/alnseq.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/alnmatch.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/alnmix.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/align_format/tabular.cpp:37:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/seqloc/Seq_id_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/seqloc/Seq_id.hpp:42,
from /<<PKGBUILDDIR>>/c++/src/objtools/align_format/tabular.cpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
743 | auto_ptr<CObjectIStream> m_ObjectStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
654 | auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/alnseq.hpp:216:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
216 | auto_ptr<CAlnMixStarts> m_Starts;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/tabular.hpp:41,
from /<<PKGBUILDDIR>>/c++/src/objtools/align_format/tabular.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
108 | auto_ptr<CMemoryFile> m_memGi2GeneFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
111 | auto_ptr<CMemoryFile> m_memGene2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
114 | auto_ptr<CMemoryFile> m_memGi2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
117 | auto_ptr<CMemoryFile> m_memGene2GiFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1554 | static auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
449 | auto_ptr<CNcbiIfstream> m_ConfigFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
450 | auto_ptr<CNcbiRegistry> m_Reg;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:54,
from /<<PKGBUILDDIR>>/c++/src/objtools/align_format/tabular.cpp:44:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/blast_setup_cxx.cpp:36:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options.hpp:40,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/blast_setup_cxx.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbitime.hpp:65,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_system.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbifile.hpp:53,
from /<<PKGBUILDDIR>>/c++/include/util/util_misc.hpp:33,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/blast_setup_cxx.cpp:35:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/vectorscreen.hpp:40,
from /<<PKGBUILDDIR>>/c++/src/objtools/align_format/vectorscreen.cpp:33:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/html/html.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/vectorscreen.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/vectorscreen.hpp:42:
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
108 | auto_ptr<CMemoryFile> m_memGi2GeneFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
111 | auto_ptr<CMemoryFile> m_memGene2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
114 | auto_ptr<CMemoryFile> m_memGi2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
117 | auto_ptr<CMemoryFile> m_memGene2GiFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1554 | static auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/align_format'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/align_format/format_flags.cpp -o format_flags.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/align_format/align_format_util.cpp -o align_format_util.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/align_format/showdefline.cpp -o showdefline.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/align_format/showalign.cpp -o showalign.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/align_format/tabular.cpp -o tabular.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/align_format/vectorscreen.cpp -o vectorscreen.o
/usrIn file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/aln_explorer.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/alnmap.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/alnvec.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:40,
from /<<PKGBUILDDIR>>/c++/src/objtools/align_format/seqalignfilter.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/general/User_object_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/general/User_object.hpp:42,
from /<<PKGBUILDDIR>>/c++/src/objtools/align_format/seqalignfilter.cpp:35:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/blast_seqalign.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/blast_seqalign.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/blast_seqalign.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:43:
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
108 | auto_ptr<CMemoryFile> m_memGi2GeneFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
111 | auto_ptr<CMemoryFile> m_memGene2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
114 | auto_ptr<CMemoryFile> m_memGi2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
117 | auto_ptr<CMemoryFile> m_memGene2GiFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1554 | static auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42,
from /<<PKGBUILDDIR>>/c++/src/objtools/align_format/seqalignfilter.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/align_format/seqalignfilter.cpp: In member function ‘void ncbi::align_format::CSeqAlignFilter::ReadSeqalignSet(const std::string&, ncbi::objects::CSeq_align_set&)’:
/<<PKGBUILDDIR>>/c++/src/objtools/align_format/seqalignfilter.cpp:516:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
516 | auto_ptr<CObjectIStream> asn_in(CObjectIStream::Open(fname, eSerial_AsnText));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/align_format/seqalignfilter.cpp: In member function ‘void ncbi::align_format::CSeqAlignFilter::WriteSeqalignSet(const std::string&, const ncbi::objects::CSeq_align_set&)’:
/<<PKGBUILDDIR>>/c++/src/objtools/align_format/seqalignfilter.cpp:522:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
522 | auto_ptr<CObjectOStream> asn_out(CObjectOStream::Open(fname, eSerial_AsnText));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /usr/include/c++/12/bits/stl_algo.h:60,
from /usr/include/c++/12/algorithm:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:180:
/usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Distance = int; _Tp = long long int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1802 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1908 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:1844:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1844 | __final_insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1844:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from ‘void ncbi::align_format::CSeqAlignFilter::ReadGiVector(const std::string&, std::vector<long long int>&, bool)’ at /<<PKGBUILDDIR>>/c++/src/objtools/align_format/seqalignfilter.cpp:549:13:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1940:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1940 | std::__final_insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from ‘void ncbi::align_format::CSeqAlignFilter::ReadGiList(const std::string&, std::__cxx11::list<long long int>&, bool)’ at /<<PKGBUILDDIR>>/c++/src/objtools/align_format/seqalignfilter.cpp:535:13:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1940:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1940 | std::__final_insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from ‘void ncbi::align_format::s_GetFilteredRedundantGis(ncbi::CRef<ncbi::CSeqDB>, int, std::vector<long long int>&)’ at /<<PKGBUILDDIR>>/c++/src/objtools/align_format/seqalignfilter.cpp:186:6,
inlined from ‘void ncbi::align_format::CSeqAlignFilter::FilterBySeqDB(const ncbi::objects::CSeq_align_set&, ncbi::CRef<ncbi::CSeqDB>, ncbi::objects::CSeq_align_set&)’ at /<<PKGBUILDDIR>>/c++/src/objtools/align_format/seqalignfilter.cpp:213:42:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1940:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1940 | std::__final_insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/api'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/blast_aux.cpp -o blast_aux.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/blast_options_cxx.cpp -o blast_options_cxx.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/blast_options_local_priv.cpp -o blast_options_local_priv.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/blast_options_builder.cpp -o blast_options_builder.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/blast_setup_cxx.cpp -o blast_setup_cxx.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/blast_seqalign.cpp -o blast_seqalign.o
/usr/bin/g++ -std=In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options_handle.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/blast_options_handle.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbictype.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistre.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_stack.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_exception.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/blast_options_handle.cpp:35:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/api/blast_options_handle.cpp: In member function ‘char* ncbi::blast::CBlastOptionsHandle::GetFilterString() const’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/api/blast_options_handle.cpp:100:35: warning: ‘char* ncbi::blast::CBlastOptions::GetFilterString() const’ is deprecated [-Wdeprecated-declarations]
100 | return m_Opts->GetFilterString(); /* NCBI_FAKE_WARNING */
| ~~~~~~~~~~~~~~~~~~~~~~~^~
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here
178 | NCBI_DEPRECATED char* GetFilterString() const;
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/api/blast_options_handle.cpp: In member function ‘void ncbi::blast::CBlastOptionsHandle::SetFilterString(const char*, bool)’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/api/blast_options_handle.cpp:106:28: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations]
106 | m_Opts->SetFilterString(f, clear); /* NCBI_FAKE_WARNING */
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here
180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true);
| ^~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/cgi/cgictx.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/objtools/align_format/taxFormat.cpp:51:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options_handle.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_nucl_options.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/blast_nucl_options.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/scoremat/PssmWithParameters_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/scoremat/PssmWithParameters.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/aln_explorer.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/alnmap.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/alnvec.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/taxFormat.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objtools/align_format/taxFormat.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/taxon1/Taxon1_data_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/taxon1/Taxon1_data.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/objects/taxon1/taxon1__.hpp:1,
from /<<PKGBUILDDIR>>/c++/include/objects/taxon1/taxon1.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/align_format/taxFormat.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:43:
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
108 | auto_ptr<CMemoryFile> m_memGi2GeneFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
111 | auto_ptr<CMemoryFile> m_memGene2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
114 | auto_ptr<CMemoryFile> m_memGi2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
117 | auto_ptr<CMemoryFile> m_memGene2GiFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1554 | static auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/gbloader.hpp:48,
from /<<PKGBUILDDIR>>/c++/src/objtools/align_format/taxFormat.cpp:42:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objtools/align_format/taxFormat.cpp:43:
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options_handle.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_nucl_options.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/disc_nucl_options.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/disc_nucl_options.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/scoremat/PssmWithParameters_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/scoremat/PssmWithParameters.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objtools/align_format/showdefline.cpp:40:
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options_handle.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_prot_options.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/blast_prot_options.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/scoremat/PssmWithParameters_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/scoremat/PssmWithParameters.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_types_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/feat_ci.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:50,
from /<<PKGBUILDDIR>>/c++/src/objtools/align_format/aln_printer.cpp:37:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/bioseq_handle.hpp:35,
from /<<PKGBUILDDIR>>/c++/src/objtools/align_format/aln_printer.cpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:54:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options_handle.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_prot_options.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_advprot_options.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/psiblast_options.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/psiblast_options.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/scoremat/PssmWithParameters_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/scoremat/PssmWithParameters.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options_handle.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_prot_options.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_rps_options.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/blast_rps_options.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/scoremat/PssmWithParameters_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/scoremat/PssmWithParameters.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/blast_options_handle.cpp -o blast_options_handle.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/blast_nucl_options.cpp -o blast_nucl_options.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/disc_nucl_options.cpp -o disc_nucl_options.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/blast_prot_options.cpp -o blast_prot_options.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/psiblast_options.cpp -o psiblast_options.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/blast_rps_options.cpp -o blast_rps_options.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/ncbi-blast+-2In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options_handle.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_prot_options.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blastx_options.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/blastx_options.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/scoremat/PssmWithParameters_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/scoremat/PssmWithParameters.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options_handle.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_prot_options.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/tblastx_options.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/tblastx_options.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/scoremat/PssmWithParameters_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/scoremat/PssmWithParameters.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options_handle.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_prot_options.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_advprot_options.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/tblastn_options.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/tblastn_options.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/scoremat/PssmWithParameters_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/scoremat/PssmWithParameters.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options_handle.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_prot_options.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_rps_options.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/rpstblastn_options.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/rpstblastn_options.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/scoremat/PssmWithParameters_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/scoremat/PssmWithParameters.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options_handle.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_nucl_options.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/phiblast_nucl_options.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/phiblast_nucl_options.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/scoremat/PssmWithParameters_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/scoremat/PssmWithParameters.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/blastx_options.cpp -o blastx_options.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/tblastx_options.cpp -o tblastx_options.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/tblastn_options.cpp -o tblastn_options.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/rpstblastn_options.cpp -o rpstblastn_options.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/phiblast_nucl_options.cpp -o phiblast_nucl_options.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/phiblast_prot_options.cpp -o phiblast_prot_options.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options_handle.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_prot_options.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/phiblast_prot_options.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/phiblast_prot_options.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/scoremat/PssmWithParameters_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/scoremat/PssmWithParameters.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/pssm_engine.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/query_data.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/setup_factory.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/prelim_stage.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/local_blast.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/local_blast.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:40:
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
108 | auto_ptr<CMemoryFile> m_memGi2GeneFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
111 | auto_ptr<CMemoryFile> m_memGene2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
114 | auto_ptr<CMemoryFile> m_memGi2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
117 | auto_ptr<CMemoryFile> m_memGene2GiFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/align_format/align_format_util.cpp:93:1: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
93 | auto_ptr<CGeneInfoFileReader> CAlignFormatUtil::m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/remote_blast.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/remote_blast.cpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbitime.hpp:65,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_system.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/remote_blast.cpp:35:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_types_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/feat_ci.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:50,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:54:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
743 | auto_ptr<CObjectIStream> m_ObjectStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/remote_blast.cpp:41:
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/search_strategy.hpp:178:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
178 | auto_ptr<CImportStrategyData> m_Data;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/search_strategy.hpp:181:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
181 | auto_ptr<CBlastOptionsBuilder> m_OptionsBuilder;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1554 | static auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/align_format/align_format_util.cpp: In static member function ‘static bool ncbi::align_format::CAlignFormatUtil::SortHitByPercentIdentityDescendingEx(const ncbi::CRef<ncbi::objects::CSeq_align_set>&, const ncbi::CRef<ncbi::objects::CSeq_align_set>&)’:
/<<PKGBUILDDIR>>/c++/src/objtools/align_format/align_format_util.cpp:1448:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1448 | auto_ptr<CAlignFormatUtil::SSeqAlignSetCalcParams> seqSetInfo1( CAlignFormatUtil::GetSeqAlignSetCalcParamsFromASN(*info1));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/align_format/align_format_util.cpp:1449:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1449 | auto_ptr<CAlignFormatUtil::SSeqAlignSetCalcParams> seqSetInfo2( CAlignFormatUtil::GetSeqAlignSetCalcParamsFromASN(*info2));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_seqinfosrc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/seqinfosrc_seqdb.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp:37:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/seqloc/Seq_id_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/seqloc/Seq_id.hpp:42,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp:35:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_seqinfosrc.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/seqinfosrc_bioseq.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_seqinfosrc.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
-DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/pssm_engine.cpp -o pssm_engine.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/local_blast.cpp -o local_blast.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/remote_blast.cpp -o remote_blast.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp -o seqinfosrc_seqvec.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp -o seqinfosrc_seqdb.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp -o seqinfosrc_bioseq.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SA/<<PKGBUILDDIR>>/c++/src/objtools/align_format/align_format_util.cpp: In static member function ‘static ncbi::align_format::CAlignFormatUtil::SSeqAlignSetCalcParams* ncbi::align_format::CAlignFormatUtil::GetSeqAlignCalcParams(const ncbi::objects::CSeq_align&)’:
/<<PKGBUILDDIR>>/c++/src/objtools/align_format/align_format_util.cpp:4076:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
4076 | auto_ptr<SSeqAlignSetCalcParams> seqSetInfo(new SSeqAlignSetCalcParams);
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/align_format/align_format_util.cpp: In static member function ‘static ncbi::align_format::CAlignFormatUtil::SSeqAlignSetCalcParams* ncbi::align_format::CAlignFormatUtil::GetSeqAlignSetCalcParamsFromASN(const ncbi::objects::CSeq_align_set&)’:
/<<PKGBUILDDIR>>/c++/src/objtools/align_format/align_format_util.cpp:4355:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
4355 | auto_ptr<SSeqAlignSetCalcParams> seqSetInfo(new SSeqAlignSetCalcParams);
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/sseqloc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/seqsrc_multiseq.hpp:40,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/seqsrc_multiseq.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/seqloc/Seq_id_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/seqloc/Seq_id.hpp:42,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/seqsrc_multiseq.cpp:35:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/api/seqsrc_multiseq.cpp: In function ‘BlastSeqSrc* ncbi::blast::MultiSeqBlastSeqSrcInit(TSeqLocVector&, EBlastProgramType, bool)’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/api/seqsrc_multiseq.cpp:562:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
562 | auto_ptr<SMultiSeqSrcNewArgs> args
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/blast_setup.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/seqsrc_seqdb.cpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/seqloc/Seq_id_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/seqloc/Seq_id.hpp:42,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/seqsrc_seqdb.cpp:34:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/query_data.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/seqsrc_query_factory.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/seqsrc_query_factory.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/sseqloc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/bl2seq.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/bl2seq.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_types.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/bl2seq.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/dbindex/makeindex'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=makembindex /<<PKGBUILDDIR>>/c++/src/algo/blast/dbindex/makeindex/main.cpp -o main.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=makembindex /<<PKGBUILDDIR>>/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp -o mkindex_app.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie main.o mkindex_app.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lxalgoblastdbindex -lblast -lcomposition_adjustment -lseqdb -lblastdb -lxobjread -lvariation -lsubmit -lxlogging -lxobjutil -ltables -lxconnect -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o makembindex
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f makembindex /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f makembindex /<<PKGBUILDDIR>>/c++/BUILD/bin/makembindex
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/dbindex/makeindex'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/dbindex/makeindex'
cd objtools/format/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xformat UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/format'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/format'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/format'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/format'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/format'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objtools/format TMPL=xformat -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/blast_objmgr_tools.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/bioseq_handle.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/blast_objmgr_tools.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/mapped_feat.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/feature.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:48,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/contig_item.cpp:45:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/contig_item.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/basecount_item.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/basecount_item.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_types_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/feat_ci.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:50,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/accession_item.cpp:40:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/accession_item.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/dust_filter.hpp:41,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/blast_objmgr_tools.cpp:51:
/<<PKGBUILDDIR>>/c++/include/algo/dustmask/symdust.hpp:159:14: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
159 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq );
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/dustmask/symdust.hpp:168:14: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
168 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:54:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:49,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/basecount_item.cpp:41:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:49:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objtools/format/accession_item.cpp:46:
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:322:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
322 | auto_ptr<CPacked_seqpnt> m_pOpticalMapPointsDestroyer;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:322:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
322 | auto_ptr<CPacked_seqpnt> m_pOpticalMapPointsDestroyer;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:479:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
479 | auto_ptr<SAnnotSelector> m_Selector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:479:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
479 | auto_ptr<SAnnotSelector> m_Selector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:322:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
322 | auto_ptr<CPacked_seqpnt> m_pOpticalMapPointsDestroyer;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:479:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
479 | auto_ptr<SAnnotSelector> m_Selector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_types_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/feat_ci.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:50,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/comment_item.cpp:58:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/comment_item.cpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:54:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objtools/format/comment_item.cpp:63:
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:322:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
322 | auto_ptr<CPacked_seqpnt> m_pOpticalMapPointsDestroyer;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:479:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
479 | auto_ptr<SAnnotSelector> m_Selector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/format/comment_item.cpp: In function ‘void ncbi::objects::s_GetAssemblyInfo(const CBioseqContext&, std::string&, const CUser_object&)’:
/<<PKGBUILDDIR>>/c++/src/objtools/format/comment_item.cpp:374:16: warning: unused variable ‘is_html’ [-Wunused-variable]
374 | const bool is_html = ctx.Config().DoHTML();
| ^~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/format'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/format/accession_item.cpp -o accession_item.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/format/basecount_item.cpp -o basecount_item.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/format/comment_item.cpp -o comment_item.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/format/contig_item.cpp -o contig_item.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/format/date_item.cpp -o date_item.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/format/dbsource_item.cpp -o dbsource_item.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/seqsrc_multiseq.cpp -o seqsrc_multiseq.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/seqsrc_seqdb.cpp -o seqsrc_seqdb.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/seqsrc_query_factory.cpp -o seqsrc_query_factory.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/bl2seq.cpp -o bl2seq.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/blast_objmgr_tools.cpp -o blast_objmgr_tools.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/repeats_filter_cxx.cpp -o repeats_filter_cxx.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /build/ncbi-blast+-iIn file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<long long int>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘std::string ncbi::objects::s_CreateHistCommentString(const std::string&, const std::string&, const CSeq_hist_rec&, CBioseqContext&)’ at /<<PKGBUILDDIR>>/c++/src/objtools/format/comment_item.cpp:2125:26:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/dbsource_item.cpp:51:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/dbsource_item.cpp:32:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/mapped_feat.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/feature.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:48,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/date_item.cpp:43:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/date_item.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_types_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/feat_ci.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:50,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/defline_item.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/defline_item.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:49:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:54,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/dbsource_item.cpp:56:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:54:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:322:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
322 | auto_ptr<CPacked_seqpnt> m_pOpticalMapPointsDestroyer;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:479:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
479 | auto_ptr<SAnnotSelector> m_Selector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_results.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/uniform_search.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/psibl2seq.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/psibl2seq.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_types.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/uniform_search.hpp:39:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_types_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/feat_ci.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:50,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/repeats_filter_cxx.cpp:44:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/iterator.hpp:35,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/repeats_filter_cxx.cpp:39:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objtools/format/dbsource_item.cpp:61:
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:322:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
322 | auto_ptr<CPacked_seqpnt> m_pOpticalMapPointsDestroyer;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objtools/format/defline_item.cpp:41:
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:322:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
322 | auto_ptr<CPacked_seqpnt> m_pOpticalMapPointsDestroyer;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:479:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
479 | auto_ptr<SAnnotSelector> m_Selector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:479:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
479 | auto_ptr<SAnnotSelector> m_Selector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:54:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const ncbi::objects::CSeq_id_Handle&}; _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator<ncbi::objects::CSeq_id_Handle>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<ncbi::objects::CSeq_id_Handle>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator<ncbi::objects::CSeq_id_Handle>]’,
inlined from ‘void ncbi::objects::s_AddToUniqueIdList(const CSeq_id_Handle&, std::vector<CSeq_id_Handle>&)’ at /<<PKGBUILDDIR>>/c++/src/objtools/format/dbsource_item.cpp:119:25,
inlined from ‘virtual void ncbi::objects::CDBSourceItem::x_GatherInfo(ncbi::objects::CBioseqContext&)’ at /<<PKGBUILDDIR>>/c++/src/objtools/format/dbsource_item.cpp:197:40:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/mapped_feat.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/feature.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:48,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/genome_item.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/genome_item.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:49:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/ctrl_items.cpp:49:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/ctrl_items.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:322:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
322 | auto_ptr<CPacked_seqpnt> m_pOpticalMapPointsDestroyer;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:479:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
479 | auto_ptr<SAnnotSelector> m_Selector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_results.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/uniform_search.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/local_db_adapter.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/local_db_adapter.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_types.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/uniform_search.hpp:39:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/feature_item.cpp:90:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/feature_item.cpp:44:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objtools/format/feature_item.cpp:91:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:54,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/ctrl_items.cpp:53:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objtools/format/feature_item.cpp:94:
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/format/items/gene_finder.hpp:44,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/feature_item.cpp:108:
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:322:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
322 | auto_ptr<CPacked_seqpnt> m_pOpticalMapPointsDestroyer;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:479:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
479 | auto_ptr<SAnnotSelector> m_Selector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/format/items/gene_finder.hpp:113:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
113 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objtools/format/ctrl_items.cpp:58:
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:322:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
322 | auto_ptr<CPacked_seqpnt> m_pOpticalMapPointsDestroyer;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:479:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
479 | auto_ptr<SAnnotSelector> m_Selector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/format/feature_item.cpp: In function ‘const std::string& ncbi::objects::s_AaName(int)’:
/<<PKGBUILDDIR>>/c++/src/objtools/format/feature_item.cpp:2115:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2115 | if ( idx > 0 && idx < ArraySize(s_TrnaList) ) {
| ~~~~^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/query_data.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/setup_factory.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/psiblast.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/psiblast.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
stack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/format/defline_item.cpp -o defline_item.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/format/feature_item.cpp -o feature_item.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/format/genome_item.cpp -o genome_item.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/format/ctrl_items.cpp -o ctrl_items.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/format/keywords_item.cpp -o keywords_item.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/format/locus_item.cpp -o locus_item.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<BUILDDIR>>/ncbi-blast+-2.1In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/mapped_feat.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/feature.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:48,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/keywords_item.cpp:53:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/keywords_item.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:49:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:322:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
322 | auto_ptr<CPacked_seqpnt> m_pOpticalMapPointsDestroyer;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:479:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
479 | auto_ptr<SAnnotSelector> m_Selector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
449 | auto_ptr<CNcbiIfstream> m_ConfigFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
450 | auto_ptr<CNcbiRegistry> m_Reg;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/format/keywords_item.cpp: In member function ‘virtual void ncbi::objects::CKeywordsItem::x_GatherInfo(ncbi::objects::CBioseqContext&)’:
/<<PKGBUILDDIR>>/c++/src/objtools/format/keywords_item.cpp:344:18: warning: catching polymorphic type ‘class ncbi::CException’ by value [-Wcatch-value=]
344 | } catch (CException) {
| ^~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/locus_item.cpp:55:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/locus_item.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:54,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/locus_item.cpp:59:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/primary_item.cpp:41:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/primary_item.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objtools/format/locus_item.cpp:65:
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:322:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
322 | auto_ptr<CPacked_seqpnt> m_pOpticalMapPointsDestroyer;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:479:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
479 | auto_ptr<SAnnotSelector> m_Selector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/query_data.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/setup_factory.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/psiblast_impl.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/psiblast_impl.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:54,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/primary_item.cpp:43:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objtools/format/primary_item.cpp:48:
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:322:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
322 | auto_ptr<CPacked_seqpnt> m_pOpticalMapPointsDestroyer;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:479:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
479 | auto_ptr<SAnnotSelector> m_Selector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/format/primary_item.cpp: In member function ‘void ncbi::objects::CPrimaryItem::x_GetStrForPrimary(ncbi::objects::CBioseqContext&)’:
/<<PKGBUILDDIR>>/c++/src/objtools/format/primary_item.cpp:220:63: warning: comparison of integer expressions of different signedness: ‘ncbi::TSeqPos’ {aka ‘unsigned int’} and ‘ncbi::TSignedSeqPos’ {aka ‘int’} [-Wsign-compare]
220 | if ( ctx.IsRefSeq() && last_stop > -1 && (this_start > (last_stop + 1)) ) {
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/format/primary_item.cpp:221:28: warning: comparison of integer expressions of different signedness: ‘ncbi::TSeqPos’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
221 | if (this_start < (15 + last_stop) ) {
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options_handle.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_prot_options.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_advprot_options.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/psiblast_options.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/psiblast_iteration.cpp:37:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/seqloc/Seq_id_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/seqloc/Seq_id.hpp:42,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/psiblast_iteration.cpp:34:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
ztKfv/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_mtlock.cpp -o blast_mtlock.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/psibl2seq.cpp -o psibl2seq.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/local_db_adapter.cpp -o local_db_adapter.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/psiblast.cpp -o psiblast.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/psiblast_impl.cpp -o psiblast_impl.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/psiblast_iteration.cpp -o psiblast_iteration.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/psi_pssm_input.cpp -o psi_pssm_input.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/mapped_feat.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/feature.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:48,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/segment_item.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/segment_item.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_types_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/feat_ci.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/source_item.cpp:41:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/source_item.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_types_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/feat_ci.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:50,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/sequence_item.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/sequence_item.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:49:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/psi_pssm_input.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/psi_pssm_input.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/psi_pssm_input.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:322:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
322 | auto_ptr<CPacked_seqpnt> m_pOpticalMapPointsDestroyer;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:479:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
479 | auto_ptr<SAnnotSelector> m_Selector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objtools/format/reference_item.cpp:60:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/reference_item.cpp:35:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:54:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:54,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/source_item.cpp:42:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/msa_pssm_input.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/msa_pssm_input.cpp:37:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/msa_pssm_input.hpp:38:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_types_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/feat_ci.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:50,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/reference_item.cpp:61:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objtools/format/sequence_item.cpp:43:
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:322:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
322 | auto_ptr<CPacked_seqpnt> m_pOpticalMapPointsDestroyer;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:479:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
479 | auto_ptr<SAnnotSelector> m_Selector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objtools/format/source_item.cpp:47:
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:322:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
322 | auto_ptr<CPacked_seqpnt> m_pOpticalMapPointsDestroyer;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:479:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
479 | auto_ptr<SAnnotSelector> m_Selector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/format/source_item.cpp: In member function ‘void ncbi::objects::CSourceItem::x_GatherInfoIdx(ncbi::objects::CBioseqContext&)’:
/<<PKGBUILDDIR>>/c++/src/objtools/format/source_item.cpp:182:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
182 | for (int i = 0; i < sizeof (legal_organelles) / sizeof (const char*); i++) {
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/format/source_item.cpp: In member function ‘void ncbi::objects::CSourceItem::x_SetSource(const ncbi::objects::CBioSource&, const ncbi::CSerialObject&)’:
/<<PKGBUILDDIR>>/c++/src/objtools/format/source_item.cpp:387:21: warning: comparison of integer expressions of different signedness: ‘ncbi::objects::CBioSource_Base::TGenome’ {aka ‘int’} and ‘const unsigned int’ [-Wsign-compare]
387 | if ( genome >= s_organelle_prefix_size ) {
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objtools/format/reference_item.cpp:70:
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:322:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
322 | auto_ptr<CPacked_seqpnt> m_pOpticalMapPointsDestroyer;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:479:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
479 | auto_ptr<SAnnotSelector> m_Selector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/mod_reader.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/aln_reader.hpp:41,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/msa_pssm_input.cpp:42:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/api/msa_pssm_input.cpp: In member function ‘void ncbi::blast::CPsiBlastInputClustalW::x_ReadAsciiMsa(ncbi::CNcbiIstream&)’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/api/msa_pssm_input.cpp:125:20: warning: ‘void ncbi::CAlnReader::Read(bool, bool, ncbi::objects::ILineErrorListener*)’ is deprecated [-Wdeprecated-declarations]
125 | reader.Read(false, true);
| ~~~~~~~~~~~^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/readers/aln_reader.hpp:215:10: note: declared here
215 | void Read(
| ^~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/api/msa_pssm_input.cpp: In member function ‘void ncbi::blast::CPsiBlastInputClustalW::x_ExtractAlignmentData()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/api/msa_pssm_input.cpp:376:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘Uint4’ {aka ‘unsigned int’} [-Wsign-compare]
376 | while (k < m_Msa->dimensions->query_length &&
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2.0+ds/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/format/primary_item.cpp -o primary_item.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/format/reference_item.cpp -o reference_item.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/format/segment_item.cpp -o segment_item.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/format/sequence_item.cpp -o sequence_item.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/format/source_item.cpp -o source_item.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/format/version_item.cpp -o version_item.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/format/wgs_item.cpp -o wgs_item.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compIn file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/mapped_feat.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/feature.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:48,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/wgs_item.cpp:40:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/wgs_item.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/mapped_feat.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/feature.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:48,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/version_item.cpp:40:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/version_item.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/flat_seqloc.cpp:42:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/general/Int_fuzz_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/general/Int_fuzz.hpp:44,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/flat_seqloc.cpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/mapped_feat.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/feature.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:48,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/tsa_item.cpp:40:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/tsa_item.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:49:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:322:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
322 | auto_ptr<CPacked_seqpnt> m_pOpticalMapPointsDestroyer;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:479:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
479 | auto_ptr<SAnnotSelector> m_Selector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:49:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_results.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/blast_aux_priv.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/blast_aux_priv.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/blast_aux_priv.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:322:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
322 | auto_ptr<CPacked_seqpnt> m_pOpticalMapPointsDestroyer;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:479:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
479 | auto_ptr<SAnnotSelector> m_Selector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:49:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:54,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/flat_seqloc.cpp:44:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:322:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
322 | auto_ptr<CPacked_seqpnt> m_pOpticalMapPointsDestroyer;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:479:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
479 | auto_ptr<SAnnotSelector> m_Selector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objtools/format/flat_seqloc.cpp:48:
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:322:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
322 | auto_ptr<CPacked_seqpnt> m_pOpticalMapPointsDestroyer;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:479:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
479 | auto_ptr<SAnnotSelector> m_Selector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/pssm_engine.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/psiblast_aux_priv.cpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/psiblast_aux_priv.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/psiblast_aux_priv.cpp:34:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const ncbi::objects::CSeq_id_Handle&}; _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator<ncbi::objects::CSeq_id_Handle>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<ncbi::objects::CSeq_id_Handle>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ncbi::objects::CSeq_id_Handle; _Alloc = std::allocator<ncbi::objects::CSeq_id_Handle>]’,
inlined from ‘std::back_insert_iterator<_Container>& std::back_insert_iterator<_Container>::operator=(const typename _Container::value_type&) [with _Container = std::vector<ncbi::objects::CSeq_id_Handle>]’ at /usr/include/c++/12/bits/stl_iterator.h:735:22,
inlined from ‘static _OI std::__copy_move<_IsMove, _IsSimple, _Category>::__copy_m(_II, _II, _OI) [with _II = std::_Rb_tree_const_iterator<ncbi::objects::CSeq_id_Handle>; _OI = std::back_insert_iterator<std::vector<ncbi::objects::CSeq_id_Handle> >; bool _IsMove = false; bool _IsSimple = false; _Category = std::bidirectional_iterator_tag]’ at /usr/include/c++/12/bits/stl_algobase.h:353:16,
inlined from ‘_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = _Rb_tree_const_iterator<ncbi::objects::CSeq_id_Handle>; _OI = back_insert_iterator<vector<ncbi::objects::CSeq_id_Handle> >]’ at /usr/include/c++/12/bits/stl_algobase.h:495:30,
inlined from ‘_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = _Rb_tree_const_iterator<ncbi::objects::CSeq_id_Handle>; _OI = back_insert_iterator<vector<ncbi::objects::CSeq_id_Handle> >]’ at /usr/include/c++/12/bits/stl_algobase.h:522:42,
inlined from ‘_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = _Rb_tree_const_iterator<ncbi::objects::CSeq_id_Handle>; _OI = back_insert_iterator<vector<ncbi::objects::CSeq_id_Handle> >]’ at /usr/include/c++/12/bits/stl_algobase.h:529:31,
inlined from ‘_OI std::copy(_II, _II, _OI) [with _II = _Rb_tree_const_iterator<ncbi::objects::CSeq_id_Handle>; _OI = back_insert_iterator<vector<ncbi::objects::CSeq_id_Handle> >]’ at /usr/include/c++/12/bits/stl_algobase.h:620:7,
inlined from ‘ncbi::objects::CFlatSeqLoc::CFlatSeqLoc(const ncbi::objects::CSeq_loc&, ncbi::objects::CBioseqContext&, TType, bool, bool, bool)’ at /<<PKGBUILDDIR>>/c++/src/objtools/format/flat_seqloc.cpp:190:17:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::objects::CSeq_id_Handle*, std::vector<ncbi::objects::CSeq_id_Handle> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/12/list:64,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_stack.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/usr/include/c++/12/bits/list.tcc: In member function ‘std::__cxx11::list<_Tp, _Alloc>::iterator std::__cxx11::list<_Tp, _Alloc>::insert(const_iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/12/bits/list.tcc:117:5: note: parameter passing for argument of type ‘std::__cxx11::list<double>::const_iterator’ changed in GCC 7.1
117 | list<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/list.tcc: In member function ‘void std::__cxx11::list<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/12/bits/list.tcc:247:15: note: parameter passing for argument of type ‘std::__cxx11::list<double>::const_iterator’ changed in GCC 7.1
247 | insert(end(), __new_size, __x);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
523 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘ncbi::CNcbiMatrix<T>::CNcbiMatrix(size_t, size_t, T) [with T = double]’ at /<<PKGBUILDDIR>>/c++/include/util/math/matrix.hpp:293:18,
inlined from ‘static ncbi::CNcbiMatrix<double>* ncbi::blast::CScorematPssmConverter::GetWeightedResidueFrequencies(const ncbi::objects::CPssmWithParameters&)’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/api/psiblast_aux_priv.cpp:328:73:
/usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1032 | _M_fill_insert(end(), __new_size - size(), __x);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘ncbi::CNcbiMatrix<T>::CNcbiMatrix(size_t, size_t, T) [with T = double]’ at /<<PKGBUILDDIR>>/c++/include/util/math/matrix.hpp:293:18,
inlined from ‘static ncbi::CNcbiMatrix<double>* ncbi::blast::CScorematPssmConverter::GetFreqRatios(const ncbi::objects::CPssmWithParameters&)’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/api/psiblast_aux_priv.cpp:278:73:
/usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1032 | _M_fill_insert(end(), __new_size - size(), __x);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘std::back_insert_iterator<_Container>& std::back_insert_iterator<_Container>::operator=(const typename _Container::value_type&) [with _Container = std::vector<double>]’ at /usr/include/c++/12/bits/stl_iterator.h:735:22,
inlined from ‘static _OI std::__copy_move<_IsMove, _IsSimple, _Category>::__copy_m(_II, _II, _OI) [with _II = std::_List_const_iterator<double>; _OI = std::back_insert_iterator<std::vector<double> >; bool _IsMove = false; bool _IsSimple = false; _Category = std::bidirectional_iterator_tag]’ at /usr/include/c++/12/bits/stl_algobase.h:353:16,
inlined from ‘_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = _List_const_iterator<double>; _OI = back_insert_iterator<vector<double> >]’ at /usr/include/c++/12/bits/stl_algobase.h:495:30,
inlined from ‘_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = _List_const_iterator<double>; _OI = back_insert_iterator<vector<double> >]’ at /usr/include/c++/12/bits/stl_algobase.h:522:42,
inlined from ‘_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = _List_const_iterator<double>; _OI = back_insert_iterator<vector<double> >]’ at /usr/include/c++/12/bits/stl_algobase.h:529:31,
inlined from ‘_OI std::copy(_II, _II, _OI) [with _II = _List_const_iterator<double>; _OI = back_insert_iterator<vector<double> >]’ at /usr/include/c++/12/bits/stl_algobase.h:620:7,
inlined from ‘static void ncbi::blast::CScorematPssmConverter::GetGaplessColumnWeights(const ncbi::objects::CPssmWithParameters&, std::vector<double>&)’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/api/psiblast_aux_priv.cpp:368:9:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘std::back_insert_iterator<_Container>& std::back_insert_iterator<_Container>::operator=(const typename _Container::value_type&) [with _Container = std::vector<double>]’ at /usr/include/c++/12/bits/stl_iterator.h:735:22,
inlined from ‘static _OI std::__copy_move<_IsMove, _IsSimple, _Category>::__copy_m(_II, _II, _OI) [with _II = std::_List_const_iterator<double>; _OI = std::back_insert_iterator<std::vector<double> >; bool _IsMove = false; bool _IsSimple = false; _Category = std::bidirectional_iterator_tag]’ at /usr/include/c++/12/bits/stl_algobase.h:353:16,
inlined from ‘_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = _List_const_iterator<double>; _OI = back_insert_iterator<vector<double> >]’ at /usr/include/c++/12/bits/stl_algobase.h:495:30,
inlined from ‘_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = _List_const_iterator<double>; _OI = back_insert_iterator<vector<double> >]’ at /usr/include/c++/12/bits/stl_algobase.h:522:42,
inlined from ‘_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = _List_const_iterator<double>; _OI = back_insert_iterator<vector<double> >]’ at /usr/include/c++/12/bits/stl_algobase.h:529:31,
inlined from ‘_OI std::copy(_II, _II, _OI) [with _II = _List_const_iterator<double>; _OI = back_insert_iterator<vector<double> >]’ at /usr/include/c++/12/bits/stl_algobase.h:620:7,
inlined from ‘static void ncbi::blast::CScorematPssmConverter::GetInformationContent(const ncbi::objects::CPssmWithParameters&, std::vector<double>&)’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/api/psiblast_aux_priv.cpp:349:9:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘std::back_insert_iterator<_Container>& std::back_insert_iterator<_Container>::operator=(const typename _Container::value_type&) [with _Container = std::vector<double>]’ at /usr/include/c++/12/bits/stl_iterator.h:735:22,
inlined from ‘static _OI std::__copy_move<_IsMove, _IsSimple, _Category>::__copy_m(_II, _II, _OI) [with _II = std::_List_const_iterator<double>; _OI = std::back_insert_iterator<std::vector<double> >; bool _IsMove = false; bool _IsSimple = false; _Category = std::bidirectional_iterator_tag]’ at /usr/include/c++/12/bits/stl_algobase.h:353:16,
inlined from ‘_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = _List_const_iterator<double>; _OI = back_insert_iterator<vector<double> >]’ at /usr/include/c++/12/bits/stl_algobase.h:495:30,
inlined from ‘_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = _List_const_iterator<double>; _OI = back_insert_iterator<vector<double> >]’ at /usr/include/c++/12/bits/stl_algobase.h:522:42,
inlined from ‘_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = _List_const_iterator<double>; _OI = back_insert_iterator<vector<double> >]’ at /usr/include/c++/12/bits/stl_algobase.h:529:31,
inlined from ‘_OI std::copy(_II, _II, _OI) [with _II = _List_const_iterator<double>; _OI = back_insert_iterator<vector<double> >]’ at /usr/include/c++/12/bits/stl_algobase.h:620:7,
inlined from ‘static void ncbi::blast::CScorematPssmConverter::GetSigma(const ncbi::objects::CPssmWithParameters&, std::vector<double>&)’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/api/psiblast_aux_priv.cpp:384:9:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In function ‘void ncbi::blast::s_AdjustFrequencyRatiosMatrixToMatchScoreMatrix(ncbi::objects::CPssmWithParameters&)’,
inlined from ‘void ncbi::blast::PsiBlastComputePssmScores(ncbi::CRef<ncbi::objects::CPssmWithParameters>, const CBlastOptions&)’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/api/psiblast_aux_priv.cpp:490:56:
/<<PKGBUILDDIR>>/c++/src/algo/blast/api/psiblast_aux_priv.cpp:459:31: note: parameter passing for argument of type ‘std::__cxx11::list<double>::const_iterator’ changed in GCC 7.1
459 | freq_ratios.insert(itr, diff, 0.0);
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/qualifiers.cpp:52:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/qualifiers.cpp:34:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:49,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/qualifiers.cpp:56:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:322:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
322 | auto_ptr<CPacked_seqpnt> m_pOpticalMapPointsDestroyer;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:479:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
479 | auto_ptr<SAnnotSelector> m_Selector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/format/qualifiers.cpp: In member function ‘virtual void ncbi::objects::CFlatSeqIdQVal::Format(ncbi::objects::TFlatQuals&, const ncbi::CTempString&, ncbi::objects::CBioseqContext&, ncbi::objects::IFlatQVal::TFlags) const’:
/<<PKGBUILDDIR>>/c++/src/objtools/format/qualifiers.cpp:1108:10: warning: unused variable ‘bHtml’ [-Wunused-variable]
1108 | bool bHtml = ctx.Config().DoHTML();
| ^~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options_handle.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_prot_options.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_advprot_options.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/blast_advprot_options.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/scoremat/PssmWithParameters_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/scoremat/PssmWithParameters.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/format/items/sequence_item.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/embl_gather.cpp:49:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/embl_gather.cpp:34:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options_handle.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_prot_options.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_advprot_options.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blastp_kmer_options.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/blastp_kmer_options.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/scoremat/PssmWithParameters_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/scoremat/PssmWithParameters.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:49,
from /<<PKGBUILDDIR>>/c++/include/objtools/format/gather_items.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/embl_gather.cpp:52:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:322:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
322 | auto_ptr<CPacked_seqpnt> m_pOpticalMapPointsDestroyer;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:479:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
479 | auto_ptr<SAnnotSelector> m_Selector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/msa_pssm_input.cpp -o msa_pssm_input.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/psiblast_aux_priv.cpp -o psiblast_aux_priv.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/blast_aux_priv.cpp -o blast_aux_priv.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/blast_advprot_options.cpp -o blast_advprot_options.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/blastp_kmer_options.cpp -o blastp_kmer_options.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/version.cpp -o version.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -WerrIn file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/context.cpp:51:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/context.cpp:35:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/gather_items.cpp:63:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/gather_items.cpp:35:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
ile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/format/tsa_item.cpp -o tsa_item.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/format/flat_seqloc.cpp -o flat_seqloc.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/format/qualifiers.cpp -o qualifiers.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/format/context.cpp -o context.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/format/gather_items.cpp -o gather_items.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/format/embl_gather.cpp -o embl_gather.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:54,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/context.cpp:56:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objtools/format/context.cpp:64:
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:322:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
322 | auto_ptr<CPacked_seqpnt> m_pOpticalMapPointsDestroyer;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:479:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
479 | auto_ptr<SAnnotSelector> m_Selector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:54,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/gather_items.cpp:73:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/format/gather_items.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/gather_items.cpp:100:
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:322:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
322 | auto_ptr<CPacked_seqpnt> m_pOpticalMapPointsDestroyer;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:479:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
479 | auto_ptr<SAnnotSelector> m_Selector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objtools/format/gather_items.cpp:101:
/<<PKGBUILDDIR>>/c++/include/objtools/format/gather_iter.hpp:78:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
78 | auto_ptr<CBioseq_CI> m_BioseqIter;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/format/gather_items.cpp: In member function ‘void ncbi::objects::CFlatGatherer::x_SubtractFromFocus(TSourceFeatSet&) const’:
/<<PKGBUILDDIR>>/c++/src/objtools/format/gather_items.cpp:2144:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
2144 | auto_ptr<CSeq_loc> copyOfOriginalSeqLocOfFocus( new CSeq_loc() );
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/sseqloc.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/dust_filter.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/dust_filter.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/seqloc/Seq_loc_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/seqloc/Seq_loc.hpp:44,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/dust_filter.hpp:38:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/dust_filter.hpp:41:
/<<PKGBUILDDIR>>/c++/include/algo/dustmask/symdust.hpp:159:14: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
159 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq );
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/dustmask/symdust.hpp:168:14: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
168 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/format/gather_items.cpp: At global scope:
/<<PKGBUILDDIR>>/c++/src/objtools/format/gather_items.cpp:971:13: warning: ‘bool ncbi::objects::s_NsAreGaps(const CBioseq_Handle&, CBioseqContext&)’ defined but not used [-Wunused-function]
971 | static bool s_NsAreGaps(const CBioseq_Handle& seq, CBioseqContext& ctx)
| ^~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:54,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/dust_filter.cpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_types_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/feat_ci.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:50,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/genbank_gather.cpp:40:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/genbank_gather.cpp:34:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:54:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbitime.hpp:65,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_system.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbifile.hpp:53,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/rps_aux.cpp:35:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘ncbi::CRef<ncbi::blast::CBlastRPSAuxInfo> ncbi::blast::CRpsAuxFile::x_ReadFromFile(ncbi::CNcbiIfstream&)’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/api/rps_aux.cpp:220:26:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/flat_file_generator.cpp:41:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/flat_file_generator.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:54,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/flat_file_generator.cpp:44:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/format/flat_file_generator.hpp:40,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/flat_file_generator.cpp:50:
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:322:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
322 | auto_ptr<CPacked_seqpnt> m_pOpticalMapPointsDestroyer;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:479:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
479 | auto_ptr<SAnnotSelector> m_Selector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/format/gather_items.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/genbank_gather.cpp:66:
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:322:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
322 | auto_ptr<CPacked_seqpnt> m_pOpticalMapPointsDestroyer;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:479:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
479 | auto_ptr<SAnnotSelector> m_Selector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/format/genbank_gather.cpp -o genbank_gather.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/format/flat_file_generator.cpp -o flat_file_generator.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/format/item_formatter.cpp -o item_formatter.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/format/embl_formatter.cpp -o embl_formatter.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/format/genbank_formatter.cpp -o genbank_formatter.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/format/format_item_ostream.cpp -o format_item_ostream.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/format/item_ostream.cpp -o item_ostream.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/ncbi-blastIn file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/mapped_feat.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/feature.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:48,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/origin_item.cpp:42:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/origin_item.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/mapped_feat.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/feature.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:48,
from /<<PKGBUILDDIR>>/c++/include/objtools/format/item_formatter.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/objtools/format/embl_formatter.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/embl_formatter.cpp:43:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/embl_formatter.cpp:34:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:49:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:322:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
322 | auto_ptr<CPacked_seqpnt> m_pOpticalMapPointsDestroyer;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:479:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
479 | auto_ptr<SAnnotSelector> m_Selector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:49:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_types_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/feat_ci.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:50,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/item_formatter.cpp:48:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/item_formatter.cpp:34:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/query_data.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/setup_factory.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/prelim_stage.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/prelim_stage.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:322:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
322 | auto_ptr<CPacked_seqpnt> m_pOpticalMapPointsDestroyer;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:479:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
479 | auto_ptr<SAnnotSelector> m_Selector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:54:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/query_data.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/setup_factory.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/setup_factory.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_types_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/feat_ci.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:50,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/genbank_formatter.cpp:43:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/genbank_formatter.cpp:35:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/api/prelim_stage.cpp: In member function ‘virtual void ncbi::blast::CBlastPrelimSearch::SetNumberOfThreads(size_t)’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/api/prelim_stage.cpp:117:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
117 | auto_ptr<const CBlastOptionsMemento> opts_memento
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/api/prelim_stage.cpp: In member function ‘int ncbi::blast::CBlastPrelimSearch::x_LaunchMultiThreadedSearch(ncbi::blast::SInternalData&)’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/api/prelim_stage.cpp:147:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
147 | auto_ptr<const CBlastOptionsMemento> opts_memento
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/api/prelim_stage.cpp: In member function ‘ncbi::CRef<ncbi::blast::SInternalData> ncbi::blast::CBlastPrelimSearch::Run()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/api/prelim_stage.cpp:216:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
216 | auto_ptr<const CBlastOptionsMemento> opts_memento
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/api/prelim_stage.cpp: In member function ‘BlastHSPResults* ncbi::blast::CBlastPrelimSearch::ComputeBlastHSPResults(BlastHSPStream*, Uint4, bool*, std::vector<bool>*) const’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/api/prelim_stage.cpp:329:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
329 | auto_ptr<const CBlastOptionsMemento> opts_memento
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/format/item_formatter.hpp:40,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/item_formatter.cpp:51:
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:322:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
322 | auto_ptr<CPacked_seqpnt> m_pOpticalMapPointsDestroyer;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:54:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:479:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
479 | auto_ptr<SAnnotSelector> m_Selector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objtools/format/item_formatter.cpp:59:
/<<PKGBUILDDIR>>/c++/include/objtools/format/gbseq_formatter.hpp:105:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
105 | auto_ptr<CObjectOStream> m_Out;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/format/item_formatter.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/objtools/format/genbank_formatter.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/genbank_formatter.cpp:47:
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:322:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
322 | auto_ptr<CPacked_seqpnt> m_pOpticalMapPointsDestroyer;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:479:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
479 | auto_ptr<SAnnotSelector> m_Selector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/remote_blast.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/search_strategy.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/search_strategy.cpp:37:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbitime.hpp:65,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_system.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/search_strategy.cpp:35:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/format/genbank_formatter.cpp: In member function ‘virtual void ncbi::objects::CGenbankFormatter::FormatSequence(const ncbi::objects::CSequenceItem&, ncbi::objects::IFlatTextOStream&)’:
/<<PKGBUILDDIR>>/c++/src/objtools/format/genbank_formatter.cpp:2048:18: warning: catching polymorphic type ‘class ncbi::objects::CSeqVectorException’ by value [-Wcatch-value=]
2048 | } catch (CSeqVectorException) {
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/format/genbank_formatter.cpp:2089:26: warning: catching polymorphic type ‘class ncbi::objects::CSeqVectorException’ by value [-Wcatch-value=]
2089 | } catch (CSeqVectorException) {
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
743 | auto_ptr<CObjectIStream> m_ObjectStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/search_strategy.hpp:178:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
178 | auto_ptr<CImportStrategyData> m_Data;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/search_strategy.hpp:181:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
181 | auto_ptr<CBlastOptionsBuilder> m_OptionsBuilder;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/format/genbank_formatter.cpp: At global scope:
/<<PKGBUILDDIR>>/c++/src/objtools/format/genbank_formatter.cpp:281:15: warning: ‘std::string ncbi::objects::s_get_anchor_html(const std::string&, ncbi::TGi)’ defined but not used [-Wunused-function]
281 | static string s_get_anchor_html(const string & sAnchorName, TGi iGi )
| ^~~~~~~~~~~~~~~~~
or=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/dust_filter.cpp -o dust_filter.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/rps_aux.cpp -o rps_aux.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/search_strategy.cpp -o search_strategy.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/setup_factory.cpp -o setup_factory.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/prelim_stage.cpp -o prelim_stage.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/traceback_stage.cpp -o traceback_stage.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREA/<<PKGBUILDDIR>>/c++/src/objtools/align_format/showdefline.cpp: In member function ‘ncbi::align_format::CShowBlastDefline::SScoreInfo* ncbi::align_format::CShowBlastDefline::x_GetScoreInfo(const ncbi::objects::CSeq_align&, int)’:
