nanolyse →
1.2.0-4+b4 →
armhf → 2023-02-02 12:06:04
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-04
+==============================================================================+
| nanolyse 1.2.0-4+b4 (armhf) Thu, 02 Feb 2023 11:55:47 +0000 |
+==============================================================================+
Package: nanolyse
Version: 1.2.0-4+b4
Source Version: 1.2.0-4
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-a159acb6-d3e4-4d29-8cdf-bb429c11e17a' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [13.6 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [14.4 MB]
Fetched 28.1 MB in 29s (971 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http://172.17.4.1/private/dists/bookworm-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'nanolyse' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/nanolyse.git
Please use:
git clone https://salsa.debian.org/med-team/nanolyse.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 40.8 kB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main nanolyse 1.2.0-4 (dsc) [1999 B]
Get:2 http://172.17.4.1/private bookworm-staging/main nanolyse 1.2.0-4 (tar) [34.0 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main nanolyse 1.2.0-4 (diff) [4788 B]
Fetched 40.8 kB in 0s (303 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/nanolyse-bqQ01F/nanolyse-1.2.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/nanolyse-bqQ01F' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-aZUnrq/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-aZUnrq/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-aZUnrq/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-aZUnrq/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-aZUnrq/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-aZUnrq/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-aZUnrq/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-aZUnrq/apt_archive ./ Packages [431 B]
Fetched 2107 B in 1s (2808 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap netbase
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 90 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-aZUnrq/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (22.6 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12958 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools
Filtered Build-Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools
dpkg-deb: building package 'sbuild-build-depends-nanolyse-dummy' in '/<<BUILDDIR>>/resolver-aZUnrq/apt_archive/sbuild-build-depends-nanolyse-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-nanolyse-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-aZUnrq/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-aZUnrq/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-aZUnrq/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-aZUnrq/apt_archive ./ Sources [511 B]
Get:5 copy:/<<BUILDDIR>>/resolver-aZUnrq/apt_archive ./ Packages [591 B]
Fetched 2435 B in 1s (3175 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install nanolyse build dependencies (apt-based resolver)
--------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext
gettext-base groff-base intltool-debian libarchive-zip-perl
libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl
libicu72 libmagic-mgc libmagic1 libmpdec3 libpipeline1 libpython3-stdlib
libpython3.11-minimal libpython3.11-stdlib libsub-override-perl libtool
libuchardet0 libxml2 m4 man-db media-types po-debconf python3
python3-distutils python3-lib2to3 python3-minimal python3-pkg-resources
python3-setuptools python3.11 python3.11-minimal
Suggested packages:
autoconf-archive