/<<PKGBUILDDIR>>/c++/src/objtools/align_format/showdefline.cpp:1465:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1465 | auto_ptr<SScoreInfo> score_info(new SScoreInfo);
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/align_format/showdefline.cpp: In member function ‘ncbi::align_format::CShowBlastDefline::SScoreInfo* ncbi::align_format::CShowBlastDefline::x_GetScoreInfoForTable(const ncbi::objects::CSeq_align_set&, int)’:
/<<PKGBUILDDIR>>/c++/src/objtools/align_format/showdefline.cpp:1489:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1489 | auto_ptr<SScoreInfo> score_info(new SScoreInfo);
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/align_format/showdefline.cpp:1491:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1491 | auto_ptr<CAlignFormatUtil::SSeqAlignSetCalcParams> seqSetInfo( CAlignFormatUtil::GetSeqAlignSetCalcParamsFromASN(aln));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_types_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/feat_ci.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/format/items/feature_item.hpp:41,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/ftable_gather.cpp:40:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/ftable_gather.cpp:34:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/mapped_feat.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/feature.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:48,
from /<<PKGBUILDDIR>>/c++/include/objtools/format/item_formatter.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/objtools/format/ftable_formatter.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/ftable_formatter.cpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/ftable_formatter.cpp:34:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:49:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:49,
from /<<PKGBUILDDIR>>/c++/include/objtools/format/gather_items.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/ftable_gather.cpp:41:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:322:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
322 | auto_ptr<CPacked_seqpnt> m_pOpticalMapPointsDestroyer;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:479:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
479 | auto_ptr<SAnnotSelector> m_Selector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:322:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
322 | auto_ptr<CPacked_seqpnt> m_pOpticalMapPointsDestroyer;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:479:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
479 | auto_ptr<SAnnotSelector> m_Selector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objtools/format/ftable_formatter.cpp:40:
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/query_data.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/setup_factory.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/traceback_stage.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/traceback_stage.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_results.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/uniform_search.hpp:40,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/uniform_search.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_types.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/uniform_search.hpp:39:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/format/ostream_text_ostream.cpp -o ostream_text_ostream.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/format/origin_item.cpp -o origin_item.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/format/ftable_gather.cpp -o ftable_gather.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/format/ftable_formatter.cpp -o ftable_formatter.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/format/gbseq_formatter.cpp -o gbseq_formatter.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/format/flat_file_config.cpp -o flat_file_config.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -/<<PKGBUILDDIR>>/c++/src/algo/blast/api/traceback_stage.cpp: In member function ‘ncbi::CRef<ncbi::blast::CSearchResultSet> ncbi::blast::CBlastTracebackSearch::Run()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/api/traceback_stage.cpp:226:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
226 | auto_ptr<CAutoEnvironmentVariable> omp_env;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/api/traceback_stage.cpp: In member function ‘BlastHSPResults* ncbi::blast::CBlastTracebackSearch::RunSimple()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/api/traceback_stage.cpp:329:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
329 | auto_ptr<CAutoEnvironmentVariable> omp_env;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_results.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/blast_results.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/mapped_feat.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/feature.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:48,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/alignment_item.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/alignment_item.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_types_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/feat_ci.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/format/items/feature_item.hpp:41,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/flat_file_config.cpp:45:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/format/flat_file_config.hpp:34,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/flat_file_config.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/local_search.cpp:46:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/scoremat/Pssm_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/scoremat/Pssm.hpp:44,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/local_search.cpp:38:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:49:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:322:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
322 | auto_ptr<CPacked_seqpnt> m_pOpticalMapPointsDestroyer;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_results.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/uniform_search.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/local_search.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/local_search.cpp:49:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:479:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
479 | auto_ptr<SAnnotSelector> m_Selector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/mapped_feat.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/feature.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:48,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/genome_project_item.cpp:43:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/genome_project_item.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:49:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:322:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
322 | auto_ptr<CPacked_seqpnt> m_pOpticalMapPointsDestroyer;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:479:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
479 | auto_ptr<SAnnotSelector> m_Selector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/format/genome_project_item.cpp: In member function ‘virtual void ncbi::objects::CGenomeProjectItem::x_GatherInfo(ncbi::objects::CBioseqContext&)’:
/<<PKGBUILDDIR>>/c++/src/objtools/format/genome_project_item.cpp:274:21: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
274 | auto_ptr<TFieldData::TStrs> pStrsDestroyer;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/format/genome_project_item.cpp:305:21: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
305 | auto_ptr<TFieldData::TInts> pIntsDestroyer;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_results.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/uniform_search.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/remote_search.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/remote_search.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/seqalign/Dense_diag_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/seqalign/Dense_diag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/objects/seqalign/seqalign__.hpp:1,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/remote_search.cpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/remote_search.hpp:38:
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
743 | auto_ptr<CObjectIStream> m_ObjectStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/gbseq_formatter.cpp:49:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/gbseq_formatter.cpp:33:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
D_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/uniform_search.cpp -o uniform_search.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/local_search.cpp -o local_search.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/blast_results.cpp -o blast_results.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/remote_search.cpp -o remote_search.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/query_data.cpp -o query_data.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/objmgr_query_data.cpp -o objmgr_query_data.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<BUILDDIR>>/ncbi-blastIn file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:54,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/gbseq_formatter.cpp:51:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/format/item_formatter.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/objtools/format/gbseq_formatter.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/gbseq_formatter.cpp:55:
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:322:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
322 | auto_ptr<CPacked_seqpnt> m_pOpticalMapPointsDestroyer;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:479:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
479 | auto_ptr<SAnnotSelector> m_Selector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/format/gbseq_formatter.hpp:105:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
105 | auto_ptr<CObjectOStream> m_Out;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objtools/format/gather_iter.cpp:37:
/<<PKGBUILDDIR>>/c++/include/objtools/format/gather_iter.hpp:78:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
78 | auto_ptr<CBioseq_CI> m_BioseqIter;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/format/gather_iter.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/mapped_feat.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/feature.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:48,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/html_anchor_item.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/format/items/item_base.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objtools/format/items/html_anchor_item.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/html_anchor_item.cpp:34:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options.hpp:40,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/objmgrfree_query_data.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/scoremat/PssmWithParameters_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/scoremat/PssmWithParameters.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/aln_explorer.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/alnmap.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objtools/format/cigar_formatter.hpp:40,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/sam_formatter.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/seqalign/Dense_seg_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/seqalign/Dense_seg.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/alnmap.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/query_data.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/objmgr_query_data.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/objmgr_query_data.cpp:37:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/objmgr_query_data.cpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/query_data.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/query_data.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_types_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/feat_ci.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:50,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/cigar_formatter.cpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/seqalign/Dense_seg_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/seqalign/Dense_seg.hpp:42,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/cigar_formatter.cpp:35:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_types_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/feat_ci.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:50,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/gather_iter.cpp:42:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:49:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:322:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
322 | auto_ptr<CPacked_seqpnt> m_pOpticalMapPointsDestroyer;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:479:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
479 | auto_ptr<SAnnotSelector> m_Selector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:54:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:54:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:54,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/objmgr_query_data.cpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:54,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/sam_formatter.cpp:37:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/format/gather_iter.cpp: In member function ‘bool ncbi::objects::CGather_Iter::x_AddSeqEntryToStack(const ncbi::objects::CSeq_entry_Handle&)’:
/<<PKGBUILDDIR>>/c++/src/objtools/format/gather_iter.cpp:145:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
145 | auto_ptr<CBioseq_CI> seq_iter( new CBioseq_CI(entry, mol_type, CBioseq_CI::eLevel_Mains) );
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/format/alignment_item.cpp -o alignment_item.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/format/gap_item.cpp -o gap_item.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/format/genome_project_item.cpp -o genome_project_item.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/format/sam_formatter.cpp -o sam_formatter.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/format/cigar_formatter.cpp -o cigar_formatter.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/format/gather_iter.cpp -o gather_iter.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/format/html_anchor_item.cpp -o html_anchor_item.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-formaIn file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_seqinfosrc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_seqinfosrc_aux.hpp:41,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_seqinfosrc_aux.hpp:38:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /usr/include/c++/12/bits/stl_algo.h:60,
from /usr/include/c++/12/algorithm:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:180:
/usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Distance = int; _Tp = long long int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1802 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1908 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options.hpp:40,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/scoremat/PssmWithParameters_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/scoremat/PssmWithParameters.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<long long int>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/query_data.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/effsearchspace_calc.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/effsearchspace_calc.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/effsearchspace_calc.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void ncbi::blast::GetFilteredRedundantGis(const IBlastSeqInfoSrc&, int, std::vector<long long int>&)’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp:106:26:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from ‘void ncbi::blast::GetFilteredRedundantGis(const IBlastSeqInfoSrc&, int, std::vector<long long int>&)’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp:110:6:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31,
inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from ‘void ncbi::blast::GetFilteredRedundantGis(const IBlastSeqInfoSrc&, int, std::vector<long long int>&)’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp:110:6:
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objtools/format/items/gene_finder.hpp:40,
from /<<PKGBUILDDIR>>/c++/src/objtools/format/gene_finder.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:43:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:54,
from /<<PKGBUILDDIR>>/c++/include/objtools/format/items/gene_finder.hpp:42:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/format/items/gene_finder.hpp:44:
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:322:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
322 | auto_ptr<CPacked_seqpnt> m_pOpticalMapPointsDestroyer;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/format/context.hpp:479:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
479 | auto_ptr<SAnnotSelector> m_Selector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/format/items/gene_finder.hpp:113:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
113 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/format/gene_finder.cpp:78:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
78 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/query_data.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/split_query.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/split_query_cxx.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
+-2.12.0+ds/c++/src/algo/blast/api/objmgrfree_query_data.cpp -o objmgrfree_query_data.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp -o bioseq_extract_data_priv.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/effsearchspace_calc.cpp -o effsearchspace_calc.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp -o blast_seqinfosrc_aux.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/blast_dbindex.cpp -o blast_dbindex.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/split_query_cxx.cpp -o split_query_cxx.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/split_query_aux_priv.cpp -o split_query_aux_priv.o
/usr/bin/g++ -stIn file included from /<<PKGBUILDDIR>>/c++/include/objtools/simple/simple_om.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/split_query_cxx.cpp:40:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/split_query_cxx.cpp:41:
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/api/split_query_cxx.cpp: In member function ‘void ncbi::blast::CQuerySplitter::x_ComputeQueryContextsForChunks()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/api/split_query_cxx.cpp:344:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
344 | auto_ptr<CQueryDataPerChunk> qdpc;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/query_data.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/effsearchspace_calc.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/split_query_aux_priv.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/effsearchspace_calc.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/query_data.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/split_query.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/split_query_aux_priv.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/split_query_blk.cpp:37:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/split_query_blk.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/split_query_blk.cpp:34:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<long long int>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void ncbi::blast::SplitQuery_SetEffectiveSearchSpace(ncbi::CRef<CBlastOptions>, ncbi::CRef<IQueryFactory>, ncbi::CRef<SInternalData>)’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/api/split_query_aux_priv.cpp:179:31:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_version.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_istat.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker.hpp:41,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/winmask_filter.cpp:61:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/rpsblast_local.cpp:35:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/sseqloc.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/winmask_filter.hpp:41,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/winmask_filter.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/sseqloc.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/query_data.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/setup_factory.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/prelim_stage.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/local_blast.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/rpsblast_local.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbitime.hpp:65,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_system.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbifile.hpp:53,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/rpsblast_local.cpp:34:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:54,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/winmask_filter.cpp:45:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
367 | std::auto_ptr< CComponentVersionInfo > fmt_version;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, long long int>}; _Tp = std::pair<std::__cxx11::basic_string<char>, long long int>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, long long int> >]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<std::pair<std::__cxx11::basic_string<char>, long long int> >::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/algorithm:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:180:
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<__cxx11::basic_string<char>, long long int>*, vector<pair<__cxx11::basic_string<char>, long long int> > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const pair<__cxx11::basic_string<char>, long long int>&, const pair<__cxx11::basic_string<char>, long long int>&)>]’:
/usr/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, long long int>*, std::vector<std::pair<std::__cxx11::basic_string<char>, long long int> > >’ changed in GCC 7.1
1782 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<__cxx11::basic_string<char>, long long int>*, vector<pair<__cxx11::basic_string<char>, long long int> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const pair<__cxx11::basic_string<char>, long long int>&, const pair<__cxx11::basic_string<char>, long long int>&)>]’:
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, long long int>*, std::vector<std::pair<std::__cxx11::basic_string<char>, long long int> > >’ changed in GCC 7.1
1802 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, long long int>*, std::vector<std::pair<std::__cxx11::basic_string<char>, long long int> > >’ changed in GCC 7.1
In file included from /usr/include/c++/12/bits/stl_algo.h:60:
/usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<__cxx11::basic_string<char>, long long int>*, vector<pair<__cxx11::basic_string<char>, long long int> > >; _Distance = int; _Tp = pair<__cxx11::basic_string<char>, long long int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const pair<__cxx11::basic_string<char>, long long int>&, const pair<__cxx11::basic_string<char>, long long int>&)>]’:
/usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, long long int>*, std::vector<std::pair<std::__cxx11::basic_string<char>, long long int> > >’ changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<__cxx11::basic_string<char>, long long int>*, vector<pair<__cxx11::basic_string<char>, long long int> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const pair<__cxx11::basic_string<char>, long long int>&, const pair<__cxx11::basic_string<char>, long long int>&)>]’:
/usr/include/c++/12/bits/stl_heap.h:340:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, long long int>*, std::vector<std::pair<std::__cxx11::basic_string<char>, long long int> > >’ changed in GCC 7.1
340 | __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
| ^~~~~~~~~~~
/usr/include/c++/12/bits/stl_heap.h:340:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, long long int>*, std::vector<std::pair<std::__cxx11::basic_string<char>, long long int> > >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<__cxx11::basic_string<char>, long long int>*, vector<pair<__cxx11::basic_string<char>, long long int> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const pair<__cxx11::basic_string<char>, long long int>&, const pair<__cxx11::basic_string<char>, long long int>&)>]’:
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, long long int>*, std::vector<std::pair<std::__cxx11::basic_string<char>, long long int> > >’ changed in GCC 7.1
1908 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, long long int>*, std::vector<std::pair<std::__cxx11::basic_string<char>, long long int> > >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, long long int>*, std::vector<std::pair<std::__cxx11::basic_string<char>, long long int> > >’ changed in GCC 7.1
1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<__cxx11::basic_string<char>, long long int>*, vector<pair<__cxx11::basic_string<char>, long long int> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const pair<__cxx11::basic_string<char>, long long int>&, const pair<__cxx11::basic_string<char>, long long int>&)>]’,
inlined from ‘void std::__partial_sort(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<__cxx11::basic_string<char>, long long int>*, vector<pair<__cxx11::basic_string<char>, long long int> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const pair<__cxx11::basic_string<char>, long long int>&, const pair<__cxx11::basic_string<char>, long long int>&)>]’ at /usr/include/c++/12/bits/stl_algo.h:1900:25,
inlined from ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<__cxx11::basic_string<char>, long long int>*, vector<pair<__cxx11::basic_string<char>, long long int> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const pair<__cxx11::basic_string<char>, long long int>&, const pair<__cxx11::basic_string<char>, long long int>&)>]’ at /usr/include/c++/12/bits/stl_algo.h:1916:27:
/usr/include/c++/12/bits/stl_algo.h:1629:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, long long int>*, std::vector<std::pair<std::__cxx11::basic_string<char>, long long int> > >’ changed in GCC 7.1
1629 | std::__make_heap(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, long long int>}; _Tp = std::pair<std::__cxx11::basic_string<char>, long long int>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, long long int> >]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair<std::__cxx11::basic_string<char>, long long int>; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, long long int> >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void ncbi::blast::s_MapDbToThread(std::vector<std::__cxx11::basic_string<char> >&, unsigned int)’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/api/rpsblast_local.cpp:221:14,
inlined from ‘ncbi::CRef<ncbi::blast::CSearchResultSet> ncbi::blast::CLocalRPSBlast::RunThreadedSearch()’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/api/rpsblast_local.cpp:423:21:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, long long int>*, std::vector<std::pair<std::__cxx11::basic_string<char>, long long int> > >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<__cxx11::basic_string<char>, long long int>*, vector<pair<__cxx11::basic_string<char>, long long int> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const pair<__cxx11::basic_string<char>, long long int>&, const pair<__cxx11::basic_string<char>, long long int>&)>]’,
inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<pair<__cxx11::basic_string<char>, long long int>*, vector<pair<__cxx11::basic_string<char>, long long int> > >; _Compare = bool (*)(const pair<__cxx11::basic_string<char>, long long int>&, const pair<__cxx11::basic_string<char>, long long int>&)]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18,
inlined from ‘void ncbi::blast::s_MapDbToThread(std::vector<std::__cxx11::basic_string<char> >&, unsigned int)’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/api/rpsblast_local.cpp:224:6,
inlined from ‘ncbi::CRef<ncbi::blast::CSearchResultSet> ncbi::blast::CLocalRPSBlast::RunThreadedSearch()’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/api/rpsblast_local.cpp:423:21:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, long long int>*, std::vector<std::pair<std::__cxx11::basic_string<char>, long long int> > >’ changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<__cxx11::basic_string<char>, long long int>*, vector<pair<__cxx11::basic_string<char>, long long int> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const pair<__cxx11::basic_string<char>, long long int>&, const pair<__cxx11::basic_string<char>, long long int>&)>]’,
inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<__cxx11::basic_string<char>, long long int>*, vector<pair<__cxx11::basic_string<char>, long long int> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const pair<__cxx11::basic_string<char>, long long int>&, const pair<__cxx11::basic_string<char>, long long int>&)>]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31,
inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<pair<__cxx11::basic_string<char>, long long int>*, vector<pair<__cxx11::basic_string<char>, long long int> > >; _Compare = bool (*)(const pair<__cxx11::basic_string<char>, long long int>&, const pair<__cxx11::basic_string<char>, long long int>&)]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18,
inlined from ‘void ncbi::blast::s_MapDbToThread(std::vector<std::__cxx11::basic_string<char> >&, unsigned int)’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/api/rpsblast_local.cpp:224:6,
inlined from ‘ncbi::CRef<ncbi::blast::CSearchResultSet> ncbi::blast::CLocalRPSBlast::RunThreadedSearch()’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/api/rpsblast_local.cpp:423:21:
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, long long int>*, std::vector<std::pair<std::__cxx11::basic_string<char>, long long int> > >’ changed in GCC 7.1
1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, long long int>*, std::vector<std::pair<std::__cxx11::basic_string<char>, long long int> > >’ changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/seedtop.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/seedtop.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/seedtop.hpp:42:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
d=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/split_query_blk.cpp -o split_query_blk.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/winmask_filter.cpp -o winmask_filter.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/subj_ranges_set.cpp -o subj_ranges_set.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/rpsblast_local.cpp -o rpsblast_local.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/seedtop.cpp -o seedtop.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/cdd_pssm_input.cpp -o cdd_pssm_input.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.speIn file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options_handle.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_prot_options.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_advprot_options.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/psiblast_options.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/deltablast_options.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/deltablast_options.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/scoremat/PssmWithParameters_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/scoremat/PssmWithParameters.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/cdd_pssm_input.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/cdd_pssm_input.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/cdd_pssm_input.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/query_data.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/setup_factory.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/psiblast.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/deltablast.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = PSICdMsaCellData; _Alloc = std::allocator<PSICdMsaCellData>]’:
/usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector<PSICdMsaCellData>::iterator’ changed in GCC 7.1
523 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = PSICdMsaCellData; _Alloc = std::allocator<PSICdMsaCellData>]’,
inlined from ‘void ncbi::blast::CCddInputData::CHitSegment::FillData(int, const ncbi::blast::CBlastRPSInfo&)’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/api/cdd_pssm_input.cpp:759:21:
/usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PSICdMsaCellData*, std::vector<PSICdMsaCellData> >’ changed in GCC 7.1
1032 | _M_fill_insert(end(), __new_size - size(), __x);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options_handle.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/magicblast_options.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/magicblast_options.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/scoremat/PssmWithParameters_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/scoremat/PssmWithParameters.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/blast_node.cpp:35:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/query_data.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/setup_factory.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/prelim_stage.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/magicblast.cpp:37:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/general/User_object_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/general/User_object.hpp:42,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/magicblast.cpp:35:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/remote_blast.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/blast_node.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiargs.hpp:84,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp_api.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:42:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
743 | auto_ptr<CObjectIStream> m_ObjectStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/api/blast_node.cpp:37:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/mod_reader.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/<<PKGBUILDDIR>>/c++/src/algo/blast/api/blast_node.cpp: In member function ‘bool ncbi::blast::CBlastMasterNode::Processing()’:
/<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:197:8: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
197 | do if (NCBI_NS_NCBI::IsVisibleDiagPostLevel(NCBI_NS_NCBI::eDiag_##severity)) \
| ^~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:200:28: note: in expansion of macro ‘SEVERITY_POST’
200 | #define INFO_POST(message) SEVERITY_POST(Info, message)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/api/blast_node.cpp:179:65: note: in expansion of macro ‘INFO_POST’
179 | INFO_POST("Starting Chunk # " << chunk_num << " " << n->GetNodeIdStr());
| ^~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:198:44: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
198 | ERR_POST(severity << message); while(0)
| ^~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:200:28: note: in expansion of macro ‘SEVERITY_POST’
200 | #define INFO_POST(message) SEVERITY_POST(Info, message)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/api/blast_node.cpp:179:65: note: in expansion of macro ‘INFO_POST’
179 | INFO_POST("Starting Chunk # " << chunk_num << " " << n->GetNodeIdStr());
| ^~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:197:8: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
197 | do if (NCBI_NS_NCBI::IsVisibleDiagPostLevel(NCBI_NS_NCBI::eDiag_##severity)) \
| ^~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:200:28: note: in expansion of macro ‘SEVERITY_POST’
200 | #define INFO_POST(message) SEVERITY_POST(Info, message)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/api/blast_node.cpp:202:49: note: in expansion of macro ‘INFO_POST’
202 | INFO_POST("Chunk #" << chunk_num << " completed in " << s.AsSmartString());
| ^~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:198:44: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
198 | ERR_POST(severity << message); while(0)
| ^~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:200:28: note: in expansion of macro ‘SEVERITY_POST’
200 | #define INFO_POST(message) SEVERITY_POST(Info, message)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/api/blast_node.cpp:202:49: note: in expansion of macro ‘INFO_POST’
202 | INFO_POST("Chunk #" << chunk_num << " completed in " << s.AsSmartString());
| ^~~~~~~~~
t-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/format/inst_info_map.cpp -o inst_info_map.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/format/gene_finder.cpp -o gene_finder.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/format/flat_qual_slots.cpp -o flat_qual_slots.o
/bin/rm -f libxformat.so .libxformat.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libxformat.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC accession_item.o basecount_item.o comment_item.o contig_item.o date_item.o dbsource_item.o defline_item.o feature_item.o genome_item.o ctrl_items.o keywords_item.o locus_item.o primary_item.o reference_item.o segment_item.o sequence_item.o source_item.o version_item.o wgs_item.o tsa_item.o flat_seqloc.o qualifiers.o context.o gather_items.o embl_gather.o genbank_gather.o flat_file_generator.o item_formatter.o embl_formatter.o genbank_formatter.o format_item_ostream.o item_ostream.o ostream_text_ostream.o origin_item.o ftable_gather.o ftable_formatter.o gbseq_formatter.o flat_file_config.o alignment_item.o gap_item.o genome_project_item.o sam_formatter.o cigar_formatter.o gather_iter.o html_anchor_item.o inst_info_map.o gene_finder.o flat_qual_slots.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lxcleanup -lvalid -lgbseq -lmlacli -lmla -lmedlars -lpubmed -lsubmit -lxalnmgr -lxobjutil -ltaxon3 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxformat.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libxformat.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libxformat.so
/bin/ln -f .xformat.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.xformat.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/format'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/format'
In file included from /<<PKGBUILDDIR>>/c++/src/objtools/align_format/showalign.cpp:50:
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/alnmatch.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/alnmix.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/align_format/showalign.cpp:70:
/<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/alnseq.hpp:216:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
216 | auto_ptr<CAlnMixStarts> m_Starts;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/align_format/showalign.cpp: In member function ‘virtual void ncbi::align_format::CDisplaySeqalign::x_DisplayRowData(SAlnRowInfo*, ncbi::CNcbiOstream&)’:
/<<PKGBUILDDIR>>/c++/src/objtools/align_format/showalign.cpp:1451:69: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
1451 | if(m_QueryAnchoredSetIndex != -1 && m_QueryAnchoredSetIndex != rowSetsCount) {
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/align_format/showalign.cpp: In member function ‘void ncbi::align_format::CDisplaySeqalign::DisplaySeqalign(ncbi::CNcbiOstream&)’:
/<<PKGBUILDDIR>>/c++/src/objtools/align_format/showalign.cpp:1926:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1926 | auto_ptr<CObjectOStream> out2(CObjectOStream::Open(eSerial_AsnText, out));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/align_format/showalign.cpp:2104:33: warning: catching polymorphic type ‘class ncbi::CException’ by value [-Wcatch-value=]
2104 | } catch (CException e){
| ^
/<<PKGBUILDDIR>>/c++/src/objtools/align_format/showalign.cpp: In function ‘void ncbi::align_format::s_MakeDomainString(int, int, const std::string&, std::string&)’:
/<<PKGBUILDDIR>>/c++/src/objtools/align_format/showalign.cpp:4450:49: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
4450 | for (int i = actual_first_pos, j = 0; i < domain_string.size() - 1 && j < domain_name.size(); i ++, j ++){
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/align_format/showalign.cpp:4450:81: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
4450 | for (int i = actual_first_pos, j = 0; i < domain_string.size() - 1 && j < domain_name.size(); i ++, j ++){
| ~~^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbithr_conf.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimtx.hpp:62,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbireg.hpp:49,
from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:32:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const ncbi::align_format::CAlignFormatUtil::SDbInfo&}; _Tp = ncbi::align_format::CAlignFormatUtil::SDbInfo; _Alloc = std::allocator<ncbi::align_format::CAlignFormatUtil::SDbInfo>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<ncbi::align_format::CAlignFormatUtil::SDbInfo>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
cs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/deltablast_options.cpp -o deltablast_options.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/deltablast.cpp -o deltablast.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/magicblast_options.cpp -o magicblast_options.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/magicblast.cpp -o magicblast.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/blast_node.cpp -o blast_node.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/api/blast_usage_report.cpp -o blast_usage_report.o
/bin/rm -f libxblast.so .libxblast.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libxblast.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC blast_aux.o blast_options_cxx.o blast_options_local_priv.make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/blastdb_format/unit_test'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blastdb_format_unit_test /<<PKGBUILDDIR>>/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp -o seq_writer_unit_test.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blastdb_format_unit_test /<<PKGBUILDDIR>>/c++/src/objtools/blast/blastdb_format/unit_test/seq_formatter_unit_test.cpp -o seq_formatter_unit_test.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie seq_writer_unit_test.o seq_formatter_unit_test.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -ltest_boost -lblastdb_format -lxobjutil -lseqdb -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -lm -lpthread -o blastdb_format_unit_test
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_format_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f blastdb_format_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin/blastdb_format_unit_test
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/blastdb_format/unit_test'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/blastdb_format/unit_test'
o blast_options_builder.o blast_setup_cxx.o blast_seqalign.o blast_options_handle.o blast_nucl_options.o disc_nucl_options.o blast_prot_options.o psiblast_options.o blast_rps_options.o blastx_options.o tblastx_options.o tblastn_options.o rpstblastn_options.o phiblast_nucl_options.o phiblast_prot_options.o pssm_engine.o local_blast.o remote_blast.o seqinfosrc_seqvec.o seqinfosrc_seqdb.o seqinfosrc_bioseq.o seqsrc_multiseq.o seqsrc_seqdb.o seqsrc_query_factory.o bl2seq.o blast_objmgr_tools.o repeats_filter_cxx.o blast_mtlock.o psibl2seq.o local_db_adapter.o psiblast.o psiblast_impl.o psiblast_iteration.o psi_pssm_input.o msa_pssm_input.o psiblast_aux_priv.o blast_aux_priv.o blast_advprot_options.o blastp_kmer_options.o version.o dust_filter.o rps_aux.o search_strategy.o setup_factory.o prelim_stage.o traceback_stage.o uniform_search.o local_search.o blast_results.o remote_search.o query_data.o objmgr_query_data.o objmgrfree_query_data.o bioseq_extract_data_priv.o effsearchspace_calc.o blast_seqinfosrc_aux.o blast_dbindex.o split_query_cxx.o split_query_aux_priv.o split_query_blk.o winmask_filter.o subj_ranges_set.o rpsblast_local.o seedtop.o cdd_pssm_input.o deltablast_options.o deltablast.o magicblast_options.o magicblast.o blast_node.o blast_usage_report.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lblast -lseqdb -lseqset -lseq -lgeneral -lxser -lxconnect -lsequtil -ltables -lxutil -lxncbi -llmdb -lpthread -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblast.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libxblast.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libxblast.so
/bin/ln -f .xblast.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.xblast.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/api'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/api'
cd algo/blast/proteinkmer/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=proteinkmer UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/proteinkmer'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/proteinkmer'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/proteinkmer'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/proteinkmer'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/proteinkmer'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/blast/proteinkmer TMPL=proteinkmer -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:34:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:447: warning: ignoring ‘#pragma ivdep ’ [-Wunknown-pragmas]
447 | #pragma ivdep
|
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/sseqloc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp:40,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/proteinkmer/blastkmer.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/util/sequtil/sequtil_convert.hpp:34,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/proteinkmer/blastkmer.cpp:34:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/query_data.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/proteinkmer/blastkmerindex.hpp:40,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp:91:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/proteinkmer/blastkmerindex.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp:41:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/proteinkmer/blastkmerutils.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp:46:
/<<PKGBUILDDIR>>/c++/include/algo/blast/proteinkmer/mhfile.hpp:175:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
175 | auto_ptr<CMemoryFile> m_MmappedIndex;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/proteinkmer/mhfile.hpp:178:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
178 | auto_ptr<CMemoryFile> m_MmappedData;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/proteinkmer/blastkmerutils.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/proteinkmer/blastkmerindex.hpp:44:
/<<PKGBUILDDIR>>/c++/include/algo/blast/proteinkmer/mhfile.hpp:175:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
175 | auto_ptr<CMemoryFile> m_MmappedIndex;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/proteinkmer/mhfile.hpp:178:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
178 | auto_ptr<CMemoryFile> m_MmappedData;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp: In member function ‘void ncbi::blast::CBlastKmerResults::GetTSL(ncbi::blast::TSeqLocVector&, ncbi::CRef<ncbi::objects::CScope>) const’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp:75:19: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
75 | auto_ptr<SSeqLoc> ssl(new SSeqLoc(*seqloc, *scope));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp:41,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/proteinkmer/blastkmer.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/proteinkmer/blastkmer.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/proteinkmer/blastkmerutils.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp:46:
/<<PKGBUILDDIR>>/c++/include/algo/blast/proteinkmer/mhfile.hpp:175:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
175 | auto_ptr<CMemoryFile> m_MmappedIndex;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/proteinkmer/mhfile.hpp:178:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
178 | auto_ptr<CMemoryFile> m_MmappedData;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/proteinkmer/blastkmerutils.hpp:42,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:41:
/<<PKGBUILDDIR>>/c++/include/algo/blast/proteinkmer/mhfile.hpp:175:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
175 | auto_ptr<CMemoryFile> m_MmappedIndex;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiargs.hpp:84,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp_api.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:42:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/proteinkmer/mhfile.hpp:178:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
178 | auto_ptr<CMemoryFile> m_MmappedData;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp: In function ‘void ncbi::neighbor_query(const std::vector<std::vector<unsigned int> >&, const uint64_t*, std::vector<std::set<unsigned int> >&, blast::CMinHashFile&, int, int, double, TBlastKmerPrelimScoreVector&, BlastKmerStats&, int)’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:807:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
807 | if (last_oid == *i)
| ~~~~~~~~~^~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const std::pair<ncbi::CRef<ncbi::objects::CSeq_id, ncbi::CObjectCounterLocker>, double>&}; _Tp = std::pair<ncbi::CRef<ncbi::objects::CSeq_id>, double>; _Alloc = std::allocator<std::pair<ncbi::CRef<ncbi::objects::CSeq_id>, double> >]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<std::pair<ncbi::CRef<ncbi::objects::CSeq_id>, double> >::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::pair<ncbi::CRef<ncbi::objects::CSeq_id>, double>; _Alloc = std::allocator<std::pair<ncbi::CRef<ncbi::objects::CSeq_id>, double> >]’,
inlined from ‘void ncbi::blast::CBlastKmerResults::x_InitScoreVec(ncbi::TBlastKmerPrelimScoreVector&)’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp:61:22:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<ncbi::CRef<ncbi::objects::CSeq_id>, double>*, std::vector<std::pair<ncbi::CRef<ncbi::objects::CSeq_id>, double> > >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ncbi::align_format::CAlignFormatUtil::SDbInfo; _Alloc = std::allocator<ncbi::align_format::CAlignFormatUtil::SDbInfo>]’,
inlined from ‘static void ncbi::align_format::CAlignFormatUtil::FillScanModeBlastDbInfo(std::vector<SDbInfo>&, bool, int, Int8, std::string&)’ at /<<PKGBUILDDIR>>/c++/src/objtools/align_format/align_format_util.cpp:301:18:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::align_format::CAlignFormatUtil::SDbInfo*, std::vector<ncbi::align_format::CAlignFormatUtil::SDbInfo> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ncbi::align_format::CAlignFormatUtil::SDbInfo; _Alloc = std::allocator<ncbi::align_format::CAlignFormatUtil::SDbInfo>]’,
inlined from ‘static void ncbi::align_format::CAlignFormatUtil::GetBlastDbInfo(std::vector<SDbInfo>&, const std::string&, bool, int, bool)’ at /<<PKGBUILDDIR>>/c++/src/objtools/align_format/align_format_util.cpp:345:29:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::align_format::CAlignFormatUtil::SDbInfo*, std::vector<ncbi::align_format::CAlignFormatUtil::SDbInfo> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ncbi::align_format::CAlignFormatUtil::SDbInfo; _Alloc = std::allocator<ncbi::align_format::CAlignFormatUtil::SDbInfo>]’,
inlined from ‘static void ncbi::align_format::CAlignFormatUtil::GetBlastDbInfo(std::vector<SDbInfo>&, const std::string&, bool, int, bool)’ at /<<PKGBUILDDIR>>/c++/src/objtools/align_format/align_format_util.cpp:366:29:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::align_format::CAlignFormatUtil::SDbInfo*, std::vector<ncbi::align_format::CAlignFormatUtil::SDbInfo> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/usr/include/c++/12/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator, iterator) [with _Tp = std::pair<unsigned int, double>; _Alloc = std::allocator<std::pair<unsigned int, double> >]’:
/usr/include/c++/12/bits/vector.tcc:189:5: note: parameter passing for argument of type ‘std::vector<std::pair<unsigned int, double> >::iterator’ changed in GCC 7.1
189 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc:189:5: note: parameter passing for argument of type ‘std::vector<std::pair<unsigned int, double> >::iterator’ changed in GCC 7.1
In file included from /usr/include/c++/12/algorithm:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:180:
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<unsigned int, double>*, vector<pair<unsigned int, double> > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const pair<unsigned int, double>&, const pair<unsigned int, double>&)>]’:
/usr/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<unsigned int, double>*, std::vector<std::pair<unsigned int, double> > >’ changed in GCC 7.1
1782 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<unsigned int, double>*, vector<pair<unsigned int, double> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const pair<unsigned int, double>&, const pair<unsigned int, double>&)>]’:
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<unsigned int, double>*, std::vector<std::pair<unsigned int, double> > >’ changed in GCC 7.1
1802 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<unsigned int, double>*, std::vector<std::pair<unsigned int, double> > >’ changed in GCC 7.1
In file included from /usr/include/c++/12/bits/stl_algo.h:60:
/usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<unsigned int, double>*, vector<pair<unsigned int, double> > >; _Distance = int; _Tp = pair<unsigned int, double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const pair<unsigned int, double>&, const pair<unsigned int, double>&)>]’:
/usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<unsigned int, double>*, std::vector<std::pair<unsigned int, double> > >’ changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/proteinkmer'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/algo/blast/proteinkmer/blastkmer.cpp -o blastkmer.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp -o blastkmerindex.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/algo/blast/proteinkmer/blastkmeroptions.cpp -o blastkmeroptions.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp -o blastkmerresults.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp -o blastkmerutils.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/algo/blast/proteinkmer/m/usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<unsigned int, double>*, vector<pair<unsigned int, double> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const pair<unsigned int, double>&, const pair<unsigned int, double>&)>]’:
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<unsigned int, double>*, std::vector<std::pair<unsigned int, double> > >’ changed in GCC 7.1
1908 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<unsigned int, double>*, std::vector<std::pair<unsigned int, double> > >’ changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<unsigned int, double>*, std::vector<std::pair<unsigned int, double> > >’ changed in GCC 7.1
1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<unsigned int, double>*, vector<pair<unsigned int, double> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const pair<unsigned int, double>&, const pair<unsigned int, double>&)>]’,
inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<pair<unsigned int, double>*, vector<pair<unsigned int, double> > >; _Compare = bool (*)(const pair<unsigned int, double>&, const pair<unsigned int, double>&)]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18,
inlined from ‘ncbi::CRef<ncbi::blast::CBlastKmerResultsSet> ncbi::blast::CBlastKmer::x_SearchMultipleQueries(int, int, const ncbi::SBlastKmerParameters&, uint32_t*, uint32_t*, std::vector<std::vector<int> >&, std::vector<int>)’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/proteinkmer/blastkmer.cpp:277:14:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<unsigned int, double>*, std::vector<std::pair<unsigned int, double> > >’ changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<unsigned int, double>*, vector<pair<unsigned int, double> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const pair<unsigned int, double>&, const pair<unsigned int, double>&)>]’,
inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<unsigned int, double>*, vector<pair<unsigned int, double> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const pair<unsigned int, double>&, const pair<unsigned int, double>&)>]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31,
inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<pair<unsigned int, double>*, vector<pair<unsigned int, double> > >; _Compare = bool (*)(const pair<unsigned int, double>&, const pair<unsigned int, double>&)]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18,
inlined from ‘ncbi::CRef<ncbi::blast::CBlastKmerResultsSet> ncbi::blast::CBlastKmer::x_SearchMultipleQueries(int, int, const ncbi::SBlastKmerParameters&, uint32_t*, uint32_t*, std::vector<std::vector<int> >&, std::vector<int>)’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/proteinkmer/blastkmer.cpp:277:14:
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<unsigned int, double>*, std::vector<std::pair<unsigned int, double> > >’ changed in GCC 7.1
1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<unsigned int, double>*, std::vector<std::pair<unsigned int, double> > >’ changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = std::pair<unsigned int, double>; _Alloc = std::allocator<std::pair<unsigned int, double> >]’,
inlined from ‘ncbi::CRef<ncbi::blast::CBlastKmerResultsSet> ncbi::blast::CBlastKmer::x_SearchMultipleQueries(int, int, const ncbi::SBlastKmerParameters&, uint32_t*, uint32_t*, std::vector<std::vector<int> >&, std::vector<int>)’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/proteinkmer/blastkmer.cpp:283:31:
/usr/include/c++/12/bits/stl_vector.h:1561:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<unsigned int, double>*, std::vector<std::pair<unsigned int, double> > >’ changed in GCC 7.1
1561 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = std::pair<unsigned int, double>; _Alloc = std::allocator<std::pair<unsigned int, double> >]’,
inlined from ‘ncbi::CRef<ncbi::blast::CBlastKmerResultsSet> ncbi::blast::CBlastKmer::x_SearchMultipleQueries(int, int, const ncbi::SBlastKmerParameters&, uint32_t*, uint32_t*, std::vector<std::vector<int> >&, std::vector<int>)’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/proteinkmer/blastkmer.cpp:296:34:
/usr/include/c++/12/bits/stl_vector.h:1561:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<unsigned int, double>*, std::vector<std::pair<unsigned int, double> > >’ changed in GCC 7.1
1561 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = std::pair<unsigned int, double>; _Alloc = std::allocator<std::pair<unsigned int, double> >]’,
inlined from ‘ncbi::CRef<ncbi::blast::CBlastKmerResultsSet> ncbi::blast::CBlastKmer::x_SearchMultipleQueries(int, int, const ncbi::SBlastKmerParameters&, uint32_t*, uint32_t*, std::vector<std::vector<int> >&, std::vector<int>)’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/proteinkmer/blastkmer.cpp:307:34:
/usr/include/c++/12/bits/stl_vector.h:1561:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<unsigned int, double>*, std::vector<std::pair<unsigned int, double> > >’ changed in GCC 7.1
1561 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/map:60,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:45,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/usr/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]’:
/usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator’ changed in GCC 7.1
2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair<unsigned int, double>}; _Tp = std::pair<unsigned int, double>; _Alloc = std::allocator<std::pair<unsigned int, double> >]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<std::pair<unsigned int, double> >::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/map:61:
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]’,
inlined from ‘void ncbi::neighbor_query(const std::vector<std::vector<unsigned int> >&, const uint64_t*, std::vector<std::set<unsigned int> >&, blast::CMinHashFile&, int, int, double, TBlastKmerPrelimScoreVector&, BlastKmerStats&, int)’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:838:50:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]’,
inlined from ‘void ncbi::neighbor_query(const std::vector<std::vector<unsigned int> >&, const uint64_t*, std::vector<std::set<unsigned int> >&, blast::CMinHashFile&, int, int, double, TBlastKmerPrelimScoreVector&, BlastKmerStats&, int)’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:839:27:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator’ changed in GCC 7.1
511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
512 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
513 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<unsigned int, double>}; _Tp = std::pair<unsigned int, double>; _Alloc = std::allocator<std::pair<unsigned int, double> >]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair<unsigned int, double>; _Alloc = std::allocator<std::pair<unsigned int, double> >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void ncbi::neighbor_query(const std::vector<std::vector<unsigned int> >&, const uint64_t*, std::vector<std::set<unsigned int> >&, blast::CMinHashFile&, int, int, double, TBlastKmerPrelimScoreVector&, BlastKmerStats&, int)’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:849:26:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<unsigned int, double>*, std::vector<std::pair<unsigned int, double> > >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/proteinkmer/kblastapi.cpp:34:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/proteinkmer/mhfile.cpp:84: warning: ignoring ‘#pragma ivdep ’ [-Wunknown-pragmas]
84 | #pragma ivdep
|
/<<PKGBUILDDIR>>/c++/src/algo/blast/proteinkmer/mhfile.cpp:91: warning: ignoring ‘#pragma ivdep ’ [-Wunknown-pragmas]
91 | #pragma ivdep
|
/<<PKGBUILDDIR>>/c++/src/algo/blast/proteinkmer/mhfile.cpp:98: warning: ignoring ‘#pragma ivdep ’ [-Wunknown-pragmas]
98 | #pragma ivdep
|
In file included from /<<PKGBUILDDIR>>/c++/src/algo/blast/proteinkmer/mhfile.cpp:35:
/<<PKGBUILDDIR>>/c++/include/algo/blast/proteinkmer/mhfile.hpp:175:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
175 | auto_ptr<CMemoryFile> m_MmappedIndex;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbitime.hpp:65,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_system.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbifile.hpp:53,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/proteinkmer/mhfile.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/proteinkmer/mhfile.hpp:178:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
178 | auto_ptr<CMemoryFile> m_MmappedData;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/proteinkmer/mhfile.cpp: In member function ‘void ncbi::blast::CMinHashFile::GetMinHits(int, int&, std::vector<unsigned int>&) const’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/proteinkmer/mhfile.cpp:77:25: warning: comparison of integer expressions of different signedness: ‘std::vector<unsigned int>::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
77 | if (hits.size() < numHashes)
| ~~~~~~~~~~~~^~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/algo/blast/proteinkmer/kblastapi.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiargs.hpp:84,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp_api.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:42:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_results.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/uniform_search.hpp:40,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/proteinkmer/kblastapi.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/proteinkmer/blastkmerutils.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp:46,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/proteinkmer/blastkmer.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/proteinkmer/kblastapi.cpp:50:
/<<PKGBUILDDIR>>/c++/include/algo/blast/proteinkmer/mhfile.hpp:175:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
175 | auto_ptr<CMemoryFile> m_MmappedIndex;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/proteinkmer/mhfile.hpp:178:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
178 | auto_ptr<CMemoryFile> m_MmappedData;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
hfile.cpp -o mhfile.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/algo/blast/proteinkmer/pearson.cpp -o pearson.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs /<<PKGBUILDDIR>>/c++/src/algo/blast/proteinkmer/kblastapi.cpp -o kblastapi.o
/bin/rm -f libproteinkmer.so .libproteinkmer.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libproteinkmer.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC blastkmer.o blastkmerindex.o blastkmeroptions.o blastkmerresults.o blastkmerutils.o mhfile.o pearson.o kblastapi.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lxblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libproteinkmer.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libproteinkmer.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libproteinkmer.so
/bin/ln -f .proteinkmer.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.proteinkmer.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/proteinkmer'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/proteinkmer'
cd algo/blast/igblast/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=igblast UNIX_PROJ="" sources= configurables=configurables.null
cd algo/blast/proteinkmer/unit_test/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=proteinkmer_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/igblast'
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/proteinkmer/unit_test'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=aalookup_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/proteinkmer/unit_test'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/proteinkmer/unit_test'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/proteinkmer/unit_test'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/igblast'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/proteinkmer/unit_test'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/igblast'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/igblast'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/igblast'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/blast/proteinkmer/unit_test TMPL=proteinkmer_unit_test -w -j4 --jobserver-auth=7,8 all
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/blast/igblast TMPL=igblast -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api TMPL=aalookup_unit_test -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/proteinkmer/unit_test/proteinkmer_unit_test.cpp:39:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/aalookup_unit_test.cpp:34:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/query_data.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/setup_factory.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/igblast/igblast.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/igblast/igblast.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/aalookup_unit_test.cpp:37:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/expr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:44:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/simple/simple_om.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/proteinkmer/unit_test/proteinkmer_unit_test.cpp:50:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbitime.hpp:65,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_system.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/proteinkmer/unit_test/proteinkmer_unit_test.cpp:38:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/simple/simple_om.hpp:41:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/algo/blast/igblast/igblast.cpp:37:
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
743 | auto_ptr<CObjectIStream> m_ObjectStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/aalookup_unit_test.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/algo/blast/igblast/igblast.cpp:42:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/igblast/igblast.cpp: In member function ‘void ncbi::blast::CIgBlast::x_FindDJAln(ncbi::CRef<ncbi::objects::CSeq_align_set>&, ncbi::CRef<ncbi::objects::CSeq_align_set>&, std::string, bool, ncbi::objects::ENa_strand, int, int, bool)’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/igblast/igblast.cpp:997:43: warning: comparison of integer expressions of different signedness: ‘ncbi::TSeqPos’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
997 | if ((*it)->GetSeqStart(1) > max_allowed_j_deletion) keep = false;
| ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/align_format/seqalignfilter.cpp -o seqalignfilter.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/align_format/taxFormat.cpp -o taxFormat.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/align_format/aln_printer.cpp -o aln_printer.o
/bin/rm -f libalign_format.so .libalign_format.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libalign_format.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC format_flags.o align_format_util.o showdefline.o showalign.o tabular.o vectorscreen.o seqalignfilter.o taxFormat.o aln_printer.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lxalnmgr -lncbi_xloader_genbank -lseqdb -lblast_services -lxobjread -lxobjutil -lxobjmgr -lxnetblast -lblastdb -lgene_info -ltaxon1 -lseqset -lseq -lgeneral -lxser -lxcgi -lxhtml -ltables -lxncbi -llmdb -lpthread -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libalign_format.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libalign_format.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libalign_format.so
/bin/ln -f .align_format.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.align_format.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/align_format'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/align_format'
cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=aascan_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api TMPL=aascan_unit_test -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/proteinkmer/blastkmerutils.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp:46,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/proteinkmer/blastkmer.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/proteinkmer/unit_test/proteinkmer_unit_test.cpp:56:
/<<PKGBUILDDIR>>/c++/include/algo/blast/proteinkmer/mhfile.hpp:175:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
175 | auto_ptr<CMemoryFile> m_MmappedIndex;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/proteinkmer/mhfile.hpp:178:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
178 | auto_ptr<CMemoryFile> m_MmappedData;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp:34:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/aalookup_unit_test.cpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/aalookup_unit_test.cpp: In member function ‘void AalookupTestFixture::GetSeqBlk(std::string)’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/aalookup_unit_test.cpp:99:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
99 | auto_ptr<SSeqLoc> ssl(CTestObjMgr::Instance().CreateSSeqLoc(id, eNa_strand_unknown));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp:37:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/expr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:44:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp:40:
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -I/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=aalookup_unit_test /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/aalookup_unit_test.cpp -o aalookup_unit_test.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie aalookup_unit_test.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o aalookup_unit_test
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f aalookup_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f aalookup_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin/aalookup_unit_test
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=blastdiag_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api TMPL=blastdiag_unit_test -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const std::pair<unsigned int, double>&}; _Tp = std::pair<unsigned int, double>; _Alloc = std::allocator<std::pair<unsigned int, double> >]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<std::pair<unsigned int, double> >::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastdiag_unit_test.cpp:34:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp: In constructor ‘AascanTestFixture::AascanTestFixture()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp:105:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
105 | auto_ptr<SSeqLoc> ssl
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp:140:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
140 | auto_ptr<SSeqLoc> subject_ssl
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::pair<unsigned int, double>; _Alloc = std::allocator<std::pair<unsigned int, double> >]’,
inlined from ‘void proteinkmers::KmerResults::test_method()’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/proteinkmer/unit_test/proteinkmer_unit_test.cpp:94:26:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<unsigned int, double>*, std::vector<std::pair<unsigned int, double> > >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::pair<unsigned int, double>; _Alloc = std::allocator<std::pair<unsigned int, double> >]’,
inlined from ‘void proteinkmers::KmerResultsSetPushBack::test_method()’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/proteinkmer/unit_test/proteinkmer_unit_test.cpp:228:27:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<unsigned int, double>*, std::vector<std::pair<unsigned int, double> > >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::pair<unsigned int, double>; _Alloc = std::allocator<std::pair<unsigned int, double> >]’,
inlined from ‘void proteinkmers::KmerResultsSetPushBack::test_method()’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/proteinkmer/unit_test/proteinkmer_unit_test.cpp:234:27:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<unsigned int, double>*, std::vector<std::pair<unsigned int, double> > >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/igblast'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/igblast/igblast.cpp -o igblast.o
/bin/rm -f libigblast.so .libigblast.so.stamp
/usr/bin/g++ -std=gnu++14 -shared -o libigblast.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC igblast.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxconnect -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libigblast.so /<<PKGBUILDDIR>>/c++/BUILD/lib
/bin/ln -f libigblast.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libigblast.so
/bin/ln -f .igblast.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.igblast.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/igblast'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/igblast'
cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=blastengine_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api TMPL=blastengine_unit_test -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::pair<unsigned int, double>; _Alloc = std::allocator<std::pair<unsigned int, double> >]’,
inlined from ‘void proteinkmers::KmerResultsSet::test_method()’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/proteinkmer/unit_test/proteinkmer_unit_test.cpp:143:27:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<unsigned int, double>*, std::vector<std::pair<unsigned int, double> > >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::pair<unsigned int, double>; _Alloc = std::allocator<std::pair<unsigned int, double> >]’,
inlined from ‘void proteinkmers::KmerResultsSet::test_method()’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/proteinkmer/unit_test/proteinkmer_unit_test.cpp:149:27:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<unsigned int, double>*, std::vector<std::pair<unsigned int, double> > >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:34:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/proteinkmer/unit_test'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=proteinkmer_unit_test /<<PKGBUILDDIR>>/c++/src/algo/blast/proteinkmer/unit_test/proteinkmer_unit_test.cpp -o proteinkmer_unit_test.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie proteinkmer_unit_test.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -ltest_boost -lproteinkmer -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o proteinkmer_unit_test
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f proteinkmer_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f proteinkmer_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin/proteinkmer_unit_test
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/proteinkmer/unit_test'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/proteinkmer/unit_test'
cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=blastextend_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api TMPL=blastextend_unit_test -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp:34:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blastdiag_unit_test /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastdiag_unit_test.cpp -o blastdiag_unit_test.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blastdiag_unit_test.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -llmdb -lpthread -lm -lpthread -o blastdiag_unit_test
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdiag_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f blastdiag_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin/blastdiag_unit_test
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=blastfilter_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api TMPL=blastfilter_unit_test -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:35:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -I/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=aascan_unit_test /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp -o aascan_unit_test.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie aascan_unit_test.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o aascan_unit_test
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f aascan_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f aascan_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin/aascan_unit_test
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=blasthits_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api TMPL=blasthits_unit_test -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blasthits_unit_test.cpp:34:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:37:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/expr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:44:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp:37:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/expr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:44:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:37:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/expr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:44:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:40:
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp: In member function ‘void blastengine::testBlastpPrelimSearch::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:452:29: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations]
452 | options->SetFilterString("L"); /* NCBI_FAKE_WARNING */
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options_handle.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_nucl_options.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:53:
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here
180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true);
| ^~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/../../api/blast_setup.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blasthits_unit_test.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/expr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:44:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/simple/simple_om.hpp:41,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp: In member function ‘void BlastExtend::testGapAlignment::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp:259:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
259 | auto_ptr<SSeqLoc> qsl(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp:262:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
262 | auto_ptr<SSeqLoc> ssl(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp: In member function ‘void BlastExtend::testGreedyAlignment::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp:345:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
345 | auto_ptr<SSeqLoc> qsl(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp:348:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
348 | auto_ptr<SSeqLoc> ssl(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp: In member function ‘void BlastExtend::testGreedyAlignmentWithBadStart::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp:457:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
457 | auto_ptr<SSeqLoc> qsl(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp:461:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
461 | auto_ptr<SSeqLoc> ssl(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blasthits_unit_test.cpp: In member function ‘void blasthits::BlastTargetSequence::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blasthits_unit_test.cpp:116:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
116 | auto_ptr<SSeqLoc> subj(CTestObjMgr::Instance().CreateSSeqLoc(sid));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:42:
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/../../api/dust_filter.hpp:41,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:58:
/<<PKGBUILDDIR>>/c++/include/algo/dustmask/symdust.hpp:159:14: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
159 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq );
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/dustmask/symdust.hpp:168:14: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
168 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In static member function ‘static void CBlastFilterTest::x_TestLowerCaseMaskWith(ncbi::objects::ENa_strand, bool)’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:189:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
189 | auto_ptr<SSeqLoc> qsl(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In function ‘void blastfilter::x_TestGetFilteredQueryRegions(ncbi::objects::ENa_strand)’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:333:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
333 | auto_ptr<SSeqLoc> qsl(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function ‘void blastfilter::SegFilter::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:473:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
473 | auto_ptr<SSeqLoc> qsl(CTestObjMgr::Instance().CreateSSeqLoc(id));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function ‘void blastfilter::RepeatsFilter::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:513:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
513 | auto_ptr<SSeqLoc> qsl(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function ‘void blastfilter::WindowMasker::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:575:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
575 | auto_ptr<SSeqLoc>
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function ‘void blastfilter::RepeatsFilter_OnSeqInterval::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:625:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
625 | auto_ptr<SSeqLoc> qsl(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function ‘void blastfilter::RepeatsAndDustFilter::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:707:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
707 | auto_ptr<SSeqLoc> qsl1(CTestObjMgr::Instance().CreateSSeqLoc(id1));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:712:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
712 | auto_ptr<SSeqLoc> qsl2(CTestObjMgr::Instance().CreateSSeqLoc(id2));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function ‘void blastfilter::WindowMaskerAndDustFilter::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:734:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
734 | auto_ptr<SSeqLoc> qsl1(CTestObjMgr::Instance().CreateSSeqLoc(id1));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:739:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
739 | auto_ptr<SSeqLoc> qsl2(CTestObjMgr::Instance().CreateSSeqLoc(id2));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function ‘void blastfilter::WindowMasker_OnSeqInterval::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:772:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
772 | auto_ptr<SSeqLoc>
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function ‘void blastfilter::RepeatsFilter_NoHitsFound::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:807:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
807 | auto_ptr<SSeqLoc> qsl(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function ‘void blastfilter::WindowMasker_NoHitsFound::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:822:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
822 | auto_ptr<SSeqLoc> qsl
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function ‘void blastfilter::RepeatsFilterWithMissingParameter::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:838:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
838 | auto_ptr<SSeqLoc> qsl(CTestObjMgr::Instance().CreateSSeqLoc(id));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function ‘void blastfilter::WindowMaskerWithMissingParameter::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:851:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
851 | auto_ptr<SSeqLoc> qsl(CTestObjMgr::Instance().CreateSSeqLoc(id));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function ‘void blastfilter::CombineRepeatAndLowerCaseMask::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:1135:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1135 | auto_ptr<SSeqLoc> qsl(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function ‘void blastfilter::CombineRepeatAndDustFilter::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:1178:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1178 | auto_ptr<SSeqLoc> qsl(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function ‘void blastfilter::FilterLocNuclBoth::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:1212:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1212 | auto_ptr<SSeqLoc> qsl(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function ‘void blastfilter::FilterLocNuclPlus::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:1242:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1242 | auto_ptr<SSeqLoc> qsl(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function ‘void blastfilter::FilterLocNuclMinus::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:1272:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1272 | auto_ptr<SSeqLoc> qsl(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function ‘void blastfilter::FilterLocProtein::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:1305:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1305 | auto_ptr<SSeqLoc> qsl(CTestObjMgr::Instance().CreateSSeqLoc(id));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function ‘void blastfilter::MaskProteinSequence::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:1349:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1349 | auto_ptr<SSeqLoc> qsl(CTestObjMgr::Instance().CreateSSeqLoc(id));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function ‘void blastfilter::MaskNucleotideBothStrands::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:1399:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1399 | auto_ptr<SSeqLoc> qsl(CTestObjMgr::Instance().CreateSSeqLoc(id,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function ‘void blastfilter::FilterMultipleQueriesLocNuclPlus::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:1484:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1484 | auto_ptr<SSeqLoc> qsl1(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:1487:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1487 | auto_ptr<SSeqLoc> qsl2(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:1490:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1490 | auto_ptr<SSeqLoc> qsl3(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -I/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=blastengine_unit_test /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp -o blastengine_unit_test.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blastengine_unit_test.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o blastengine_unit_test
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastengine_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f blastengine_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin/blastengine_unit_test
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=blastoptions_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api TMPL=blastoptions_unit_test -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:35:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -I/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=blastextend_unit_test /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp -o blastextend_unit_test.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blastextend_unit_test.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o blastextend_unit_test
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastextend_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f blastextend_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin/blastextend_unit_test
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=blastsetup_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api TMPL=blastsetup_unit_test -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:35:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -I/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/../../api -I/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/../../core -DNCBI_APP_BUILT_AS=blasthits_unit_test /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blasthits_unit_test.cpp -o blasthits_unit_test.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blasthits_unit_test.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o blasthits_unit_test
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f blasthits_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f blasthits_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin/blasthits_unit_test
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=gapinfo_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api TMPL=gapinfo_unit_test -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/gapinfo_unit_test.cpp:34:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbitime.hpp:65,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_system.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbifile.hpp:53,
from /<<PKGBUILDDIR>>/c++/include/util/util_misc.hpp:33,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:34:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/sseqloc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/bl2seq.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/expr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:44:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_types_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/feat_ci.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:50,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function ‘void blastoptions::RemoteOptionsTest::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:73:47: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations]
73 | BOOST_CHECK_NO_THROW(opts.SetFilterString("m L", false)); /* NCBI_FAKE_WARNING */
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:180:9: note: in definition of macro ‘BOOST_CHECK_NO_THROW_IMPL_EX’
180 | S; \
| ^
/usr/include/boost/test/tools/old/interface.hpp:147:45: note: in expansion of macro ‘BOOST_CHECK_NO_THROW_IMPL’
147 | #define BOOST_CHECK_NO_THROW( S ) BOOST_CHECK_NO_THROW_IMPL( S, CHECK )
| ^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options_handle.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/bl2seq.hpp:39:
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here
180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true);
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function ‘void blastoptions::testCalcLinkHSPCutoffs::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:334:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
334 | auto_ptr<SSeqLoc> qsl(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:337:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
337 | auto_ptr<SSeqLoc> ssl(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function ‘void blastoptions::testCalcLinkHSPCutoffsSmallDB::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:503:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
503 | auto_ptr<SSeqLoc> qsl(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:506:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
506 | auto_ptr<SSeqLoc> ssl(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function ‘void blastoptions::testCalcLinkHSPResetGapProb::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:591:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
591 | auto_ptr<SSeqLoc> qsl(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:594:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
594 | auto_ptr<SSeqLoc> ssl(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function ‘void blastoptions::testHitSavingParamNewSomeInvalidKbp::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:855:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
855 | auto_ptr<SSeqLoc> qsl1(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:858:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
858 | auto_ptr<SSeqLoc> qsl2(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:861:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
861 | auto_ptr<SSeqLoc> qsl3(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function ‘void blastoptions::testHitSavingParamNewGappedTblastnLargeSubjectSequence::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:941:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
941 | auto_ptr<SSeqLoc> qsl1(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function ‘void blastoptions::testHitSavingParamNewGappedTblastnMidsizeSubjectSequence::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1012:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1012 | auto_ptr<SSeqLoc> qsl1(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function ‘void blastoptions::testHitSavingParamUpdateMultipleCalls::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1080:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1080 | auto_ptr<SSeqLoc> qsl1(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function ‘void blastoptions::testHitSavingParamNewGappedTblastnSmallSubjectSequence::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1168:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1168 | auto_ptr<SSeqLoc> qsl1(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function ‘void blastoptions::testInitialWordParamNewSomeInvalidKbp::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1237:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1237 | auto_ptr<SSeqLoc> qsl1(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1240:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1240 | auto_ptr<SSeqLoc> qsl2(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1243:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1243 | auto_ptr<SSeqLoc> qsl3(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function ‘void blastoptions::testRemoteFilterString::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1329:28: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations]
1329 | opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here
180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true);
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1333:28: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations]
1333 | opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here
180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true);
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1338:28: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations]
1338 | opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here
180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true);
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1340:28: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations]
1340 | opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here
180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true);
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1344:28: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations]
1344 | opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here
180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true);
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1346:28: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations]
1346 | opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here
180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true);
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1350:28: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations]
1350 | opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here
180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true);
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1352:28: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations]
1352 | opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here
180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true);
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1356:28: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations]
1356 | opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here
180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true);
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1358:28: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations]
1358 | opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here
180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true);
| ^~~~~~~~~~~~~~~
In file included from /usr/include/boost/test/test_tools.hpp:45,
from /usr/include/boost/test/unit_test.hpp:18,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:68:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function ‘void blastoptions::testOptionsDeepCopy::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1397:56: warning: ‘char* ncbi::blast::CBlastOptions::GetFilterString() const’ is deprecated [-Wdeprecated-declarations]
1397 | BOOST_CHECK_EQUAL(string(optsClone->GetFilterString()), string("L;m;")); /* NCBI_FAKE_WARNING */
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here
178 | NCBI_DEPRECATED char* GetFilterString() const;
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair<long long int, unsigned int>}; _Tp = std::pair<long long int, unsigned int>; _Alloc = std::allocator<std::pair<long long int, unsigned int> >]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<std::pair<long long int, unsigned int> >::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<long long int, unsigned int>}; _Tp = std::pair<long long int, unsigned int>; _Alloc = std::allocator<std::pair<long long int, unsigned int> >]’:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, unsigned int>*, std::vector<std::pair<long long int, unsigned int> > >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/mod_reader.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:42:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/../../api/dust_filter.hpp:41,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:45:
/<<PKGBUILDDIR>>/c++/include/algo/dustmask/symdust.hpp:159:14: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
159 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq );
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/dustmask/symdust.hpp:168:14: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
168 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function ‘void BlastSetup::SetupSubjectsProt::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:485:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
485 | auto_ptr<SSeqLoc> sseqloc(CTestObjMgr::Instance().CreateSSeqLoc(id));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:490:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
490 | auto_ptr<CBlastOptionsHandle>
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function ‘void BlastSetup::SetupSubjectsProtRange::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:516:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
516 | auto_ptr<SSeqLoc> sseqloc(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:522:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
522 | auto_ptr<CBlastOptionsHandle>
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function ‘void BlastSetup::SetupSubjectsNuclPlusStrandFiltered::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:549:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
549 | auto_ptr<SSeqLoc> sl(m_Om->CreateSSeqLoc(id, kRange, kStrand));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function ‘void BlastSetup::SetupSubjectsNuclMinusStrandFiltered::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:576:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
576 | auto_ptr<SSeqLoc> sl(m_Om->CreateSSeqLoc(id, kRange, kStrand));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function ‘void BlastSetup::SetupSubjectsNuclBothStrandFiltered::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:603:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
603 | auto_ptr<SSeqLoc> sl(m_Om->CreateSSeqLoc(id, kRange, kStrand));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function ‘void BlastSetup::SetupSubjectsNuclPlusStrand::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:632:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
632 | auto_ptr<SSeqLoc> sl(m_Om->CreateSSeqLoc(id, range, kStrand));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:635:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
635 | auto_ptr<CBlastOptionsHandle>
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function ‘void BlastSetup::SetupSubjectsNuclMinusStrand::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:659:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
659 | auto_ptr<SSeqLoc> sl(m_Om->CreateSSeqLoc(id, range, kStrand));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:661:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
661 | auto_ptr<CBlastOptionsHandle>
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function ‘void BlastSetup::SetupSubjectsNuclBothStrand::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:685:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
685 | auto_ptr<SSeqLoc> sl(m_Om->CreateSSeqLoc(id, range, kStrand));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:688:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
688 | auto_ptr<CBlastOptionsHandle>
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function ‘void BlastSetup::GetSequenceNCBI4NA_NoSentinels::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:758:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
758 | auto_ptr<SSeqLoc> sl(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function ‘void BlastSetup::GetSequenceNCBI2NA::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:773:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
773 | auto_ptr<SSeqLoc> sl(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function ‘void BlastSetup::GetGapOnlySequenceNCBI2NA::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:788:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
788 | auto_ptr<SSeqLoc> sl(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function ‘void BlastSetup::GetGapInSequenceNCBI2NA::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:811:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
811 | auto_ptr<SSeqLoc> sl(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function ‘void BlastSetup::testEffSearchSpaceCalculator_Ungapped::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:952:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
952 | auto_ptr<SSeqLoc> sseqloc(CTestObjMgr::Instance().CreateSSeqLoc(id));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:957:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
957 | auto_ptr<CBlastOptionsHandle>
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function ‘void BlastSetup::testEffSearchSpaceCalculatorNoSideEffects::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:978:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
978 | auto_ptr<SSeqLoc> sseqloc(CTestObjMgr::Instance().CreateSSeqLoc(id));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:983:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
983 | auto_ptr<CBlastOptionsHandle>
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function ‘void BlastSetup::testMitochondrialGeneticCode::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:1046:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1046 | auto_ptr<SSeqLoc> sl(CTestObjMgr::Instance().CreateSSeqLoc(id,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function ‘void BlastSetup::testMainSetup::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:1071:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1071 | auto_ptr<SSeqLoc> sl(CTestObjMgr::Instance().CreateSSeqLoc(id,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function ‘void BlastSetup::testSetupWithZeroLengthSequence::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:1237:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1237 | auto_ptr<SSeqLoc> ssl1(CTestObjMgr::Instance().CreateSSeqLoc(id1, kStrand));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:1238:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1238 | auto_ptr<SSeqLoc> ssl2(CTestObjMgr::Instance().CreateEmptySSeqLoc(id2));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:1239:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1239 | auto_ptr<SSeqLoc> ssl3(CTestObjMgr::Instance().CreateSSeqLoc(id3, kStrand));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function ‘void BlastSetup::GetSubjectTranslations::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:1281:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1281 | auto_ptr<SSeqLoc> sl(CTestObjMgr::Instance().CreateSSeqLoc(id,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function ‘void BlastSetup::GetMixedFrameQuery::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:1323:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1323 | auto_ptr<SSeqLoc> sl(CTestObjMgr::Instance().CreateSSeqLoc(id,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function ‘void BlastSetup::GetMixedFrameQueryOnOneStrand::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:1362:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1362 | auto_ptr<SSeqLoc> sl(CTestObjMgr::Instance().CreateSSeqLoc(id,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=gapinfo_unit_test /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/gapinfo_unit_test.cpp -o gapinfo_unit_test.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie gapinfo_unit_test.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxconnect -lxncbi -llmdb -lpthread -lm -lpthread -o gapinfo_unit_test
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f gapinfo_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f gapinfo_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin/gapinfo_unit_test
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=gencode_singleton_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api TMPL=gencode_singleton_unit_test -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/gencode_singleton_unit_test.cpp:39:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<long long int, unsigned int>}; _Tp = std::pair<long long int, unsigned int>; _Alloc = std::allocator<std::pair<long long int, unsigned int> >]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair<long long int, unsigned int>; _Alloc = std::allocator<std::pair<long long int, unsigned int> >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void blastfilter::TSeqLocVector2Packed_seqint_TestNoIntervals::test_method()’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:416:18:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, unsigned int>*, std::vector<std::pair<long long int, unsigned int> > >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/sseqloc.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/gencode_singleton_unit_test.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/sseqloc.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=gencode_singleton_unit_test /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/gencode_singleton_unit_test.cpp -o gencode_singleton_unit_test.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie gencode_singleton_unit_test.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -llmdb -lpthread -lm -lpthread -o gencode_singleton_unit_test
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f gencode_singleton_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f gencode_singleton_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin/gencode_singleton_unit_test
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=hspfilter_besthit_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api TMPL=hspfilter_besthit_unit_test -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/hspfilter_besthit_unit_test.cpp:37:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -I/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=blastoptions_unit_test /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp -o blastoptions_unit_test.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blastoptions_unit_test.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o blastoptions_unit_test
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastoptions_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f blastoptions_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin/blastoptions_unit_test
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=hspfilter_culling_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api TMPL=hspfilter_culling_unit_test -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/hspfilter_culling_unit_test.cpp:37:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -I/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=blastfilter_unit_test /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp -o blastfilter_unit_test.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blastfilter_unit_test.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o blastfilter_unit_test
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastfilter_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f blastfilter_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin/blastfilter_unit_test
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=hspstream_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api TMPL=hspstream_unit_test -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/hspstream_unit_test.cpp:37:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=hspfilter_besthit_unit_test /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/hspfilter_besthit_unit_test.cpp -o hspfilter_besthit_unit_test.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie hspfilter_besthit_unit_test.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -llmdb -lpthread -lm -lpthread -o hspfilter_besthit_unit_test
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f hspfilter_besthit_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f hspfilter_besthit_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin/hspfilter_besthit_unit_test
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=linkhsp_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api TMPL=linkhsp_unit_test -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp:34:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=hspfilter_culling_unit_test /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/hspfilter_culling_unit_test.cpp -o hspfilter_culling_unit_test.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie hspfilter_culling_unit_test.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -llmdb -lpthread -lm -lpthread -o hspfilter_culling_unit_test
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f hspfilter_culling_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f hspfilter_culling_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin/hspfilter_culling_unit_test
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=msa2pssm_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api TMPL=msa2pssm_unit_test -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/sseqloc.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/test_objmgr.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/hspstream_unit_test.cpp:42:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/expr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:44:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/msa2pssm_unit_test.cpp:37:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp:37:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/expr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:44:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -I/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=blastsetup_unit_test /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp -o blastsetup_unit_test.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blastsetup_unit_test.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o blastsetup_unit_test
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastsetup_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f blastsetup_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin/blastsetup_unit_test
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=ntlookup_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api TMPL=ntlookup_unit_test -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/ntlookup_unit_test.cpp:34:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp:41:
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp: In member function ‘void LinkHspTestFixture::setupLinkHspInputTblastn()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp:235:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
235 | auto_ptr<SSeqLoc> qsl(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp:240:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
240 | auto_ptr<SSeqLoc> qsl(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp: In member function ‘void LinkHspTestFixture::setupLinkHspInputBlastn()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp:391:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
391 | auto_ptr<SSeqLoc> sl(CTestObjMgr::Instance().CreateSSeqLoc(seqid, range));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp: In member function ‘AllCutoffScores* LinkHspTestFixture::setupCutoffScores(bool, Int8, Uint4, Uint4, int)’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp:433:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
433 | auto_ptr<SSeqLoc> qsl(CTestObjMgr::Instance().CreateSSeqLoc(*qid,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp:438:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
438 | auto_ptr<SSeqLoc> qsl(CTestObjMgr::Instance().CreateSSeqLoc(*qid));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/msa2pssm_unit_test.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=hspstream_unit_test /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/hspstream_unit_test.cpp -o hspstream_unit_test.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=hspstream_unit_test /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/hspstream_test_util.cpp -o hspstream_test_util.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie hspstream_unit_test.o hspstream_test_util.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -llmdb -lpthread -lm -lpthread -o hspstream_unit_test
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f hspstream_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f hspstream_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin/hspstream_unit_test
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=ntscan_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api TMPL=ntscan_unit_test -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp:34:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/msa2pssm_unit_test.cpp: In member function ‘void msa2pssm::QueryNotFoundInMsa::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/msa2pssm_unit_test.cpp:55:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
55 | auto_ptr<CPsiBlastInputClustalW> pssm_input;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/ntlookup_unit_test.cpp:37:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/expr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:44:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/ntlookup_unit_test.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp:37:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/expr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:44:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/ntlookup_unit_test.cpp:40:
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/ntlookup_unit_test.cpp: In member function ‘void NtlookupTestFixture::SetUpQuery(Uint4)’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/ntlookup_unit_test.cpp:99:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
99 | auto_ptr<SSeqLoc> ssl(CTestObjMgr::Instance().CreateSSeqLoc(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=msa2pssm_unit_test /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/msa2pssm_unit_test.cpp -o msa2pssm_unit_test.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie msa2pssm_unit_test.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -llmdb -lpthread -lm -lpthread -o msa2pssm_unit_test
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f msa2pssm_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f msa2pssm_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin/msa2pssm_unit_test
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=optionshandle_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api TMPL=optionshandle_unit_test -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/optionshandle_unit_test.cpp:34:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -I/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=linkhsp_unit_test /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp -o linkhsp_unit_test.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie linkhsp_unit_test.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o linkhsp_unit_test
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f linkhsp_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f linkhsp_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin/linkhsp_unit_test
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=phiblast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api TMPL=phiblast_unit_test -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/phiblast_unit_test.cpp:34:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp:40:
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp: In member function ‘void TestFixture::SetUpQuery(Uint4, ncbi::objects::ENa_strand)’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp:127:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
127 | auto_ptr<SSeqLoc> ssl(CTestObjMgr::Instance().CreateSSeqLoc(id,strand));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp: In member function ‘void TestFixture::SetUpSubject(Uint4)’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp:197:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
197 | auto_ptr<SSeqLoc>
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options_handle.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/optionshandle_unit_test.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/expr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:44:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/phiblast_unit_test.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/expr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:44:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -I/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=ntlookup_unit_test /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/ntlookup_unit_test.cpp -o ntlookup_unit_test.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie ntlookup_unit_test.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o ntlookup_unit_test
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f ntlookup_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f ntlookup_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin/ntlookup_unit_test
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=prelimsearch_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api TMPL=prelimsearch_unit_test -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp:34:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -I/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=phiblast_unit_test /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/phiblast_unit_test.cpp -o phiblast_unit_test.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie phiblast_unit_test.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -llmdb -lpthread -lm -lpthread -o phiblast_unit_test
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f phiblast_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f phiblast_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin/phiblast_unit_test
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=psibl2seq_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api TMPL=psibl2seq_unit_test -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/psibl2seq_unit_test.cpp:34:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_results.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/uniform_search.hpp:40,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/expr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:44:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -I/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=ntscan_unit_test /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp -o ntscan_unit_test.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie ntscan_unit_test.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o ntscan_unit_test
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f ntscan_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f ntscan_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin/ntscan_unit_test
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=psiblast_iteration_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api TMPL=psiblast_iteration_unit_test -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/psiblast_iteration_unit_test.cpp:34:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:56,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp:41:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp: In member function ‘void prelimsearch::SplitNucleotideQuery::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp:144:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
144 | auto_ptr<SSeqLoc> q_ssl(CTestObjMgr::Instance().CreateSSeqLoc(q_id, kRange, kStrand));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp: In member function ‘void prelimsearch::BuildCStd_seg_blastn::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp:173:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
173 | auto_ptr<SSeqLoc> q_ssl(CTestObjMgr::Instance().CreateSSeqLoc(q_id, kRange, kStrand));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp: In member function ‘void prelimsearch::BuildCStd_seg_tblastx::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp:210:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
210 | auto_ptr<SSeqLoc> q_ssl(CTestObjMgr::Instance().CreateSSeqLoc(q_id, kRange, kStrand));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_results.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/uniform_search.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/psibl2seq.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/psibl2seq_unit_test.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/expr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:44:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/simple/simple_om.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/psibl2seq_unit_test.cpp:50:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=optionshandle_unit_test /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/optionshandle_unit_test.cpp -o optionshandle_unit_test.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie optionshandle_unit_test.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -llmdb -lpthread -lm -lpthread -o optionshandle_unit_test
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f optionshandle_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f optionshandle_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin/optionshandle_unit_test
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=pssmcreate_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -I/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=prelimsearch_unit_test /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp -o prelimsearch_unit_test.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie prelimsearch_unit_test.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o prelimsearch_unit_test
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f prelimsearch_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f prelimsearch_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin/prelimsearch_unit_test
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=pssmenginefreqratios_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api TMPL=pssmcreate_unit_test -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api TMPL=pssmenginefreqratios_unit_test -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:34:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:35:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/pssm_test_util.cpp:36:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp:34:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -I/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=psiblast_iteration_unit_test /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/psiblast_iteration_unit_test.cpp -o psiblast_iteration_unit_test.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie psiblast_iteration_unit_test.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -llmdb -lpthread -lm -lpthread -o psiblast_iteration_unit_test
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast_iteration_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f psiblast_iteration_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin/psiblast_iteration_unit_test
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=querydata_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api TMPL=querydata_unit_test -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:34:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -I/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=psibl2seq_unit_test /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/psibl2seq_unit_test.cpp -o psibl2seq_unit_test.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie psibl2seq_unit_test.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o psibl2seq_unit_test
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f psibl2seq_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f psibl2seq_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin/psibl2seq_unit_test
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=queryinfo_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api TMPL=queryinfo_unit_test -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:34:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/query_data.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/expr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:44:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:56,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/pssm_test_util.cpp:37:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/expr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:44:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/pssm_engine.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp:43:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/expr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:44:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/pssm_engine.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:58:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/expr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:44:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:64:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/expr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:44:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/simple/simple_om.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:51:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:53:
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp: In static member function ‘static void CQueryDataTestFixture::s_ObjMgr_QueryFactory_LocalDataFromTSeqLocVector(const std::vector<long long int>&)’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:520:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
520 | auto_ptr<SSeqLoc> sl(CTestObjMgr::Instance().CreateSSeqLoc(qid));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/../../api/blast_setup.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/../../api/blast_objmgr_priv.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/pssm_test_util.hpp:40,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/pssm_test_util.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:56,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp:52:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp: In member function ‘void QueryData::ObjMgr_QueryFactory_RemoteData_SingleBioseqFromTSeqLocVector::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:634:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
634 | auto_ptr<SSeqLoc> sl(CTestObjMgr::Instance().CreateSSeqLoc(qid));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:56,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:67:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:56,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:79:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp: In member function ‘void PssmEngineFreqRatios::AllZerosFreqRatios::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp:87:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
87 | auto_ptr<IPssmInputFreqRatios> pssm_input;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp:91:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
91 | auto_ptr< CNcbiMatrix<int> > pssm
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp: In member function ‘void pssmcreate_cdd::TestConvertSeqalignToCdMsa::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:511:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
511 | auto_ptr<SSeqLoc> q(CTestObjMgr::Instance().CreateSSeqLoc(*qid));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:514:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
514 | auto_ptr<CObjectIStream> in
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp: In member function ‘void pssmcreate_cdd::TestFullPssmEngineRunWithDiagnosticsRequest::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:773:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
773 | auto_ptr<CObjectIStream> in
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:781:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
781 | auto_ptr<SSeqLoc> q(CTestObjMgr::Instance().CreateSSeqLoc(*qid));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp: In member function ‘void pssmcreate_cdd::TestInternalGapsInSubject::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:914:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
914 | auto_ptr<SSeqLoc> q(CTestObjMgr::Instance().CreateSSeqLoc(*query_id));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:933:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
933 | auto_ptr< CNcbiMatrix<int> > pssm_scores(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp: In member function ‘void pssmcreate_cdd::TestNoDomainHits::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:995:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
995 | auto_ptr<SSeqLoc> q(CTestObjMgr::Instance().CreateSSeqLoc(*query_id));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:1014:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1014 | auto_ptr< CNcbiMatrix<int> > pssm_scores(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp: In static member function ‘static ncbi::CRef<ncbi::blast::CCddInputData> CPssmCddInputTest::CreatePssmInput(EType)’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:1147:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1147 | auto_ptr<SSeqLoc> q(CTestObjMgr::Instance().CreateSSeqLoc(*query_id));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:84:
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/expr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:44:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp: In member function ‘void pssmcreate::testFullPssmEngineRunWithDiagnosticsRequest::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:574:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
574 | auto_ptr<CObjectIStream> in
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:581:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
581 | auto_ptr<SSeqLoc> q(CTestObjMgr::Instance().CreateSSeqLoc(qid));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp: In member function ‘void pssmcreate::testSeqAlignToPsiBlastMultipleSequenceAlignment::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:652:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
652 | auto_ptr<SSeqLoc> q(CTestObjMgr::Instance().CreateSSeqLoc(qid));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:653:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
653 | auto_ptr<SSeqLoc> s(CTestObjMgr::Instance().CreateSSeqLoc(sid));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:668:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
668 | auto_ptr<CPsiBlastInputData> pssm_input(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp: In member function ‘void pssmcreate::testPurgeSelfHit::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:763:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
763 | auto_ptr<IPssmInputData> pssm_input
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp: In member function ‘void pssmcreate::testPurgeDuplicateHit::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:775:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
775 | auto_ptr<IPssmInputData> pssm_input
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp: In member function ‘void pssmcreate::testPurgeNearIdenticalHits::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:788:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
788 | auto_ptr<IPssmInputData> pssm_input
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp: In member function ‘void pssmcreate::testQueryAlignedWithInternalGaps::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:802:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
802 | auto_ptr<IPssmInputData> pssm_input
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:810:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
810 | auto_ptr< CNcbiMatrix<int> > pssm
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp: In member function ‘void pssmcreate::testMultiSeqAlignmentHasRegionsUnalignedToQuery::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:868:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
868 | auto_ptr<IPssmInputData> pssm_input
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp: In member function ‘void pssmcreate::testQueryIsOnlyAlignedSequenceInMsa::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:1067:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1067 | auto_ptr<IPssmInputData> pssm_input
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp: In member function ‘void pssmcreate::testRejectFlankingGaps::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:1197:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1197 | auto_ptr<IPssmInputData> bad_pssm_data(new CPssmInputFlankingGaps());
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp: In member function ‘void pssmcreate::testRejectGapInQuery::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:1203:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1203 | auto_ptr<IPssmInputData> bad_pssm_data(new CPssmInputGapsInQuery());
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp: In member function ‘void pssmcreate::testRejectQueryLength0::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:1209:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1209 | auto_ptr<IPssmInputData> bad_pssm_data(new CPssmInputQueryLength0());
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp: In member function ‘void pssmcreate::testRejectNullsReturnedByPssmInput::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:1219:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1219 | auto_ptr<IPssmInputData> bad_pssm_data(new CNullPssmInput());
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp: In member function ‘void pssmcreate::testRejectUnsupportedMatrix::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:1224:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1224 | auto_ptr<IPssmInputData> bad_pssm_data(new
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
523 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘ncbi::CNcbiMatrix<T>::CNcbiMatrix(size_t, size_t, T) [with T = double]’ at /<<PKGBUILDDIR>>/c++/include/util/math/matrix.hpp:293:18,
inlined from ‘void PssmEngineFreqRatios::AllZerosFreqRatios::test_method()’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp:85:63:
/usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1032 | _M_fill_insert(end(), __new_size - size(), __x);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_types_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/feat_ci.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:50,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:37:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp: In member function ‘void QueryInfo::ProteinGetQueryInfo::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:57:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
57 | auto_ptr<SSeqLoc> qsl(CTestObjMgr::Instance().CreateSSeqLoc(id));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp: In member function ‘void QueryInfo::EmptyBlastxGetQueryInfo::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:80:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
80 | auto_ptr<SSeqLoc> qsl(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp: In member function ‘void QueryInfo::BlastnGetQueryInfo::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:104:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
104 | auto_ptr<SSeqLoc> qsl1(CTestObjMgr::Instance().CreateSSeqLoc(id1));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:105:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
105 | auto_ptr<SSeqLoc> qsl2(CTestObjMgr::Instance().CreateSSeqLoc(id2));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp: In member function ‘void QueryInfo::BlastnGetQueryIndex::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:128:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
128 | auto_ptr<SSeqLoc> qsl1(CTestObjMgr::Instance().CreateSSeqLoc(id1));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:129:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
129 | auto_ptr<SSeqLoc> qsl2(CTestObjMgr::Instance().CreateSSeqLoc(id2));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp: In member function ‘void QueryInfo::BlastnSearchContextInfo::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:152:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
152 | auto_ptr<SSeqLoc> qsl1(CTestObjMgr::Instance().CreateSSeqLoc(id1));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:153:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
153 | auto_ptr<SSeqLoc> qsl2(CTestObjMgr::Instance().CreateSSeqLoc(id2));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp: In member function ‘void QueryInfo::BlastnSearchContextInfoSingleStrand::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:188:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
188 | auto_ptr<SSeqLoc> qsl1(CTestObjMgr::Instance().CreateSSeqLoc(id1,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:190:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
190 | auto_ptr<SSeqLoc> qsl2(CTestObjMgr::Instance().CreateSSeqLoc(id2));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = PSICdMsaCellData; _Alloc = std::allocator<PSICdMsaCellData>]’:
/usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector<PSICdMsaCellData>::iterator’ changed in GCC 7.1
523 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<long long int>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]’:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -I/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=pssmenginefreqratios_unit_test /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp -o pssmenginefreqratios_unit_test.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie pssmenginefreqratios_unit_test.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o pssmenginefreqratios_unit_test
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f pssmenginefreqratios_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f pssmenginefreqratios_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin/pssmenginefreqratios_unit_test
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
In file included from /usr/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = PSICdMsaCellData; _Alloc = std::allocator<PSICdMsaCellData>]’,
inlined from ‘CPssmInputWithSingleCD::CPssmInputWithSingleCD()’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:1247:21:
/usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PSICdMsaCellData*, std::vector<PSICdMsaCellData> >’ changed in GCC 7.1
1032 | _M_fill_insert(end(), __new_size - size(), __x);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=remote_blast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api TMPL=remote_blast_unit_test -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp:35:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void QueryData::ObjMgr_QueryFactory_LocalDataFromBlastQueryVector_Protein::test_method()’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:617:18:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void QueryData::ObjMgr_QueryFactory_LocalDataFromBlastQueryVector_Protein::test_method()’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:618:18:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void QueryData::ObjMgr_QueryFactory_LocalDataFromBlastQueryVector_Nucleotide::test_method()’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:624:18:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void QueryData::ObjMgr_QueryFactory_LocalDataFromBlastQueryVector_Nucleotide::test_method()’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:625:18:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void QueryData::ObjMgr_QueryFactory_LocalDataFromBlastQueryVector_Nucleotide::test_method()’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:626:18:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void QueryData::ObjMgr_QueryFactory_LocalDataFromTSeqLocVector_Protein::test_method()’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:602:18:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void QueryData::ObjMgr_QueryFactory_LocalDataFromTSeqLocVector_Protein::test_method()’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:603:18:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void QueryData::ObjMgr_QueryFactory_LocalDataFromTSeqLocVector_Nucleotide::test_method()’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:609:18:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void QueryData::ObjMgr_QueryFactory_LocalDataFromTSeqLocVector_Nucleotide::test_method()’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:610:18:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void QueryData::ObjMgr_QueryFactory_LocalDataFromTSeqLocVector_Nucleotide::test_method()’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:611:18:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void QueryData::ObjMgrFree_QueryFactory_LocalDataFromBioseq_set_Protein::test_method()’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:679:18:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void QueryData::ObjMgrFree_QueryFactory_LocalDataFromBioseq_set_Protein::test_method()’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:680:18:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void QueryData::ObjMgrFree_QueryFactory_LocalDataFromBioseq_set_Protein::test_method()’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:681:18:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void QueryData::ObjMgrFree_QueryFactory_LocalDataFromBioseq_set_Nucleotide::test_method()’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:687:18:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void QueryData::ObjMgrFree_QueryFactory_LocalDataFromBioseq_set_Nucleotide::test_method()’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:688:18:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void QueryData::ObjMgrFree_QueryFactory_LocalDataFromBioseq_set_Nucleotide::test_method()’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:689:18:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=querydata_unit_test /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp -o querydata_unit_test.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie querydata_unit_test.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o querydata_unit_test
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f querydata_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f querydata_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin/querydata_unit_test
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=rmblast_blasthits_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api TMPL=rmblast_blasthits_unit_test -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/rmblast_blasthits_unit_test.cpp:34:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -I/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=queryinfo_unit_test /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp -o queryinfo_unit_test.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie queryinfo_unit_test.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o queryinfo_unit_test
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f queryinfo_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f queryinfo_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin/queryinfo_unit_test
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=rmblast_traceback_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api TMPL=rmblast_traceback_unit_test -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/rmblast_traceback_unit_test.cpp:34:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/remote_blast.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp:37:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/expr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:44:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
743 | auto_ptr<CObjectIStream> m_ObjectStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp:47:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -I/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/../../api -I/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/../../core -DNCBI_APP_BUILT_AS=pssmcreate_unit_test /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp -o pssmcreate_unit_test.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -I/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/../../api -I/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/../../core -DNCBI_APP_BUILT_AS=pssmcreate_unit_test /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/pssm_test_util.cpp -o pssm_test_util.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -I/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/../../api -I/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/../../core -DNCBI_APP_BUILT_AS=pssmcreate_unit_test /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp -o pssmcreate_cdd_unit_test.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie pssmcreate_unit_test.o pssm_test_util.o pssmcreate_cdd_unit_test.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o pssmcreate_unit_test
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f pssmcreate_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f pssmcreate_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin/pssmcreate_unit_test
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=rps_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api TMPL=rps_unit_test -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/mod_reader.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp:34:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp:48:
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
65 | auto_ptr<CNcbiOstream> m_FileStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp: In function ‘std::string x_Stringify(TOBJ&)’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp:108:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
108 | auto_ptr<CObjectOStream>
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp: In member function ‘void remote_blast::GetSearchStrategy_FullQuery::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp:1027:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1027 | auto_ptr<blast::SSeqLoc> sl(CTestObjMgr::Instance().CreateSSeqLoc(*id));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp: In member function ‘void remote_blast::GetSearchStrategy_QueryWithRange::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp:1088:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1088 | auto_ptr<blast::SSeqLoc> sl(CTestObjMgr::Instance().CreateSSeqLoc(*id,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/rmblast_traceback_unit_test.cpp:37:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/expr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:44:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/../../api/blast_setup.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/rmblast_blasthits_unit_test.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/expr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:44:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/rmblast_traceback_unit_test.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/rmblast_traceback_unit_test.cpp:40:
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/rmblast_traceback_unit_test.cpp: In member function ‘void traceback::testRMBlastTraceBack::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/rmblast_traceback_unit_test.cpp:184:6: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
184 | auto_ptr<SSeqLoc> qsl(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/rmblast_traceback_unit_test.cpp:187:6: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
187 | auto_ptr<SSeqLoc> ssl(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -I/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/../../api -I/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/../../core -DNCBI_APP_BUILT_AS=rmblast_blasthits_unit_test /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/rmblast_blasthits_unit_test.cpp -o rmblast_blasthits_unit_test.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie rmblast_blasthits_unit_test.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o rmblast_blasthits_unit_test
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f rmblast_blasthits_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f rmblast_blasthits_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin/rmblast_blasthits_unit_test
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=scoreblk_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api TMPL=scoreblk_unit_test -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/query_data.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/setup_factory.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/prelim_stage.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/local_blast.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp:41:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/expr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:44:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp:34:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:56,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp:51:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp: In member function ‘void RpsTestFixture::NuclSearch(ncbi::objects::ENa_strand)’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp:196:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
196 | auto_ptr<SSeqLoc> query(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp: In member function ‘void rps::WholeSequenceMatch::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp:217:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
217 | auto_ptr<SSeqLoc> query(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp: In member function ‘void rps::TestCBSFreqsNotFound::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp:317:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
317 | auto_ptr<SSeqLoc> query(CTestObjMgr::Instance().CreateSSeqLoc(id));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -I/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=rmblast_traceback_unit_test /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/rmblast_traceback_unit_test.cpp -o rmblast_traceback_unit_test.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie rmblast_traceback_unit_test.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o rmblast_traceback_unit_test
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f rmblast_traceback_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f rmblast_traceback_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin/rmblast_traceback_unit_test
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=search_strategy_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api TMPL=search_strategy_unit_test -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp:34:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_types_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/feat_ci.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:50,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp:37:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/expr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:44:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:54:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp: In member function ‘void scoreblk::GetScoreBlockNucl::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp:67:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
67 | auto_ptr<SSeqLoc> qsl(CTestObjMgr::Instance().CreateSSeqLoc(id, eNa_strand_both));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp: In member function ‘void scoreblk::GetScoreBlockProtein::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp:112:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
112 | auto_ptr<SSeqLoc> qsl(CTestObjMgr::Instance().CreateSSeqLoc(id));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp: In member function ‘void scoreblk::GetScoreBlockPHI::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp:163:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
163 | auto_ptr<SSeqLoc> qsl(CTestObjMgr::Instance().CreateSSeqLoc(id));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp: In member function ‘void scoreblk::GetScoreBlockForFullyMaskedProtein::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp:240:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
240 | auto_ptr<SSeqLoc> qsl(CTestObjMgr::Instance().CreateSSeqLoc(id, range));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -I/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=rps_unit_test /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp -o rps_unit_test.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie rps_unit_test.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o rps_unit_test
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f rps_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f rps_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin/rps_unit_test
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=seqinfosrc_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api TMPL=seqinfosrc_unit_test -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/seqinfosrc_unit_test.cpp:35:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/remote_blast.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/search_strategy.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/expr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:44:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
743 | auto_ptr<CObjectIStream> m_ObjectStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/search_strategy.hpp:178:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
178 | auto_ptr<CImportStrategyData> m_Data;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/search_strategy.hpp:181:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
181 | auto_ptr<CBlastOptionsBuilder> m_OptionsBuilder;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp:43:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp: In member function ‘void search_strategy::ExportStrategy_FullQuery::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp:285:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
285 | auto_ptr<blast::SSeqLoc> sl(CTestObjMgr::Instance().CreateSSeqLoc(*id));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp: In member function ‘void search_strategy::ExportStrategy_QueryWithRange::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp:347:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
347 | auto_ptr<blast::SSeqLoc> sl(CTestObjMgr::Instance().CreateSSeqLoc(*id,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp: In member function ‘void search_strategy::ExportStrategy_DBSoftMask::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp:553:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
553 | auto_ptr<blast::SSeqLoc> sl(CTestObjMgr::Instance().CreateSSeqLoc(*id));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_seqinfosrc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/seqinfosrc_seqvec.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/seqinfosrc_unit_test.cpp:37:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/expr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:44:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -I/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=scoreblk_unit_test /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp -o scoreblk_unit_test.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie scoreblk_unit_test.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o scoreblk_unit_test
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f scoreblk_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f scoreblk_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin/scoreblk_unit_test
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=seqsrc_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api TMPL=seqsrc_unit_test -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/seqsrc_unit_test.cpp:34:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/mockseqsrc2_unit_test.cpp:35:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/mockseqsrc1_unit_test.cpp:34:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/seqinfosrc_unit_test.cpp: In member function ‘void seqinfosrc::testSeqVecSeqInfoSrc::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/seqinfosrc_unit_test.cpp:70:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
70 | auto_ptr<SSeqLoc> sl(CTestObjMgr::Instance().CreateSSeqLoc(seqid));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/seqinfosrc_unit_test.cpp: In member function ‘void seqinfosrc::testSeqVecIndexOutOfRange::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/seqinfosrc_unit_test.cpp:91:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
91 | auto_ptr<SSeqLoc> sl(CTestObjMgr::Instance().CreateSSeqLoc(seqid));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -I/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=remote_blast_unit_test /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp -o remote_blast_unit_test.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie remote_blast_unit_test.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o remote_blast_unit_test
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f remote_blast_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f remote_blast_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin/remote_blast_unit_test
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=setupfactory_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api TMPL=setupfactory_unit_test -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp:34:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/sseqloc.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/test_objmgr.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/seqsrc_mock.cpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/util/random_gen.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/seqsrc_mock.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/seqsrc_mock.cpp:35:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/seqsrc_mock.cpp: In member function ‘void CRandomlyFailMockBlastSeqSrc::x_PopulateBLAST_SequenceBlk(BlastSeqSrcGetSeqArg*)’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/seqsrc_mock.cpp:149:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
149 | auto_ptr<blast::SSeqLoc> sl
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/mockseqsrc1_unit_test.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/expr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:44:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/mockseqsrc2_unit_test.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/expr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:44:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_types_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/feat_ci.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:50,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/seqsrc_unit_test.cpp:37:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/expr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:44:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -I/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=seqinfosrc_unit_test /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/seqinfosrc_unit_test.cpp -o seqinfosrc_unit_test.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie seqinfosrc_unit_test.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o seqinfosrc_unit_test
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqinfosrc_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f seqinfosrc_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin/seqinfosrc_unit_test
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=split_query_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api TMPL=split_query_unit_test -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:54:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp:34:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/seqsrc_unit_test.cpp: In function ‘ncbi::blast::TSeqLocVector s_getSequences()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/seqsrc_unit_test.cpp:88:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
88 | auto_ptr<SSeqLoc> sl(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/sseqloc.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/expr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:44:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp: In member function ‘void setup_factory::CreateScoreBlockBadReward::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp:72:6: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
72 | auto_ptr<const CBlastOptionsMemento> opts_memento (opts.CreateSnapshot());
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp: In member function ‘void setup_factory::CreateScoreBlockMaskedSequence::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp:88:6: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
88 | auto_ptr<SSeqLoc> ssloc(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp:101:6: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
101 | auto_ptr<const CBlastOptionsMemento> opts_memento (opts.CreateSnapshot());
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp: In member function ‘void setup_factory::CreateScoreBlockOK::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp:122:6: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
122 | auto_ptr<SSeqLoc> ssloc(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp:135:6: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
135 | auto_ptr<const CBlastOptionsMemento> opts_memento (opts.CreateSnapshot());
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -I/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=search_strategy_unit_test /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp -o search_strategy_unit_test.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie search_strategy_unit_test.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o search_strategy_unit_test
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f search_strategy_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f search_strategy_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin/search_strategy_unit_test
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=stat_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api TMPL=stat_unit_test -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/stat_unit_test.cpp:34:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/sseqloc.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/test_objmgr.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/expr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:44:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/simple/simple_om.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp:46:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -I/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=seqsrc_unit_test /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/seqsrc_unit_test.cpp -o seqsrc_unit_test.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -I/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=seqsrc_unit_test /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/seqsrc_mock.cpp -o seqsrc_mock.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -I/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=seqsrc_unit_test /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/mockseqsrc1_unit_test.cpp -o mockseqsrc1_unit_test.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -I/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=seqsrc_unit_test /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/mockseqsrc2_unit_test.cpp -o mockseqsrc2_unit_test.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie seqsrc_unit_test.o seqsrc_mock.o mockseqsrc1_unit_test.o mockseqsrc2_unit_test.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o seqsrc_unit_test
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqsrc_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f seqsrc_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin/seqsrc_unit_test
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=subj_ranges_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api TMPL=subj_ranges_unit_test -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -I/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=setupfactory_unit_test /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp -o setupfactory_unit_test.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie setupfactory_unit_test.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o setupfactory_unit_test
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f setupfactory_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f setupfactory_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin/setupfactory_unit_test
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=traceback_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/subj_ranges_unit_test.cpp:39:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api TMPL=traceback_unit_test -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:34:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -I/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=stat_unit_test /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/stat_unit_test.cpp -o stat_unit_test.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie stat_unit_test.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -llmdb -lpthread -lm -lpthread -o stat_unit_test
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f stat_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f stat_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin/stat_unit_test
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=tracebacksearch_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api TMPL=tracebacksearch_unit_test -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp:34:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:37:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/expr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:44:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/query_data.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/setup_factory.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/traceback_stage.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/expr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:44:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair<long long int, unsigned int>}; _Tp = std::pair<long long int, unsigned int>; _Alloc = std::allocator<std::pair<long long int, unsigned int> >]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<std::pair<long long int, unsigned int> >::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<long long int, unsigned int>}; _Tp = std::pair<long long int, unsigned int>; _Alloc = std::allocator<std::pair<long long int, unsigned int> >]’:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, unsigned int>*, std::vector<std::pair<long long int, unsigned int> > >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:40:
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp: In member function ‘void traceback::testBLASTNTraceBack::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:211:6: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
211 | auto_ptr<SSeqLoc> qsl(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:214:6: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
214 | auto_ptr<SSeqLoc> ssl(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:56,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp:54:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp: In member function ‘void traceback::testBLASTNTraceBackLargeXDrop::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:341:6: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
341 | auto_ptr<SSeqLoc> qsl(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:344:6: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
344 | auto_ptr<SSeqLoc> ssl(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp: In member function ‘void traceback::testBLASTPTraceBack::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:479:6: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
479 | auto_ptr<SSeqLoc> qsl(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:481:6: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
481 | auto_ptr<SSeqLoc> ssl(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp: In member function ‘void traceback::testTBLASTNTraceBack::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:603:6: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
603 | auto_ptr<SSeqLoc> qsl(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:605:6: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
605 | auto_ptr<SSeqLoc> ssl(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp: In member function ‘void traceback::testFilterBlastResults_QueryCov::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:849:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
849 | auto_ptr<SSeqLoc> qsl(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:851:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
851 | auto_ptr<SSeqLoc> ssl(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp: In member function ‘ncbi::blast::CSearchResultSet CTracebackSearchTestFixture::x_Traceback(ncbi::CSeqDBGiList*)’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp:269:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
269 | auto_ptr<SSeqLoc> sl(CTestObjMgr::Instance().CreateSSeqLoc(query));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp: In member function ‘void traceback::testFilterBlastResults_MaxHsps::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:952:6: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
952 | auto_ptr<SSeqLoc> qsl(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:955:6: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
955 | auto_ptr<SSeqLoc> ssl(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp: In member function ‘void tracebacksearch::SimpleTraceback::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp:331:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
331 | auto_ptr<SSeqLoc> sl(CTestObjMgr::Instance().CreateSSeqLoc(query));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp: In member function ‘void tracebacksearch::TracebackWithPssm_AndWarning::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp:375:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
375 | auto_ptr<SSeqLoc> sl(CTestObjMgr::Instance().CreateSSeqLoc(query));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=subj_ranges_unit_test /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/subj_ranges_unit_test.cpp -o subj_ranges_unit_test.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie subj_ranges_unit_test.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o subj_ranges_unit_test
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f subj_ranges_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f subj_ranges_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin/subj_ranges_unit_test
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=uniform_search_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api TMPL=uniform_search_unit_test -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/uniform_search_unit_test.cpp:35:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_results.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/uniform_search.hpp:40,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/uniform_search_unit_test.cpp:37:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/expr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:44:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -I/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=tracebacksearch_unit_test /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp -o tracebacksearch_unit_test.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie tracebacksearch_unit_test.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o tracebacksearch_unit_test
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f tracebacksearch_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f tracebacksearch_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin/tracebacksearch_unit_test
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=version_reference_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api TMPL=version_reference_unit_test -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/version_reference_unit_test.cpp:34:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -I/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=split_query_unit_test /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp -o split_query_unit_test.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie split_query_unit_test.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o split_query_unit_test
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f split_query_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f split_query_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin/split_query_unit_test
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
cd app/blastdb/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=convert2blastmask LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/app/blastdb TMPL=convert2blastmask -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/app/blastdb/convert2blastmask.cpp:35:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/remote_search.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/uniform_search_unit_test.cpp:39:
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
743 | auto_ptr<CObjectIStream> m_ObjectStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:56,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/uniform_search_unit_test.cpp:45:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/uniform_search_unit_test.cpp: In function ‘ncbi::blast::CSearchResultSet RunMultipleProteinSearch(ncbi::blast::ISearchFactory&, const std::string&)’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/uniform_search_unit_test.cpp:87:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
87 | auto_ptr<SSeqLoc> sl0(CTestObjMgr::Instance().CreateSSeqLoc(query_id0));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/uniform_search_unit_test.cpp:90:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
90 | auto_ptr<SSeqLoc> sl1(CTestObjMgr::Instance().CreateSSeqLoc(query_id1));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -I/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=traceback_unit_test /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp -o traceback_unit_test.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie traceback_unit_test.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o traceback_unit_test
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f traceback_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f traceback_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin/traceback_unit_test
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
cd app/segmasker/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=segmasker LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/segmasker'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/segmasker'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/segmasker'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/segmasker'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/segmasker'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/app/segmasker TMPL=segmasker -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/app/segmasker/segmasker.cpp:35:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/mod_reader.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/app/blastdb/convert2blastmask.cpp:36:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiargs.hpp:84,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp_api.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:42:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/app/blastdb/../blast/blast_app_util.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/app/blastdb/convert2blastmask.cpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {ncbi::CSeqDBGiList::SGiOid}; _Tp = ncbi::CSeqDBGiList::SGiOid; _Alloc = std::allocator<ncbi::CSeqDBGiList::SGiOid>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<ncbi::CSeqDBGiList::SGiOid>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ncbi::CSeqDBGiList::SGiOid}; _Tp = ncbi::CSeqDBGiList::SGiOid; _Alloc = std::allocator<ncbi::CSeqDBGiList::SGiOid>]’:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ncbi::CSeqDBGiList::SGiOid*, std::vector<ncbi::CSeqDBGiList::SGiOid> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_results.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/uniform_search.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:40,
from /<<PKGBUILDDIR>>/c++/src/app/blastdb/../blast/blast_app_util.hpp:40:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/mod_reader.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/app/segmasker/segmasker.cpp:44:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiargs.hpp:84,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp_api.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:42:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:46:
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
65 | auto_ptr<CNcbiOstream> m_FileStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
156 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
157 | auto_ptr<CCompressOStream> m_CompressOStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: ‘ncbi::objects::CFastaReader::fAllSeqIds’ is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations]
94 | objects::CFastaReader::fAllSeqIds |
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here
92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note)
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: ‘ncbi::objects::CFastaReader::fAllSeqIds’ is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations]
94 | objects::CFastaReader::fAllSeqIds |
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here
92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note)
| ^~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
875 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=version_reference_unit_test /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/version_reference_unit_test.cpp -o version_reference_unit_test.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie version_reference_unit_test.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -llmdb -lpthread -lm -lpthread -o version_reference_unit_test
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f version_reference_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f version_reference_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin/version_reference_unit_test
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
cd objtools/align_format/unit_test/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=align_format_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/align_format/unit_test'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/align_format/unit_test'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/align_format/unit_test'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/align_format/unit_test'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/align_format/unit_test'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/objtools/align_format/unit_test TMPL=align_format_unit_test -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp:35:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/app/segmasker/segmasker.cpp:52:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/objtools/align_format/unit_test/blast_test_util.cpp:60:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/objtools/align_format/unit_test/showalign_unit_test.cpp:48:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/cgi/cgictx.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:41,
from /<<PKGBUILDDIR>>/c++/src/objtools/align_format/unit_test/showdefline_unit_test.cpp:44:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/app/blastdb/../blast/blast_app_util.hpp:45:
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
743 | auto_ptr<CObjectIStream> m_ObjectStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blastfmtutil.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/app/blastdb/../blast/blast_app_util.hpp:50:
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
108 | auto_ptr<CMemoryFile> m_memGi2GeneFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
111 | auto_ptr<CMemoryFile> m_memGene2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
114 | auto_ptr<CMemoryFile> m_memGi2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
117 | auto_ptr<CMemoryFile> m_memGene2GiFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1554 | static auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/segmask/segmask.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/app/segmasker/segmasker.cpp:55:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blastfmtutil.hpp:41:
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
654 | auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/app/blastdb/convert2blastmask.cpp: In member function ‘virtual void CConvert2BlastMaskApplication::Init()’:
/<<PKGBUILDDIR>>/c++/src/app/blastdb/convert2blastmask.cpp:148:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
148 | auto_ptr<CArgDescriptions> arg_desc(new CArgDescriptions);
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/app/blastdb/convert2blastmask.cpp: In member function ‘virtual int CConvert2BlastMaskApplication::Run()’:
/<<PKGBUILDDIR>>/c++/src/app/blastdb/convert2blastmask.cpp:223:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
223 | auto_ptr<CMaskFromFasta> reader(x_GetReader());
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/app/blastdb/convert2blastmask.cpp:224:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
224 | auto_ptr<CMaskWriterBlastDbMaskInfo> writer(x_GetWriter());
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/app/segmasker/segmasker.cpp: In member function ‘virtual void SegMaskerApplication::Init()’:
/<<PKGBUILDDIR>>/c++/src/app/segmasker/segmasker.cpp:104:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
104 | auto_ptr<CArgDescriptions> arg_desc(new CArgDescriptions);
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/app/segmasker/segmasker.cpp: In member function ‘virtual int SegMaskerApplication::Run()’:
/<<PKGBUILDDIR>>/c++/src/app/segmasker/segmasker.cpp:225:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
225 | auto_ptr<CMaskReader> reader(x_GetReader());
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/app/segmasker/segmasker.cpp:226:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
226 | auto_ptr<CMaskWriter> writer(x_GetWriter());
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/app/segmasker/segmasker.cpp:239:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
239 | auto_ptr<CSegMasker::TMaskList> masks(masker(sequence_data));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -I/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=uniform_search_unit_test /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/uniform_search_unit_test.cpp -o uniform_search_unit_test.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie uniform_search_unit_test.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o uniform_search_unit_test
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f uniform_search_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f uniform_search_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin/uniform_search_unit_test
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/blastinput/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blastinput UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/blastinput'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/blastinput'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/blastinput'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/blastinput'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/blastinput'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput TMPL=blastinput -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp:40:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/expr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:44:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/objtools/align_format/unit_test/blast_test_util.hpp:49,
from /<<PKGBUILDDIR>>/c++/src/objtools/align_format/unit_test/blast_test_util.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/align_format/unit_test/blast_test_util.hpp:41:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_types_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/feat_ci.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:50,
from /<<PKGBUILDDIR>>/c++/src/objtools/align_format/unit_test/showdefline_unit_test.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbictype.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistre.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_stack.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/src/objtools/align_format/unit_test/showdefline_unit_test.cpp:34:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/aln_explorer.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/alnmap.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objtools/alnmgr/alnvec.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/showalign.hpp:46,
from /<<PKGBUILDDIR>>/c++/src/objtools/align_format/unit_test/showalign_unit_test.cpp:43:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbitime.hpp:65,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_system.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbifile.hpp:53,
from /<<PKGBUILDDIR>>/c++/src/objtools/align_format/unit_test/showalign_unit_test.cpp:35:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/segmasker'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=segmasker /<<PKGBUILDDIR>>/c++/src/app/segmasker/segmasker.cpp -o segmasker.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie segmasker.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lxobjsimple -lxalgosegmask -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o segmasker
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f segmasker /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f segmasker /<<PKGBUILDDIR>>/c++/BUILD/bin/segmasker
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/segmasker'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/segmasker'
cd algo/blast/format/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xblastformat UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/format'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/format'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/format'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/format'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/format'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/blast/format TMPL=xblastformat -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_vector.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/objtools/align_format/unit_test/blast_test_util.cpp:46:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/showalign.hpp:48:
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
108 | auto_ptr<CMemoryFile> m_memGi2GeneFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
111 | auto_ptr<CMemoryFile> m_memGene2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
114 | auto_ptr<CMemoryFile> m_memGi2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
117 | auto_ptr<CMemoryFile> m_memGene2GiFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp:41:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/showalign.hpp:49:
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1554 | static auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/cgi/cgictx.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:41,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:49,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/format/blast_format.cpp:37:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/cgi/cgictx.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:41,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/format/blastxml_format.cpp:45:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/cgi/cgictx.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:41,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/format/blastxml2_format.cpp:46:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/showalign.hpp:51:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
654 | auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:54:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=convert2blastmask /<<PKGBUILDDIR>>/c++/src/app/blastdb/convert2blastmask.cpp -o convert2blastmask.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie convert2blastmask.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -llmdb -lpthread -lm -lpthread -o convert2blastmask
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f convert2blastmask /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f convert2blastmask /<<PKGBUILDDIR>>/c++/BUILD/bin/convert2blastmask
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/blast_scope_src.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:45:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_loadlock.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/reader.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33,
from /<<PKGBUILDDIR>>/c++/src/objtools/align_format/unit_test/blast_test_util.cpp:49:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:40:
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
108 | auto_ptr<CMemoryFile> m_memGi2GeneFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
111 | auto_ptr<CMemoryFile> m_memGene2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
114 | auto_ptr<CMemoryFile> m_memGi2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
117 | auto_ptr<CMemoryFile> m_memGene2GiFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1554 | static auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp:42:
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
449 | auto_ptr<CNcbiIfstream> m_ConfigFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
450 | auto_ptr<CNcbiRegistry> m_Reg;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp:46:
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
108 | auto_ptr<CMemoryFile> m_memGi2GeneFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
111 | auto_ptr<CMemoryFile> m_memGene2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
114 | auto_ptr<CMemoryFile> m_memGi2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
117 | auto_ptr<CMemoryFile> m_memGene2GiFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1554 | static auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/showalign.hpp:48,
from /<<PKGBUILDDIR>>/c++/src/objtools/align_format/unit_test/blast_test_util.cpp:55:
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
108 | auto_ptr<CMemoryFile> m_memGi2GeneFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
111 | auto_ptr<CMemoryFile> m_memGene2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
114 | auto_ptr<CMemoryFile> m_memGi2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
117 | auto_ptr<CMemoryFile> m_memGene2GiFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/showalign.hpp:49:
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1554 | static auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp: In static member function ‘static void vectorscreen::CVecscreenTest::VecscreenDisplay()’:
/<<PKGBUILDDIR>>/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp:93:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
93 | auto_ptr<CObjectIStream> in(CObjectIStream::Open(eSerial_AsnText, is));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
654 | auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/algo/blast/format/blastxml_format.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:45:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/algo/blast/format/blastxml2_format.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:45:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_results.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/uniform_search.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:40,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/blast_args.cpp:41:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbitime.hpp:65,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_system.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/blast_args.cpp:39:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_types_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/feat_ci.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:50,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/blast_input.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/seqloc/Seq_loc_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/seqloc/Seq_loc.hpp:44,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/blast_input.cpp:35:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/blast_scope_src.cpp:37:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/sseqloc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:40:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:39:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_results.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blastfmtutil.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/format/blastfmtutil.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbictype.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistre.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blastfmtutil.hpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_types_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/feat_ci.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:50,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/format/blastxml_format.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blastfmtutil.hpp:39:
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
108 | auto_ptr<CMemoryFile> m_memGi2GeneFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
111 | auto_ptr<CMemoryFile> m_memGene2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
114 | auto_ptr<CMemoryFile> m_memGi2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
117 | auto_ptr<CMemoryFile> m_memGene2GiFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_types_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/feat_ci.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:50,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/format/blastxml2_format.cpp:37:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_types_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/feat_ci.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:50,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/blast_fasta_input.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/iterator.hpp:35,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/blast_fasta_input.cpp:35:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1554 | static auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:54:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:46:
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
65 | auto_ptr<CNcbiOstream> m_FileStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/showalign.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blastfmtutil.hpp:41:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
654 | auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
156 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
157 | auto_ptr<CCompressOStream> m_CompressOStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
875 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_loadlock.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/reader.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/blast_scope_src.cpp:41:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input.hpp:40,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/blast_args.cpp:51:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/tabular.hpp:41,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:47:
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
108 | auto_ptr<CMemoryFile> m_memGi2GeneFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
111 | auto_ptr<CMemoryFile> m_memGene2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
114 | auto_ptr<CMemoryFile> m_memGi2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
117 | auto_ptr<CMemoryFile> m_memGene2GiFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1554 | static auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:54:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/showalign.hpp:48,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blastxml2_format.hpp:41,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/format/blastxml2_format.cpp:44:
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
108 | auto_ptr<CMemoryFile> m_memGi2GeneFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
111 | auto_ptr<CMemoryFile> m_memGene2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
114 | auto_ptr<CMemoryFile> m_memGi2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
117 | auto_ptr<CMemoryFile> m_memGene2GiFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/showalign.hpp:49:
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1554 | static auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
654 | auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
449 | auto_ptr<CNcbiIfstream> m_ConfigFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
450 | auto_ptr<CNcbiRegistry> m_Reg;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/sseqloc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/data4xmlformat.hpp:40,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/format/data4xmlformat.cpp:37:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/seq/Seq_annot_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/seq/Seq_annot.hpp:42,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/format/data4xmlformat.cpp:35:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blastfmtutil.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/data4xmlformat.hpp:44:
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
108 | auto_ptr<CMemoryFile> m_memGi2GeneFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
111 | auto_ptr<CMemoryFile> m_memGene2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
114 | auto_ptr<CMemoryFile> m_memGi2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
117 | auto_ptr<CMemoryFile> m_memGene2GiFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1554 | static auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/showalign.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blastfmtutil.hpp:41:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
654 | auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/format/data4xmlformat.hpp: In member function ‘virtual std::string ncbi::CCmdLineBlastXMLReportData::GetFilterString() const’:
/<<PKGBUILDDIR>>/c++/include/algo/blast/format/data4xmlformat.hpp:155:38: warning: ‘char* ncbi::blast::CBlastOptions::GetFilterString() const’ is deprecated [-Wdeprecated-declarations]
155 | m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options_handle.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/uniform_search.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/data4xmlformat.hpp:42:
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here
178 | NCBI_DEPRECATED char* GetFilterString() const;
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/align_format/unit_test/showdefline_unit_test.cpp: In static member function ‘static void showdefline::CShowBlastDeflineTest::GetDeflineInfo(TestUtil::CBlastOM::ELocation)’:
/<<PKGBUILDDIR>>/c++/src/objtools/align_format/unit_test/showdefline_unit_test.cpp:74:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
74 | auto_ptr<CObjectIStream> in(CObjectIStream::Open(eSerial_AsnText, is));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/sseqloc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/data4xml2format.hpp:40,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/format/data4xml2format.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/seq/Seq_annot_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/seq/Seq_annot.hpp:42,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/format/data4xml2format.cpp:34:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blastfmtutil.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/data4xml2format.hpp:44:
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
108 | auto_ptr<CMemoryFile> m_memGi2GeneFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
111 | auto_ptr<CMemoryFile> m_memGene2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
114 | auto_ptr<CMemoryFile> m_memGi2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
117 | auto_ptr<CMemoryFile> m_memGene2GiFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1554 | static auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/showalign.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blastfmtutil.hpp:41:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
654 | auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/format/data4xml2format.hpp: In member function ‘virtual std::string ncbi::CCmdLineBlastXML2ReportData::GetFilterString() const’:
/<<PKGBUILDDIR>>/c++/include/algo/blast/format/data4xml2format.hpp:140:39: warning: ‘char* ncbi::blast::CBlastOptions::GetFilterString() const’ is deprecated [-Wdeprecated-declarations]
140 | m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options_handle.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/uniform_search.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/data4xml2format.hpp:42:
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here
178 | NCBI_DEPRECATED char* GetFilterString() const;
| ^~~~~~~~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/format'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/format/blastfmtutil.cpp -o blastfmtutil.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/format/blastxml_format.cpp -o blastxml_format.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/format/blastxml2_format.cpp -o blastxml2_format.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/format/blast_format.cpp -o blast_format.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/format/data4xmlformat.cpp -o data4xmlformat.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/format/data4xml2format.cpp -o data4xml2format.o
/<<PKGBUILDDIR>>/c++/src/objtools/align_format/unit_test/showdefline_unit_test.cpp:99:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
99 | auto_ptr<CShowBlastDefline::SScoreInfo>
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/objtools/align_format/unit_test/showdefline_unit_test.cpp:101:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
101 | auto_ptr<CShowBlastDefline::SDeflineInfo>
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/remote_blast.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/build_archive.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/format/build_archive.cpp:37:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbitime.hpp:65,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_system.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/format/build_archive.cpp:35:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
743 | auto_ptr<CObjectIStream> m_ObjectStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/algo/blast/format/build_archive.cpp:43:
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/search_strategy.hpp:178:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
178 | auto_ptr<CImportStrategyData> m_Data;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/search_strategy.hpp:181:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
181 | auto_ptr<CBlastOptionsBuilder> m_OptionsBuilder;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/cgi/cgictx.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:41,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:49,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/format/vecscreen_run.cpp:37:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/sseqloc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:40:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:39:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/tabular.hpp:41,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:47:
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
108 | auto_ptr<CMemoryFile> m_memGi2GeneFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
111 | auto_ptr<CMemoryFile> m_memGene2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
114 | auto_ptr<CMemoryFile> m_memGi2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
117 | auto_ptr<CMemoryFile> m_memGene2GiFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1554 | static auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/showalign.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:48:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
654 | auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
449 | auto_ptr<CNcbiIfstream> m_ConfigFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
450 | auto_ptr<CNcbiRegistry> m_Reg;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:46,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:53:
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
65 | auto_ptr<CNcbiOstream> m_FileStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
156 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
157 | auto_ptr<CCompressOStream> m_CompressOStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
875 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
414 | auto_ptr<CBlast_SAM_Formatter> m_SamFormatter;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objtools/format/sam_formatter.hpp:41,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/sam.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/format/sam.cpp:37:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbictype.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistre.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/format/sam_formatter.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/format/sam.cpp:39:
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
108 | auto_ptr<CMemoryFile> m_memGi2GeneFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
111 | auto_ptr<CMemoryFile> m_memGene2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
114 | auto_ptr<CMemoryFile> m_memGi2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
117 | auto_ptr<CMemoryFile> m_memGene2GiFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1554 | static auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/cgi/cgictx.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:41,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:49,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_async_format.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/format/blast_async_format.cpp:34:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/showalign.hpp:48,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blastxml_format.hpp:41,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/format/blastxml_format.cpp:43:
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
108 | auto_ptr<CMemoryFile> m_memGi2GeneFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
111 | auto_ptr<CMemoryFile> m_memGene2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
114 | auto_ptr<CMemoryFile> m_memGi2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
117 | auto_ptr<CMemoryFile> m_memGene2GiFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_async_format.hpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:45:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/sseqloc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_async_format.hpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/mod_reader.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_async_format.hpp:40:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/tabular.hpp:41,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:47:
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
108 | auto_ptr<CMemoryFile> m_memGi2GeneFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
111 | auto_ptr<CMemoryFile> m_memGene2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
114 | auto_ptr<CMemoryFile> m_memGi2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
117 | auto_ptr<CMemoryFile> m_memGene2GiFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1554 | static auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:48:
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
654 | auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
449 | auto_ptr<CNcbiIfstream> m_ConfigFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
450 | auto_ptr<CNcbiRegistry> m_Reg;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:46,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:53:
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
65 | auto_ptr<CNcbiOstream> m_FileStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
156 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
157 | auto_ptr<CCompressOStream> m_CompressOStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
875 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
414 | auto_ptr<CBlast_SAM_Formatter> m_SamFormatter;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/format/blast_async_format.cpp: In member function ‘virtual void* CBlastAsyncFormatThread::Main()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/format/blast_async_format.cpp:122:49: warning: comparison of integer expressions of different signedness: ‘std::map<int, std::vector<SFormatResultValues> >::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
122 | if (m_ResultsMap.size() != currNum)
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/showalign.hpp:49:
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1554 | static auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
654 | auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/format/blastfmtutil.cpp: In static member function ‘static void ncbi::CBlastFormatUtil::PrintAsciiPssm(const ncbi::objects::CPssmWithParameters&, ncbi::CConstRef<ncbi::blast::CBlastAncillaryData>, ncbi::CNcbiOstream&)’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/format/blastfmtutil.cpp:205:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
205 | auto_ptr< TNcbiMatrixInt > pssm
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/format/blastfmtutil.cpp:207:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
207 | auto_ptr< TNcbiMatrixDouble > weighted_res_freqs
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/showalign.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:48:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
654 | auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
449 | auto_ptr<CNcbiIfstream> m_ConfigFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
450 | auto_ptr<CNcbiRegistry> m_Reg;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/format/blastxml_format.cpp: In function ‘void ncbi::s_SeqAlignSetToXMLHits(std::__cxx11::list<CRef<objects::CHit> >&, const objects::CSeq_align_set&, objects::CScope*, const CBlastFormattingMatrix*, const TMaskedQueryRegions*, bool, int, int, CNcbiOstream*)’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/format/blastxml_format.cpp:501:17: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
501 | auto_ptr<CObjectOStreamXml> xml_one_hit_os (new CObjectOStreamXml (one_hit_os,false));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/format/blastxml_format.cpp:501:100: warning: ‘ncbi::CObjectOStreamXml::CObjectOStreamXml(ncbi::CNcbiOstream&, bool)’ is deprecated [-Wdeprecated-declarations]
501 | auto_ptr<CObjectOStreamXml> xml_one_hit_os (new CObjectOStreamXml (one_hit_os,false));
| ^
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/<<PKGBUILDDIR>>/c++/include/serial/objostrxml.hpp:66:26: note: declared here
66 | NCBI_DEPRECATED_CTOR(CObjectOStreamXml(CNcbiOstream& out, bool deleteOut));
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:1192:38: note: in definition of macro ‘NCBI_DEPRECATED_CTOR’
1192 | # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED
| ^~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/format/blastxml_format.cpp: In function ‘void ncbi::BlastXML_FormatReport(objects::CBlastOutput&, const IBlastXMLReportData*, CNcbiOstream*, SBlastXMLIncremental*)’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/format/blastxml_format.cpp:719:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
719 | auto_ptr< CBlastFormattingMatrix > matrix(data->GetMatrix());
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/format/blastxml_format.cpp: In function ‘bool ncbi::s_SerializeAndSplitBy(const CSerialObject&, const char*, std::string&, std::string&, bool, bool)’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/format/blastxml_format.cpp:785:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
785 | auto_ptr<CObjectOStreamXml> xml_one_iter_os(new CObjectOStreamXml (one_iter_ss_os,false));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/format/blastxml_format.cpp:785:96: warning: ‘ncbi::CObjectOStreamXml::CObjectOStreamXml(ncbi::CNcbiOstream&, bool)’ is deprecated [-Wdeprecated-declarations]
785 | auto_ptr<CObjectOStreamXml> xml_one_iter_os(new CObjectOStreamXml (one_iter_ss_os,false));
| ^
/<<PKGBUILDDIR>>/c++/include/serial/objostrxml.hpp:66:26: note: declared here
66 | NCBI_DEPRECATED_CTOR(CObjectOStreamXml(CNcbiOstream& out, bool deleteOut));
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:1192:38: note: in definition of macro ‘NCBI_DEPRECATED_CTOR’
1192 | # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED
| ^~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
449 | auto_ptr<CNcbiIfstream> m_ConfigFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
450 | auto_ptr<CNcbiRegistry> m_Reg;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:46,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:53:
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
65 | auto_ptr<CNcbiOstream> m_FileStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
156 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
157 | auto_ptr<CCompressOStream> m_CompressOStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
875 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
414 | auto_ptr<CBlast_SAM_Formatter> m_SamFormatter;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/algo/blast/format/blast_format.cpp:41:
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/algo/blast/format/blast_format.cpp:49:
/<<PKGBUILDDIR>>/c++/include/algo/blast/format/data4xmlformat.hpp: In member function ‘virtual std::string ncbi::CCmdLineBlastXMLReportData::GetFilterString() const’:
/<<PKGBUILDDIR>>/c++/include/algo/blast/format/data4xmlformat.hpp:155:38: warning: ‘char* ncbi::blast::CBlastOptions::GetFilterString() const’ is deprecated [-Wdeprecated-declarations]
155 | m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options_handle.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/uniform_search.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:42:
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here
178 | NCBI_DEPRECATED char* GetFilterString() const;
| ^~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/algo/blast/format/blast_format.cpp:51:
/<<PKGBUILDDIR>>/c++/include/algo/blast/format/data4xml2format.hpp: In member function ‘virtual std::string ncbi::CCmdLineBlastXML2ReportData::GetFilterString() const’:
/<<PKGBUILDDIR>>/c++/include/algo/blast/format/data4xml2format.hpp:140:39: warning: ‘char* ncbi::blast::CBlastOptions::GetFilterString() const’ is deprecated [-Wdeprecated-declarations]
140 | m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here
178 | NCBI_DEPRECATED char* GetFilterString() const;
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/build_archive.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/format/blast_format.cpp:52:
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/remote_blast.hpp: At global scope:
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
743 | auto_ptr<CObjectIStream> m_ObjectStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/misc/jsonwrapp/jsonwrapp11.hpp:75,
from /<<PKGBUILDDIR>>/c++/include/misc/jsonwrapp/jsonwrapp.hpp:29,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/format/blast_format.cpp:53:
/<<PKGBUILDDIR>>/c++/include/misc/jsonwrapp/rapidjson11/document.h: In instantiation of ‘rapidjson::GenericValue<Encoding, Allocator>* rapidjson::GenericValue<Encoding, Allocator>::Erase(ConstValueIterator, ConstValueIterator) [with Encoding = rapidjson::UTF8<>; Allocator = rapidjson::MemoryPoolAllocator<>; ValueIterator = rapidjson::GenericValue<rapidjson::UTF8<> >*; ConstValueIterator = const rapidjson::GenericValue<rapidjson::UTF8<> >*]’:
/<<PKGBUILDDIR>>/c++/include/misc/jsonwrapp/jsonwrapp11.hpp:1431:48: required from here
/<<PKGBUILDDIR>>/c++/include/misc/jsonwrapp/rapidjson11/document.h:1702:21: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class rapidjson::GenericValue<rapidjson::UTF8<> >’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
1702 | std::memmove(pos, last, static_cast<size_t>(End() - last) * sizeof(GenericValue));
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/misc/jsonwrapp/rapidjson11/document.h:564:7: note: ‘class rapidjson::GenericValue<rapidjson::UTF8<> >’ declared here
564 | class GenericValue {
| ^~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/misc/jsonwrapp/rapidjson11/document.h: In instantiation of ‘rapidjson::GenericValue<Encoding, Allocator>::MemberIterator rapidjson::GenericValue<Encoding, Allocator>::EraseMember(ConstMemberIterator, ConstMemberIterator) [with Encoding = rapidjson::UTF8<>; Allocator = rapidjson::MemoryPoolAllocator<>; MemberIterator = rapidjson::GenericMember<rapidjson::UTF8<>, rapidjson::MemoryPoolAllocator<> >*; ConstMemberIterator = const rapidjson::GenericMember<rapidjson::UTF8<>, rapidjson::MemoryPoolAllocator<> >*]’:
/<<PKGBUILDDIR>>/c++/include/misc/jsonwrapp/jsonwrapp11.hpp:1760:55: required from here
/<<PKGBUILDDIR>>/c++/include/misc/jsonwrapp/rapidjson11/document.h:1498:21: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘struct rapidjson::GenericMember<rapidjson::UTF8<>, rapidjson::MemoryPoolAllocator<> >’ with no trivial copy-assignment; use copy-assignment instead [-Wclass-memaccess]
1498 | std::memmove(&*pos, &*last, static_cast<size_t>(MemberEnd() - last) * sizeof(Member));
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/misc/jsonwrapp/rapidjson11/document.h:88:8: note: ‘struct rapidjson::GenericMember<rapidjson::UTF8<>, rapidjson::MemoryPoolAllocator<> >’ declared here
88 | struct GenericMember {
| ^~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/blast_args.cpp:54:
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
108 | auto_ptr<CMemoryFile> m_memGi2GeneFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
111 | auto_ptr<CMemoryFile> m_memGene2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
114 | auto_ptr<CMemoryFile> m_memGi2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
117 | auto_ptr<CMemoryFile> m_memGene2GiFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1554 | static auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/mod_reader.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/blast_fasta_input.cpp:46:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/blast_fasta_input.cpp:47:
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
65 | auto_ptr<CNcbiOstream> m_FileStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/objtools/align_format/unit_test/tabularinof_unit_test.cpp:35:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objtools/align_format/unit_test/tabularinof_unit_test.cpp:40:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/expr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:44:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/objtools/align_format/unit_test/tabularinof_unit_test.cpp:41:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/objtools/align_format/unit_test/tabularinof_unit_test.cpp:42:
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/objtools/align_format/unit_test/tabularinof_unit_test.cpp:46:
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
108 | auto_ptr<CMemoryFile> m_memGi2GeneFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
111 | auto_ptr<CMemoryFile> m_memGene2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
114 | auto_ptr<CMemoryFile> m_memGi2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
117 | auto_ptr<CMemoryFile> m_memGene2GiFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1554 | static auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/align_format/unit_test'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=align_format_unit_test /<<PKGBUILDDIR>>/c++/src/objtools/align_format/unit_test/showdefline_unit_test.cpp -o showdefline_unit_test.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=align_format_unit_test /<<PKGBUILDDIR>>/c++/src/objtools/align_format/unit_test/showalign_unit_test.cpp -o showalign_unit_test.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=align_format_unit_test /<<PKGBUILDDIR>>/c++/src/objtools/align_format/unit_test/blast_test_util.cpp -o blast_test_util.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=align_format_unit_test /<<PKGBUILDDIR>>/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp -o vectorscreen_unit_test.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=align_format_unit_test /<<PKGBUILDDIR>>/c++/src/objtools/align_format/unit_test/tabularinof_unit_test.cpp -o tabularinof_unit_test.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DIn file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/objtools/align_format/unit_test/aln_printer_unit_test.cpp:51:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/objtools/align_format/unit_test/aln_printer_unit_test.cpp:43:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbitime.hpp:65,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_system.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbifile.hpp:53,
from /<<PKGBUILDDIR>>/c++/src/objtools/align_format/unit_test/aln_printer_unit_test.cpp:35:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/gbloader.hpp:48,
from /<<PKGBUILDDIR>>/c++/src/objtools/align_format/unit_test/aln_printer_unit_test.cpp:47:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/mod_reader.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/objtools/align_format/unit_test/aln_printer_unit_test.cpp:48:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/blastinput'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/blast_input.cpp -o blast_input.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/blast_fasta_input.cpp -o blast_fasta_input.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/blast_scope_src.cpp -o blast_scope_src.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/blast_args.cpp -o blast_args.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/cmdline_flags.cpp -o cmdline_flags.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/blast_input_aux.cpp -o blast_input_aux.o
/usr/bin/g++ In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_results.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/uniform_search.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blastp_args.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/blastp_args.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:38:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:46:
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
65 | auto_ptr<CNcbiOstream> m_FileStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
156 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
157 | auto_ptr<CCompressOStream> m_CompressOStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/sseqloc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input_aux.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/blast_input_aux.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/sseqloc.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
875 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
65 | auto_ptr<CNcbiOstream> m_FileStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/blast_input_aux.cpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/mod_reader.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/psiblast_args.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/blast_input_aux.cpp:40:
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
156 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
157 | auto_ptr<CCompressOStream> m_CompressOStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
875 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_results.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/uniform_search.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blastn_args.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/blastn_args.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:38:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:46:
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
65 | auto_ptr<CNcbiOstream> m_FileStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
156 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
157 | auto_ptr<CCompressOStream> m_CompressOStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
875 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_results.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/uniform_search.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/rmblastn_args.hpp:21,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/rmblastn_args.cpp:20:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:38:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:46:
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
65 | auto_ptr<CNcbiOstream> m_FileStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
156 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
157 | auto_ptr<CCompressOStream> m_CompressOStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
875 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_results.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/uniform_search.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blastx_args.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/blastx_args.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:38:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:46:
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
65 | auto_ptr<CNcbiOstream> m_FileStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
156 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
157 | auto_ptr<CCompressOStream> m_CompressOStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
875 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_results.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/uniform_search.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/tblastn_args.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/tblastn_args.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:38:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:46:
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
65 | auto_ptr<CNcbiOstream> m_FileStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
156 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
157 | auto_ptr<CCompressOStream> m_CompressOStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
875 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
-std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/blastp_args.cpp -o blastp_args.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/blastn_args.cpp -o blastn_args.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/rmblastn_args.cpp -o rmblastn_args.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/blastx_args.cpp -o blastx_args.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/tblastn_args.cpp -o tblastn_args.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/tblastx_args.cpp -o tblastx_args.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpIn file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_results.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/uniform_search.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/tblastx_args.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/tblastx_args.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:38:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:46:
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
65 | auto_ptr<CNcbiOstream> m_FileStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
156 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
157 | auto_ptr<CCompressOStream> m_CompressOStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
875 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/misc/jsonwrapp/rapidjson11/document.h: In instantiation of ‘void rapidjson::GenericValue<Encoding, Allocator>::SetObjectRaw(Member*, rapidjson::SizeType, Allocator&) [with Encoding = rapidjson::UTF8<>; Allocator = rapidjson::MemoryPoolAllocator<>; Member = rapidjson::GenericMember<rapidjson::UTF8<>, rapidjson::MemoryPoolAllocator<> >; rapidjson::SizeType = unsigned int]’:
/<<PKGBUILDDIR>>/c++/include/misc/jsonwrapp/rapidjson11/document.h:2501:55: required from ‘bool rapidjson::GenericDocument<Encoding, Allocator, StackAllocator>::EndObject(rapidjson::SizeType) [with Encoding = rapidjson::UTF8<>; Allocator = rapidjson::MemoryPoolAllocator<>; StackAllocator = rapidjson::CrtAllocator; rapidjson::SizeType = unsigned int]’
/<<PKGBUILDDIR>>/c++/include/misc/jsonwrapp/rapidjson11/reader.h:1721:40: required from ‘rapidjson::GenericReader<SourceEncoding, TargetEncoding, StackAllocator>::IterativeParsingState rapidjson::GenericReader<SourceEncoding, TargetEncoding, StackAllocator>::Transit(IterativeParsingState, Token, IterativeParsingState, InputStream&, Handler&) [with unsigned int parseFlags = 8; InputStream = rapidjson::GenericStringStream<rapidjson::UTF8<> >; Handler = rapidjson::GenericDocument<rapidjson::UTF8<> >; SourceEncoding = rapidjson::UTF8<>; TargetEncoding = rapidjson::UTF8<>; StackAllocator = rapidjson::CrtAllocator]’
/<<PKGBUILDDIR>>/c++/include/misc/jsonwrapp/rapidjson11/reader.h:1817:58: required from ‘rapidjson::ParseResult rapidjson::GenericReader<SourceEncoding, TargetEncoding, StackAllocator>::IterativeParse(InputStream&, Handler&) [with unsigned int parseFlags = 8; InputStream = rapidjson::GenericStringStream<rapidjson::UTF8<> >; Handler = rapidjson::GenericDocument<rapidjson::UTF8<> >; SourceEncoding = rapidjson::UTF8<>; TargetEncoding = rapidjson::UTF8<>; StackAllocator = rapidjson::CrtAllocator]’
/<<PKGBUILDDIR>>/c++/include/misc/jsonwrapp/rapidjson11/reader.h:473:46: required from ‘rapidjson::ParseResult rapidjson::GenericReader<SourceEncoding, TargetEncoding, StackAllocator>::Parse(InputStream&, Handler&) [with unsigned int parseFlags = 8; InputStream = rapidjson::GenericStringStream<rapidjson::UTF8<> >; Handler = rapidjson::GenericDocument<rapidjson::UTF8<> >; SourceEncoding = rapidjson::UTF8<>; TargetEncoding = rapidjson::UTF8<>; StackAllocator = rapidjson::CrtAllocator]’
/<<PKGBUILDDIR>>/c++/include/misc/jsonwrapp/rapidjson11/document.h:2284:57: required from ‘rapidjson::GenericDocument<Encoding, Allocator, StackAllocator>& rapidjson::GenericDocument<Encoding, Allocator, StackAllocator>::ParseStream(InputStream&) [with unsigned int parseFlags = 8; SourceEncoding = rapidjson::UTF8<>; InputStream = rapidjson::GenericStringStream<rapidjson::UTF8<> >; Encoding = rapidjson::UTF8<>; Allocator = rapidjson::MemoryPoolAllocator<>; StackAllocator = rapidjson::CrtAllocator]’
/<<PKGBUILDDIR>>/c++/include/misc/jsonwrapp/rapidjson11/document.h:2351:55: required from ‘rapidjson::GenericDocument<Encoding, Allocator, StackAllocator>& rapidjson::GenericDocument<Encoding, Allocator, StackAllocator>::Parse(const typename SourceEncoding::Ch*) [with unsigned int parseFlags = 8; SourceEncoding = rapidjson::UTF8<>; Encoding = rapidjson::UTF8<>; Allocator = rapidjson::MemoryPoolAllocator<>; StackAllocator = rapidjson::CrtAllocator; typename SourceEncoding::Ch = char]’
/<<PKGBUILDDIR>>/c++/include/misc/jsonwrapp/jsonwrapp11.hpp:2294:75: required from here
/<<PKGBUILDDIR>>/c++/include/misc/jsonwrapp/rapidjson11/document.h:2024:24: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of type ‘rapidjson::GenericValue<rapidjson::UTF8<> >::Member’ {aka ‘struct rapidjson::GenericMember<rapidjson::UTF8<>, rapidjson::MemoryPoolAllocator<> >’} with no trivial copy-assignment; use copy-assignment instead [-Wclass-memaccess]
2024 | std::memcpy(m, members, count * sizeof(Member));
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/misc/jsonwrapp/rapidjson11/document.h:88:8: note: ‘rapidjson::GenericValue<rapidjson::UTF8<> >::Member’ {aka ‘struct rapidjson::GenericMember<rapidjson::UTF8<>, rapidjson::MemoryPoolAllocator<> >’} declared here
88 | struct GenericMember {
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/misc/jsonwrapp/rapidjson11/document.h: In instantiation of ‘void rapidjson::GenericValue<Encoding, Allocator>::SetArrayRaw(rapidjson::GenericValue<Encoding, Allocator>*, rapidjson::SizeType, Allocator&) [with Encoding = rapidjson::UTF8<>; Allocator = rapidjson::MemoryPoolAllocator<>; rapidjson::SizeType = unsigned int]’:
/<<PKGBUILDDIR>>/c++/include/misc/jsonwrapp/rapidjson11/document.h:2509:54: required from ‘bool rapidjson::GenericDocument<Encoding, Allocator, StackAllocator>::EndArray(rapidjson::SizeType) [with Encoding = rapidjson::UTF8<>; Allocator = rapidjson::MemoryPoolAllocator<>; StackAllocator = rapidjson::CrtAllocator; rapidjson::SizeType = unsigned int]’
/<<PKGBUILDDIR>>/c++/include/misc/jsonwrapp/rapidjson11/reader.h:1751:39: required from ‘rapidjson::GenericReader<SourceEncoding, TargetEncoding, StackAllocator>::IterativeParsingState rapidjson::GenericReader<SourceEncoding, TargetEncoding, StackAllocator>::Transit(IterativeParsingState, Token, IterativeParsingState, InputStream&, Handler&) [with unsigned int parseFlags = 8; InputStream = rapidjson::GenericStringStream<rapidjson::UTF8<> >; Handler = rapidjson::GenericDocument<rapidjson::UTF8<> >; SourceEncoding = rapidjson::UTF8<>; TargetEncoding = rapidjson::UTF8<>; StackAllocator = rapidjson::CrtAllocator]’
/<<PKGBUILDDIR>>/c++/include/misc/jsonwrapp/rapidjson11/reader.h:1817:58: required from ‘rapidjson::ParseResult rapidjson::GenericReader<SourceEncoding, TargetEncoding, StackAllocator>::IterativeParse(InputStream&, Handler&) [with unsigned int parseFlags = 8; InputStream = rapidjson::GenericStringStream<rapidjson::UTF8<> >; Handler = rapidjson::GenericDocument<rapidjson::UTF8<> >; SourceEncoding = rapidjson::UTF8<>; TargetEncoding = rapidjson::UTF8<>; StackAllocator = rapidjson::CrtAllocator]’
/<<PKGBUILDDIR>>/c++/include/misc/jsonwrapp/rapidjson11/reader.h:473:46: required from ‘rapidjson::ParseResult rapidjson::GenericReader<SourceEncoding, TargetEncoding, StackAllocator>::Parse(InputStream&, Handler&) [with unsigned int parseFlags = 8; InputStream = rapidjson::GenericStringStream<rapidjson::UTF8<> >; Handler = rapidjson::GenericDocument<rapidjson::UTF8<> >; SourceEncoding = rapidjson::UTF8<>; TargetEncoding = rapidjson::UTF8<>; StackAllocator = rapidjson::CrtAllocator]’
/<<PKGBUILDDIR>>/c++/include/misc/jsonwrapp/rapidjson11/document.h:2284:57: required from ‘rapidjson::GenericDocument<Encoding, Allocator, StackAllocator>& rapidjson::GenericDocument<Encoding, Allocator, StackAllocator>::ParseStream(InputStream&) [with unsigned int parseFlags = 8; SourceEncoding = rapidjson::UTF8<>; InputStream = rapidjson::GenericStringStream<rapidjson::UTF8<> >; Encoding = rapidjson::UTF8<>; Allocator = rapidjson::MemoryPoolAllocator<>; StackAllocator = rapidjson::CrtAllocator]’
/<<PKGBUILDDIR>>/c++/include/misc/jsonwrapp/rapidjson11/document.h:2351:55: required from ‘rapidjson::GenericDocument<Encoding, Allocator, StackAllocator>& rapidjson::GenericDocument<Encoding, Allocator, StackAllocator>::Parse(const typename SourceEncoding::Ch*) [with unsigned int parseFlags = 8; SourceEncoding = rapidjson::UTF8<>; Encoding = rapidjson::UTF8<>; Allocator = rapidjson::MemoryPoolAllocator<>; StackAllocator = rapidjson::CrtAllocator; typename SourceEncoding::Ch = char]’
/<<PKGBUILDDIR>>/c++/include/misc/jsonwrapp/jsonwrapp11.hpp:2294:75: required from here
/<<PKGBUILDDIR>>/c++/include/misc/jsonwrapp/rapidjson11/document.h:2009:24: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of type ‘class rapidjson::GenericValue<rapidjson::UTF8<> >’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
2009 | std::memcpy(e, values, count * sizeof(GenericValue));
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/misc/jsonwrapp/rapidjson11/document.h:564:7: note: ‘class rapidjson::GenericValue<rapidjson::UTF8<> >’ declared here
564 | class GenericValue {
| ^~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_results.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/uniform_search.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/psiblast_args.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/psiblast_args.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:38:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:46:
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
65 | auto_ptr<CNcbiOstream> m_FileStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
156 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
157 | auto_ptr<CCompressOStream> m_CompressOStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
875 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_results.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/uniform_search.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/rpsblast_args.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/rpsblast_args.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:38:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:46:
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
65 | auto_ptr<CNcbiOstream> m_FileStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
156 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
157 | auto_ptr<CCompressOStream> m_CompressOStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
875 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_results.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/uniform_search.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/rpstblastn_args.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/rpstblastn_args.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:38:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:46:
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
65 | auto_ptr<CNcbiOstream> m_FileStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
156 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
157 | auto_ptr<CCompressOStream> m_CompressOStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
875 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘virtual void ncbi::blast::CMappingArgs::ExtractAlgorithmOptions(const ncbi::CArgs&, ncbi::blast::CBlastOptions&)’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/blast_args.cpp:1495:37:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_results.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/uniform_search.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/igblastn_args.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/igblastn_args.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:38:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:46:
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
65 | auto_ptr<CNcbiOstream> m_FileStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
156 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
157 | auto_ptr<CCompressOStream> m_CompressOStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
875 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_results.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/uniform_search.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/igblastp_args.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/igblastp_args.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:38:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=align_format_unit_test /<<PKGBUILDDIR>>/c++/src/objtools/align_format/unit_test/aln_printer_unit_test.cpp -o aln_printer_unit_test.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie showdefline_unit_test.o showalign_unit_test.o blast_test_util.o vectorscreen_unit_test.o tabularinof_unit_test.o aln_printer_unit_test.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -ltest_boost -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lxcgi -lxhtml -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o align_format_unit_test
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f align_format_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f align_format_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin/align_format_unit_test
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/align_format/unit_test'
kg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/psiblast_args.cpp -o psiblast_args.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/rpsblast_args.cpp -o rpsblast_args.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/rpstblastn_args.cpp -o rpstblastn_args.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/igblastn_args.cpp -o igblastn_args.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/igblastp_args.cpp -o igblastp_args.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/deltablast_args.cpp -o deltablast_args.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFIn file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:46:
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
65 | auto_ptr<CNcbiOstream> m_FileStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
156 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
157 | auto_ptr<CCompressOStream> m_CompressOStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
875 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/align_format/unit_test'
/<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/igblastp_args.cpp: In constructor ‘ncbi::blast::CIgBlastpAppArgs::CIgBlastpAppArgs()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/igblastp_args.cpp:67:16: warning: unused variable ‘kFilterByDefault’ [-Wunused-variable]
67 | const bool kFilterByDefault = false;
| ^~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_results.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/uniform_search.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/deltablast_args.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/deltablast_args.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:38:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_results.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/uniform_search.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/magicblast_args.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/magicblast_args.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:38:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:46:
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
65 | auto_ptr<CNcbiOstream> m_FileStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
156 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
157 | auto_ptr<CCompressOStream> m_CompressOStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
875 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:46:
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
65 | auto_ptr<CNcbiOstream> m_FileStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
156 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
157 | auto_ptr<CCompressOStream> m_CompressOStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
875 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/magicblast_args.cpp:37:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/mod_reader.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/magicblast_args.cpp: In member function ‘virtual void ncbi::blast::CMapperMTArgs::ExtractAlgorithmOptions(const ncbi::CArgs&, ncbi::blast::CBlastOptions&)’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/magicblast_args.cpp:205:59: warning: ‘unsigned int ncbi::GetCpuCount()’ is deprecated [-Wdeprecated-declarations]
205 | const int kMaxValue = static_cast<int>(GetCpuCount());
| ~~~~~~~~~~~^~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbifile.hpp:53,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:39:
/<<PKGBUILDDIR>>/c++/include/corelib/ncbi_system.hpp:479:14: note: declared here
479 | unsigned int GetCpuCount(void)
| ^~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_results.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/uniform_search.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/kblastp_args.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/kblastp_args.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:38:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:46:
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
65 | auto_ptr<CNcbiOstream> m_FileStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
156 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
157 | auto_ptr<CCompressOStream> m_CompressOStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
875 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_types_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/feat_ci.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:50,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/blast_asn1_input.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:54:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/blast_asn1_input.cpp:41:
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
65 | auto_ptr<CNcbiOstream> m_FileStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /usr/include/c++/12/memory:66,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_stack.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/sseqloc.hpp:37:
/usr/include/c++/12/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const ncbi::align_format::CAlignFormatUtil::SDbInfo*, vector<ncbi::align_format::CAlignFormatUtil::SDbInfo> >; _ForwardIterator = ncbi::align_format::CAlignFormatUtil::SDbInfo*]’:
/usr/include/c++/12/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const ncbi::align_format::CAlignFormatUtil::SDbInfo*, std::vector<ncbi::align_format::CAlignFormatUtil::SDbInfo> >’ changed in GCC 7.1
113 | __do_uninit_copy(_InputIterator __first, _InputIterator __last,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const ncbi::align_format::CAlignFormatUtil::SDbInfo*, std::vector<ncbi::align_format::CAlignFormatUtil::SDbInfo> >’ changed in GCC 7.1
In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const ncbi::align_format::CAlignFormatUtil::SDbInfo*, std::vector<ncbi::align_format::CAlignFormatUtil::SDbInfo> >; _ForwardIterator = ncbi::align_format::CAlignFormatUtil::SDbInfo*; bool _TrivialValueTypes = false]’,
inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const ncbi::align_format::CAlignFormatUtil::SDbInfo*, vector<ncbi::align_format::CAlignFormatUtil::SDbInfo> >; _ForwardIterator = ncbi::align_format::CAlignFormatUtil::SDbInfo*]’ at /usr/include/c++/12/bits/stl_uninitialized.h:185:15,
inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const ncbi::align_format::CAlignFormatUtil::SDbInfo*, vector<ncbi::align_format::CAlignFormatUtil::SDbInfo> >; _ForwardIterator = ncbi::align_format::CAlignFormatUtil::SDbInfo*; _Tp = ncbi::align_format::CAlignFormatUtil::SDbInfo]’ at /usr/include/c++/12/bits/stl_uninitialized.h:372:37,
inlined from ‘std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const ncbi::align_format::CAlignFormatUtil::SDbInfo*, std::vector<ncbi::align_format::CAlignFormatUtil::SDbInfo> >; _Tp = ncbi::align_format::CAlignFormatUtil::SDbInfo; _Alloc = std::allocator<ncbi::align_format::CAlignFormatUtil::SDbInfo>]’ at /usr/include/c++/12/bits/stl_vector.h:1617:35,
inlined from ‘void std::vector<_Tp, _Alloc>::_M_assign_aux(_ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const ncbi::align_format::CAlignFormatUtil::SDbInfo*, std::vector<ncbi::align_format::CAlignFormatUtil::SDbInfo> >; _Tp = ncbi::align_format::CAlignFormatUtil::SDbInfo; _Alloc = std::allocator<ncbi::align_format::CAlignFormatUtil::SDbInfo>]’ at /usr/include/c++/12/bits/vector.tcc:318:40,
inlined from ‘void std::vector<_Tp, _Alloc>::_M_assign_dispatch(_InputIterator, _InputIterator, std::__false_type) [with _InputIterator = __gnu_cxx::__normal_iterator<const ncbi::align_format::CAlignFormatUtil::SDbInfo*, std::vector<ncbi::align_format::CAlignFormatUtil::SDbInfo> >; _Tp = ncbi::align_format::CAlignFormatUtil::SDbInfo; _Alloc = std::allocator<ncbi::align_format::CAlignFormatUtil::SDbInfo>]’ at /usr/include/c++/12/bits/stl_vector.h:1737:17,
inlined from ‘void std::vector<_Tp, _Alloc>::assign(_InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const ncbi::align_format::CAlignFormatUtil::SDbInfo*, std::vector<ncbi::align_format::CAlignFormatUtil::SDbInfo> >; <template-parameter-2-2> = void; _Tp = ncbi::align_format::CAlignFormatUtil::SDbInfo; _Alloc = std::allocator<ncbi::align_format::CAlignFormatUtil::SDbInfo>]’ at /usr/include/c++/12/bits/stl_vector.h:824:22,
inlined from ‘ncbi::CBlastFormat::CBlastFormat(const ncbi::blast::CBlastOptions&, const std::vector<ncbi::align_format::CAlignFormatUtil::SDbInfo>&, ncbi::blast::CFormattingArgs::EOutputFormat, bool, ncbi::CNcbiOstream&, int, int, ncbi::objects::CScope&, bool, bool, bool, const std::string&, bool, const std::string&)’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/format/blast_format.cpp:258:20:
/usr/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const ncbi::align_format::CAlignFormatUtil::SDbInfo*, std::vector<ncbi::align_format::CAlignFormatUtil::SDbInfo> >’ changed in GCC 7.1
137 | { return std::__do_uninit_copy(__first, __last, __result); }
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const ncbi::align_format::CAlignFormatUtil::SDbInfo*, std::vector<ncbi::align_format::CAlignFormatUtil::SDbInfo> >; _ForwardIterator = ncbi::align_format::CAlignFormatUtil::SDbInfo*; bool _TrivialValueTypes = false]’,
inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const ncbi::align_format::CAlignFormatUtil::SDbInfo*, vector<ncbi::align_format::CAlignFormatUtil::SDbInfo> >; _ForwardIterator = ncbi::align_format::CAlignFormatUtil::SDbInfo*]’ at /usr/include/c++/12/bits/stl_uninitialized.h:185:15,
inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const ncbi::align_format::CAlignFormatUtil::SDbInfo*, vector<ncbi::align_format::CAlignFormatUtil::SDbInfo> >; _ForwardIterator = ncbi::align_format::CAlignFormatUtil::SDbInfo*; _Tp = ncbi::align_format::CAlignFormatUtil::SDbInfo]’ at /usr/include/c++/12/bits/stl_uninitialized.h:372:37,
inlined from ‘void std::vector<_Tp, _Alloc>::_M_assign_aux(_ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const ncbi::align_format::CAlignFormatUtil::SDbInfo*, std::vector<ncbi::align_format::CAlignFormatUtil::SDbInfo> >; _Tp = ncbi::align_format::CAlignFormatUtil::SDbInfo; _Alloc = std::allocator<ncbi::align_format::CAlignFormatUtil::SDbInfo>]’ at /usr/include/c++/12/bits/vector.tcc:339:35,
inlined from ‘void std::vector<_Tp, _Alloc>::_M_assign_dispatch(_InputIterator, _InputIterator, std::__false_type) [with _InputIterator = __gnu_cxx::__normal_iterator<const ncbi::align_format::CAlignFormatUtil::SDbInfo*, std::vector<ncbi::align_format::CAlignFormatUtil::SDbInfo> >; _Tp = ncbi::align_format::CAlignFormatUtil::SDbInfo; _Alloc = std::allocator<ncbi::align_format::CAlignFormatUtil::SDbInfo>]’ at /usr/include/c++/12/bits/stl_vector.h:1737:17,
inlined from ‘void std::vector<_Tp, _Alloc>::assign(_InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const ncbi::align_format::CAlignFormatUtil::SDbInfo*, std::vector<ncbi::align_format::CAlignFormatUtil::SDbInfo> >; <template-parameter-2-2> = void; _Tp = ncbi::align_format::CAlignFormatUtil::SDbInfo; _Alloc = std::allocator<ncbi::align_format::CAlignFormatUtil::SDbInfo>]’ at /usr/include/c++/12/bits/stl_vector.h:824:22,
inlined from ‘ncbi::CBlastFormat::CBlastFormat(const ncbi::blast::CBlastOptions&, const std::vector<ncbi::align_format::CAlignFormatUtil::SDbInfo>&, ncbi::blast::CFormattingArgs::EOutputFormat, bool, ncbi::CNcbiOstream&, int, int, ncbi::objects::CScope&, bool, bool, bool, const std::string&, bool, const std::string&)’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/format/blast_format.cpp:258:20:
/usr/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const ncbi::align_format::CAlignFormatUtil::SDbInfo*, std::vector<ncbi::align_format::CAlignFormatUtil::SDbInfo> >’ changed in GCC 7.1
137 | { return std::__do_uninit_copy(__first, __last, __result); }
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
ILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/magicblast_args.cpp -o magicblast_args.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/kblastp_args.cpp -o kblastp_args.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/blast_asn1_input.cpp -o blast_asn1_input.o
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/usr/bin/g++ -std=gnu++14 -shared -o libblastinput.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC blast_input.o blast_fasta_input.o blast_scope_src.o blast_args.o cmdline_flags.o blast_input_aux.o blastp_args.o blastn_args.o rmblastn_args.o blastx_args.o tblastn_args.o tblastx_args.o psiblast_args.o rpsblast_args.o rpstblastn_args.o igblastn_args.o igblastp_args.o deltablast_args.o magicblast_args.o kblastp_args.o blast_asn1_input.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lxblast -lalign_format -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lseqdb -lxobjread -lxobjread -lvariation -lsubmit -lxlogging -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lxutil -lncbi_xloader_genbank -lncbi_xreader_id2 -lncbi_xreader -lscoremat -lseqset -lseq -lxser -lxutil -lxncbi -llmdb -lpthread -lm -lpthread
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastinput.so /<<PKGBUILDDIR>>/c++/BUILD/lib
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make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/blastinput'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/blastinput'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/format/build_archive.cpp -o build_archive.o
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/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/algo/blast/format/blast_async_format.cpp -o blast_async_format.o
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/usr/bin/g++ -std=gnu++14 -shared -o libxblastformat.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC blastfmtutil.o blastxml_format.o blastxml2_format.o blast_format.o data4xmlformat.o data4xml2format.o build_archive.o vecscreen_run.o sam.o blast_async_format.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lxformat -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lalign_format -lblastxml -lblastxml2 -lxhtml -lxcgi -lxncbi -llmdb -lpthread -lm -lpthread
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/bin/ln -f libxblastformat.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libxblastformat.so
/bin/ln -f .xblastformat.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.xblastformat.dep
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/format'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/format'
cd algo/blast/blastinput/unit_test/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=blastinput_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=bl2seq_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=blast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=delta_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/blastinput/unit_test'
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/blastinput/unit_test'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/blastinput/unit_test'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/blastinput/unit_test'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/blastinput/unit_test'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api TMPL=delta_unit_test -w -j4 --jobserver-auth=7,8 all
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api TMPL=blast_unit_test -w -j4 --jobserver-auth=7,8 all
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api TMPL=bl2seq_unit_test -w -j4 --jobserver-auth=7,8 all
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/unit_test TMPL=blastinput_unit_test -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/delta_unit_test.cpp:34:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp:35:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blast_unit_test.cpp:39:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:35:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/unit_test/blast_input_unit_test_aux.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:64:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:34:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:45:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/expr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:44:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/delta_unit_test.cpp:47:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/expr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:44:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/sseqloc.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:48:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/seq_loc_util.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/sseqloc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/bl2seq.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/expr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:44:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:51:
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
65 | auto_ptr<CNcbiOstream> m_FileStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blast_unit_test /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blast_unit_test.cpp -o blast_unit_test.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blast_unit_test.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -llmdb -lpthread -lm -lpthread -o blast_unit_test
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f blast_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin/blast_unit_test
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=magicblast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api TMPL=magicblast_unit_test -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/magicblast_unit_test.cpp:32:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:56,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/delta_unit_test.cpp:66:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/mod_reader.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:52:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blastfmtutil.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:49:
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
108 | auto_ptr<CMemoryFile> m_memGi2GeneFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
111 | auto_ptr<CMemoryFile> m_memGene2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
114 | auto_ptr<CMemoryFile> m_memGi2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
117 | auto_ptr<CMemoryFile> m_memGene2GiFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1554 | static auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/mod_reader.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp:43:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/showalign.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blastfmtutil.hpp:41:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:54:
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
654 | auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blastp_args.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:57:
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
156 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
157 | auto_ptr<CCompressOStream> m_CompressOStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
875 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/mod_reader.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:61:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:68:
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::ProteinBlastSelfHit::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:584:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
584 | auto_ptr<SSeqLoc> sl(CTestObjMgr::Instance().CreateSSeqLoc(id));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::TBlastn2Seqs::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:627:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
627 | auto_ptr<SSeqLoc> query(CTestObjMgr::Instance().CreateSSeqLoc(qid));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:630:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
630 | auto_ptr<SSeqLoc> subj(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::TBlastn2SeqsRevStrand1::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:666:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
666 | auto_ptr<SSeqLoc> query(CTestObjMgr::Instance().CreateSSeqLoc(qid));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:670:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
670 | auto_ptr<SSeqLoc> subj(CTestObjMgr::Instance().CreateSSeqLoc(sid, range, eNa_strand_minus));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::TBlastn2SeqsRevStrand2::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:694:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
694 | auto_ptr<SSeqLoc> query(CTestObjMgr::Instance().CreateSSeqLoc(qid));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:697:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
697 | auto_ptr<SSeqLoc> subj(CTestObjMgr::Instance().CreateSSeqLoc(sid, eNa_strand_minus));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::TBlastn2SeqsCompBasedStats::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:720:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
720 | auto_ptr<SSeqLoc> query(CTestObjMgr::Instance().CreateSSeqLoc(qid));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:723:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
723 | auto_ptr<SSeqLoc> subj(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::TBlastn2SeqsLargeWord::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:755:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
755 | auto_ptr<SSeqLoc> query(CTestObjMgr::Instance().CreateSSeqLoc(qid));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:758:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
758 | auto_ptr<SSeqLoc> subj(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::IdenticalProteins::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:789:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
789 | auto_ptr<SSeqLoc> query(CTestObjMgr::Instance().CreateSSeqLoc(qid));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:791:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
791 | auto_ptr<SSeqLoc> subj(CTestObjMgr::Instance().CreateSSeqLoc(sid));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::PositiveMismatchOption::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:835:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
835 | auto_ptr<SSeqLoc> query(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:837:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
837 | auto_ptr<SSeqLoc> subj(CTestObjMgr::Instance().CreateSSeqLoc(sid));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::FullyMaskedSequence::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:860:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
860 | auto_ptr<SSeqLoc> query(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:866:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
866 | auto_ptr<SSeqLoc> subj(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::MultipleQueries1FullyMasked::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:900:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
900 | auto_ptr<CAutoEnvironmentVariable> envvar1, envvar2;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::testInterruptBlastpExitImmediately::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:938:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
938 | auto_ptr<SSeqLoc> sl(CTestObjMgr::Instance().CreateSSeqLoc(id));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::Tblastn2Seqs_PlusStrandOnly::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:957:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
957 | auto_ptr<SSeqLoc> ql(CTestObjMgr::Instance().CreateSSeqLoc(qid));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:963:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
963 | auto_ptr<SSeqLoc> sl(CTestObjMgr::Instance().CreateSSeqLoc(sid,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::testInterruptBlastSetup::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:998:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
998 | auto_ptr<SSeqLoc> sl(CTestObjMgr::Instance().CreateSSeqLoc(id));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In function ‘std::string* blastinput::s_FileContents2String(const char*)’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:1669:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1669 | auto_ptr<string> retval(new string);
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function ‘void blastinput::ReadAccessionNucleotideIntoBuffer_Single::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:1681:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1681 | auto_ptr<string> user_input(s_FileContents2String(fname));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::testInterruptBlastnExitImmediately::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1014:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1014 | auto_ptr<SSeqLoc> sl(CTestObjMgr::Instance().CreateSSeqLoc(id));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::testInterruptBlastxExitImmediately::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1030:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1030 | auto_ptr<SSeqLoc> slq(CTestObjMgr::Instance().CreateSSeqLoc(query_id));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1032:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1032 | auto_ptr<SSeqLoc> sls(CTestObjMgr::Instance().CreateSSeqLoc(subj_id));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::testInterruptTblastxExitImmediately::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1048:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1048 | auto_ptr<SSeqLoc> slq(CTestObjMgr::Instance().CreateSSeqLoc(query_id));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1050:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1050 | auto_ptr<SSeqLoc> sls(CTestObjMgr::Instance().CreateSSeqLoc(subj_id));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function ‘void blastinput::ReadGiNuclWithFlankingSpacesIntoBuffer_Single::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:1735:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1735 | auto_ptr<string> user_input(new string(" 1945386 \n "));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::testInterruptTblastnExitImmediately::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1066:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1066 | auto_ptr<SSeqLoc> slq(CTestObjMgr::Instance().CreateSSeqLoc(query_id));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1068:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1068 | auto_ptr<SSeqLoc> sls(CTestObjMgr::Instance().CreateSSeqLoc(subj_id));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function ‘void blastinput::ReadAccessionNuclWithFlankingSpacesIntoBuffer_Single::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:1808:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1808 | auto_ptr<string> user_input(new string(" X65215.1 "));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::testInterruptBlastpExitAfter3Callbacks::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1276:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1276 | auto_ptr<SSeqLoc> sl(CTestObjMgr::Instance().CreateSSeqLoc(id));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function ‘void blastinput::ReadFastaWithDeflineProteinIntoBuffer_Single::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:1882:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1882 | auto_ptr<string> user_input(s_FileContents2String(fname));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::NucleotideBlastMultipleQueriesWithInvalidSeqId::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1426:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1426 | auto_ptr<SSeqLoc> sl1(CTestObjMgr::Instance().CreateSSeqLoc(*id1));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1428:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1428 | auto_ptr<SSeqLoc> sl2(CTestObjMgr::Instance().CreateSSeqLoc(*id2));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1446:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1446 | auto_ptr<SSeqLoc> sl_bad(new SSeqLoc(*fake_loc, *scope));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1458:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1458 | auto_ptr<SSeqLoc> subj_loc
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::ProteinCompBasedStats::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1620:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1620 | auto_ptr<SSeqLoc> ss2(CTestObjMgr::Instance().CreateSSeqLoc(id));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::Blastx2Seqs_QueryBothStrands::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1640:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1640 | auto_ptr<SSeqLoc> query(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1645:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1645 | auto_ptr<SSeqLoc> subj(CTestObjMgr::Instance().CreateSSeqLoc(sid));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::NucleotideSelfHitWithSubjectMask::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1672:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1672 | auto_ptr<SSeqLoc> subject(new SSeqLoc(ssl, scope, subj_mask));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::NucleotideBlastSelfHit::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1690:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1690 | auto_ptr<SSeqLoc> sl(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::MegablastGreedyTraceback::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1724:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1724 | auto_ptr<SSeqLoc> ql(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1729:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1729 | auto_ptr<SSeqLoc> sl(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::MegablastGreedyTracebackSelfHits::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1844:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1844 | auto_ptr<SSeqLoc> ql(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1849:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1849 | auto_ptr<SSeqLoc> sl(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::Blastx2Seqs_QueryPlusStrand::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1878:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1878 | auto_ptr<SSeqLoc> query(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1882:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1882 | auto_ptr<SSeqLoc> subj(CTestObjMgr::Instance().CreateSSeqLoc(sid));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::Blastx2Seqs_QueryMinusStrand::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1892:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1892 | auto_ptr<SSeqLoc> query(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1896:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1896 | auto_ptr<SSeqLoc> subj(CTestObjMgr::Instance().CreateSSeqLoc(sid));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::TBlastx2Seqs_QueryBothStrands::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1907:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1907 | auto_ptr<SSeqLoc> sl(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::TBlastx2Seqs_QueryPlusStrand::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1920:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1920 | auto_ptr<SSeqLoc> sl(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::TBlastx2Seqs_QueryMinusStrand::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1931:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1931 | auto_ptr<SSeqLoc> sl(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::TblastxManyHits::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1949:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1949 | auto_ptr<SSeqLoc> qsl(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1953:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1953 | auto_ptr<SSeqLoc> ssl(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::ProteinBlast2Seqs::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1986:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1986 | auto_ptr<SSeqLoc> query(CTestObjMgr::Instance().CreateSSeqLoc(id));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1989:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1989 | auto_ptr<SSeqLoc> subj(CTestObjMgr::Instance().CreateSSeqLoc(id));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::BlastnWithRepeatFiltering_InvalidDB::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2001:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
2001 | auto_ptr<SSeqLoc> query(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::BlastnWithRepeatFiltering::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2022:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
2022 | auto_ptr<SSeqLoc> query(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::BlastnWithWindowMasker_Db::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2052:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
2052 | auto_ptr<SSeqLoc> query(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::BlastnWithWindowMasker_Taxid::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2072:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
2072 | auto_ptr<SSeqLoc> query(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::BlastnWithWindowMasker_InvalidDb::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2087:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
2087 | auto_ptr<SSeqLoc> query(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::BlastnWithWindowMasker_InvalidTaxid::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2104:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
2104 | auto_ptr<SSeqLoc> query(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::BlastnWithWindowMasker_DbAndTaxid::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2132:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
2132 | auto_ptr<SSeqLoc> query(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::Alex::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2158:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
2158 | auto_ptr<SSeqLoc> query(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2163:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
2163 | auto_ptr<SSeqLoc> subj(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::NucleotideBlast2Seqs::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2178:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
2178 | auto_ptr<SSeqLoc> query(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2182:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
2182 | auto_ptr<SSeqLoc> subj(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::ProteinBlastChangeQuery::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2197:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
2197 | auto_ptr<SSeqLoc> query(CTestObjMgr::Instance().CreateSSeqLoc(id));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2200:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
2200 | auto_ptr<SSeqLoc> subj(CTestObjMgr::Instance().CreateSSeqLoc(id));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::ProteinBlastChangeSubject::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2217:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
2217 | auto_ptr<SSeqLoc> query(CTestObjMgr::Instance().CreateSSeqLoc(qid));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2220:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
2220 | auto_ptr<SSeqLoc> subj(CTestObjMgr::Instance().CreateSSeqLoc(sid));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::NucleotideBlastChangeQuery::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2238:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
2238 | auto_ptr<SSeqLoc> query(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2242:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
2242 | auto_ptr<SSeqLoc> subj(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::NucleotideBlastChangeSubject::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2263:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
2263 | auto_ptr<SSeqLoc> query(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2267:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
2267 | auto_ptr<SSeqLoc> subj(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::ProteinBlastMultipleQueries::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2290:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
2290 | auto_ptr<SSeqLoc> sl1(CTestObjMgr::Instance().CreateSSeqLoc(qid));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2294:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
2294 | auto_ptr<SSeqLoc> sl2(CTestObjMgr::Instance().CreateSSeqLoc(sid));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::NucleotideBlastMultipleQueries::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2344:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
2344 | auto_ptr<SSeqLoc> sl1(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2350:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
2350 | auto_ptr<SSeqLoc> sl2(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::TblastnOutOfFrame::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2469:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
2469 | auto_ptr<SSeqLoc> query(CTestObjMgr::Instance().CreateSSeqLoc(qid));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2470:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
2470 | auto_ptr<SSeqLoc> subj(CTestObjMgr::Instance().CreateSSeqLoc(sid));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::TblastnOutOfFrame2::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2494:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
2494 | auto_ptr<SSeqLoc> query(CTestObjMgr::Instance().CreateSSeqLoc(qid));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2495:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
2495 | auto_ptr<SSeqLoc> subj(CTestObjMgr::Instance().CreateSSeqLoc(sid));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::BlastxOutOfFrame::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2526:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
2526 | auto_ptr<SSeqLoc> query(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2528:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
2528 | auto_ptr<SSeqLoc> subj(CTestObjMgr::Instance().CreateSSeqLoc(sid));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::BlastxOutOfFrame_DifferentFrames::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2552:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
2552 | auto_ptr<SSeqLoc> query(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2554:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
2554 | auto_ptr<SSeqLoc> subj(CTestObjMgr::Instance().CreateSSeqLoc(sid));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::Blastn_QueryBothStrands_SubjBothStrands::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2710:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
2710 | auto_ptr<SSeqLoc> query(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2717:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
2717 | auto_ptr<SSeqLoc> subj(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::Blastn_QueryBothStrands_SubjPlusStrand::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2733:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
2733 | auto_ptr<SSeqLoc> query(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2740:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
2740 | auto_ptr<SSeqLoc> subj(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::Blastn_QueryBothStrands_SubjMinusStrand::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2756:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
2756 | auto_ptr<SSeqLoc> query(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2763:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
2763 | auto_ptr<SSeqLoc> subj(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::Blastn_QueryPlusStrand_SubjPlusStrand::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2779:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
2779 | auto_ptr<SSeqLoc> query(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2786:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
2786 | auto_ptr<SSeqLoc> subj(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::Blastn_QueryPlusStrand_SubjMinusStrand::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2802:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
2802 | auto_ptr<SSeqLoc> query(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2809:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
2809 | auto_ptr<SSeqLoc> subj(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::Blastn_QueryPlusStrand_SubjBothStrands::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2826:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
2826 | auto_ptr<SSeqLoc> query(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2833:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
2833 | auto_ptr<SSeqLoc> subj(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::Blastn_QueryMinusStrand_SubjMinusStrand::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2849:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
2849 | auto_ptr<SSeqLoc> query(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2856:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
2856 | auto_ptr<SSeqLoc> subj(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::Blastn_QueryMinusStrand_SubjPlusStrand::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2872:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
2872 | auto_ptr<SSeqLoc> query(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2879:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
2879 | auto_ptr<SSeqLoc> subj(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::Blastn_QueryMinusStrand_SubjBothStrands::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2895:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
2895 | auto_ptr<SSeqLoc> query(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2902:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
2902 | auto_ptr<SSeqLoc> subj(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::Blastn_QueryWhole_SubjInterval::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2917:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
2917 | auto_ptr<SSeqLoc> query(CTestObjMgr::Instance().CreateWholeSSeqLoc(*qid));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2921:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
2921 | auto_ptr<SSeqLoc> subj(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::Blastn_QueryInterval_SubjWhole::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2936:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
2936 | auto_ptr<SSeqLoc> query(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2941:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
2941 | auto_ptr<SSeqLoc> subj(CTestObjMgr::Instance().CreateWholeSSeqLoc(*sid));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function ‘ncbi::CArgs* blastargs::CString2Args::CreateCArgs(ncbi::blast::CBlastAppArgs&) const’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:3227:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
3227 | auto_ptr<CArgDescriptions> arg_desc(args.SetCommandLine());
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function ‘void blastargs::PsiBlastAppTestMatrix::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:3289:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
3289 | auto_ptr<CArgs> args(s2a.CreateCArgs(psiblast_args));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function ‘void blastargs::RpsBlastCBS::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:3300:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
3300 | auto_ptr<CArgs> args(s2a.CreateCArgs(rpsblast_args));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function ‘void blastargs::CheckMutuallyExclusiveOptions::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:3320:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
3320 | auto_ptr<CArgs> args;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function ‘void blastargs::CheckDiscoMegablast::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:3327:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
3327 | auto_ptr<CArgs> args;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::BlastOptionsEquality::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:3231:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
3231 | auto_ptr<CBlastOptionsHandle> megablast_options_handle(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::BlastOptionsInequality::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:3245:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
3245 | auto_ptr<CBlastOptionsHandle> blastn_options_handle(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function ‘void blastargs::CheckPercentIdentity::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:3351:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
3351 | auto_ptr<CArgs> args;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::DiscontiguousMB::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:3260:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
3260 | auto_ptr<SSeqLoc> query(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:3262:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
3262 | auto_ptr<SSeqLoc> subj(CTestObjMgr::Instance().CreateSSeqLoc(sid));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function ‘void blastargs::CheckNoGreedyExtension::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:3365:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
3365 | auto_ptr<CArgs> args;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::BlastnHumanChrom_MRNA::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:3279:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
3279 | auto_ptr<SSeqLoc> query(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:3282:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
3282 | auto_ptr<SSeqLoc> subj(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::testOneSubjectResults2CSeqAlign::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:3307:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
3307 | auto_ptr<SSeqLoc> sl(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function ‘void blastargs::CheckCulling::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:3387:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
3387 | auto_ptr<CArgs> args;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::testMultiSeqSearchSymmetry::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:3346:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
3346 | auto_ptr<SSeqLoc> sl(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function ‘void blastargs::CheckQueryCoveragePercent::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:3415:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
3415 | auto_ptr<CArgs> args;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::testInterruptCallbackWithNull::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:3514:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
3514 | auto_ptr<SSeqLoc> sl(CTestObjMgr::Instance().CreateSSeqLoc(id));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function ‘void blastargs::CheckMaxHspsPerSubject::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:3429:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
3429 | auto_ptr<CArgs> args;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::testInterruptCallbackDoNotInterrupt::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:3542:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
3542 | auto_ptr<SSeqLoc> sl(CTestObjMgr::Instance().CreateSSeqLoc(id));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function ‘void bl2seq::QueryMaskIgnoredInMiniExtension::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:3602:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
3602 | auto_ptr<SSeqLoc> query(new SSeqLoc(qloc, scope));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:3603:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
3603 | auto_ptr<SSeqLoc> subject(
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/query_data.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/setup_factory.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/magicblast.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/magicblast_unit_test.cpp:54:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/expr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:44:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=delta_unit_test /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/delta_unit_test.cpp -o delta_unit_test.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie delta_unit_test.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lseqalign_util -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o delta_unit_test
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f delta_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f delta_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin/delta_unit_test
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=psiblast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api TMPL=psiblast_unit_test -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/psiblast_unit_test.cpp:35:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=magicblast_unit_test /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/magicblast_unit_test.cpp -o magicblast_unit_test.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie magicblast_unit_test.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o magicblast_unit_test
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f magicblast_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f magicblast_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin/magicblast_unit_test
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=redoalignment_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api TMPL=redoalignment_unit_test -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp:34:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator<long long int>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<long long int>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<long long int>::iterator’ changed in GCC 7.1
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]’:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/query_data.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/setup_factory.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/psiblast.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/psiblast_unit_test.cpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/expr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:44:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp:37:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/expr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:44:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/psiblast_unit_test.cpp:44:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘std::back_insert_iterator<_Container>& std::back_insert_iterator<_Container>::operator=(const typename _Container::value_type&) [with _Container = std::vector<long long int>]’ at /usr/include/c++/12/bits/stl_iterator.h:735:22,
inlined from ‘static _OI std::__copy_move<false, false, std::random_access_iterator_tag>::__copy_m(_II, _II, _OI) [with _II = long long int*; _OI = std::back_insert_iterator<std::vector<long long int> >]’ at /usr/include/c++/12/bits/stl_algobase.h:385:18,
inlined from ‘_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = long long int*; _OI = back_insert_iterator<vector<long long int> >]’ at /usr/include/c++/12/bits/stl_algobase.h:495:30,
inlined from ‘_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = long long int*; _OI = back_insert_iterator<vector<long long int> >]’ at /usr/include/c++/12/bits/stl_algobase.h:522:42,
inlined from ‘_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = long long int*; _OI = back_insert_iterator<vector<long long int> >]’ at /usr/include/c++/12/bits/stl_algobase.h:529:31,
inlined from ‘_OI std::copy(_II, _II, _OI) [with _II = long long int*; _OI = back_insert_iterator<vector<long long int> >]’ at /usr/include/c++/12/bits/stl_algobase.h:620:7,
inlined from ‘ncbi::CRef<ncbi::blast::CBl2Seq> bl2seq::s_SetupWithMultipleQueriesAndSubjects(bool, bool, ncbi::blast::EProgram)’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1094:13:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘std::back_insert_iterator<_Container>& std::back_insert_iterator<_Container>::operator=(const typename _Container::value_type&) [with _Container = std::vector<long long int>]’ at /usr/include/c++/12/bits/stl_iterator.h:735:22,
inlined from ‘static _OI std::__copy_move<false, false, std::random_access_iterator_tag>::__copy_m(_II, _II, _OI) [with _II = long long int*; _OI = std::back_insert_iterator<std::vector<long long int> >]’ at /usr/include/c++/12/bits/stl_algobase.h:385:18,
inlined from ‘_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = long long int*; _OI = back_insert_iterator<vector<long long int> >]’ at /usr/include/c++/12/bits/stl_algobase.h:495:30,
inlined from ‘_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = long long int*; _OI = back_insert_iterator<vector<long long int> >]’ at /usr/include/c++/12/bits/stl_algobase.h:522:42,
inlined from ‘_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = long long int*; _OI = back_insert_iterator<vector<long long int> >]’ at /usr/include/c++/12/bits/stl_algobase.h:529:31,
inlined from ‘_OI std::copy(_II, _II, _OI) [with _II = long long int*; _OI = back_insert_iterator<vector<long long int> >]’ at /usr/include/c++/12/bits/stl_algobase.h:620:7,
inlined from ‘ncbi::CRef<ncbi::blast::CBl2Seq> bl2seq::s_SetupWithMultipleQueriesAndSubjects(bool, bool, ncbi::blast::EProgram)’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1098:13:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘std::back_insert_iterator<_Container>& std::back_insert_iterator<_Container>::operator=(const typename _Container::value_type&) [with _Container = std::vector<long long int>]’ at /usr/include/c++/12/bits/stl_iterator.h:735:22,
inlined from ‘static _OI std::__copy_move<false, false, std::random_access_iterator_tag>::__copy_m(_II, _II, _OI) [with _II = long long int*; _OI = std::back_insert_iterator<std::vector<long long int> >]’ at /usr/include/c++/12/bits/stl_algobase.h:385:18,
inlined from ‘_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = long long int*; _OI = back_insert_iterator<vector<long long int> >]’ at /usr/include/c++/12/bits/stl_algobase.h:495:30,
inlined from ‘_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = long long int*; _OI = back_insert_iterator<vector<long long int> >]’ at /usr/include/c++/12/bits/stl_algobase.h:522:42,
inlined from ‘_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = long long int*; _OI = back_insert_iterator<vector<long long int> >]’ at /usr/include/c++/12/bits/stl_algobase.h:529:31,
inlined from ‘_OI std::copy(_II, _II, _OI) [with _II = long long int*; _OI = back_insert_iterator<vector<long long int> >]’ at /usr/include/c++/12/bits/stl_algobase.h:620:7,
inlined from ‘ncbi::CRef<ncbi::blast::CBl2Seq> bl2seq::s_SetupWithMultipleQueriesAndSubjects(bool, bool, ncbi::blast::EProgram)’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1104:13:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘std::back_insert_iterator<_Container>& std::back_insert_iterator<_Container>::operator=(const typename _Container::value_type&) [with _Container = std::vector<long long int>]’ at /usr/include/c++/12/bits/stl_iterator.h:735:22,
inlined from ‘static _OI std::__copy_move<false, false, std::random_access_iterator_tag>::__copy_m(_II, _II, _OI) [with _II = long long int*; _OI = std::back_insert_iterator<std::vector<long long int> >]’ at /usr/include/c++/12/bits/stl_algobase.h:385:18,
inlined from ‘_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = long long int*; _OI = back_insert_iterator<vector<long long int> >]’ at /usr/include/c++/12/bits/stl_algobase.h:495:30,
inlined from ‘_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = long long int*; _OI = back_insert_iterator<vector<long long int> >]’ at /usr/include/c++/12/bits/stl_algobase.h:522:42,
inlined from ‘_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = long long int*; _OI = back_insert_iterator<vector<long long int> >]’ at /usr/include/c++/12/bits/stl_algobase.h:529:31,
inlined from ‘_OI std::copy(_II, _II, _OI) [with _II = long long int*; _OI = back_insert_iterator<vector<long long int> >]’ at /usr/include/c++/12/bits/stl_algobase.h:620:7,
inlined from ‘ncbi::CRef<ncbi::blast::CBl2Seq> bl2seq::s_SetupWithMultipleQueriesAndSubjects(bool, bool, ncbi::blast::EProgram)’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1108:13:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair<long long int, long int>}; _Tp = std::pair<long long int, long int>; _Alloc = std::allocator<std::pair<long long int, long int> >]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<std::pair<long long int, long int> >::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<long long int, long int>}; _Tp = std::pair<long long int, long int>; _Alloc = std::allocator<std::pair<long long int, long int> >]’:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, long int>*, std::vector<std::pair<long long int, long int> > >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp:40:
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/mod_reader.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp:65:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp: In static member function ‘static void CRedoAlignmentTestFixture::runRedoAlignmentCoreUnitTest(EBlastProgramType, ncbi::objects::CSeq_id&, ncbi::objects::CSeq_id&, BlastHSPList*, const BlastHSPList*, Int8, ECompoAdjustModes, bool, double, int)’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp:210:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
210 | auto_ptr<SSeqLoc> qsl(CTestObjMgr::Instance().CreateSSeqLoc(qid));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp:211:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
211 | auto_ptr<SSeqLoc> ssl(CTestObjMgr::Instance().CreateSSeqLoc(sid));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp: In member function ‘void RedoAlignment::testRedoAlignmentWithCompBasedStatsBadlyBiasedSequence::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp:636:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
636 | auto_ptr<SSeqLoc> ssl(CTestObjMgr::Instance().CreateSSeqLoc(subj_id));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<long long int, long int>}; _Tp = std::pair<long long int, long int>; _Alloc = std::allocator<std::pair<long long int, long int> >]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair<long long int, long int>; _Alloc = std::allocator<std::pair<long long int, long int> >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘void blastinput::ReadMultipleGis::test_method()’ at /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:1320:24:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, long int>*, std::vector<std::pair<long long int, long int> > >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -I/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/../../api -I/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/../../core -DNCBI_APP_BUILT_AS=redoalignment_unit_test /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp -o redoalignment_unit_test.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie redoalignment_unit_test.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o redoalignment_unit_test
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f redoalignment_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f redoalignment_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin/redoalignment_unit_test
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -I/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=psiblast_unit_test /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/psiblast_unit_test.cpp -o psiblast_unit_test.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie psiblast_unit_test.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lseqalign_util -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o psiblast_unit_test
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f psiblast_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin/psiblast_unit_test
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/blast_format/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=blast_format_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
cd algo/blast/unit_tests/blastdb/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=bdbloader_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/blastdb'
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/blast_format'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/blastdb'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/blast_format'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/blastdb'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/blast_format'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/blast_format'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/blastdb'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/blast_format'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/blastdb'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/blast_format TMPL=blast_format_unit_test -w -j4 --jobserver-auth=7,8 all
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/blastdb TMPL=bdbloader_unit_test -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp:53:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp:47:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp:51:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp:51:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:55:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbictype.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistre.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_stack.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp:35:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbictype.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistre.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_stack.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:35:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbictype.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistre.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_stack.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp:35:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/data_loader.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp:35:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:38:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp:40:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_seqinfosrc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/seqinfosrc_seqdb.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp:41:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/serial/serialbase.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objects/seqloc/Seq_loc_.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objects/seqloc/Seq_loc.hpp:44,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp:35:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp:40:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:40:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/annot_types_ci.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objmgr/feat_ci.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:50,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp:42:
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:41:
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp:41:
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp: In function ‘void s_LoadSeqAlignsFromFile(ncbi::objects::CSeq_align_set&, const std::string&)’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp:241:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
241 | auto_ptr<CObjectIStream> asn_in(CObjectIStream::Open(fname, eSerial_AsnText));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/vecscreen_run.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp:48:
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
108 | auto_ptr<CMemoryFile> m_memGi2GeneFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
111 | auto_ptr<CMemoryFile> m_memGene2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
114 | auto_ptr<CMemoryFile> m_memGi2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
117 | auto_ptr<CMemoryFile> m_memGene2GiFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1554 | static auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blastfmtutil.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp:46:
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
108 | auto_ptr<CMemoryFile> m_memGi2GeneFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
111 | auto_ptr<CMemoryFile> m_memGene2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
114 | auto_ptr<CMemoryFile> m_memGi2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
117 | auto_ptr<CMemoryFile> m_memGene2GiFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1554 | static auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/build_archive.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:52:
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
743 | auto_ptr<CObjectIStream> m_ObjectStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blastfmtutil.hpp:41:
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
654 | auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp: In member function ‘void blastfmtutil::GetAlnScoresAndGetScoreString::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp:168:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
168 | auto_ptr<CObjectIStream> in(CObjectIStream::Open(eSerial_AsnText, is));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp: In member function ‘void blastfmtutil::GetSubjectQueryCoverageScore::test_method()’:
/<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp:201:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
201 | auto_ptr<CObjectIStream> in(CObjectIStream::Open(eSerial_AsnText, is));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/cgi/cgictx.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:41,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:49,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/blast_format/blast_format_unit_test.cpp:54:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: note: in definition of macro ‘NCBI_BUILD_TIME’
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/blastdb'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -I../ -DNCBI_APP_BUILT_AS=bdbloader_unit_test /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp -o bdbloader_unit_test.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie bdbloader_unit_test.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o bdbloader_unit_test
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f bdbloader_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f bdbloader_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin/bdbloader_unit_test
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/blastdb'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/blastdb'
cd app/blast/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=blast_formatter LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/app/blast TMPL=blast_formatter -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/app/blast/blast_formatter.cpp:35:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/cgi/cgictx.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:41,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:49,
from /<<PKGBUILDDIR>>/c++/src/app/blast/blast_formatter.cpp:41:
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/remote_blast.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/app/blast/blast_formatter.cpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiargs.hpp:84,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp_api.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:42:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
743 | auto_ptr<CObjectIStream> m_ObjectStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/app/blast/blast_formatter.cpp:40:
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
65 | auto_ptr<CNcbiOstream> m_FileStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/tabular.hpp:41,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:47:
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
108 | auto_ptr<CMemoryFile> m_memGi2GeneFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
111 | auto_ptr<CMemoryFile> m_memGene2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
114 | auto_ptr<CMemoryFile> m_memGi2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
117 | auto_ptr<CMemoryFile> m_memGene2GiFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1554 | static auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/blast_format/blast_format_unit_test.cpp:40:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbictype.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistre.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_stack.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/blast_format/blast_format_unit_test.cpp:35:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/showalign.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:48:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
654 | auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
449 | auto_ptr<CNcbiIfstream> m_ConfigFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
450 | auto_ptr<CNcbiRegistry> m_Reg;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/blast_format/blast_format_unit_test.cpp:41:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:53:
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
156 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
157 | auto_ptr<CCompressOStream> m_CompressOStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
875 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
414 | auto_ptr<CBlast_SAM_Formatter> m_SamFormatter;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_loadlock.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/reader.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33,
from /<<PKGBUILDDIR>>/c++/src/app/blast/blast_formatter.cpp:45:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
771 | auto_ptr<SBaseTSE> m_BaseTSE;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/blast_format/blast_format_unit_test.cpp:42:
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/app/blast/blast_formatter.cpp: In member function ‘virtual void CBlastFormatterApp::Init()’:
/<<PKGBUILDDIR>>/c++/src/app/blast/blast_formatter.cpp:116:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
116 | auto_ptr<CArgDescriptions> arg_desc(new CArgDescriptions);
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/tabular.hpp:41,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:47:
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
108 | auto_ptr<CMemoryFile> m_memGi2GeneFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
111 | auto_ptr<CMemoryFile> m_memGene2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
114 | auto_ptr<CMemoryFile> m_memGi2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
117 | auto_ptr<CMemoryFile> m_memGene2GiFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1554 | static auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:48:
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
654 | auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
449 | auto_ptr<CNcbiIfstream> m_ConfigFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
450 | auto_ptr<CNcbiRegistry> m_Reg;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:46,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:53:
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
65 | auto_ptr<CNcbiOstream> m_FileStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
156 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
157 | auto_ptr<CCompressOStream> m_CompressOStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
875 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
414 | auto_ptr<CBlast_SAM_Formatter> m_SamFormatter;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/mod_reader.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_async_format.hpp:40,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/blast_format/blast_format_unit_test.cpp:55:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/build_archive.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/blast_format/blast_format_unit_test.cpp:58:
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
743 | auto_ptr<CObjectIStream> m_ObjectStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=blast_formatter /<<PKGBUILDDIR>>/c++/src/app/blast/blast_formatter.cpp -o blast_formatter.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blast_formatter.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o blast_formatter
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_formatter /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f blast_formatter /<<PKGBUILDDIR>>/c++/BUILD/bin/blast_formatter
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
cd app/blast/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=blast_report LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/app/blast TMPL=blast_report -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/app/blast/blast_report.cpp:35:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/cgi/cgictx.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:41,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:49,
from /<<PKGBUILDDIR>>/c++/src/app/blast/blast_report.cpp:41:
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/blast_format'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blast_format_unit_test /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp -o seqalignfilter_unit_test.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blast_format_unit_test /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp -o blastfmtutil_unit_test.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blast_format_unit_test /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp -o build_archive_unit_test.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blast_format_unit_test /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp -o vecscreen_run_unit_test.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blast_format_unit_test /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/blast_format/blast_format_unit_test.cpp -o blast_format_unit_test.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie seqalignfilter_unit_test.o blastfmtutil_unit_test.o build_archive_unit_test.o vecscreen_run_unit_test.o blast_format_unit_test.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o blast_format_unit_test
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_format_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f blast_format_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin/blast_format_unit_test
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/blast_format'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/blast_format'
cd app/blast/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=blastn LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/app/blast TMPL=blastn -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/app/blast/blastn_node.cpp:35:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/app/blast/blastn_app.cpp:35:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/cgi/cgictx.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:41,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:49,
from /<<PKGBUILDDIR>>/c++/src/app/blast/blastn_node.cpp:40:
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/cgi/cgictx.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:41,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:49,
from /<<PKGBUILDDIR>>/c++/src/app/blast/blastn_app.cpp:41:
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/remote_blast.hpp:36,
from /<<PKGBUILDDIR>>/c++/src/app/blast/blast_report.cpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiargs.hpp:84,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp_api.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:42:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
743 | auto_ptr<CObjectIStream> m_ObjectStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/app/blast/blast_report.cpp:40:
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
65 | auto_ptr<CNcbiOstream> m_FileStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/tabular.hpp:41,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:47:
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
108 | auto_ptr<CMemoryFile> m_memGi2GeneFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
111 | auto_ptr<CMemoryFile> m_memGene2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
114 | auto_ptr<CMemoryFile> m_memGi2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
117 | auto_ptr<CMemoryFile> m_memGene2GiFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1554 | static auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/query_data.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/setup_factory.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/prelim_stage.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/local_blast.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/app/blast/blastn_node.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiargs.hpp:84,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp_api.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:42:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/query_data.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/setup_factory.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/prelim_stage.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/local_blast.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/app/blast/blastn_app.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiargs.hpp:84,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp_api.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:42:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/showalign.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:48:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
654 | auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
449 | auto_ptr<CNcbiIfstream> m_ConfigFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
450 | auto_ptr<CNcbiRegistry> m_Reg;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/app/blast/blastn_node.cpp:37:
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
743 | auto_ptr<CObjectIStream> m_ObjectStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/app/blast/blastn_app.cpp:37:
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
743 | auto_ptr<CObjectIStream> m_ObjectStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/app/blast/blastn_node.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:53:
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
156 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
157 | auto_ptr<CCompressOStream> m_CompressOStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
875 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/app/blast/blastn_app.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
414 | auto_ptr<CBlast_SAM_Formatter> m_SamFormatter;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/app/blast/blast_report.cpp: In member function ‘virtual void CBlastReportApp::Init()’:
/<<PKGBUILDDIR>>/c++/src/app/blast/blast_report.cpp:107:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
107 | auto_ptr<CArgDescriptions> arg_desc(new CArgDescriptions);
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/mod_reader.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/mod_reader.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:46,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blastn_args.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/app/blast/blastn_app.cpp:39:
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
65 | auto_ptr<CNcbiOstream> m_FileStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
156 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
157 | auto_ptr<CCompressOStream> m_CompressOStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/tabular.hpp:41,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:47:
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
108 | auto_ptr<CMemoryFile> m_memGi2GeneFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
111 | auto_ptr<CMemoryFile> m_memGene2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
114 | auto_ptr<CMemoryFile> m_memGi2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
117 | auto_ptr<CMemoryFile> m_memGene2GiFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
875 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1554 | static auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:48:
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
654 | auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/tabular.hpp:41,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:47:
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
108 | auto_ptr<CMemoryFile> m_memGi2GeneFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
111 | auto_ptr<CMemoryFile> m_memGene2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
114 | auto_ptr<CMemoryFile> m_memGi2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
117 | auto_ptr<CMemoryFile> m_memGene2GiFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1554 | static auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:48:
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
654 | auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
449 | auto_ptr<CNcbiIfstream> m_ConfigFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
450 | auto_ptr<CNcbiRegistry> m_Reg;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
449 | auto_ptr<CNcbiIfstream> m_ConfigFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
450 | auto_ptr<CNcbiRegistry> m_Reg;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:46,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:53:
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
65 | auto_ptr<CNcbiOstream> m_FileStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
156 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
157 | auto_ptr<CCompressOStream> m_CompressOStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
875 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
414 | auto_ptr<CBlast_SAM_Formatter> m_SamFormatter;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
414 | auto_ptr<CBlast_SAM_Formatter> m_SamFormatter;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/<<PKGBUILDDIR>>/c++/src/app/blast/blastn_app.cpp: In member function ‘int CBlastnApp::x_RunMTBySplitQuery()’:
/<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:197:8: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
197 | do if (NCBI_NS_NCBI::IsVisibleDiagPostLevel(NCBI_NS_NCBI::eDiag_##severity)) \
| ^~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:200:28: note: in expansion of macro ‘SEVERITY_POST’
200 | #define INFO_POST(message) SEVERITY_POST(Info, message)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/app/blast/blastn_app.cpp:320:17: note: in expansion of macro ‘INFO_POST’
320 | INFO_POST("Batch Size: " << batch_size);
| ^~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:198:44: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
198 | ERR_POST(severity << message); while(0)
| ^~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:200:28: note: in expansion of macro ‘SEVERITY_POST’
200 | #define INFO_POST(message) SEVERITY_POST(Info, message)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/app/blast/blastn_app.cpp:320:17: note: in expansion of macro ‘INFO_POST’
320 | INFO_POST("Batch Size: " << batch_size);
| ^~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=blast_report /<<PKGBUILDDIR>>/c++/src/app/blast/blast_report.cpp -o blast_report.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blast_report.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o blast_report
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_report /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f blast_report /<<PKGBUILDDIR>>/c++/BUILD/bin/blast_report
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
cd app/blast/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=blastp LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/app/blast TMPL=blastp -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/app/blast/blastp_app.cpp:35:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/app/blast/blastp_node.cpp:35:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/cgi/cgictx.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:41,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:49,
from /<<PKGBUILDDIR>>/c++/src/app/blast/blastp_app.cpp:41:
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/cgi/cgictx.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:41,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:49,
from /<<PKGBUILDDIR>>/c++/src/app/blast/blastp_node.cpp:40:
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=blastn /<<PKGBUILDDIR>>/c++/src/app/blast/blastn_node.cpp -o blastn_node.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=blastn /<<PKGBUILDDIR>>/c++/src/app/blast/blastn_app.cpp -o blastn_app.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blastn_node.o blastn_app.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lblast_app_util -lxformat -lxcleanup -lvalid -lgbseq -lmlacli -lmla -lmedlars -lpubmed -lsubmit -lxregexp -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o blastn
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastn /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f blastn /<<PKGBUILDDIR>>/c++/BUILD/bin/blastn
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
cd app/blast/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=blastx LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/app/blast TMPL=blastx -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/query_data.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/setup_factory.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/prelim_stage.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/local_blast.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/app/blast/blastp_app.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiargs.hpp:84,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp_api.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:42:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/app/blast/blastx_app.cpp:35:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/query_data.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/setup_factory.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/prelim_stage.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/local_blast.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/app/blast/blastp_node.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiargs.hpp:84,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp_api.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:42:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/app/blast/blastx_node.cpp:35:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/cgi/cgictx.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:41,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:49,
from /<<PKGBUILDDIR>>/c++/src/app/blast/blastx_app.cpp:41:
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/cgi/cgictx.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:41,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:49,
from /<<PKGBUILDDIR>>/c++/src/app/blast/blastx_node.cpp:40:
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/app/blast/blastp_app.cpp:37:
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
743 | auto_ptr<CObjectIStream> m_ObjectStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/app/blast/blastp_node.cpp:37:
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
743 | auto_ptr<CObjectIStream> m_ObjectStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/app/blast/blastp_app.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/app/blast/blastp_node.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/mod_reader.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:46,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blastp_args.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/app/blast/blastp_app.cpp:39:
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
65 | auto_ptr<CNcbiOstream> m_FileStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/mod_reader.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
156 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
157 | auto_ptr<CCompressOStream> m_CompressOStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
875 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/tabular.hpp:41,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:47:
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
108 | auto_ptr<CMemoryFile> m_memGi2GeneFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
111 | auto_ptr<CMemoryFile> m_memGene2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
114 | auto_ptr<CMemoryFile> m_memGi2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
117 | auto_ptr<CMemoryFile> m_memGene2GiFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1554 | static auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/tabular.hpp:41,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:47:
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
108 | auto_ptr<CMemoryFile> m_memGi2GeneFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
111 | auto_ptr<CMemoryFile> m_memGene2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
114 | auto_ptr<CMemoryFile> m_memGi2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
117 | auto_ptr<CMemoryFile> m_memGene2GiFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1554 | static auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:48:
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
654 | auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:48:
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
654 | auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
449 | auto_ptr<CNcbiIfstream> m_ConfigFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
450 | auto_ptr<CNcbiRegistry> m_Reg;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
449 | auto_ptr<CNcbiIfstream> m_ConfigFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
450 | auto_ptr<CNcbiRegistry> m_Reg;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/query_data.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/setup_factory.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/prelim_stage.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/local_blast.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/app/blast/blastx_node.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiargs.hpp:84,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp_api.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:42:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/query_data.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/setup_factory.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/prelim_stage.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/local_blast.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/app/blast/blastx_app.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiargs.hpp:84,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp_api.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:42:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:46,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:53:
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
65 | auto_ptr<CNcbiOstream> m_FileStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
156 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
157 | auto_ptr<CCompressOStream> m_CompressOStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
875 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
414 | auto_ptr<CBlast_SAM_Formatter> m_SamFormatter;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
414 | auto_ptr<CBlast_SAM_Formatter> m_SamFormatter;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/<<PKGBUILDDIR>>/c++/src/app/blast/blastp_app.cpp: In member function ‘int CBlastpApp::x_RunMTBySplitQuery()’:
/<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:197:8: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
197 | do if (NCBI_NS_NCBI::IsVisibleDiagPostLevel(NCBI_NS_NCBI::eDiag_##severity)) \
| ^~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:200:28: note: in expansion of macro ‘SEVERITY_POST’
200 | #define INFO_POST(message) SEVERITY_POST(Info, message)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/app/blast/blastp_app.cpp:275:17: note: in expansion of macro ‘INFO_POST’
275 | INFO_POST("Batch Size: " << batch_size);
| ^~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:198:44: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
198 | ERR_POST(severity << message); while(0)
| ^~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:200:28: note: in expansion of macro ‘SEVERITY_POST’
200 | #define INFO_POST(message) SEVERITY_POST(Info, message)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/app/blast/blastp_app.cpp:275:17: note: in expansion of macro ‘INFO_POST’
275 | INFO_POST("Batch Size: " << batch_size);
| ^~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/app/blast/blastx_node.cpp:37:
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
743 | auto_ptr<CObjectIStream> m_ObjectStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/app/blast/blastx_app.cpp:37:
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
743 | auto_ptr<CObjectIStream> m_ObjectStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/app/blast/blastx_node.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/app/blast/blastx_app.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/mod_reader.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/mod_reader.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:46,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blastx_args.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/app/blast/blastx_app.cpp:39:
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
65 | auto_ptr<CNcbiOstream> m_FileStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
156 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
157 | auto_ptr<CCompressOStream> m_CompressOStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
875 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/tabular.hpp:41,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:47:
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
108 | auto_ptr<CMemoryFile> m_memGi2GeneFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
111 | auto_ptr<CMemoryFile> m_memGene2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
114 | auto_ptr<CMemoryFile> m_memGi2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
117 | auto_ptr<CMemoryFile> m_memGene2GiFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1554 | static auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/tabular.hpp:41,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:47:
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
108 | auto_ptr<CMemoryFile> m_memGi2GeneFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
111 | auto_ptr<CMemoryFile> m_memGene2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
114 | auto_ptr<CMemoryFile> m_memGi2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
117 | auto_ptr<CMemoryFile> m_memGene2GiFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1554 | static auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:48:
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
654 | auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:48:
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
654 | auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
449 | auto_ptr<CNcbiIfstream> m_ConfigFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
450 | auto_ptr<CNcbiRegistry> m_Reg;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
449 | auto_ptr<CNcbiIfstream> m_ConfigFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
450 | auto_ptr<CNcbiRegistry> m_Reg;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:46,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:53:
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
65 | auto_ptr<CNcbiOstream> m_FileStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
156 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
157 | auto_ptr<CCompressOStream> m_CompressOStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
875 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
414 | auto_ptr<CBlast_SAM_Formatter> m_SamFormatter;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
414 | auto_ptr<CBlast_SAM_Formatter> m_SamFormatter;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/<<PKGBUILDDIR>>/c++/src/app/blast/blastx_app.cpp: In member function ‘int CBlastxApp::x_RunMTBySplitQuery()’:
/<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:197:8: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
197 | do if (NCBI_NS_NCBI::IsVisibleDiagPostLevel(NCBI_NS_NCBI::eDiag_##severity)) \
| ^~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:200:28: note: in expansion of macro ‘SEVERITY_POST’
200 | #define INFO_POST(message) SEVERITY_POST(Info, message)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/app/blast/blastx_app.cpp:274:17: note: in expansion of macro ‘INFO_POST’
274 | INFO_POST("Batch Size: " << batch_size);
| ^~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:198:44: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
198 | ERR_POST(severity << message); while(0)
| ^~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:200:28: note: in expansion of macro ‘SEVERITY_POST’
200 | #define INFO_POST(message) SEVERITY_POST(Info, message)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/app/blast/blastx_app.cpp:274:17: note: in expansion of macro ‘INFO_POST’
274 | INFO_POST("Batch Size: " << batch_size);
| ^~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=blastp /<<PKGBUILDDIR>>/c++/src/app/blast/blastp_node.cpp -o blastp_node.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=blastp /<<PKGBUILDDIR>>/c++/src/app/blast/blastp_app.cpp -o blastp_app.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blastp_node.o blastp_app.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o blastp
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastp /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f blastp /<<PKGBUILDDIR>>/c++/BUILD/bin/blastp
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=blastx /<<PKGBUILDDIR>>/c++/src/app/blast/blastx_node.cpp -o blastx_node.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=blastx /<<PKGBUILDDIR>>/c++/src/app/blast/blastx_app.cpp -o blastx_app.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blastx_node.o blastx_app.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o blastx
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastx /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f blastx /<<PKGBUILDDIR>>/c++/BUILD/bin/blastx
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
cd app/blast/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=deltablast LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
cd app/blast/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=psiblast LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/app/blast TMPL=deltablast -w -j4 --jobserver-auth=7,8 all
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/app/blast TMPL=psiblast -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/app/blast/psiblast_app.cpp:35:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/app/blast/deltablast_app.cpp:36:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/cgi/cgictx.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:41,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:49,
from /<<PKGBUILDDIR>>/c++/src/app/blast/psiblast_app.cpp:45:
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
In file included from /<<PKGBUILDDIR>>/c++/include/cgi/cgictx.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:41,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:49,
from /<<PKGBUILDDIR>>/c++/src/app/blast/deltablast_app.cpp:45:
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/query_data.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/setup_factory.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/deltablast.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/app/blast/deltablast_app.cpp:37:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/src/app/blast/deltablast_app.cpp:35:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_options.hpp:40,
from /<<PKGBUILDDIR>>/c++/src/app/blast/psiblast_app.cpp:37:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiargs.hpp:84,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp_api.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:42:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/app/blast/psiblast_app.cpp:40:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/app/blast/deltablast_app.cpp:39:
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
743 | auto_ptr<CObjectIStream> m_ObjectStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/app/blast/deltablast_app.cpp:41:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/mod_reader.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:46,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/psiblast_args.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/app/blast/psiblast_app.cpp:41:
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
65 | auto_ptr<CNcbiOstream> m_FileStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
156 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
157 | auto_ptr<CCompressOStream> m_CompressOStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
875 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/mod_reader.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:46,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/deltablast_args.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/app/blast/deltablast_app.cpp:42:
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
65 | auto_ptr<CNcbiOstream> m_FileStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
156 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
157 | auto_ptr<CCompressOStream> m_CompressOStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/app/blast/psiblast_app.cpp:42:
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
743 | auto_ptr<CObjectIStream> m_ObjectStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
875 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/tabular.hpp:41,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:47:
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
108 | auto_ptr<CMemoryFile> m_memGi2GeneFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
111 | auto_ptr<CMemoryFile> m_memGene2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
114 | auto_ptr<CMemoryFile> m_memGi2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
117 | auto_ptr<CMemoryFile> m_memGene2GiFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1554 | static auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/tabular.hpp:41,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:47:
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
108 | auto_ptr<CMemoryFile> m_memGi2GeneFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
111 | auto_ptr<CMemoryFile> m_memGene2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
114 | auto_ptr<CMemoryFile> m_memGi2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
117 | auto_ptr<CMemoryFile> m_memGene2GiFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1554 | static auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:48:
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
654 | auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:48:
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
654 | auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
449 | auto_ptr<CNcbiIfstream> m_ConfigFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
450 | auto_ptr<CNcbiRegistry> m_Reg;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
449 | auto_ptr<CNcbiIfstream> m_ConfigFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
450 | auto_ptr<CNcbiRegistry> m_Reg;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
414 | auto_ptr<CBlast_SAM_Formatter> m_SamFormatter;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
414 | auto_ptr<CBlast_SAM_Formatter> m_SamFormatter;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=psiblast /<<PKGBUILDDIR>>/c++/src/app/blast/psiblast_app.cpp -o psiblast_app.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie psiblast_app.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o psiblast
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f psiblast /<<PKGBUILDDIR>>/c++/BUILD/bin/psiblast
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
cd app/blast/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=rpsblast LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/app/blast TMPL=rpsblast -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=deltablast /<<PKGBUILDDIR>>/c++/src/app/blast/deltablast_app.cpp -o deltablast_app.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie deltablast_app.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o deltablast
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f deltablast /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f deltablast /<<PKGBUILDDIR>>/c++/BUILD/bin/deltablast
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
cd app/blast/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=rpstblastn LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/app/blast/rpsblast_node.cpp:35:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/app/blast TMPL=rpstblastn -w -j4 --jobserver-auth=7,8 all
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/app/blast/rpsblast_app.cpp:35:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/cgi/cgictx.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:41,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:49,
from /<<PKGBUILDDIR>>/c++/src/app/blast/rpsblast_node.cpp:41:
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/app/blast/rpstblastn_node.cpp:35:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/app/blast/rpstblastn_app.cpp:35:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/cgi/cgictx.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:41,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:49,
from /<<PKGBUILDDIR>>/c++/src/app/blast/rpsblast_app.cpp:41:
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/cgi/cgictx.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:41,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:49,
from /<<PKGBUILDDIR>>/c++/src/app/blast/rpstblastn_node.cpp:41:
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/cgi/cgictx.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:41,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:49,
from /<<PKGBUILDDIR>>/c++/src/app/blast/rpstblastn_app.cpp:41:
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=bl2seq_unit_test /<<PKGBUILDDIR>>/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp -o bl2seq_unit_test.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie bl2seq_unit_test.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o bl2seq_unit_test
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f bl2seq_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f bl2seq_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin/bl2seq_unit_test
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
cd app/blast/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=seedtop LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/app/blast TMPL=seedtop -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/app/blast/seedtop_app.cpp:35:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/cgi/cgictx.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:41,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:49,
from /<<PKGBUILDDIR>>/c++/src/app/blast/seedtop_app.cpp:40:
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/query_data.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/setup_factory.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/prelim_stage.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/local_blast.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/app/blast/rpsblast_app.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiargs.hpp:84,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp_api.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:42:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/query_data.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/setup_factory.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/prelim_stage.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/local_blast.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/app/blast/rpsblast_node.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiargs.hpp:84,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp_api.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:42:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/query_data.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/setup_factory.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/prelim_stage.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/local_blast.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/app/blast/rpstblastn_node.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiargs.hpp:84,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp_api.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:42:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/query_data.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/setup_factory.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/prelim_stage.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/local_blast.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/app/blast/rpstblastn_app.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiargs.hpp:84,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp_api.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:42:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/app/blast/rpsblast_app.cpp:37:
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
743 | auto_ptr<CObjectIStream> m_ObjectStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/app/blast/rpsblast_app.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/seedtop.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/app/blast/seedtop_app.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiargs.hpp:84,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp_api.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:42:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/app/blast/rpsblast_node.cpp:37:
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
743 | auto_ptr<CObjectIStream> m_ObjectStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/app/blast/rpstblastn_node.cpp:37:
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
743 | auto_ptr<CObjectIStream> m_ObjectStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/app/blast/rpsblast_node.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/app/blast/rpstblastn_app.cpp:37:
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
743 | auto_ptr<CObjectIStream> m_ObjectStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/app/blast/rpstblastn_node.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/app/blast/rpstblastn_app.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/mod_reader.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:46,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/rpsblast_args.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/app/blast/rpsblast_app.cpp:39:
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
65 | auto_ptr<CNcbiOstream> m_FileStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
156 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
157 | auto_ptr<CCompressOStream> m_CompressOStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/app/blast/seedtop_app.cpp:37:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
875 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/mod_reader.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/mod_reader.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/tabular.hpp:41,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:47:
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
108 | auto_ptr<CMemoryFile> m_memGi2GeneFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
111 | auto_ptr<CMemoryFile> m_memGene2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
114 | auto_ptr<CMemoryFile> m_memGi2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
117 | auto_ptr<CMemoryFile> m_memGene2GiFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1554 | static auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/mod_reader.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:46,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/rpsblast_args.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/app/blast/rpsblast_node.cpp:39:
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
65 | auto_ptr<CNcbiOstream> m_FileStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:48:
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
654 | auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
156 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
157 | auto_ptr<CCompressOStream> m_CompressOStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:46,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/rpstblastn_args.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/app/blast/rpstblastn_node.cpp:39:
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
65 | auto_ptr<CNcbiOstream> m_FileStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
875 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:46,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/rpstblastn_args.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/app/blast/rpstblastn_app.cpp:39:
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
65 | auto_ptr<CNcbiOstream> m_FileStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
156 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
157 | auto_ptr<CCompressOStream> m_CompressOStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
875 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
156 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
157 | auto_ptr<CCompressOStream> m_CompressOStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
875 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/tabular.hpp:41,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:47:
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
108 | auto_ptr<CMemoryFile> m_memGi2GeneFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
111 | auto_ptr<CMemoryFile> m_memGene2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
114 | auto_ptr<CMemoryFile> m_memGi2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
117 | auto_ptr<CMemoryFile> m_memGene2GiFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1554 | static auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/tabular.hpp:41,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:47:
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
108 | auto_ptr<CMemoryFile> m_memGi2GeneFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
111 | auto_ptr<CMemoryFile> m_memGene2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
114 | auto_ptr<CMemoryFile> m_memGi2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
117 | auto_ptr<CMemoryFile> m_memGene2GiFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1554 | static auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:48:
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
654 | auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/tabular.hpp:41,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:47:
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
108 | auto_ptr<CMemoryFile> m_memGi2GeneFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
111 | auto_ptr<CMemoryFile> m_memGene2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
114 | auto_ptr<CMemoryFile> m_memGi2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
117 | auto_ptr<CMemoryFile> m_memGene2GiFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
449 | auto_ptr<CNcbiIfstream> m_ConfigFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
450 | auto_ptr<CNcbiRegistry> m_Reg;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1554 | static auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:48:
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
654 | auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:48:
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
654 | auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/mod_reader.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
449 | auto_ptr<CNcbiIfstream> m_ConfigFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
450 | auto_ptr<CNcbiRegistry> m_Reg;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:46,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blastp_args.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/app/blast/seedtop_app.cpp:38:
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
65 | auto_ptr<CNcbiOstream> m_FileStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
449 | auto_ptr<CNcbiIfstream> m_ConfigFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
450 | auto_ptr<CNcbiRegistry> m_Reg;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
156 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
157 | auto_ptr<CCompressOStream> m_CompressOStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
449 | auto_ptr<CNcbiIfstream> m_ConfigFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
450 | auto_ptr<CNcbiRegistry> m_Reg;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
875 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/tabular.hpp:41,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:47:
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
108 | auto_ptr<CMemoryFile> m_memGi2GeneFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
111 | auto_ptr<CMemoryFile> m_memGene2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
114 | auto_ptr<CMemoryFile> m_memGi2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
117 | auto_ptr<CMemoryFile> m_memGene2GiFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1554 | static auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:48:
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
654 | auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
414 | auto_ptr<CBlast_SAM_Formatter> m_SamFormatter;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
449 | auto_ptr<CNcbiIfstream> m_ConfigFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
450 | auto_ptr<CNcbiRegistry> m_Reg;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/<<PKGBUILDDIR>>/c++/src/app/blast/rpsblast_app.cpp: In member function ‘int CRPSBlastApp::x_RunMTBySplitQuery()’:
/<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:197:8: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
197 | do if (NCBI_NS_NCBI::IsVisibleDiagPostLevel(NCBI_NS_NCBI::eDiag_##severity)) \
| ^~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:200:28: note: in expansion of macro ‘SEVERITY_POST’
200 | #define INFO_POST(message) SEVERITY_POST(Info, message)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/app/blast/rpsblast_app.cpp:258:9: note: in expansion of macro ‘INFO_POST’
258 | INFO_POST("Batch Size: " << batch_size);
| ^~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:198:44: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
198 | ERR_POST(severity << message); while(0)
| ^~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:200:28: note: in expansion of macro ‘SEVERITY_POST’
200 | #define INFO_POST(message) SEVERITY_POST(Info, message)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/app/blast/rpsblast_app.cpp:258:9: note: in expansion of macro ‘INFO_POST’
258 | INFO_POST("Batch Size: " << batch_size);
| ^~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
414 | auto_ptr<CBlast_SAM_Formatter> m_SamFormatter;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
414 | auto_ptr<CBlast_SAM_Formatter> m_SamFormatter;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
414 | auto_ptr<CBlast_SAM_Formatter> m_SamFormatter;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/<<PKGBUILDDIR>>/c++/src/app/blast/rpstblastn_app.cpp: In member function ‘int CRPSTBlastnApp::x_RunMTBySplitQuery()’:
/<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:197:8: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
197 | do if (NCBI_NS_NCBI::IsVisibleDiagPostLevel(NCBI_NS_NCBI::eDiag_##severity)) \
| ^~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:200:28: note: in expansion of macro ‘SEVERITY_POST’
200 | #define INFO_POST(message) SEVERITY_POST(Info, message)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/app/blast/rpstblastn_app.cpp:251:9: note: in expansion of macro ‘INFO_POST’
251 | INFO_POST("Batch Size: " << batch_size);
| ^~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:198:44: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
198 | ERR_POST(severity << message); while(0)
| ^~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:200:28: note: in expansion of macro ‘SEVERITY_POST’
200 | #define INFO_POST(message) SEVERITY_POST(Info, message)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/app/blast/rpstblastn_app.cpp:251:9: note: in expansion of macro ‘INFO_POST’
251 | INFO_POST("Batch Size: " << batch_size);
| ^~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
414 | auto_ptr<CBlast_SAM_Formatter> m_SamFormatter;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/app/blast/seedtop_app.cpp:41:
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/app/blast/blast_app_util.hpp:45,
from /<<PKGBUILDDIR>>/c++/src/app/blast/seedtop_app.cpp:42:
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
743 | auto_ptr<CObjectIStream> m_ObjectStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/app/blast/seedtop_app.cpp: In member function ‘virtual void CSeedTopApp::Init()’:
/<<PKGBUILDDIR>>/c++/src/app/blast/seedtop_app.cpp:114:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
114 | auto_ptr<CArgDescriptions> arg_desc(new CArgDescriptions);
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=seedtop /<<PKGBUILDDIR>>/c++/src/app/blast/seedtop_app.cpp -o seedtop_app.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie seedtop_app.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o seedtop
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f seedtop /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f seedtop /<<PKGBUILDDIR>>/c++/BUILD/bin/seedtop
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
cd app/blast/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=tblastn LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/app/blast TMPL=tblastn -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/app/blast/tblastn_app.cpp:35:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/app/blast/tblastn_node.cpp:35:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/cgi/cgictx.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:41,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:49,
from /<<PKGBUILDDIR>>/c++/src/app/blast/tblastn_node.cpp:41:
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
In file included from /<<PKGBUILDDIR>>/c++/include/cgi/cgictx.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:41,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:49,
from /<<PKGBUILDDIR>>/c++/src/app/blast/tblastn_app.cpp:42:
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/query_data.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/setup_factory.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/prelim_stage.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/local_blast.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/app/blast/tblastn_app.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/query_data.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/setup_factory.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/prelim_stage.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/local_blast.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/app/blast/tblastn_node.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiargs.hpp:84,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp_api.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:42:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiargs.hpp:84,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp_api.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:42:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/app/blast/tblastn_node.cpp:38:
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
743 | auto_ptr<CObjectIStream> m_ObjectStream;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/app/blast/tblastn_app.cpp:38:
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
743 | auto_ptr<CObjectIStream> m_ObjectStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/app/blast/tblastn_app.cpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/app/blast/tblastn_node.cpp:39:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/mod_reader.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/mod_reader.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:46,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/tblastn_args.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/app/blast/tblastn_app.cpp:40:
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
65 | auto_ptr<CNcbiOstream> m_FileStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
156 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
157 | auto_ptr<CCompressOStream> m_CompressOStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
875 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/tabular.hpp:41,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:47:
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
108 | auto_ptr<CMemoryFile> m_memGi2GeneFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
111 | auto_ptr<CMemoryFile> m_memGene2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
114 | auto_ptr<CMemoryFile> m_memGi2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
117 | auto_ptr<CMemoryFile> m_memGene2GiFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1554 | static auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:48:
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
654 | auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/tabular.hpp:41,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:47:
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
108 | auto_ptr<CMemoryFile> m_memGi2GeneFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
111 | auto_ptr<CMemoryFile> m_memGene2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
114 | auto_ptr<CMemoryFile> m_memGi2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
117 | auto_ptr<CMemoryFile> m_memGene2GiFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1554 | static auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:48:
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
654 | auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
449 | auto_ptr<CNcbiIfstream> m_ConfigFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
450 | auto_ptr<CNcbiRegistry> m_Reg;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
449 | auto_ptr<CNcbiIfstream> m_ConfigFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
450 | auto_ptr<CNcbiRegistry> m_Reg;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:46,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:53:
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
65 | auto_ptr<CNcbiOstream> m_FileStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
156 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
157 | auto_ptr<CCompressOStream> m_CompressOStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
875 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
414 | auto_ptr<CBlast_SAM_Formatter> m_SamFormatter;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
414 | auto_ptr<CBlast_SAM_Formatter> m_SamFormatter;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/<<PKGBUILDDIR>>/c++/src/app/blast/tblastn_app.cpp: In member function ‘int CTblastnApp::x_RunMTBySplitQuery()’:
/<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:197:8: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
197 | do if (NCBI_NS_NCBI::IsVisibleDiagPostLevel(NCBI_NS_NCBI::eDiag_##severity)) \
| ^~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:200:28: note: in expansion of macro ‘SEVERITY_POST’
200 | #define INFO_POST(message) SEVERITY_POST(Info, message)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/app/blast/tblastn_app.cpp:332:17: note: in expansion of macro ‘INFO_POST’
332 | INFO_POST("Batch Size: " << batch_size);
| ^~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:198:44: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
198 | ERR_POST(severity << message); while(0)
| ^~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:200:28: note: in expansion of macro ‘SEVERITY_POST’
200 | #define INFO_POST(message) SEVERITY_POST(Info, message)
| ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/app/blast/tblastn_app.cpp:332:17: note: in expansion of macro ‘INFO_POST’
332 | INFO_POST("Batch Size: " << batch_size);
| ^~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=tblastn /<<PKGBUILDDIR>>/c++/src/app/blast/tblastn_node.cpp -o tblastn_node.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=tblastn /<<PKGBUILDDIR>>/c++/src/app/blast/tblastn_app.cpp -o tblastn_app.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie tblastn_node.o tblastn_app.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o tblastn
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f tblastn /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f tblastn /<<PKGBUILDDIR>>/c++/BUILD/bin/tblastn
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
cd app/blast/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=tblastx LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/app/blast TMPL=tblastx -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=rpstblastn /<<PKGBUILDDIR>>/c++/src/app/blast/rpstblastn_node.cpp -o rpstblastn_node.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=rpstblastn /<<PKGBUILDDIR>>/c++/src/app/blast/rpstblastn_app.cpp -o rpstblastn_app.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie rpstblastn_node.o rpstblastn_app.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o rpstblastn
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f rpstblastn /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f rpstblastn /<<PKGBUILDDIR>>/c++/BUILD/bin/rpstblastn
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
cd app/blastdb/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=blastdb_aliastool LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/app/blastdb TMPL=blastdb_aliastool -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/app/blastdb/blastdb_aliastool.cpp:35:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/app/blast/tblastx_app.cpp:35:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/cgi/cgictx.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:41,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:49,
from /<<PKGBUILDDIR>>/c++/src/app/blast/tblastx_app.cpp:41:
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/sseqloc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/app/blastdb/blastdb_aliastool.cpp:46:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiargs.hpp:84,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp_api.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:42:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input.hpp:40:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:46,
from /<<PKGBUILDDIR>>/c++/src/app/blastdb/../blast/blast_app_util.hpp:40,
from /<<PKGBUILDDIR>>/c++/src/app/blastdb/blastdb_aliastool.cpp:47:
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
65 | auto_ptr<CNcbiOstream> m_FileStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
156 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
157 | auto_ptr<CCompressOStream> m_CompressOStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
875 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/app/blastdb/../blast/blast_app_util.hpp:45:
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
743 | auto_ptr<CObjectIStream> m_ObjectStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blastfmtutil.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/app/blastdb/../blast/blast_app_util.hpp:50:
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
108 | auto_ptr<CMemoryFile> m_memGi2GeneFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
111 | auto_ptr<CMemoryFile> m_memGene2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
114 | auto_ptr<CMemoryFile> m_memGi2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
117 | auto_ptr<CMemoryFile> m_memGene2GiFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1554 | static auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blastfmtutil.hpp:41:
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
654 | auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/app/blastdb/blastdb_aliastool.cpp: In member function ‘virtual void CBlastDBAliasApp::Init()’:
/<<PKGBUILDDIR>>/c++/src/app/blastdb/blastdb_aliastool.cpp:150:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
150 | auto_ptr<CArgDescriptions> arg_desc(new CArgDescriptions);
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:44,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator<long long int>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<long long int>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’,
inlined from ‘void ncbi::CBinaryListBuilder::AppendId(const Int8&)’ at /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_writer/writedb.hpp:478:24,
inlined from ‘int CBlastDBAliasApp::ConvertGiFile(ncbi::CNcbiIstream&, ncbi::CNcbiOstream&, const std::string*, const std::string*) const’ at /<<PKGBUILDDIR>>/c++/src/app/blastdb/blastdb_aliastool.cpp:359:35:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/blast_aux.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/query_data.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/setup_factory.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/prelim_stage.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/local_blast.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/app/blast/tblastx_app.cpp:36:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiargs.hpp:84,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp_api.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:42:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=blastdb_aliastool /<<PKGBUILDDIR>>/c++/src/app/blastdb/blastdb_aliastool.cpp -o blastdb_aliastool.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blastdb_aliastool.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lwritedb -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o blastdb_aliastool
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_aliastool /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f blastdb_aliastool /<<PKGBUILDDIR>>/c++/BUILD/bin/blastdb_aliastool
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
cd app/blastdb/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=blastdb_convert LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/app/blastdb TMPL=blastdb_convert -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/app/blastdb/blastdb_convert.cpp:35:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/app/blast/tblastx_app.cpp:37:
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
743 | auto_ptr<CObjectIStream> m_ObjectStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/app/blast/tblastx_app.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/serial/serialimpl.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/reader_error_codes.hpp:33,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/mod_reader.hpp:35,
from /<<PKGBUILDDIR>>/c++/include/objtools/readers/fasta.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39:
/<<PKGBUILDDIR>>/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
62 | typedef auto_ptr<TDataType> TObjectType;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:46,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/tblastx_args.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/app/blast/tblastx_app.cpp:39:
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
65 | auto_ptr<CNcbiOstream> m_FileStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
156 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
157 | auto_ptr<CCompressOStream> m_CompressOStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
875 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/tabular.hpp:41,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:47:
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
108 | auto_ptr<CMemoryFile> m_memGi2GeneFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
111 | auto_ptr<CMemoryFile> m_memGene2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
114 | auto_ptr<CMemoryFile> m_memGi2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
117 | auto_ptr<CMemoryFile> m_memGene2GiFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1554 | static auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:48:
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
654 | auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
449 | auto_ptr<CNcbiIfstream> m_ConfigFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
450 | auto_ptr<CNcbiRegistry> m_Reg;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
414 | auto_ptr<CBlast_SAM_Formatter> m_SamFormatter;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/sseqloc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/app/blastdb/blastdb_convert.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiargs.hpp:84,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp_api.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:42:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input.hpp:40:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:46,
from /<<PKGBUILDDIR>>/c++/src/app/blastdb/../blast/blast_app_util.hpp:40,
from /<<PKGBUILDDIR>>/c++/src/app/blastdb/blastdb_convert.cpp:49:
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
65 | auto_ptr<CNcbiOstream> m_FileStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
156 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
157 | auto_ptr<CCompressOStream> m_CompressOStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
875 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/app/blastdb/../blast/blast_app_util.hpp:45:
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
743 | auto_ptr<CObjectIStream> m_ObjectStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blastfmtutil.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/app/blastdb/../blast/blast_app_util.hpp:50:
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
108 | auto_ptr<CMemoryFile> m_memGi2GeneFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
111 | auto_ptr<CMemoryFile> m_memGene2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
114 | auto_ptr<CMemoryFile> m_memGi2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
117 | auto_ptr<CMemoryFile> m_memGene2GiFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1554 | static auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blastfmtutil.hpp:41:
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
654 | auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/app/blastdb/blastdb_convert.cpp: In member function ‘virtual void CBlastdbConvertApp::Init()’:
/<<PKGBUILDDIR>>/c++/src/app/blastdb/blastdb_convert.cpp:119:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
119 | auto_ptr<CArgDescriptions> arg_desc(new CArgDescriptions);
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=tblastx /<<PKGBUILDDIR>>/c++/src/app/blast/tblastx_app.cpp -o tblastx_app.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie tblastx_app.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o tblastx
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f tblastx /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f tblastx /<<PKGBUILDDIR>>/c++/BUILD/bin/tblastx
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
cd app/blastdb/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=blastdb_path LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/app/blastdb TMPL=blastdb_path -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/app/blastdb/blastdb_path.cpp:35:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=blastdb_convert /<<PKGBUILDDIR>>/c++/src/app/blastdb/blastdb_convert.cpp -o blastdb_convert.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blastdb_convert.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lwritedb -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o blastdb_convert
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_convert /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f blastdb_convert /<<PKGBUILDDIR>>/c++/BUILD/bin/blastdb_convert
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
cd app/blastdb/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=blastdbcheck LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/app/blastdb TMPL=blastdbcheck -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/app/blastdb/blastdbcheck.cpp:34:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/sseqloc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/app/blastdb/blastdb_path.cpp:38:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiargs.hpp:84,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp_api.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:42:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input.hpp:40:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:46,
from /<<PKGBUILDDIR>>/c++/src/app/blastdb/../blast/blast_app_util.hpp:40,
from /<<PKGBUILDDIR>>/c++/src/app/blastdb/blastdb_path.cpp:39:
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
65 | auto_ptr<CNcbiOstream> m_FileStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
156 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
157 | auto_ptr<CCompressOStream> m_CompressOStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
875 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/app/blastdb/../blast/blast_app_util.hpp:45:
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
743 | auto_ptr<CObjectIStream> m_ObjectStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blastfmtutil.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/app/blastdb/../blast/blast_app_util.hpp:50:
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
108 | auto_ptr<CMemoryFile> m_memGi2GeneFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
111 | auto_ptr<CMemoryFile> m_memGene2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
114 | auto_ptr<CMemoryFile> m_memGi2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
117 | auto_ptr<CMemoryFile> m_memGene2GiFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1554 | static auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blastfmtutil.hpp:41:
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
654 | auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/app/blastdb/blastdb_path.cpp: In member function ‘virtual void CBlastDBCmdApp::Init()’:
/<<PKGBUILDDIR>>/c++/src/app/blastdb/blastdb_path.cpp:73:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
73 | auto_ptr<CArgDescriptions> arg_desc(new CArgDescriptions);
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/sseqloc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/app/blastdb/blastdbcheck.cpp:44:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiargs.hpp:84,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp_api.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:42:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input.hpp:40:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/app/blastdb/blastdbcheck.cpp:46:
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
108 | auto_ptr<CMemoryFile> m_memGi2GeneFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
111 | auto_ptr<CMemoryFile> m_memGene2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
114 | auto_ptr<CMemoryFile> m_memGi2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
117 | auto_ptr<CMemoryFile> m_memGene2GiFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1554 | static auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:46,
from /<<PKGBUILDDIR>>/c++/src/app/blastdb/../blast/blast_app_util.hpp:40,
from /<<PKGBUILDDIR>>/c++/src/app/blastdb/blastdbcheck.cpp:47:
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
65 | auto_ptr<CNcbiOstream> m_FileStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
156 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
157 | auto_ptr<CCompressOStream> m_CompressOStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
875 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/app/blastdb/../blast/blast_app_util.hpp:45:
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
743 | auto_ptr<CObjectIStream> m_ObjectStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blastfmtutil.hpp:41,
from /<<PKGBUILDDIR>>/c++/src/app/blastdb/../blast/blast_app_util.hpp:50:
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
654 | auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/app/blastdb/blastdbcheck.cpp: In member function ‘virtual void CBlastDbCheckApplication::Init()’:
/<<PKGBUILDDIR>>/c++/src/app/blastdb/blastdbcheck.cpp:147:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
147 | auto_ptr<CArgDescriptions> arg_desc(new CArgDescriptions);
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=blastdb_path /<<PKGBUILDDIR>>/c++/src/app/blastdb/blastdb_path.cpp -o blastdb_path.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blastdb_path.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o blastdb_path
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_path /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f blastdb_path /<<PKGBUILDDIR>>/c++/BUILD/bin/blastdb_path
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
cd app/blastdb/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=blastdbcmd LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/app/blastdb TMPL=blastdbcmd -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/app/blastdb/blastdbcmd.cpp:36:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/sseqloc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input_aux.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/app/blastdb/blastdbcmd.cpp:41:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiargs.hpp:84,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp_api.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:42:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
65 | auto_ptr<CNcbiOstream> m_FileStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:54,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/blastdb_format/seq_formatter.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/app/blastdb/blastdbcmd.cpp:42:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/app/blastdb/../blast/blast_app_util.hpp:40,
from /<<PKGBUILDDIR>>/c++/src/app/blastdb/blastdbcmd.cpp:47:
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
156 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
157 | auto_ptr<CCompressOStream> m_CompressOStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
875 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/app/blastdb/../blast/blast_app_util.hpp:45:
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
743 | auto_ptr<CObjectIStream> m_ObjectStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blastfmtutil.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/app/blastdb/../blast/blast_app_util.hpp:50:
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
108 | auto_ptr<CMemoryFile> m_memGi2GeneFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
111 | auto_ptr<CMemoryFile> m_memGene2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
114 | auto_ptr<CMemoryFile> m_memGi2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
117 | auto_ptr<CMemoryFile> m_memGene2GiFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1554 | static auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blastfmtutil.hpp:41:
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
654 | auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/app/blastdb/blastdbcmd.cpp: In member function ‘virtual void CBlastDBCmdApp::Init()’:
/<<PKGBUILDDIR>>/c++/src/app/blastdb/blastdbcmd.cpp:863:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
863 | auto_ptr<CArgDescriptions> arg_desc(new CArgDescriptions);
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=blastdbcheck /<<PKGBUILDDIR>>/c++/src/app/blastdb/blastdbcheck.cpp -o blastdbcheck.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blastdbcheck.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o blastdbcheck
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcheck /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f blastdbcheck /<<PKGBUILDDIR>>/c++/BUILD/bin/blastdbcheck
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
cd app/blastdb/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=blastdbcp LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/app/blastdb TMPL=blastdbcp -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/app/blastdb/blastdbcp.cpp:31:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/sseqloc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/app/blastdb/blastdbcp.cpp:32:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiargs.hpp:84,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp_api.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:42:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input.hpp:40:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/app/blastdb/blastdbcp.cpp: In member function ‘virtual void BlastdbCopyApplication::Init()’:
/<<PKGBUILDDIR>>/c++/src/app/blastdb/blastdbcp.cpp:107:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
107 | auto_ptr<CArgDescriptions> arg_desc(new CArgDescriptions);
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=blastdbcmd /<<PKGBUILDDIR>>/c++/src/app/blastdb/blastdbcmd.cpp -o blastdbcmd.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blastdbcmd.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o blastdbcmd
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcmd /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f blastdbcmd /<<PKGBUILDDIR>>/c++/BUILD/bin/blastdbcmd
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
cd app/blastdb/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=makeblastdb LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/app/blastdb TMPL=makeblastdb -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/app/blastdb/makeblastdb.cpp:38:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=blastdbcp /<<PKGBUILDDIR>>/c++/src/app/blastdb/blastdbcp.cpp -o blastdbcp.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blastdbcp.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lwritedb -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lxser -lxcgi -lxhtml -lxconnect -lxutil -lxncbi -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o blastdbcp
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcp /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f blastdbcp /<<PKGBUILDDIR>>/c++/BUILD/bin/blastdbcp
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
cd app/blastdb/ && /usr/bin/make -w -j4 --jobserver-auth=5,6 APP_PROJ=makeprofiledb LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.app.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/app/blastdb TMPL=makeprofiledb -w -j4 --jobserver-auth=7,8 all
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:43,
from /<<PKGBUILDDIR>>/c++/src/app/blastdb/makeprofiledb.cpp:36:
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:142:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:158:58: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:170:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:177:45: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:195:61: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT())
| ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:124:55: note: in expansion of macro ‘NCBI_BUILD_TIME’
124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY)
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:104:5: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_INSTANCE’
104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/version.hpp:117:35: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT_IMPL’
117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL()
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro ‘NCBI_SBUILDINFO_DEFAULT’
94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT());
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/sseqloc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input_aux.hpp:37,
from /<<PKGBUILDDIR>>/c++/src/app/blastdb/makeblastdb.cpp:37:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/version_api.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/version.hpp:38,
from /<<PKGBUILDDIR>>/c++/src/app/blastdb/makeblastdb.cpp:36:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_writer/build_db.hpp:44,
from /<<PKGBUILDDIR>>/c++/src/app/blastdb/masked_range_set.hpp:33,
from /<<PKGBUILDDIR>>/c++/src/app/blastdb/masked_range_set.cpp:31:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_writer/build_db.hpp:37:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_writer/build_db.hpp:45:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
65 | auto_ptr<CNcbiOstream> m_FileStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/util/indexer.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/util/create_defline.hpp:42,
from /<<PKGBUILDDIR>>/c++/src/app/blastdb/makeblastdb.cpp:41:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/app/blastdb/makeblastdb.cpp:42:
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
364 | auto_ptr<CFeat_CI> &feat_ci,
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/util/sequence.hpp:869:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
869 | auto_ptr<sequence::CDeflineGenerator> m_Gen;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/app/blastdb/../blast/blast_app_util.hpp:40,
from /<<PKGBUILDDIR>>/c++/src/app/blastdb/makeblastdb.cpp:59:
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
156 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
157 | auto_ptr<CCompressOStream> m_CompressOStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
875 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/app/blastdb/../blast/blast_app_util.hpp:45:
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
743 | auto_ptr<CObjectIStream> m_ObjectStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blastfmtutil.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/app/blastdb/../blast/blast_app_util.hpp:50:
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
108 | auto_ptr<CMemoryFile> m_memGi2GeneFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
111 | auto_ptr<CMemoryFile> m_memGene2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
114 | auto_ptr<CMemoryFile> m_memGi2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
117 | auto_ptr<CMemoryFile> m_memGene2GiFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1554 | static auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blastfmtutil.hpp:41:
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
654 | auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/app/blastdb/makeblastdb.cpp: In member function ‘virtual void CMakeBlastDBApp::Init()’:
/<<PKGBUILDDIR>>/c++/src/app/blastdb/makeblastdb.cpp:210:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
210 | auto_ptr<CArgDescriptions> arg_desc(new CArgDescriptions);
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objmgr/seq_feat_handle.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/objmgr/scope.hpp:51,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/api/sseqloc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/app/blastdb/makeprofiledb.cpp:43:
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
515 | auto_ptr<CAnnotMappingCollector> m_MappingCollector;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:221,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbicntr.hpp:40,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiobj.hpp:39,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiargs.hpp:84,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp_api.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiapp.hpp:42:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
523 | auto_ptr<TAnnotLocsSet> m_AnnotLocsSet;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
528 | mutable auto_ptr<TAnnotNames> m_AnnotNames;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input.hpp:40:
/<<PKGBUILDDIR>>/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
277 | auto_ptr<TPluginManager> m_PluginManager;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:46,
from /<<PKGBUILDDIR>>/c++/src/app/blastdb/../blast/blast_app_util.hpp:40,
from /<<PKGBUILDDIR>>/c++/src/app/blastdb/makeprofiledb.cpp:63:
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
65 | auto_ptr<CNcbiOstream> m_FileStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
156 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
157 | auto_ptr<CCompressOStream> m_CompressOStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
875 | auto_ptr<CDecompressIStream> m_DecompressIStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/src/app/blastdb/../blast/blast_app_util.hpp:45:
/<<PKGBUILDDIR>>/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
743 | auto_ptr<CObjectIStream> m_ObjectStream;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:43,
from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blastfmtutil.hpp:39,
from /<<PKGBUILDDIR>>/c++/src/app/blastdb/../blast/blast_app_util.hpp:50:
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
108 | auto_ptr<CMemoryFile> m_memGi2GeneFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
111 | auto_ptr<CMemoryFile> m_memGene2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
114 | auto_ptr<CMemoryFile> m_memGi2OffsetFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
117 | auto_ptr<CMemoryFile> m_memGene2GiFile;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1554 | static auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/c++/include/algo/blast/format/blastfmtutil.hpp:41:
/<<PKGBUILDDIR>>/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
654 | auto_ptr<CGeneInfoFileReader> m_GeneInfoReader;
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/app/blastdb/makeprofiledb.cpp: In member function ‘void CMakeProfileDBApp::x_SetupArgDescriptions()’:
/<<PKGBUILDDIR>>/c++/src/app/blastdb/makeprofiledb.cpp:383:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
383 | auto_ptr<CArgDescriptions> arg_desc(new CArgDescriptions);
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/app/blastdb/makeprofiledb.cpp: In member function ‘void CMakeProfileDBApp::x_InitRPSDbInfo(CRPS_DbInfo&, Int4, Int4)’:
/<<PKGBUILDDIR>>/c++/src/app/blastdb/makeprofiledb.cpp:758:6: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
758 | if (!rpsDbInfo.aux_file.is_open())
| ^~
/<<PKGBUILDDIR>>/c++/src/app/blastdb/makeprofiledb.cpp:761:10: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
761 | string freq_str = rpsDbInfo.db_name + ".freq";
| ^~~~~~
/<<PKGBUILDDIR>>/c++/src/app/blastdb/makeprofiledb.cpp: In member function ‘void CMakeProfileDBApp::x_RPSUpdateStatistics(CRPS_DbInfo&, ncbi::objects::CPssmWithParameters&, Int4)’:
/<<PKGBUILDDIR>>/c++/src/app/blastdb/makeprofiledb.cpp:883:5: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
883 | auto_ptr<CNcbiMatrix <double> > freq_list (CScorematPssmConverter::GetFreqRatios(seq));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/app/blastdb/makeprofiledb.cpp: In member function ‘void CMakeProfileDBApp::x_UpdateFreqRatios(CRPS_DbInfo&, const ncbi::objects::CPssmWithParameters&, Int4, Int4)’:
/<<PKGBUILDDIR>>/c++/src/app/blastdb/makeprofiledb.cpp:1063:9: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1063 | auto_ptr<CNcbiMatrix<double> > matrix (CScorematPssmConverter::GetFreqRatios(pssm_p));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
/<<PKGBUILDDIR>>/c++/src/app/blastdb/makeprofiledb.cpp: In member function ‘int CMakeProfileDBApp::x_Run()’:
/<<PKGBUILDDIR>>/c++/src/app/blastdb/makeprofiledb.cpp:1382:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
1382 | if (m_NumOfVols == m_VolNames.size()) {
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/list:64,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_stack.hpp:36,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidiag.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbidbg.hpp:47,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbimisc.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbiexpt.hpp:42,
from /<<PKGBUILDDIR>>/c++/include/corelib/tempstr.hpp:38,
from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:39:
/usr/include/c++/12/bits/list.tcc: In member function ‘std::__cxx11::list<_Tp, _Alloc>::iterator std::__cxx11::list<_Tp, _Alloc>::insert(const_iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/12/bits/list.tcc:117:5: note: parameter passing for argument of type ‘std::__cxx11::list<double>::const_iterator’ changed in GCC 7.1
117 | list<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/app/blastdb/makeprofiledb.cpp: In member function ‘bool CMakeProfileDBApp::x_CheckDelta(const ncbi::objects::CPssm&, Int4, const std::string&)’:
/<<PKGBUILDDIR>>/c++/src/app/blastdb/makeprofiledb.cpp:1803:44: note: parameter passing for argument of type ‘std::__cxx11::list<double>::const_iterator’ changed in GCC 7.1
1803 | modify_freqs.insert(p_itr, (BLASTAA_SIZE-alphabet_size), 0);
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/c++/src/app/blastdb/makeprofiledb.cpp: In member function ‘void CMakeProfileDBApp::x_UpdateDelta(CRPS_DbInfo&, std::vector<std::__cxx11::basic_string<char> >&)’:
/<<PKGBUILDDIR>>/c++/src/app/blastdb/makeprofiledb.cpp:1650:52: note: parameter passing for argument of type ‘std::__cxx11::list<double>::const_iterator’ changed in GCC 7.1
1650 | modify_freqs.insert(p_itr, (BLASTAA_SIZE-alphabet_size), 0);
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=makeblastdb /<<PKGBUILDDIR>>/c++/src/app/blastdb/makeblastdb.cpp -o makeblastdb.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=makeblastdb /<<PKGBUILDDIR>>/c++/src/app/blastdb/masked_range_set.cpp -o masked_range_set.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie makeblastdb.o masked_range_set.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lwritedb -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o makeblastdb
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f makeblastdb /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f makeblastdb /<<PKGBUILDDIR>>/c++/BUILD/bin/makeblastdb
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=makeprofiledb /<<PKGBUILDDIR>>/c++/src/app/blastdb/makeprofiledb.cpp -o makeprofiledb.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie makeprofiledb.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lwritedb -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o makeprofiledb
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f makeprofiledb /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f makeprofiledb /<<PKGBUILDDIR>>/c++/BUILD/bin/makeprofiledb
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=rpsblast /<<PKGBUILDDIR>>/c++/src/app/blast/rpsblast_node.cpp -o rpsblast_node.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=rpsblast /<<PKGBUILDDIR>>/c++/src/app/blast/rpsblast_app.cpp -o rpsblast_app.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie rpsblast_node.o rpsblast_app.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o rpsblast
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f rpsblast /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f rpsblast /<<PKGBUILDDIR>>/c++/BUILD/bin/rpsblast
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
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make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/blastinput/unit_test'
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blastinput_unit_test /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp -o blastinput_unit_test.o
/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blastinput_unit_test /<<PKGBUILDDIR>>/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp -o blast_scope_src_unit_test.o
/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blastinput_unit_test.o blast_scope_src_unit_test.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -ltest_boost -lentrez2cli -lentrez2 -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o blastinput_unit_test
/bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastinput_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin
/bin/ln -f blastinput_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin/blastinput_unit_test
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/blastinput/unit_test'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/blastinput/unit_test'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_test
cd c\+\+ && /usr/bin/make -j4 check "TESTSUITEFLAGS=-j4 --verbose" VERBOSE=1
make[2]: Entering directory '/<<PKGBUILDDIR>>/c++'
if test -s ""; then \
cd /<<PKGBUILDDIR>>/c++/BUILD/build && /usr/bin/make -w -j4 --jobserver-auth=3,4 check_p RUN_CHECK=Y; \
else \
cd /<<PKGBUILDDIR>>/c++/BUILD/build && /usr/bin/make -w -j4 --jobserver-auth=3,4 check_r RUN_CHECK=Y; \
fi
make[3]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build'
make[3]: warning: -j4 forced in submake: resetting jobserver mode.
======================================================================
make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build'
make[4]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make -C corelib -w -j4 --jobserver-auth=7,8 check_add_r || exit 5
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
/bin/echo 'Warning: non-existent sub-project "test"'
Warning: non-existent sub-project "test"
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/corelib'
/usr/bin/make -C util -w -j4 --jobserver-auth=7,8 check_add_r || exit 5
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make -C regexp -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
NOTE: Skipping project regexp due to unmet requirements:
LocalPCRE
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/regexp'
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
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/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/util/regexp TMPL=regexp -w -j4 --jobserver-auth=13,14 mark-as-disabled
make[8]: warning: -j4 forced in submake: resetting jobserver mode.
make[8]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/regexp'
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make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/regexp'
/usr/bin/make -C xregexp -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
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make[6]: Nothing to be done for 'check_add_r'.
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/usr/bin/make -C compress -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
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/usr/bin/make -C bzip2 -w -j4 --jobserver-auth=11,12 check_add_r || exit 5
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/compress'
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
NOTE: Skipping project bzip2 due to unmet requirements:
LocalBZ2
make[8]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/compress/bzip2'
make[8]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/compress/bzip2'
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make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/compress/bzip2'
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make[9]: warning: -j4 forced in submake: resetting jobserver mode.
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/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/util/compress/bzip2 TMPL=bzip2 -w -j4 --jobserver-auth=15,16 mark-as-disabled
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/compress/bzip2'
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/compress/bzip2'
make[8]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/compress/bzip2'
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/compress/bzip2'
/usr/bin/make -C zlib -w -j4 --jobserver-auth=11,12 check_add_r || exit 5
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/compress'
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
NOTE: Skipping project zlib due to unmet requirements:
LocalZ
make[8]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/compress/zlib'
make[8]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/compress/zlib'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/compress/zlib'
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/compress/zlib'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/compress/zlib'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/util/compress/zlib TMPL=zlib -w -j4 --jobserver-auth=15,16 mark-as-disabled
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/compress/zlib'
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/compress/zlib'
make[8]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/compress/zlib'
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/compress/zlib'
/usr/bin/make -C api -w -j4 --jobserver-auth=11,12 check_add_r || exit 5
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/compress'
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
make[7]: Nothing to be done for 'check_add_r'.
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/compress/api'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/compress'
/bin/echo 'Warning: non-existent sub-project "diff"'
Warning: non-existent sub-project "diff"
/bin/echo 'Warning: non-existent sub-project "image"'
Warning: non-existent sub-project "image"
/usr/bin/make -C tables -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
/bin/echo 'Warning: non-existent sub-project "test"'
Warning: non-existent sub-project "test"
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/tables'
/usr/bin/make -C sequtil -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Nothing to be done for 'check_add_r'.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/sequtil'
/usr/bin/make -C bitset -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
/bin/echo 'Warning: non-existent sub-project "test"'
Warning: non-existent sub-project "test"
/bin/echo 'Warning: non-existent sub-project "demo"'
Warning: non-existent sub-project "demo"
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/bitset'
/bin/echo 'Warning: non-existent sub-project "qparse"'
Warning: non-existent sub-project "qparse"
/usr/bin/make -C lmdb -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
NOTE: Skipping project lmdb due to unmet requirements:
LocalLMDB
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/lmdb'
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
make[8]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/lmdb'
make[8]: warning: -j4 forced in submake: resetting jobserver mode.
make[8]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/lmdb'
make[8]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/lmdb'
make[8]: warning: -j4 forced in submake: resetting jobserver mode.
make[8]: *** No rule to make target '/<<PKGBUILDDIR>>/c++/BUILD/status/LocalLMDB.enabled', needed by 'requirements'. Stop.
make[8]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/lmdb'
NOTE: skipping project "lmdb" due to unmet requirements
make[8]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/lmdb'
make[8]: warning: -j4 forced in submake: resetting jobserver mode.
make[8]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/lmdb'
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/lmdb'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/lmdb'
/usr/bin/make -C lmdbxx -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/lmdbxx'
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/lmdbxx'
SKIP -- util/lmdbxx/lmdbxx_sample
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/lmdbxx'
/bin/echo 'Warning: non-existent sub-project "test"'
Warning: non-existent sub-project "test"
/bin/echo 'Warning: non-existent sub-project "demo"'
Warning: non-existent sub-project "demo"
/usr/bin/make -C profile -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Nothing to be done for 'check_add_r'.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util/profile'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/util'
/usr/bin/make -C connect -w -j4 --jobserver-auth=7,8 check_add_r || exit 5
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make -C services -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
/bin/echo 'Warning: non-existent sub-project "test"'
Warning: non-existent sub-project "test"
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect/services'
/bin/echo 'Warning: non-existent sub-project "ext"'
Warning: non-existent sub-project "ext"
/bin/echo 'Warning: non-existent sub-project "test"'
Warning: non-existent sub-project "test"
/bin/echo 'Warning: non-existent sub-project "daemons"'
Warning: non-existent sub-project "daemons"
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/connect'
/usr/bin/make -C cgi -w -j4 --jobserver-auth=7,8 check_add_r || exit 5
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
/bin/echo 'Warning: non-existent sub-project "test"'
Warning: non-existent sub-project "test"
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/cgi'
/usr/bin/make -C html -w -j4 --jobserver-auth=7,8 check_add_r || exit 5
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
/bin/echo 'Warning: non-existent sub-project "test"'
Warning: non-existent sub-project "test"
/bin/echo 'Warning: non-existent sub-project "demo"'
Warning: non-existent sub-project "demo"
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/html'
/usr/bin/make -C build-system -w -j4 --jobserver-auth=7,8 check_add_r || exit 5
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make -C helpers -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/build-system'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/build-system/helpers'
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/build-system/helpers'
SKIP -- build-system/helpers/run_with_lock
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/build-system/helpers'
/usr/bin/make -C project_tree_builder -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/build-system'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/build-system/project_tree_builder'
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/build-system/project_tree_builder'
SKIP -- build-system/project_tree_builder/project_tree_builder
/usr/bin/make -C msbuild -w -j4 --jobserver-auth=11,12 check_add_r || exit 5
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/build-system/project_tree_builder'
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
NOTE: Skipping project msbuild due to unmet requirements:
MSWin
make[8]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/build-system/project_tree_builder/msbuild'
make[8]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/build-system/project_tree_builder/msbuild'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/build-system/project_tree_builder/msbuild'
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/build-system/project_tree_builder/msbuild'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/build-system/project_tree_builder/msbuild'
/usr/bin/make -f /<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.lib.tmpl srcdir=/<<PKGBUILDDIR>>/c++/src/build-system/project_tree_builder/msbuild TMPL=msbuild_dataobj -w -j4 --jobserver-auth=15,16 mark-as-disabled
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/build-system/project_tree_builder/msbuild'
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/build-system/project_tree_builder/msbuild'
make[8]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/build-system/project_tree_builder/msbuild'
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/build-system/project_tree_builder/msbuild'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/build-system/project_tree_builder'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/build-system'
/usr/bin/make -C serial -w -j4 --jobserver-auth=7,8 check_add_r || exit 5
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make -C datatool -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/serial'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/serial/datatool'
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/serial/datatool'
TEST -- serial/datatool/datatool
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/serial/datatool'
/bin/echo 'Warning: non-existent sub-project "test"'
Warning: non-existent sub-project "test"
/bin/echo 'Warning: non-existent sub-project "soap"'
Warning: non-existent sub-project "soap"
/usr/bin/make -C grpc_integration -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/serial'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Nothing to be done for 'check_add_r'.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/serial/grpc_integration'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/serial'
/usr/bin/make -C db -w -j4 --jobserver-auth=7,8 check_add_r || exit 5
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make -C sqlite -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/db'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Nothing to be done for 'check_add_r'.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/db/sqlite'
/bin/echo 'Warning: non-existent sub-project "bdb"'
Warning: non-existent sub-project "bdb"
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/db'
/bin/echo 'Warning: non-existent sub-project "dbapi"'
Warning: non-existent sub-project "dbapi"
/usr/bin/make -C objects -w -j4 --jobserver-auth=7,8 check_add_r || exit 5
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make -C general -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
/bin/echo 'Warning: non-existent sub-project "test"'
Warning: non-existent sub-project "test"
/bin/echo 'Warning: non-existent sub-project "unit_test"'
Warning: non-existent sub-project "unit_test"
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/general'
/usr/bin/make -C biblio -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Nothing to be done for 'check_add_r'.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/biblio'
/usr/bin/make -C medline -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Nothing to be done for 'check_add_r'.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/medline'
/usr/bin/make -C pub -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Nothing to be done for 'check_add_r'.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/pub'
/usr/bin/make -C seqcode -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Nothing to be done for 'check_add_r'.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seqcode'
/usr/bin/make -C seq -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
/bin/echo 'Warning: non-existent sub-project "test"'
Warning: non-existent sub-project "test"
/bin/echo 'Warning: non-existent sub-project "unit_test"'
Warning: non-existent sub-project "unit_test"
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seq'
/usr/bin/make -C seqset -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
/bin/echo 'Warning: non-existent sub-project "test"'
Warning: non-existent sub-project "test"
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seqset'
/usr/bin/make -C submit -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Nothing to be done for 'check_add_r'.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/submit'
/usr/bin/make -C seqedit -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Nothing to be done for 'check_add_r'.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seqedit'
/usr/bin/make -C seqsplit -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Nothing to be done for 'check_add_r'.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seqsplit'
/usr/bin/make -C id1 -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
/bin/echo 'Warning: non-existent sub-project "test"'
Warning: non-existent sub-project "test"
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/id1'
/usr/bin/make -C id2 -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Nothing to be done for 'check_add_r'.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/id2'
/usr/bin/make -C entrez2 -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
/bin/echo 'Warning: non-existent sub-project "demo"'
Warning: non-existent sub-project "demo"
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/entrez2'
/usr/bin/make -C pubmed -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Nothing to be done for 'check_add_r'.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/pubmed'
/usr/bin/make -C medlars -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Nothing to be done for 'check_add_r'.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/medlars'
/usr/bin/make -C mla -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Nothing to be done for 'check_add_r'.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/mla'
/usr/bin/make -C proj -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Nothing to be done for 'check_add_r'.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/proj'
/usr/bin/make -C scoremat -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Nothing to be done for 'check_add_r'.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/scoremat'
/usr/bin/make -C blast -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Nothing to be done for 'check_add_r'.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blast'
/usr/bin/make -C blastdb -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Nothing to be done for 'check_add_r'.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blastdb'
/usr/bin/make -C blastxml -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Nothing to be done for 'check_add_r'.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blastxml'
/usr/bin/make -C blastxml2 -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Nothing to be done for 'check_add_r'.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/blastxml2'
/usr/bin/make -C mmdb -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Nothing to be done for 'check_add_r'.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/mmdb'
/usr/bin/make -C cn3d -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Nothing to be done for 'check_add_r'.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/cn3d'
/usr/bin/make -C cdd -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Nothing to be done for 'check_add_r'.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/cdd'
/usr/bin/make -C ncbimime -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
/bin/echo 'Warning: non-existent sub-project "test"'
Warning: non-existent sub-project "test"
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/ncbimime'
/usr/bin/make -C pcsubstance -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Nothing to be done for 'check_add_r'.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/pcsubstance'
/usr/bin/make -C pcassay -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Nothing to be done for 'check_add_r'.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/pcassay'
/usr/bin/make -C gbseq -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Nothing to be done for 'check_add_r'.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/gbseq'
/usr/bin/make -C insdseq -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Nothing to be done for 'check_add_r'.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/insdseq'
/usr/bin/make -C tinyseq -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Nothing to be done for 'check_add_r'.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/tinyseq'
/usr/bin/make -C biotree -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Nothing to be done for 'check_add_r'.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/biotree'
/usr/bin/make -C entrezgene -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
/bin/echo 'Warning: non-existent sub-project "unit_test"'
Warning: non-existent sub-project "unit_test"
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/entrezgene'
/usr/bin/make -C omssa -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Nothing to be done for 'check_add_r'.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/omssa'
/usr/bin/make -C remap -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Nothing to be done for 'check_add_r'.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/remap'
/usr/bin/make -C seqtest -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Nothing to be done for 'check_add_r'.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/seqtest'
/usr/bin/make -C taxon1 -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Nothing to be done for 'check_add_r'.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/taxon1'
/usr/bin/make -C taxon3 -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Nothing to be done for 'check_add_r'.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/taxon3'
/usr/bin/make -C gbproj -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Nothing to be done for 'check_add_r'.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/gbproj'
/usr/bin/make -C trackmgr -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Nothing to be done for 'check_add_r'.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/trackmgr'
/usr/bin/make -C valerr -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Nothing to be done for 'check_add_r'.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/valerr'
/usr/bin/make -C valid -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Nothing to be done for 'check_add_r'.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/valid'
/usr/bin/make -C access -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Nothing to be done for 'check_add_r'.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/access'
/usr/bin/make -C docsum -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Nothing to be done for 'check_add_r'.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/docsum'
/usr/bin/make -C featdef -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Nothing to be done for 'check_add_r'.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/featdef'
/usr/bin/make -C genomecoll -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make -C gc_cli -w -j4 --jobserver-auth=11,12 check_add_r || exit 5
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/genomecoll'
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
make[8]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/genomecoll/gc_cli'
make[8]: warning: -j4 forced in submake: resetting jobserver mode.
make[8]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/genomecoll/gc_cli'
SKIP -- objects/genomecoll/gc_cli/gc_cli (unmet build REQUIRES)
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/genomecoll/gc_cli'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/genomecoll'
/usr/bin/make -C homologene -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Nothing to be done for 'check_add_r'.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/homologene'
/usr/bin/make -C mim -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Nothing to be done for 'check_add_r'.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/mim'
/usr/bin/make -C objprt -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Nothing to be done for 'check_add_r'.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/objprt'
/usr/bin/make -C variation -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Nothing to be done for 'check_add_r'.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/variation'
/usr/bin/make -C macro -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
/bin/echo 'Warning: non-existent sub-project "unit_test"'
Warning: non-existent sub-project "unit_test"
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/macro'
/usr/bin/make -C genesbyloc -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Nothing to be done for 'check_add_r'.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/genesbyloc'
/usr/bin/make -C coords -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Nothing to be done for 'check_add_r'.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/coords'
/usr/bin/make -C varrep -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Nothing to be done for 'check_add_r'.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/varrep'
/usr/bin/make -C variation_libs -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make -C dbsnp -w -j4 --jobserver-auth=11,12 check_add_r || exit 5
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/variation_libs'
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make -C search_by_rsid -w -j4 --jobserver-auth=13,14 check_add_r || exit 5
make[8]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/variation_libs/dbsnp'
make[8]: warning: -j4 forced in submake: resetting jobserver mode.
make[8]: Nothing to be done for 'check_add_r'.
make[8]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/variation_libs/dbsnp/search_by_rsid'
/usr/bin/make -C tooltip_service -w -j4 --jobserver-auth=13,14 check_add_r || exit 5
make[8]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/variation_libs/dbsnp'
make[8]: warning: -j4 forced in submake: resetting jobserver mode.
make[8]: Nothing to be done for 'check_add_r'.
make[8]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/variation_libs/dbsnp/tooltip_service'
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/variation_libs/dbsnp'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/variation_libs'
/usr/bin/make -C dbsnp -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make -C primary_track -w -j4 --jobserver-auth=11,12 check_add_r || exit 5
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/dbsnp'
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
/bin/echo 'Warning: non-existent sub-project "test"'
Warning: non-existent sub-project "test"
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/dbsnp/primary_track'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects/dbsnp'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objects'
/usr/bin/make -C objmgr -w -j4 --jobserver-auth=7,8 check_add_r || exit 5
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
/bin/echo 'Warning: non-existent sub-project "test"'
Warning: non-existent sub-project "test"
/usr/bin/make -C util -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objmgr'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
/bin/echo 'Warning: non-existent sub-project "unit_test"'
Warning: non-existent sub-project "unit_test"
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objmgr/util'
/usr/bin/make -C split -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objmgr'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Nothing to be done for 'check_add_r'.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objmgr/split'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objmgr'
/usr/bin/make -C objtools -w -j4 --jobserver-auth=7,8 check_add_r || exit 5
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make -C logging -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Nothing to be done for 'check_add_r'.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/logging'
/bin/echo 'Warning: non-existent sub-project "unit_test_util"'
Warning: non-existent sub-project "unit_test_util"
/usr/bin/make -C readers -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
/bin/echo 'Warning: non-existent sub-project "app"'
Warning: non-existent sub-project "app"
/bin/echo 'Warning: non-existent sub-project "test"'
Warning: non-existent sub-project "test"
/bin/echo 'Warning: non-existent sub-project "unit_test"'
Warning: non-existent sub-project "unit_test"
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/readers'
/usr/bin/make -C blast -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make -C seqdb_reader -w -j4 --jobserver-auth=11,12 check_add_r || exit 5
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast'
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make -C demo -w -j4 --jobserver-auth=13,14 check_add_r || exit 5
make[8]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_reader'
make[8]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_reader/demo'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_reader/demo'
SKIP -- objtools/blast/seqdb_reader/demo/seqdb_demo
make[8]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_reader/demo'
/usr/bin/make -C test -w -j4 --jobserver-auth=13,14 check_add_r || exit 5
make[8]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_reader'
make[8]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_reader/test'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_reader/test'
TEST -- objtools/blast/seqdb_reader/test/seqdb_perf
make[8]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_reader/test'
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_reader'
/usr/bin/make -C seqdb_writer -w -j4 --jobserver-auth=11,12 check_add_r || exit 5
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast'
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make -C unit_test -w -j4 --jobserver-auth=13,14 check_add_r || exit 5
make[8]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_writer'
make[8]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test'
TEST -- objtools/blast/seqdb_writer/unit_test/writedb_unit_test
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test'
TEST -- objtools/blast/seqdb_writer/unit_test/writedb_lmdb_unit_test
make[8]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test'
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_writer'
/usr/bin/make -C gene_info_reader -w -j4 --jobserver-auth=11,12 check_add_r || exit 5
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast'
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make -C demo -w -j4 --jobserver-auth=13,14 check_add_r || exit 5
make[8]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/gene_info_reader'
make[8]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/gene_info_reader/demo'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/gene_info_reader/demo'
SKIP -- objtools/blast/gene_info_reader/demo/gene_info_reader
make[8]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/gene_info_reader/demo'
/usr/bin/make -C unit_test -w -j4 --jobserver-auth=13,14 check_add_r || exit 5
make[8]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/gene_info_reader'
make[8]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test'
TEST -- objtools/blast/gene_info_reader/unit_test/gene_info_unit_test
make[8]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test'
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/gene_info_reader'
/bin/echo 'Warning: non-existent sub-project "gene_info_writer"'
Warning: non-existent sub-project "gene_info_writer"
/usr/bin/make -C services -w -j4 --jobserver-auth=11,12 check_add_r || exit 5
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast'
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make -C unit_test -w -j4 --jobserver-auth=13,14 check_add_r || exit 5
make[8]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/services'
make[8]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/services/unit_test'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/services/unit_test'
SKIP -- objtools/blast/services/unit_test/blast_services_unit_test
make[8]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/services/unit_test'
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/services'
/usr/bin/make -C blastdb_format -w -j4 --jobserver-auth=11,12 check_add_r || exit 5
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast'
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make -C unit_test -w -j4 --jobserver-auth=13,14 check_add_r || exit 5
make[8]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/blastdb_format'
make[8]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/blastdb_format/unit_test'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/blastdb_format/unit_test'
TEST -- objtools/blast/blastdb_format/unit_test/blastdb_format_unit_test
make[8]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/blastdb_format/unit_test'
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/blastdb_format'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast'
/bin/echo 'Warning: non-existent sub-project "lds2"'
Warning: non-existent sub-project "lds2"
/usr/bin/make -C pubseq_gateway -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
/bin/echo 'Warning: non-existent sub-project "diag"'
Warning: non-existent sub-project "diag"
/bin/echo 'Warning: non-existent sub-project "cassandra"'
Warning: non-existent sub-project "cassandra"
/usr/bin/make -C client -w -j4 --jobserver-auth=11,12 check_add_r || exit 5
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/pubseq_gateway'
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make -C test -w -j4 --jobserver-auth=13,14 check_add_r || exit 5
make[8]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/pubseq_gateway/client'
make[8]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/pubseq_gateway/client/test'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/pubseq_gateway/client/test'
SKIP -- objtools/pubseq_gateway/client/test/test_psg_client_impl (unmet build REQUIRES)
make[8]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/pubseq_gateway/client/test'
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/pubseq_gateway/client'
/bin/echo 'Warning: non-existent sub-project "protobuf"'
Warning: non-existent sub-project "protobuf"
/bin/echo 'Warning: non-existent sub-project "cache"'
Warning: non-existent sub-project "cache"
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/pubseq_gateway'
/usr/bin/make -C data_loaders -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make -C genbank -w -j4 --jobserver-auth=11,12 check_add_r || exit 5
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders'
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make -C cache -w -j4 --jobserver-auth=13,14 check_add_r || exit 5
make[8]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank'
make[8]: warning: -j4 forced in submake: resetting jobserver mode.
make[8]: Nothing to be done for 'check_add_r'.
make[8]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank/cache'
/bin/echo 'Warning: non-existent sub-project "pubseq"'
Warning: non-existent sub-project "pubseq"
/usr/bin/make -C id2 -w -j4 --jobserver-auth=13,14 check_add_r || exit 5
make[8]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank'
make[8]: warning: -j4 forced in submake: resetting jobserver mode.
make[8]: Nothing to be done for 'check_add_r'.
make[8]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank/id2'
/usr/bin/make -C id1 -w -j4 --jobserver-auth=13,14 check_add_r || exit 5
make[8]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank'
make[8]: warning: -j4 forced in submake: resetting jobserver mode.
make[8]: Nothing to be done for 'check_add_r'.
make[8]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank/id1'
/bin/echo 'Warning: non-existent sub-project "pubseq2"'
Warning: non-existent sub-project "pubseq2"
/usr/bin/make -C gicache -w -j4 --jobserver-auth=13,14 check_add_r || exit 5
make[8]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank'
make[8]: warning: -j4 forced in submake: resetting jobserver mode.
make[8]: Nothing to be done for 'check_add_r'.
make[8]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank/gicache'
/bin/echo 'Warning: non-existent sub-project "test"'
Warning: non-existent sub-project "test"
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/genbank'
/bin/echo 'Warning: non-existent sub-project "lds2"'
Warning: non-existent sub-project "lds2"
/usr/bin/make -C blastdb -w -j4 --jobserver-auth=11,12 check_add_r || exit 5
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders'
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
/bin/echo 'Warning: non-existent sub-project "unit_test"'
Warning: non-existent sub-project "unit_test"
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders/blastdb'
/bin/echo 'Warning: non-existent sub-project "patcher"'
Warning: non-existent sub-project "patcher"
/bin/echo 'Warning: non-existent sub-project "asn_cache"'
Warning: non-existent sub-project "asn_cache"
/bin/echo 'Warning: non-existent sub-project "cdd"'
Warning: non-existent sub-project "cdd"
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/data_loaders'
/usr/bin/make -C simple -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Nothing to be done for 'check_add_r'.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/simple'
/usr/bin/make -C alnmgr -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
/bin/echo 'Warning: non-existent sub-project "demo"'
Warning: non-existent sub-project "demo"
/bin/echo 'Warning: non-existent sub-project "unit_test"'
Warning: non-existent sub-project "unit_test"
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/alnmgr'
/bin/echo 'Warning: non-existent sub-project "cddalignview"'
Warning: non-existent sub-project "cddalignview"
/bin/echo 'Warning: non-existent sub-project "test"'
Warning: non-existent sub-project "test"
/bin/echo 'Warning: non-existent sub-project "manip"'
Warning: non-existent sub-project "manip"
/usr/bin/make -C eutils -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make -C egquery -w -j4 --jobserver-auth=11,12 check_add_r || exit 5
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils'
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
make[7]: Nothing to be done for 'check_add_r'.
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/egquery'
/usr/bin/make -C elink -w -j4 --jobserver-auth=11,12 check_add_r || exit 5
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils'
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
make[7]: Nothing to be done for 'check_add_r'.
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/elink'
/usr/bin/make -C epost -w -j4 --jobserver-auth=11,12 check_add_r || exit 5
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils'
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
make[7]: Nothing to be done for 'check_add_r'.
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/epost'
/usr/bin/make -C esearch -w -j4 --jobserver-auth=11,12 check_add_r || exit 5
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils'
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
make[7]: Nothing to be done for 'check_add_r'.
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/esearch'
/usr/bin/make -C espell -w -j4 --jobserver-auth=11,12 check_add_r || exit 5
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils'
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
make[7]: Nothing to be done for 'check_add_r'.
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/espell'
/usr/bin/make -C esummary -w -j4 --jobserver-auth=11,12 check_add_r || exit 5
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils'
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
make[7]: Nothing to be done for 'check_add_r'.
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/esummary'
/bin/echo 'Warning: non-existent sub-project "linkout"'
Warning: non-existent sub-project "linkout"
/usr/bin/make -C einfo -w -j4 --jobserver-auth=11,12 check_add_r || exit 5
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils'
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
make[7]: Nothing to be done for 'check_add_r'.
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/einfo'
/usr/bin/make -C uilist -w -j4 --jobserver-auth=11,12 check_add_r || exit 5
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils'
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
make[7]: Nothing to be done for 'check_add_r'.
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/uilist'
/usr/bin/make -C ehistory -w -j4 --jobserver-auth=11,12 check_add_r || exit 5
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils'
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
make[7]: Nothing to be done for 'check_add_r'.
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/ehistory'
/usr/bin/make -C api -w -j4 --jobserver-auth=11,12 check_add_r || exit 5
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils'
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
make[7]: Nothing to be done for 'check_add_r'.
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils/api'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/eutils'
/usr/bin/make -C edit -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
/bin/echo 'Warning: non-existent sub-project "unit_test"'
Warning: non-existent sub-project "unit_test"
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/edit'
/usr/bin/make -C cleanup -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
/bin/echo 'Warning: non-existent sub-project "test"'
Warning: non-existent sub-project "test"
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/cleanup'
/usr/bin/make -C format -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Nothing to be done for 'check_add_r'.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/format'
/bin/echo 'Warning: non-existent sub-project "validator"'
Warning: non-existent sub-project "validator"
/bin/echo 'Warning: non-existent sub-project "asniotest"'
Warning: non-existent sub-project "asniotest"
/bin/echo 'Warning: non-existent sub-project "align"'
Warning: non-existent sub-project "align"
/usr/bin/make -C seqmasks_io -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
/bin/echo 'Warning: non-existent sub-project "unit_test"'
Warning: non-existent sub-project "unit_test"
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/seqmasks_io'
/usr/bin/make -C align_format -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make -C unit_test -w -j4 --jobserver-auth=11,12 check_add_r || exit 5
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/align_format'
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
make[8]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/align_format/unit_test'
make[8]: warning: -j4 forced in submake: resetting jobserver mode.
make[8]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/align_format/unit_test'
TEST -- objtools/align_format/unit_test/align_format_unit_test
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/align_format/unit_test'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/align_format'
/bin/echo 'Warning: non-existent sub-project "snputil"'
Warning: non-existent sub-project "snputil"
/bin/echo 'Warning: non-existent sub-project "uudutil"'
Warning: non-existent sub-project "uudutil"
/bin/echo 'Warning: non-existent sub-project "variation"'
Warning: non-existent sub-project "variation"
/bin/echo 'Warning: non-existent sub-project "writers"'
Warning: non-existent sub-project "writers"
/bin/echo 'Warning: non-existent sub-project "import"'
Warning: non-existent sub-project "import"
/bin/echo 'Warning: non-existent sub-project "flatfile"'
Warning: non-existent sub-project "flatfile"
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools'
/bin/echo 'Warning: non-existent sub-project "ctools"'
Warning: non-existent sub-project "ctools"
/bin/echo 'Warning: non-existent sub-project "sra"'
Warning: non-existent sub-project "sra"
/usr/bin/make -C algo -w -j4 --jobserver-auth=7,8 check_add_r || exit 5
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make -C dustmask -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Nothing to be done for 'check_add_r'.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/dustmask'
/usr/bin/make -C winmask -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Nothing to be done for 'check_add_r'.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/winmask'
/bin/echo 'Warning: non-existent sub-project "sequence"'
Warning: non-existent sub-project "sequence"
/usr/bin/make -C blast -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make -C composition_adjustment -w -j4 --jobserver-auth=11,12 check_add_r || exit 5
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast'
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
make[7]: Nothing to be done for 'check_add_r'.
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/composition_adjustment'
/usr/bin/make -C core -w -j4 --jobserver-auth=11,12 check_add_r || exit 5
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast'
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
make[7]: Nothing to be done for 'check_add_r'.
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/core'
/usr/bin/make -C dbindex -w -j4 --jobserver-auth=11,12 check_add_r || exit 5
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast'
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make -C makeindex -w -j4 --jobserver-auth=13,14 check_add_r || exit 5
make[8]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/dbindex'
make[8]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/dbindex/makeindex'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/dbindex/makeindex'
SKIP -- algo/blast/dbindex/makeindex/makeindex
make[8]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/dbindex/makeindex'
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/dbindex'
/bin/echo 'Warning: non-existent sub-project "dbindex_search"'
Warning: non-existent sub-project "dbindex_search"
/usr/bin/make -C api -w -j4 --jobserver-auth=11,12 check_add_r || exit 5
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast'
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
make[7]: Nothing to be done for 'check_add_r'.
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/api'
/usr/bin/make -C proteinkmer -w -j4 --jobserver-auth=11,12 check_add_r || exit 5
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast'
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make -C unit_test -w -j4 --jobserver-auth=13,14 check_add_r || exit 5
make[8]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/proteinkmer'
make[8]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/proteinkmer/unit_test'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/proteinkmer/unit_test'
TEST -- algo/blast/proteinkmer/unit_test/proteinkmer_unit_test
make[8]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/proteinkmer/unit_test'
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/proteinkmer'
/usr/bin/make -C format -w -j4 --jobserver-auth=11,12 check_add_r || exit 5
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast'
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
make[7]: Nothing to be done for 'check_add_r'.
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/format'
/usr/bin/make -C blastinput -w -j4 --jobserver-auth=11,12 check_add_r || exit 5
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast'
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make -C unit_test -w -j4 --jobserver-auth=13,14 check_add_r || exit 5
make[8]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/blastinput'
make[8]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/blastinput/unit_test'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/blastinput/unit_test'
TEST -- algo/blast/blastinput/unit_test/blastinput_unit_test
make[8]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/blastinput/unit_test'
/bin/echo 'Warning: non-existent sub-project "demo"'
Warning: non-existent sub-project "demo"
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/blastinput'
/bin/echo 'Warning: non-existent sub-project "blast_sra_input"'
Warning: non-existent sub-project "blast_sra_input"
/usr/bin/make -C igblast -w -j4 --jobserver-auth=11,12 check_add_r || exit 5
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast'
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
make[7]: Nothing to be done for 'check_add_r'.
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/igblast'
/bin/echo 'Warning: non-existent sub-project "gumbel_params"'
Warning: non-existent sub-project "gumbel_params"
/usr/bin/make -C unit_tests -w -j4 --jobserver-auth=11,12 check_add_r || exit 5
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast'
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make -C blast_format -w -j4 --jobserver-auth=13,14 check_add_r || exit 5
make[8]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests'
make[8]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/blast_format'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/blast_format'
TEST -- algo/blast/unit_tests/blast_format/blast_format_unit_test
make[8]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/blast_format'
/usr/bin/make -C blastdb -w -j4 --jobserver-auth=13,14 check_add_r || exit 5
make[8]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests'
make[8]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/blastdb'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/blastdb'
TEST -- algo/blast/unit_tests/blastdb/bdbloader_unit_test
make[8]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/blastdb'
/usr/bin/make -C seqdb_reader -w -j4 --jobserver-auth=13,14 check_add_r || exit 5
make[8]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests'
make[8]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader'
TEST -- algo/blast/unit_tests/seqdb_reader/seqdb_unit_test
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader'
TEST -- algo/blast/unit_tests/seqdb_reader/seqdb_lmdb_unit_test
make[8]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader'
/usr/bin/make -C api -w -j4 --jobserver-auth=13,14 check_add_r || exit 5
make[8]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests'
make[8]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
TEST -- algo/blast/unit_tests/api/blast_unit_test
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
TEST -- algo/blast/unit_tests/api/aalookup_unit_test
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
TEST -- algo/blast/unit_tests/api/seqsrc_unit_test
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
TEST -- algo/blast/unit_tests/api/delta_unit_test
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
TEST -- algo/blast/unit_tests/api/ntlookup_unit_test
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
TEST -- algo/blast/unit_tests/api/seqinfosrc_unit_test
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
TEST -- algo/blast/unit_tests/api/setupfactory_unit_test
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
TEST -- algo/blast/unit_tests/api/search_strategy_unit_test
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
TEST -- algo/blast/unit_tests/api/redoalignment_unit_test
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
TEST -- algo/blast/unit_tests/api/queryinfo_unit_test
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
TEST -- algo/blast/unit_tests/api/querydata_unit_test
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
TEST -- algo/blast/unit_tests/api/pssmenginefreqratios_unit_test
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
TEST -- algo/blast/unit_tests/api/blastsetup_unit_test
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
TEST -- algo/blast/unit_tests/api/blastextend_unit_test
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
TEST -- algo/blast/unit_tests/api/blastdiag_unit_test
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
TEST -- algo/blast/unit_tests/api/pssmcreate_unit_test
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
TEST -- algo/blast/unit_tests/api/psiblast_iteration_unit_test
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
TEST -- algo/blast/unit_tests/api/hspfilter_besthit_unit_test
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
TEST -- algo/blast/unit_tests/api/hspfilter_culling_unit_test
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
TEST -- algo/blast/unit_tests/api/optionshandle_unit_test
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
TEST -- algo/blast/unit_tests/api/msa2pssm_unit_test
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
TEST -- algo/blast/unit_tests/api/tracebacksearch_unit_test
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
TEST -- algo/blast/unit_tests/api/traceback_unit_test
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
TEST -- algo/blast/unit_tests/api/psibl2seq_unit_test
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
TEST -- algo/blast/unit_tests/api/psiblast_unit_test
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
TEST -- algo/blast/unit_tests/api/prelimsearch_unit_test
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
TEST -- algo/blast/unit_tests/api/phiblast_unit_test
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
TEST -- algo/blast/unit_tests/api/split_query_unit_test
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
TEST -- algo/blast/unit_tests/api/scoreblk_unit_test
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
TEST -- algo/blast/unit_tests/api/hspstream_unit_test
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
TEST -- algo/blast/unit_tests/api/rps_unit_test
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
TEST -- algo/blast/unit_tests/api/gapinfo_unit_test
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
TEST -- algo/blast/unit_tests/api/blasthits_unit_test
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
TEST -- algo/blast/unit_tests/api/linkhsp_unit_test
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
TEST -- algo/blast/unit_tests/api/blastengine_unit_test
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
TEST -- algo/blast/unit_tests/api/subj_ranges_unit_test
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
TEST -- algo/blast/unit_tests/api/version_reference_unit_test
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
TEST -- algo/blast/unit_tests/api/ntscan_unit_test
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
TEST -- algo/blast/unit_tests/api/aascan_unit_test
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
TEST -- algo/blast/unit_tests/api/remote_blast_unit_test
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
TEST -- algo/blast/unit_tests/api/uniform_search_unit_test
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
TEST -- algo/blast/unit_tests/api/blastfilter_unit_test
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
TEST -- algo/blast/unit_tests/api/blastoptions_unit_test
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
TEST -- algo/blast/unit_tests/api/gencode_singleton_unit_test
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
TEST -- algo/blast/unit_tests/api/bl2seq_unit_test
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
TEST -- algo/blast/unit_tests/api/stat_unit_test
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
TEST -- algo/blast/unit_tests/api/magicblast_unit_test
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
TEST -- algo/blast/unit_tests/api/rmblast_blasthits_unit_test
make[9]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[9]: warning: -j4 forced in submake: resetting jobserver mode.
make[9]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
TEST -- algo/blast/unit_tests/api/rmblast_traceback_unit_test
make[8]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api'
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast'
/usr/bin/make -C segmask -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Nothing to be done for 'check_add_r'.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo/segmask'
/bin/echo 'Warning: non-existent sub-project "align"'
Warning: non-existent sub-project "align"
/bin/echo 'Warning: non-existent sub-project "structure"'
Warning: non-existent sub-project "structure"
/bin/echo 'Warning: non-existent sub-project "gnomon"'
Warning: non-existent sub-project "gnomon"
/bin/echo 'Warning: non-existent sub-project "tree"'
Warning: non-existent sub-project "tree"
/bin/echo 'Warning: non-existent sub-project "phy_tree"'
Warning: non-existent sub-project "phy_tree"
/bin/echo 'Warning: non-existent sub-project "seqqa"'
Warning: non-existent sub-project "seqqa"
/bin/echo 'Warning: non-existent sub-project "cobalt"'
Warning: non-existent sub-project "cobalt"
/bin/echo 'Warning: non-existent sub-project "text"'
Warning: non-existent sub-project "text"
/bin/echo 'Warning: non-existent sub-project "volume_merge"'
Warning: non-existent sub-project "volume_merge"
/bin/echo 'Warning: non-existent sub-project "primer"'
Warning: non-existent sub-project "primer"
/bin/echo 'Warning: non-existent sub-project "id_mapper"'
Warning: non-existent sub-project "id_mapper"
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/algo'
/usr/bin/make -C misc -w -j4 --jobserver-auth=7,8 check_add_r || exit 5
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make -C third_party -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/misc'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[6]: Nothing to be done for 'check_add_r'.
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/misc/third_party'
/usr/bin/make -C third_party_static -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/misc'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
NOTE: Skipping project third_party_static due to unmet requirements:
-DLL
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/misc/third_party_static'
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
make[7]: Nothing to be done for 'mark-as-disabled_r'.
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/misc/third_party_static'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/misc/third_party_static'
/bin/echo 'Warning: non-existent sub-project "clog"'
Warning: non-existent sub-project "clog"
/bin/echo 'Warning: non-existent sub-project "grid_cgi"'
Warning: non-existent sub-project "grid_cgi"
/bin/echo 'Warning: non-existent sub-project "xmlwrapp"'
Warning: non-existent sub-project "xmlwrapp"
/bin/echo 'Warning: non-existent sub-project "eutils_client"'
Warning: non-existent sub-project "eutils_client"
/bin/echo 'Warning: non-existent sub-project "hydra_client"'
Warning: non-existent sub-project "hydra_client"
/bin/echo 'Warning: non-existent sub-project "discrepancy"'
Warning: non-existent sub-project "discrepancy"
/bin/echo 'Warning: non-existent sub-project "xmlreaders"'
Warning: non-existent sub-project "xmlreaders"
/bin/echo 'Warning: non-existent sub-project "hgvs"'
Warning: non-existent sub-project "hgvs"
/bin/echo 'Warning: non-existent sub-project "netstorage"'
Warning: non-existent sub-project "netstorage"
/usr/bin/make -C jsonwrapp -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/misc'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
/usr/bin/make -C test -w -j4 --jobserver-auth=11,12 check_add_r || exit 5
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/misc/jsonwrapp'
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
make[8]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/misc/jsonwrapp/test'
make[8]: warning: -j4 forced in submake: resetting jobserver mode.
make[8]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/misc/jsonwrapp/test'
TEST -- misc/jsonwrapp/test/test_jsonwrapp
make[8]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/misc/jsonwrapp/test'
make[8]: warning: -j4 forced in submake: resetting jobserver mode.
make[8]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/misc/jsonwrapp/test'
TEST -- misc/jsonwrapp/test/test_jsonwrapp10
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/misc/jsonwrapp/test'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/misc/jsonwrapp'
/bin/echo 'Warning: non-existent sub-project "biosample_util"'
Warning: non-existent sub-project "biosample_util"
/bin/echo 'Warning: non-existent sub-project "data_loaders_util"'
Warning: non-existent sub-project "data_loaders_util"
/bin/echo 'Warning: non-existent sub-project "lapackwrapp"'
Warning: non-existent sub-project "lapackwrapp"
/bin/echo 'Warning: non-existent sub-project "pmcidconv_client"'
Warning: non-existent sub-project "pmcidconv_client"
/bin/echo 'Warning: non-existent sub-project "fix_pub"'
Warning: non-existent sub-project "fix_pub"
/bin/echo 'Warning: non-existent sub-project "cgi_redirect"'
Warning: non-existent sub-project "cgi_redirect"
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/misc'
/bin/echo 'Warning: non-existent sub-project "gui"'
Warning: non-existent sub-project "gui"
/usr/bin/make -C app -w -j4 --jobserver-auth=7,8 check_add_r || exit 5
make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build'
make[5]: warning: -j4 forced in submake: resetting jobserver mode.
/bin/echo 'Warning: non-existent sub-project "asn2asn"'
Warning: non-existent sub-project "asn2asn"
/bin/echo 'Warning: non-existent sub-project "asn2fasta"'
Warning: non-existent sub-project "asn2fasta"
/bin/echo 'Warning: non-existent sub-project "asn2flat"'
Warning: non-existent sub-project "asn2flat"
/bin/echo 'Warning: non-existent sub-project "flat2asn"'
Warning: non-existent sub-project "flat2asn"
/bin/echo 'Warning: non-existent sub-project "asnval"'
Warning: non-existent sub-project "asnval"
/bin/echo 'Warning: non-existent sub-project "asn_cleanup"'
Warning: non-existent sub-project "asn_cleanup"
/bin/echo 'Warning: non-existent sub-project "id1_fetch"'
Warning: non-existent sub-project "id1_fetch"
/usr/bin/make -C blast -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
SKIP -- app/blast/blastp
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
SKIP -- app/blast/blastn
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
SKIP -- app/blast/blastx
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
SKIP -- app/blast/tblastn
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
SKIP -- app/blast/tblastx
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
SKIP -- app/blast/psiblast
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
SKIP -- app/blast/rpsblast
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
SKIP -- app/blast/rpstblastn
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
SKIP -- app/blast/blast_formatter
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
SKIP -- app/blast/blast_report
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
SKIP -- app/blast/deltablast
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
SKIP -- app/blast/seedtop
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blast'
/bin/echo 'Warning: non-existent sub-project "convert_seq"'
Warning: non-existent sub-project "convert_seq"
/bin/echo 'Warning: non-existent sub-project "nmer_repeats"'
Warning: non-existent sub-project "nmer_repeats"
/bin/echo 'Warning: non-existent sub-project "objmgr"'
Warning: non-existent sub-project "objmgr"
/bin/echo 'Warning: non-existent sub-project "gi2taxid"'
Warning: non-existent sub-project "gi2taxid"
/bin/echo 'Warning: non-existent sub-project "netschedule"'
Warning: non-existent sub-project "netschedule"
/bin/echo 'Warning: non-existent sub-project "grid"'
Warning: non-existent sub-project "grid"
/bin/echo 'Warning: non-existent sub-project "netstorage"'
Warning: non-existent sub-project "netstorage"
/bin/echo 'Warning: non-existent sub-project "igblast"'
Warning: non-existent sub-project "igblast"
/usr/bin/make -C winmasker -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/winmasker'
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/winmasker'
SKIP -- app/winmasker/winmasker
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/winmasker'
/usr/bin/make -C dustmasker -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/dustmasker'
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/dustmasker'
SKIP -- app/dustmasker/dustmasker
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/dustmasker'
/usr/bin/make -C segmasker -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/segmasker'
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/segmasker'
SKIP -- app/segmasker/segmasker
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/segmasker'
/usr/bin/make -C blastdb -w -j4 --jobserver-auth=9,10 check_add_r || exit 5
make[6]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app'
make[6]: warning: -j4 forced in submake: resetting jobserver mode.
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
SKIP -- app/blastdb/blastdbcmd
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
SKIP -- app/blastdb/makeblastdb
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
SKIP -- app/blastdb/blastdb_aliastool
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
SKIP -- app/blastdb/blastdbcheck
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
SKIP -- app/blastdb/convert2blastmask
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
SKIP -- app/blastdb/blastdbcp
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
SKIP -- app/blastdb/makeprofiledb
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
SKIP -- app/blastdb/blastdb_convert
make[7]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
make[7]: warning: -j4 forced in submake: resetting jobserver mode.
make[7]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
SKIP -- app/blastdb/blastdb_path
make[6]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app/blastdb'
/bin/echo 'Warning: non-existent sub-project "vecscreen"'
Warning: non-existent sub-project "vecscreen"
/bin/echo 'Warning: non-existent sub-project "agpconvert"'
Warning: non-existent sub-project "agpconvert"
/bin/echo 'Warning: non-existent sub-project "id2_fetch"'
Warning: non-existent sub-project "id2_fetch"
/bin/echo 'Warning: non-existent sub-project "agp_validate"'
Warning: non-existent sub-project "agp_validate"
/bin/echo 'Warning: non-existent sub-project "objextract"'
Warning: non-existent sub-project "objextract"
/bin/echo 'Warning: non-existent sub-project "bdb_env_keeper"'
Warning: non-existent sub-project "bdb_env_keeper"
/bin/echo 'Warning: non-existent sub-project "nw_aligner"'
Warning: non-existent sub-project "nw_aligner"
/bin/echo 'Warning: non-existent sub-project "speedtest"'
Warning: non-existent sub-project "speedtest"
/bin/echo 'Warning: non-existent sub-project "idmapper"'
Warning: non-existent sub-project "idmapper"
/bin/echo 'Warning: non-existent sub-project "formatguess"'
Warning: non-existent sub-project "formatguess"
/bin/echo 'Warning: non-existent sub-project "multireader"'
Warning: non-existent sub-project "multireader"
/bin/echo 'Warning: non-existent sub-project "read_blast_result"'
Warning: non-existent sub-project "read_blast_result"
/bin/echo 'Warning: non-existent sub-project "splign"'
Warning: non-existent sub-project "splign"
/bin/echo 'Warning: non-existent sub-project "hfilter"'
Warning: non-existent sub-project "hfilter"
/bin/echo 'Warning: non-existent sub-project "annotwriter"'
Warning: non-existent sub-project "annotwriter"
/bin/echo 'Warning: non-existent sub-project "compart"'
Warning: non-existent sub-project "compart"
/bin/echo 'Warning: non-existent sub-project "streamtest"'
Warning: non-existent sub-project "streamtest"
/bin/echo 'Warning: non-existent sub-project "lds2_indexer"'
Warning: non-existent sub-project "lds2_indexer"
/bin/echo 'Warning: non-existent sub-project "discrepancy_report"'
Warning: non-existent sub-project "discrepancy_report"
/bin/echo 'Warning: non-existent sub-project "biosample_chk"'
Warning: non-existent sub-project "biosample_chk"
/bin/echo 'Warning: non-existent sub-project "bsdiff"'
Warning: non-existent sub-project "bsdiff"
/bin/echo 'Warning: non-existent sub-project "gap_stats"'
Warning: non-existent sub-project "gap_stats"
/bin/echo 'Warning: non-existent sub-project "table2asn"'
Warning: non-existent sub-project "table2asn"
/bin/echo 'Warning: non-existent sub-project "srcchk"'
Warning: non-existent sub-project "srcchk"
/bin/echo 'Warning: non-existent sub-project "tableval"'
Warning: non-existent sub-project "tableval"
/bin/echo 'Warning: non-existent sub-project "ncbi_encrypt"'
Warning: non-existent sub-project "ncbi_encrypt"
/bin/echo 'Warning: non-existent sub-project "ssub_fork"'
Warning: non-existent sub-project "ssub_fork"
/bin/echo 'Warning: non-existent sub-project "asn_cache"'
Warning: non-existent sub-project "asn_cache"
/bin/echo 'Warning: non-existent sub-project "magicblast"'
Warning: non-existent sub-project "magicblast"
/bin/echo 'Warning: non-existent sub-project "multipattern"'
Warning: non-existent sub-project "multipattern"
/bin/echo 'Warning: non-existent sub-project "prt2fsm"'
Warning: non-existent sub-project "prt2fsm"
/bin/echo 'Warning: non-existent sub-project "pub_report"'
Warning: non-existent sub-project "pub_report"
/bin/echo 'Warning: non-existent sub-project "gff_deconcat"'
Warning: non-existent sub-project "gff_deconcat"
/bin/echo 'Warning: non-existent sub-project "sub_fuse"'
Warning: non-existent sub-project "sub_fuse"
/bin/echo 'Warning: non-existent sub-project "feat_import"'
Warning: non-existent sub-project "feat_import"
/bin/echo 'Warning: non-existent sub-project "split_cache"'
Warning: non-existent sub-project "split_cache"
/bin/echo 'Warning: non-existent sub-project "wig2table"'
Warning: non-existent sub-project "wig2table"
/bin/echo 'Warning: non-existent sub-project "netcache"'
Warning: non-existent sub-project "netcache"
/bin/echo 'Warning: non-existent sub-project "rmblastn"'
Warning: non-existent sub-project "rmblastn"
/bin/echo 'Warning: non-existent sub-project "dblb"'
Warning: non-existent sub-project "dblb"
/bin/echo 'Warning: non-existent sub-project "tls"'
Warning: non-existent sub-project "tls"
/bin/echo 'Warning: non-existent sub-project "idfetch"'
Warning: non-existent sub-project "idfetch"
/bin/echo 'Warning: non-existent sub-project "pubseq_gateway"'
Warning: non-existent sub-project "pubseq_gateway"
make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/app'
/bin/echo 'Warning: non-existent sub-project "sample"'
Warning: non-existent sub-project "sample"
/bin/echo 'Warning: non-existent sub-project "internal"'
Warning: non-existent sub-project "internal"
make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build'
----------------------------------------------------------------------
Building check script...
SKIP -- objtools/blast/seqdb_reader/test/seqdb_perf (unmet CHECK_REQUIRES)
SKIP -- objtools/blast/seqdb_reader/test/seqdb_perf (unmet CHECK_REQUIRES)
SKIP -- objtools/blast/seqdb_reader/test/seqdb_perf (unmet CHECK_REQUIRES)
SKIP -- objtools/blast/seqdb_writer/unit_test/writedb_unit_test (unmet CHECK_REQUIRES)
SKIP -- objtools/blast/seqdb_writer/unit_test/writedb_lmdb_unit_test (unmet CHECK_REQUIRES)
SKIP -- objtools/blast/blastdb_format/unit_test/blastdb_format_unit_test (unmet CHECK_REQUIRES)
SKIP -- objtools/align_format/unit_test/align_format_unit_test (unmet CHECK_REQUIRES)
SKIP -- algo/blast/blastinput/unit_test/blastinput_unit_test (unmet CHECK_REQUIRES)
SKIP -- algo/blast/unit_tests/blast_format/blast_format_unit_test (unmet CHECK_REQUIRES)
SKIP -- algo/blast/unit_tests/blastdb/bdbloader_unit_test (unmet CHECK_REQUIRES)
SKIP -- algo/blast/unit_tests/seqdb_reader/seqdb_unit_test (unmet CHECK_REQUIRES)
SKIP -- algo/blast/unit_tests/seqdb_reader/seqdb_lmdb_unit_test (unmet CHECK_REQUIRES)
SKIP -- algo/blast/unit_tests/api/blast_unit_test (unmet CHECK_REQUIRES)
SKIP -- algo/blast/unit_tests/api/aalookup_unit_test (unmet CHECK_REQUIRES)
SKIP -- algo/blast/unit_tests/api/seqsrc_unit_test (unmet CHECK_REQUIRES)
SKIP -- algo/blast/unit_tests/api/delta_unit_test (unmet CHECK_REQUIRES)
SKIP -- algo/blast/unit_tests/api/ntlookup_unit_test (unmet CHECK_REQUIRES)
SKIP -- algo/blast/unit_tests/api/seqinfosrc_unit_test (unmet CHECK_REQUIRES)
SKIP -- algo/blast/unit_tests/api/setupfactory_unit_test (unmet CHECK_REQUIRES)
SKIP -- algo/blast/unit_tests/api/search_strategy_unit_test (unmet CHECK_REQUIRES)
SKIP -- algo/blast/unit_tests/api/redoalignment_unit_test (unmet CHECK_REQUIRES)
SKIP -- algo/blast/unit_tests/api/queryinfo_unit_test (unmet CHECK_REQUIRES)
SKIP -- algo/blast/unit_tests/api/querydata_unit_test (unmet CHECK_REQUIRES)
SKIP -- algo/blast/unit_tests/api/pssmenginefreqratios_unit_test (unmet CHECK_REQUIRES)
SKIP -- algo/blast/unit_tests/api/blastsetup_unit_test (unmet CHECK_REQUIRES)
SKIP -- algo/blast/unit_tests/api/blastextend_unit_test (unmet CHECK_REQUIRES)
SKIP -- algo/blast/unit_tests/api/pssmcreate_unit_test (unmet CHECK_REQUIRES)
SKIP -- algo/blast/unit_tests/api/psiblast_iteration_unit_test (unmet CHECK_REQUIRES)
SKIP -- algo/blast/unit_tests/api/hspfilter_besthit_unit_test (unmet CHECK_REQUIRES)
SKIP -- algo/blast/unit_tests/api/hspfilter_culling_unit_test (unmet CHECK_REQUIRES)
SKIP -- algo/blast/unit_tests/api/optionshandle_unit_test (unmet CHECK_REQUIRES)
SKIP -- algo/blast/unit_tests/api/msa2pssm_unit_test (unmet CHECK_REQUIRES)
SKIP -- algo/blast/unit_tests/api/tracebacksearch_unit_test (unmet CHECK_REQUIRES)
SKIP -- algo/blast/unit_tests/api/traceback_unit_test (unmet CHECK_REQUIRES)
SKIP -- algo/blast/unit_tests/api/psibl2seq_unit_test (unmet CHECK_REQUIRES)
SKIP -- algo/blast/unit_tests/api/psiblast_unit_test (unmet CHECK_REQUIRES)
SKIP -- algo/blast/unit_tests/api/prelimsearch_unit_test (unmet CHECK_REQUIRES)
SKIP -- algo/blast/unit_tests/api/phiblast_unit_test (unmet CHECK_REQUIRES)
SKIP -- algo/blast/unit_tests/api/split_query_unit_test (unmet CHECK_REQUIRES)
SKIP -- algo/blast/unit_tests/api/scoreblk_unit_test (unmet CHECK_REQUIRES)
SKIP -- algo/blast/unit_tests/api/hspstream_unit_test (unmet CHECK_REQUIRES)
SKIP -- algo/blast/unit_tests/api/rps_unit_test (unmet CHECK_REQUIRES)
SKIP -- algo/blast/unit_tests/api/gapinfo_unit_test (unmet CHECK_REQUIRES)
SKIP -- algo/blast/unit_tests/api/blasthits_unit_test (unmet CHECK_REQUIRES)
SKIP -- algo/blast/unit_tests/api/linkhsp_unit_test (unmet CHECK_REQUIRES)
SKIP -- algo/blast/unit_tests/api/blastengine_unit_test (unmet CHECK_REQUIRES)
SKIP -- algo/blast/unit_tests/api/subj_ranges_unit_test (unmet CHECK_REQUIRES)
SKIP -- algo/blast/unit_tests/api/version_reference_unit_test (unmet CHECK_REQUIRES)
SKIP -- algo/blast/unit_tests/api/ntscan_unit_test (unmet CHECK_REQUIRES)
SKIP -- algo/blast/unit_tests/api/remote_blast_unit_test (unmet CHECK_REQUIRES)
SKIP -- algo/blast/unit_tests/api/uniform_search_unit_test (unmet CHECK_REQUIRES)
SKIP -- algo/blast/unit_tests/api/blastfilter_unit_test (unmet CHECK_REQUIRES)
SKIP -- algo/blast/unit_tests/api/blastoptions_unit_test (unmet CHECK_REQUIRES)
SKIP -- algo/blast/unit_tests/api/gencode_singleton_unit_test (unmet CHECK_REQUIRES)
SKIP -- algo/blast/unit_tests/api/bl2seq_unit_test (unmet CHECK_REQUIRES)
SKIP -- algo/blast/unit_tests/api/stat_unit_test (unmet CHECK_REQUIRES)
SKIP -- algo/blast/unit_tests/api/magicblast_unit_test (unmet CHECK_REQUIRES)
SKIP -- algo/blast/unit_tests/api/rmblast_blasthits_unit_test (unmet CHECK_REQUIRES)
SKIP -- algo/blast/unit_tests/api/rmblast_traceback_unit_test (unmet CHECK_REQUIRES)
Done.
Testing, please wait...
OK -- [serial/datatool] datatool.sh (real 1.46, user 0.57, sys 0.30)
SKP -- [serial/datatool] datatool_xml.sh
ERR [200] -- [objtools/blast/gene_info_reader/unit_test] gene_info_unit_test (real 0.15, user 0.03, sys 0.03)
OK -- [algo/blast/proteinkmer/unit_test] proteinkmer_unit_test (real 16.95, user 9.10, sys 6.49)
ERR [200] -- [algo/blast/unit_tests/api] blastdiag_unit_test (real 0.10, user 0.06, sys 0.00)
ERR [200] -- [algo/blast/unit_tests/api] aascan_unit_test (real 0.20, user 0.14, sys 0.01)
ABS -- [misc/jsonwrapp/test] test_jsonwrapp
ABS -- [misc/jsonwrapp/test] test_jsonwrapp10
Succeeded : 2
Timeout : 0
Failed : 3
Absent : 3
make[3]: *** [/<<PKGBUILDDIR>>/c++/src/build-system/Makefile.meta_r:46: check_r.real] Error 7
make[3]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build'
make[2]: *** [Makefile:33: check] Error 2
make[2]: Leaving directory '/<<PKGBUILDDIR>>/c++'
dh_auto_test: error: cd c\+\+ && /usr/bin/make -j4 check "TESTSUITEFLAGS=-j4 --verbose" VERBOSE=1 returned exit code 2
make[1]: [debian/rules:81: override_dh_auto_test] Error 25 (ignored)
c++/BUILD/build/check.sh concat_err
cat c++/BUILD/build/check.sh.out_err
ERR [200] -- [objtools/blast/gene_info_reader/unit_test] gene_info_unit_test (real 0.15, user 0.03, sys 0.03)
ERR [200] -- [algo/blast/unit_tests/api] blastdiag_unit_test (real 0.10, user 0.06, sys 0.00)
ERR [200] -- [algo/blast/unit_tests/api] aascan_unit_test (real 0.20, user 0.14, sys 0.01)
======================================================================
gene_info_unit_test
======================================================================
16248/000/0000/PB 88603F7835D0F5A1 0001/0001 2022-10-29T11:32:43.007430 test2019 UNK_CLIENT UNK_SESSION gene_info_unit_test start /<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test/gene_info_unit_test
16248/000/0000/PB 88603F7835D0F5A1 0002/0002 2022-10-29T11:32:43.007970 test2019 UNK_CLIENT UNK_SESSION gene_info_unit_test extra ncbi_app_username=buildd&ncbi_app_path=/build/ncbi-blast%2B-iztKfv/ncbi-blast%2B-2.12.0%2Bds/c%2B%2B/BUILD/build/objtools/blast/gene_info_reader/unit_test/gene_info_unit_test&ncbi_app_build_date=Oct+29+2022+03:22:11&ncbi_app_package_name=blast&ncbi_app_package_version=2.12.0&ncbi_app_package_date=Oct+29+2022+03:22:11&ncbi_app_version=2.12.0
Running 4 test cases...
*** No errors detected
Executed 4 test cases.
Test setup error:
*** No errors detected
16248/000/0000/PE 88603F7835D0F5A1 0003/0003 2022-10-29T11:32:43.013224 test2019 UNK_CLIENT UNK_SESSION gene_info_unit_test stop 200 0.010778903
real 0.15
user 0.03
sys 0.03
Start time : 10/29/2022 11:32:42
Stop time : 10/29/2022 11:32:43
Load averages: 1.51 3.69 5.84
@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
@@@ EXIT CODE: 200
======================================================================
blastdiag_unit_test
======================================================================
16397/000/0000/PB 8860400D35D0F6C1 0001/0001 2022-10-29T11:33:00.303262 test2019 UNK_CLIENT UNK_SESSION blastdiag_unit_test start /<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api/blastdiag_unit_test
16397/000/0000/PB 8860400D35D0F6C1 0002/0002 2022-10-29T11:33:00.303803 test2019 UNK_CLIENT UNK_SESSION blastdiag_unit_test extra ncbi_app_username=buildd&ncbi_app_path=/build/ncbi-blast%2B-iztKfv/ncbi-blast%2B-2.12.0%2Bds/c%2B%2B/BUILD/build/algo/blast/unit_tests/api/blastdiag_unit_test&ncbi_app_build_date=Oct+29+2022+03:22:11&ncbi_app_package_name=blast&ncbi_app_package_version=2.12.0&ncbi_app_package_date=Oct+29+2022+03:22:11&ncbi_app_version=2.12.0
Running 3 test cases...
*** No errors detected
Executed 3 test cases.
Test setup error:
*** No errors detected
16397/000/0000/PE 8860400D35D0F6C1 0003/0003 2022-10-29T11:33:00.309068 test2019 UNK_CLIENT UNK_SESSION blastdiag_unit_test stop 200 0.010571002
real 0.10
user 0.06
sys 0.00
Start time : 10/29/2022 11:33:00
Stop time : 10/29/2022 11:33:00
Load averages: 1.69 3.62 5.78
@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
@@@ EXIT CODE: 200
======================================================================
aascan_unit_test
======================================================================
16469/000/0000/PB 8860405535D0F6C1 0001/0001 2022-10-29T11:33:00.618862 test2019 UNK_CLIENT UNK_SESSION aascan_unit_test start /<<PKGBUILDDIR>>/c++/BUILD/build/algo/blast/unit_tests/api/aascan_unit_test
16469/000/0000/PB 8860405535D0F6C1 0002/0002 2022-10-29T11:33:00.619385 test2019 UNK_CLIENT UNK_SESSION aascan_unit_test extra ncbi_app_username=buildd&ncbi_app_path=/build/ncbi-blast%2B-iztKfv/ncbi-blast%2B-2.12.0%2Bds/c%2B%2B/BUILD/build/algo/blast/unit_tests/api/aascan_unit_test&ncbi_app_build_date=Oct+29+2022+03:22:11&ncbi_app_package_name=blast&ncbi_app_package_version=2.12.0&ncbi_app_package_date=Oct+29+2022+03:22:11&ncbi_app_version=2.12.0
Running 4 test cases...
*** No errors detected
Executed 4 test cases.
Test setup error:
*** No errors detected
16469/000/0000/PE 8860405535D0F6C1 0003/0003 2022-10-29T11:33:00.626143 test2019 UNK_CLIENT UNK_SESSION aascan_unit_test stop 200 0.015712022
real 0.20
user 0.14
sys 0.01
Start time : 10/29/2022 11:33:00
Stop time : 10/29/2022 11:33:00
Load averages: 1.69 3.62 5.78
@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
@@@ EXIT CODE: 200
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--sourcedirectory=c\+\+
dh_prep -a -O--sourcedirectory=c\+\+
dh_installdirs -a -O--sourcedirectory=c\+\+
debian/rules override_dh_auto_install-arch
make[1]: Entering directory '/<<PKGBUILDDIR>>'
# cp c++/BUILD/lib/*.so debian/ncbi-blast+/usr/lib/ncbi-blast+/
cp c++/BUILD/bin/* debian/ncbi-blast+/usr/bin/
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_install-arch
make[1]: Entering directory '/<<PKGBUILDDIR>>'
# dh_install
mv debian/ncbi-blast+/usr/bin/rpsblast debian/ncbi-blast+/usr/bin/rpsblast+
mv debian/ncbi-blast+/usr/bin/seedtop debian/ncbi-blast+/usr/bin/seedtop+
mv debian/ncbi-blast+/usr/bin/get_species_taxids.sh \
debian/ncbi-blast+/usr/bin/get_species_taxids
mv debian/ncbi-blast+/usr/bin/cleanup-blastdb-volumes.py \
debian/ncbi-blast+/usr/bin/cleanup-blastdb-volumes
mv debian/ncbi-blast+/usr/bin/legacy_blast.pl debian/ncbi-blast+/usr/bin/legacy_blast
mv debian/ncbi-blast+/usr/bin/update_blastdb.pl debian/ncbi-blast+/usr/bin/update_blastdb
sed -e '1s/$/3/' debian/ncbi-blast+/usr/bin/windowmasker_2.2.22_adapter.py \
> debian/ncbi-blast+/usr/bin/windowmasker_2.2.22_adapter
2to3 -w --nobackups debian/ncbi-blast+/usr/bin/windowmasker_2.2.22_adapter
RefactoringTool: Skipping optional fixer: buffer
RefactoringTool: Skipping optional fixer: idioms
RefactoringTool: Skipping optional fixer: set_literal
RefactoringTool: Skipping optional fixer: ws_comma
RefactoringTool: Refactored debian/ncbi-blast+/usr/bin/windowmasker_2.2.22_adapter
RefactoringTool: Files that were modified:
RefactoringTool: debian/ncbi-blast+/usr/bin/windowmasker_2.2.22_adapter
--- debian/ncbi-blast+/usr/bin/windowmasker_2.2.22_adapter (original)
+++ debian/ncbi-blast+/usr/bin/windowmasker_2.2.22_adapter (refactored)
@@ -79,7 +79,7 @@
while True:
if arg_pos >= len( sys.argv ): break
arg = sys.argv[arg_pos]
- if arg not in old_wm_opt_info.keys(): tmpres.append( arg )
+ if arg not in list(old_wm_opt_info.keys()): tmpres.append( arg )
else:
if arg == '-convert':
arg_pos += 1
@@ -159,7 +159,7 @@
elif state == 'copy':
result.append( arg )
state = 'check'
- elif arg in old_wm_opt_info.keys():
+ elif arg in list(old_wm_opt_info.keys()):
if arg in excludes[wm_mode]:
if not old_wm_opt_info[arg]: state = 'skip'
else:
@@ -172,13 +172,13 @@
global HELP_STR
mode = 'exec'
if len( sys.argv ) <= 1:
- print HELP_STR
+ print(HELP_STR)
return
else:
if sys.argv[1] == '--print-only':
mode = 'print'
if len( sys.argv ) <= 2:
- print HELP_STR
+ print(HELP_STR)
return
else:
wm_name = sys.argv[2]
@@ -188,9 +188,9 @@
start_idx = 1
new_args = process( start_idx )
result_str = wm_name + ' ' + ' '.join( new_args )
- if mode == 'print': print result_str
+ if mode == 'print': print(result_str)
else:
- print 'running "' + result_str + '"'
+ print('running "' + result_str + '"')
os.system( result_str )
if __name__ == '__main__':
chmod +x debian/ncbi-blast+/usr/bin/windowmasker_2.2.22_adapter
rm debian/ncbi-blast+/usr/bin/windowmasker_2.2.22_adapter.py*
rm -f debian/ncbi-blast+/usr/bin/*test* debian/ncbi-blast+/usr/bin/seqdb_demo \
debian/ncbi-blast+/usr/bin/datatool debian/ncbi-blast+/usr/bin/run_with_lock \
debian/ncbi-blast+/usr/bin/project_tree_builder
mkdir c++/BUILD/lib.observed
d=debian/ncbi-blast+/usr/bin; \
while :; do \
(for x in $d/*; do \
readelf -d $x 2>/dev/null \
| sed -ne 's/.*NEEDED.* \[\(.*\)]$/\1/p'; \
done; rm -f c++/BUILD/lib.observed/*) | sort -u | while read l; do \
[ -f debian/ncbi-blast+/usr/lib/ncbi-blast+/$l \
-o \! -f c++/BUILD/lib/$l ] || \
cp -av c++/BUILD/lib/$l c++/BUILD/lib.observed/; \
done; \
[ -n "$(ls c++/BUILD/lib.observed)" ] || break; \
echo ------------------------------------------------------------; \
cp -a c++/BUILD/lib.observed/* debian/ncbi-blast+/usr/lib/ncbi-blast+; \
d=c++/BUILD/lib.observed; \
done
'c++/BUILD/lib/libalign_format.so' -> 'c++/BUILD/lib.observed/libalign_format.so'
'c++/BUILD/lib/libblast.so' -> 'c++/BUILD/lib.observed/libblast.so'
'c++/BUILD/lib/libblastdb.so' -> 'c++/BUILD/lib.observed/libblastdb.so'
'c++/BUILD/lib/libblastdb_format.so' -> 'c++/BUILD/lib.observed/libblastdb_format.so'
'c++/BUILD/lib/libblastinput.so' -> 'c++/BUILD/lib.observed/libblastinput.so'
'c++/BUILD/lib/libgene_info.so' -> 'c++/BUILD/lib.observed/libgene_info.so'
'c++/BUILD/lib/libncbi_xloader_blastdb.so' -> 'c++/BUILD/lib.observed/libncbi_xloader_blastdb.so'
'c++/BUILD/lib/libncbi_xloader_blastdb_rmt.so' -> 'c++/BUILD/lib.observed/libncbi_xloader_blastdb_rmt.so'
'c++/BUILD/lib/libncbi_xloader_genbank.so' -> 'c++/BUILD/lib.observed/libncbi_xloader_genbank.so'
'c++/BUILD/lib/libncbi_xreader.so' -> 'c++/BUILD/lib.observed/libncbi_xreader.so'
'c++/BUILD/lib/libncbi_xreader_id2.so' -> 'c++/BUILD/lib.observed/libncbi_xreader_id2.so'
'c++/BUILD/lib/libscoremat.so' -> 'c++/BUILD/lib.observed/libscoremat.so'
'c++/BUILD/lib/libseq.so' -> 'c++/BUILD/lib.observed/libseq.so'
'c++/BUILD/lib/libseqdb.so' -> 'c++/BUILD/lib.observed/libseqdb.so'
'c++/BUILD/lib/libseqmasks_io.so' -> 'c++/BUILD/lib.observed/libseqmasks_io.so'
'c++/BUILD/lib/libseqset.so' -> 'c++/BUILD/lib.observed/libseqset.so'
'c++/BUILD/lib/libutrtprof.so' -> 'c++/BUILD/lib.observed/libutrtprof.so'
'c++/BUILD/lib/libwritedb.so' -> 'c++/BUILD/lib.observed/libwritedb.so'
'c++/BUILD/lib/libxalgoblastdbindex.so' -> 'c++/BUILD/lib.observed/libxalgoblastdbindex.so'
'c++/BUILD/lib/libxalgodustmask.so' -> 'c++/BUILD/lib.observed/libxalgodustmask.so'
'c++/BUILD/lib/libxalgosegmask.so' -> 'c++/BUILD/lib.observed/libxalgosegmask.so'
'c++/BUILD/lib/libxalgowinmask.so' -> 'c++/BUILD/lib.observed/libxalgowinmask.so'
'c++/BUILD/lib/libxblast.so' -> 'c++/BUILD/lib.observed/libxblast.so'
'c++/BUILD/lib/libxblastformat.so' -> 'c++/BUILD/lib.observed/libxblastformat.so'
'c++/BUILD/lib/libxconnect.so' -> 'c++/BUILD/lib.observed/libxconnect.so'
'c++/BUILD/lib/libxncbi.so' -> 'c++/BUILD/lib.observed/libxncbi.so'
'c++/BUILD/lib/libxnetblast.so' -> 'c++/BUILD/lib.observed/libxnetblast.so'
'c++/BUILD/lib/libxobjmgr.so' -> 'c++/BUILD/lib.observed/libxobjmgr.so'
'c++/BUILD/lib/libxobjread.so' -> 'c++/BUILD/lib.observed/libxobjread.so'
'c++/BUILD/lib/libxobjutil.so' -> 'c++/BUILD/lib.observed/libxobjutil.so'
'c++/BUILD/lib/libxser.so' -> 'c++/BUILD/lib.observed/libxser.so'
'c++/BUILD/lib/libxutil.so' -> 'c++/BUILD/lib.observed/libxutil.so'
------------------------------------------------------------
'c++/BUILD/lib/libbiblio.so' -> 'c++/BUILD/lib.observed/libbiblio.so'
'c++/BUILD/lib/libblast_services.so' -> 'c++/BUILD/lib.observed/libblast_services.so'
'c++/BUILD/lib/libblastxml.so' -> 'c++/BUILD/lib.observed/libblastxml.so'
'c++/BUILD/lib/libblastxml2.so' -> 'c++/BUILD/lib.observed/libblastxml2.so'
'c++/BUILD/lib/libcomposition_adjustment.so' -> 'c++/BUILD/lib.observed/libcomposition_adjustment.so'
'c++/BUILD/lib/libgeneral.so' -> 'c++/BUILD/lib.observed/libgeneral.so'
'c++/BUILD/lib/libgenome_collection.so' -> 'c++/BUILD/lib.observed/libgenome_collection.so'
'c++/BUILD/lib/libid1.so' -> 'c++/BUILD/lib.observed/libid1.so'
'c++/BUILD/lib/libid2.so' -> 'c++/BUILD/lib.observed/libid2.so'
'c++/BUILD/lib/libncbi_xreader_cache.so' -> 'c++/BUILD/lib.observed/libncbi_xreader_cache.so'
'c++/BUILD/lib/libncbi_xreader_id1.so' -> 'c++/BUILD/lib.observed/libncbi_xreader_id1.so'
'c++/BUILD/lib/libpub.so' -> 'c++/BUILD/lib.observed/libpub.so'
'c++/BUILD/lib/libseqcode.so' -> 'c++/BUILD/lib.observed/libseqcode.so'
'c++/BUILD/lib/libseqedit.so' -> 'c++/BUILD/lib.observed/libseqedit.so'
'c++/BUILD/lib/libseqsplit.so' -> 'c++/BUILD/lib.observed/libseqsplit.so'
'c++/BUILD/lib/libsequtil.so' -> 'c++/BUILD/lib.observed/libsequtil.so'
'c++/BUILD/lib/libsubmit.so' -> 'c++/BUILD/lib.observed/libsubmit.so'
'c++/BUILD/lib/libtables.so' -> 'c++/BUILD/lib.observed/libtables.so'
'c++/BUILD/lib/libtaxon1.so' -> 'c++/BUILD/lib.observed/libtaxon1.so'
'c++/BUILD/lib/libxalnmgr.so' -> 'c++/BUILD/lib.observed/libxalnmgr.so'
'c++/BUILD/lib/libxcgi.so' -> 'c++/BUILD/lib.observed/libxcgi.so'
'c++/BUILD/lib/libxcompress.so' -> 'c++/BUILD/lib.observed/libxcompress.so'
'c++/BUILD/lib/libxformat.so' -> 'c++/BUILD/lib.observed/libxformat.so'
'c++/BUILD/lib/libxhtml.so' -> 'c++/BUILD/lib.observed/libxhtml.so'
'c++/BUILD/lib/libxlogging.so' -> 'c++/BUILD/lib.observed/libxlogging.so'
'c++/BUILD/lib/libxnetblastcli.so' -> 'c++/BUILD/lib.observed/libxnetblastcli.so'
------------------------------------------------------------
'c++/BUILD/lib/libgbseq.so' -> 'c++/BUILD/lib.observed/libgbseq.so'
'c++/BUILD/lib/libmedline.so' -> 'c++/BUILD/lib.observed/libmedline.so'
'c++/BUILD/lib/libmla.so' -> 'c++/BUILD/lib.observed/libmla.so'
'c++/BUILD/lib/libmlacli.so' -> 'c++/BUILD/lib.observed/libmlacli.so'
'c++/BUILD/lib/libvalid.so' -> 'c++/BUILD/lib.observed/libvalid.so'
'c++/BUILD/lib/libxcleanup.so' -> 'c++/BUILD/lib.observed/libxcleanup.so'
------------------------------------------------------------
'c++/BUILD/lib/libmedlars.so' -> 'c++/BUILD/lib.observed/libmedlars.so'
'c++/BUILD/lib/libpubmed.so' -> 'c++/BUILD/lib.observed/libpubmed.so'
'c++/BUILD/lib/libtaxon3.so' -> 'c++/BUILD/lib.observed/libtaxon3.so'
'c++/BUILD/lib/libxobjedit.so' -> 'c++/BUILD/lib.observed/libxobjedit.so'
'c++/BUILD/lib/libxregexp.so' -> 'c++/BUILD/lib.observed/libxregexp.so'
------------------------------------------------------------
'c++/BUILD/lib/libeutils.so' -> 'c++/BUILD/lib.observed/libeutils.so'
------------------------------------------------------------
'c++/BUILD/lib/libegquery.so' -> 'c++/BUILD/lib.observed/libegquery.so'
'c++/BUILD/lib/libehistory.so' -> 'c++/BUILD/lib.observed/libehistory.so'
'c++/BUILD/lib/libeinfo.so' -> 'c++/BUILD/lib.observed/libeinfo.so'
'c++/BUILD/lib/libelink.so' -> 'c++/BUILD/lib.observed/libelink.so'
'c++/BUILD/lib/libepost.so' -> 'c++/BUILD/lib.observed/libepost.so'
'c++/BUILD/lib/libesearch.so' -> 'c++/BUILD/lib.observed/libesearch.so'
'c++/BUILD/lib/libespell.so' -> 'c++/BUILD/lib.observed/libespell.so'
'c++/BUILD/lib/libesummary.so' -> 'c++/BUILD/lib.observed/libesummary.so'
'c++/BUILD/lib/libuilist.so' -> 'c++/BUILD/lib.observed/libuilist.so'
------------------------------------------------------------
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a -O--sourcedirectory=c\+\+
dh_installchangelogs -a -O--sourcedirectory=c\+\+
dh_installexamples -a -O--sourcedirectory=c\+\+
dh_installman -a -O--sourcedirectory=c\+\+
dh_installsystemduser -a -O--sourcedirectory=c\+\+
dh_perl -a -O--sourcedirectory=c\+\+
dh_link -a -O--sourcedirectory=c\+\+
dh_strip_nondeterminism -a -O--sourcedirectory=c\+\+
dh_compress -a -O--sourcedirectory=c\+\+
dh_fixperms -a -O--sourcedirectory=c\+\+
dh_missing -a -O--sourcedirectory=c\+\+
dh_dwz -a -O--sourcedirectory=c\+\+
dh_strip -a -O--sourcedirectory=c\+\+
dh_makeshlibs -a -O--sourcedirectory=c\+\+
dh_shlibdeps -a -O--sourcedirectory=c\+\+
dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/makembindex contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/tblastn contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/blastdb_convert contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/psiblast contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/seqdb_perf contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/blastdb_path contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/blastx contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/makeblastdb contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/dustmasker contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/gene_info_reader contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/convert2blastmask contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/rpsblast+ contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/tblastx contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/blastp contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/windowmasker contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/blastdbcmd contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/rpstblastn contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/makeprofiledb contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/blastdb_aliastool contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/segmasker contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/seedtop+ contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/blastdbcp contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/blastn contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/blast_formatter contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/blast_report contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/deltablast contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/ncbi-blast+/usr/bin/blastdbcheck contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dh_installdeb -a -O--sourcedirectory=c\+\+
dh_gencontrol -a -O--sourcedirectory=c\+\+
dh_md5sums -a -O--sourcedirectory=c\+\+
dh_builddeb -a -O--sourcedirectory=c\+\+
dpkg-deb: building package 'ncbi-blast+-dbgsym' in '../ncbi-blast+-dbgsym_2.12.0+ds-3+b2_armhf.deb'.
dpkg-deb: building package 'ncbi-blast+' in '../ncbi-blast+_2.12.0+ds-3+b2_armhf.deb'.
dpkg-genbuildinfo --build=any -O../ncbi-blast+_2.12.0+ds-3+b2_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian pi4 based autobuilder <root@raspbian.org> -O../ncbi-blast+_2.12.0+ds-3+b2_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-source: info: using options from ncbi-blast+-2.12.0+ds/debian/source/options: --extend-diff-ignore=(^|/)config.(sub|guess)$
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2022-10-29T11:43:47Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
ncbi-blast+_2.12.0+ds-3+b2_armhf.changes:
-----------------------------------------
Format: 1.8
Date: Sat, 29 Oct 2022 03:22:11 +0000
Source: ncbi-blast+ (2.12.0+ds-3)
Binary: ncbi-blast+ ncbi-blast+-dbgsym
Binary-Only: yes
Architecture: armhf
Version: 2.12.0+ds-3+b2
Distribution: bookworm-staging
Urgency: low
Maintainer: Raspbian pi4 based autobuilder <root@raspbian.org>
Changed-By: Raspbian pi4 based autobuilder <root@raspbian.org>
Description:
ncbi-blast+ - next generation suite of BLAST sequence search tools
Changes:
ncbi-blast+ (2.12.0+ds-3+b2) bookworm-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
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Files:
8d2b64a44e9a5fd2b3ae8f703ee91e10 196439788 debug optional ncbi-blast+-dbgsym_2.12.0+ds-3+b2_armhf.deb
014ed3663c5aaeca218216ddd9fa478d 6948 science optional ncbi-blast+_2.12.0+ds-3+b2_armhf.buildinfo
392ae35d87ecef6c1f8b6ed30be87ed6 9948476 science optional ncbi-blast+_2.12.0+ds-3+b2_armhf.deb
+------------------------------------------------------------------------------+
| Buildinfo |
+------------------------------------------------------------------------------+
Format: 1.0
Source: ncbi-blast+ (2.12.0+ds-3)
Binary: ncbi-blast+ ncbi-blast+-dbgsym
Architecture: armhf
Version: 2.12.0+ds-3+b2
Binary-Only-Changes:
ncbi-blast+ (2.12.0+ds-3+b2) bookworm-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
.
-- Raspbian pi4 based autobuilder <root@raspbian.org> Sat, 29 Oct 2022 03:22:11 +0000
Checksums-Md5:
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Checksums-Sha256:
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e495b4d8b77802108d473bd8670b64bc850fc114b7acc91573377cda3e967151 9948476 ncbi-blast+_2.12.0+ds-3+b2_armhf.deb
Build-Origin: Raspbian
Build-Architecture: armhf
Build-Date: Sat, 29 Oct 2022 11:43:37 +0000
Build-Path: /<<PKGBUILDDIR>>
Installed-Build-Depends:
2to3 (= 3.10.6-1),
autoconf (= 2.71-2),
automake (= 1:1.16.5-1.3),
autopoint (= 0.21-9),
autotools-dev (= 20220109.1),
base-files (= 12.3+rpi1),
base-passwd (= 3.6.1),
bash (= 5.2~rc2-2),
binutils (= 2.39-6+rpi1),
binutils-arm-linux-gnueabihf (= 2.39-6+rpi1),
binutils-common (= 2.39-6+rpi1),
bsdextrautils (= 2.38.1-1.1),
bsdutils (= 1:2.38.1-1.1),
build-essential (= 12.9),
bzip2 (= 1.0.8-5+b2),
coreutils (= 9.1-1),
cpp (= 4:12.2.0-1+rpi1),
cpp-12 (= 12.2.0-3+rpi1),
dash (= 0.5.11+git20210903+057cd650a4ed-9),
debconf (= 1.5.79),
debhelper (= 13.10),
debianutils (= 5.7-0.3),
dh-autoreconf (= 20),
dh-strip-nondeterminism (= 1.13.0-1),
diffutils (= 1:3.8-1),
dpkg (= 1.21.9+rpi1),
dpkg-dev (= 1.21.9+rpi1),
dwz (= 0.14+20220924-2),
file (= 1:5.41-4),
findutils (= 4.9.0-3),
g++ (= 4:12.2.0-1+rpi1),
g++-12 (= 12.2.0-3+rpi1),
gcc (= 4:12.2.0-1+rpi1),
gcc-12 (= 12.2.0-3+rpi1),
gcc-12-base (= 12.2.0-3+rpi1),
gettext (= 0.21-9),
gettext-base (= 0.21-9),
grep (= 3.7-1),
groff-base (= 1.22.4-8),
gzip (= 1.12-1),
hostname (= 3.23),
init-system-helpers (= 1.64),
intltool-debian (= 0.35.0+20060710.6),
libacl1 (= 2.3.1-1),
libarchive-zip-perl (= 1.68-1),
libasan8 (= 12.2.0-3+rpi1),
libatomic1 (= 12.2.0-3+rpi1),
libattr1 (= 1:2.5.1-1),
libaudit-common (= 1:3.0.7-1.1),
libaudit1 (= 1:3.0.7-1.1),
libbinutils (= 2.39-6+rpi1),
libblkid1 (= 2.38.1-1.1),
libboost-test-dev (= 1.74.0.3+b4),
libboost-test1.74-dev (= 1.74.0-17),
libboost-test1.74.0 (= 1.74.0-17),
libboost1.74-dev (= 1.74.0-17),
libbz2-1.0 (= 1.0.8-5+b2),
libbz2-dev (= 1.0.8-5+b2),
libc-bin (= 2.35-2+rpi1),
libc-dev-bin (= 2.35-2+rpi1),
libc6 (= 2.35-2+rpi1),
libc6-dev (= 2.35-2+rpi1),
libcap-ng0 (= 0.8.3-1),
libcap2 (= 1:2.44-1),
libcc1-0 (= 12.2.0-3+rpi1),
libcom-err2 (= 1.46.6~rc1-1),
libcrypt-dev (= 1:4.4.28-2),
libcrypt1 (= 1:4.4.28-2),
libctf-nobfd0 (= 2.39-6+rpi1),
libctf0 (= 2.39-6+rpi1),
libdb5.3 (= 5.3.28+dfsg1-0.10),
libdebconfclient0 (= 0.264),
libdebhelper-perl (= 13.10),
libdpkg-perl (= 1.21.9+rpi1),
libelf1 (= 0.187-2+rpi2),
libevent-2.1-7 (= 2.1.12-stable-5+b1),
libexpat1 (= 2.4.9-1),
libffi8 (= 3.4.2-4),
libfile-stripnondeterminism-perl (= 1.13.0-1),
libgcc-12-dev (= 12.2.0-3+rpi1),
libgcc-s1 (= 12.2.0-3+rpi1),
libgcrypt20 (= 1.10.1-2+b2),
libgdbm-compat4 (= 1.23-3),
libgdbm6 (= 1.23-3),
libgmp-dev (= 2:6.2.1+dfsg1-1.1),
libgmp10 (= 2:6.2.1+dfsg1-1.1),
libgmpxx4ldbl (= 2:6.2.1+dfsg1-1.1),
libgnutls-dane0 (= 3.7.8-2),
libgnutls-openssl27 (= 3.7.8-2),
libgnutls28-dev (= 3.7.8-2),
libgnutls30 (= 3.7.8-2),
libgnutlsxx30 (= 3.7.8-2),
libgomp1 (= 12.2.0-3+rpi1),
libgpg-error0 (= 1.45-2),
libgssapi-krb5-2 (= 1.20-1),
libhogweed6 (= 3.8.1-2),
libicu71 (= 71.1-3),
libidn2-0 (= 2.3.3-1),
libidn2-dev (= 2.3.3-1),
libisl23 (= 0.25-1),
libk5crypto3 (= 1.20-1),
libkeyutils1 (= 1.6.3-1),
libkrb5-3 (= 1.20-1),
libkrb5support0 (= 1.20-1),
liblmdb-dev (= 0.9.24-1),
liblmdb0 (= 0.9.24-1),
liblz4-1 (= 1.9.4-1+rpi1),
liblzma5 (= 5.2.5-2.1),
libmagic-mgc (= 1:5.41-4),
libmagic1 (= 1:5.41-4),
libmbedcrypto7 (= 2.28.1-1),
libmbedtls-dev (= 2.28.1-1),
libmbedtls14 (= 2.28.1-1),
libmbedx509-1 (= 2.28.1-1),
libmount1 (= 2.38.1-1.1),
libmpc3 (= 1.2.1-2),
libmpdec3 (= 2.5.1-2+rpi1),
libmpfr6 (= 4.1.0-3),
libncurses6 (= 6.3+20220423-2),
libncursesw6 (= 6.3+20220423-2),
libnettle8 (= 3.8.1-2),
libnsl-dev (= 1.3.0-2),
libnsl2 (= 1.3.0-2),
libp11-kit-dev (= 0.24.1-1),
libp11-kit0 (= 0.24.1-1),
libpam-modules (= 1.5.2-5),
libpam-modules-bin (= 1.5.2-5),
libpam-runtime (= 1.5.2-5),
libpam0g (= 1.5.2-5),
libpcre16-3 (= 2:8.39-14),
libpcre2-8-0 (= 10.40-1+b2),
libpcre3 (= 2:8.39-14),
libpcre3-dev (= 2:8.39-14),
libpcre32-3 (= 2:8.39-14),
libpcrecpp0v5 (= 2:8.39-14),
libperl5.34 (= 5.34.0-5),
libpipeline1 (= 1.5.6-3),
libprocps8 (= 2:3.3.17-7.1),
libpython3-stdlib (= 3.10.6-1),
libpython3.10-minimal (= 3.10.7-2),
libpython3.10-stdlib (= 3.10.7-2),
libreadline8 (= 8.2-1),
libseccomp2 (= 2.5.4-1+rpi1),
libselinux1 (= 3.4-1),
libsmartcols1 (= 2.38.1-1.1),
libsqlite3-0 (= 3.39.4-1),
libssl3 (= 3.0.5-4),
libstdc++-12-dev (= 12.2.0-3+rpi1),
libstdc++6 (= 12.2.0-3+rpi1),
libsub-override-perl (= 0.09-4),
libsystemd0 (= 251.5-1+rpi1),
libtasn1-6 (= 4.19.0-2),
libtasn1-6-dev (= 4.19.0-2),
libtinfo6 (= 6.3+20220423-2),
libtirpc-common (= 1.3.3+ds-1),
libtirpc-dev (= 1.3.3+ds-1),
libtirpc3 (= 1.3.3+ds-1),
libtool (= 2.4.7-4),
libubsan1 (= 12.2.0-3+rpi1),
libuchardet0 (= 0.0.7-1),
libudev1 (= 251.5-1+rpi1),
libunbound8 (= 1.17.0-1),
libunistring2 (= 1.0-2),
libuuid1 (= 2.38.1-1.1),
libxml2 (= 2.9.14+dfsg-1),
libzstd1 (= 1.5.2+dfsg-1),
linux-libc-dev (= 5.19.6-1+rpi1),
login (= 1:4.12.3+dfsg1-1),
m4 (= 1.4.19-1),
make (= 4.3-4.1),
man-db (= 2.11.0-1),
mawk (= 1.3.4.20200120-3.1),
media-types (= 8.0.0),
ncurses-base (= 6.3+20220423-2),
ncurses-bin (= 6.3+20220423-2),
nettle-dev (= 3.8.1-2),
patch (= 2.7.6-7),
perl (= 5.34.0-5),
perl-base (= 5.34.0-5),
perl-modules-5.34 (= 5.34.0-5),
po-debconf (= 1.0.21+nmu1),
procps (= 2:3.3.17-7.1),
python3 (= 3.10.6-1),
python3-lib2to3 (= 3.10.7-1),
python3-minimal (= 3.10.6-1),
python3.10 (= 3.10.7-2),
python3.10-minimal (= 3.10.7-2),
readline-common (= 8.2-1),
rpcsvc-proto (= 1.4.2-4),
sed (= 4.8-1),
sensible-utils (= 0.0.17),
sgml-base (= 1.31),
sysvinit-utils (= 3.05-6),
tar (= 1.34+dfsg-1),
time (= 1.9-0.2),
util-linux (= 2.38.1-1.1),
util-linux-extra (= 2.38.1-1.1),
xz-utils (= 5.2.5-2.1),
zlib1g (= 1:1.2.11.dfsg-4.1),
zlib1g-dev (= 1:1.2.11.dfsg-4.1)
Environment:
DEB_BUILD_OPTIONS="parallel=4"
LANG="en_GB.UTF-8"
LC_ALL="C.UTF-8"
SOURCE_DATE_EPOCH="1667013731"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
ncbi-blast+-dbgsym_2.12.0+ds-3+b2_armhf.deb
-------------------------------------------
new Debian package, version 2.0.
size 196439788 bytes: control archive=5244 bytes.
4722 bytes, 12 lines control
11327 bytes, 107 lines md5sums
Package: ncbi-blast+-dbgsym
Source: ncbi-blast+ (2.12.0+ds-3)
Version: 2.12.0+ds-3+b2
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 202880
Depends: ncbi-blast+ (= 2.12.0+ds-3+b2)
Section: debug
Priority: optional
Description: debug symbols for ncbi-blast+
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ncbi-blast+_2.12.0+ds-3+b2_armhf.deb
------------------------------------
new Debian package, version 2.0.
size 9948476 bytes: control archive=4040 bytes.
1328 bytes, 25 lines control
7798 bytes, 118 lines md5sums
Package: ncbi-blast+
Source: ncbi-blast+ (2.12.0+ds-3)
Version: 2.12.0+ds-3+b2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 44791
Depends: ncbi-data, python3, perl:any, libbz2-1.0, libc6 (>= 2.34), libgcc-s1 (>= 3.5), libgomp1 (>= 6), liblmdb0 (>= 0.9.7), libmbedcrypto7 (>= 2.28.0), libmbedtls14 (>= 2.28.0), libpcre3, libstdc++6 (>= 12), zlib1g (>= 1:1.2.11.dfsg)
Enhances: t-coffee
Section: science
Priority: optional
Multi-Arch: foreign
Homepage: https://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/
Description: next generation suite of BLAST sequence search tools
The Basic Local Alignment Search Tool (BLAST) is the most widely
used sequence similarity tool. There are versions of BLAST that
compare protein queries to protein databases, nucleotide queries
to nucleotide databases, as well as versions that translate nucleotide
queries or databases in all six frames and compare to protein databases
or queries.
PSI-BLAST produces a position-specific-scoring-matrix (PSSM) starting
with a protein query, and then uses that PSSM to perform further searches.
It is also possible to compare a protein or nucleotide query to a
database of PSSM’s.
The NCBI supports a BLAST web page at blast.ncbi.nlm.nih.gov as well as
a network service.
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+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build Type: any
Build-Space: 3596620
Build-Time: 30095
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 516
Job: ncbi-blast+_2.12.0+ds-3
Machine Architecture: armhf
Package: ncbi-blast+
Package-Time: 30674
Source-Version: 2.12.0+ds-3
Space: 3596620
Status: successful
Version: 2.12.0+ds-3+b2
--------------------------------------------------------------------------------
Finished at 2022-10-29T11:43:47Z
Build needed 08:31:14, 3596620k disk space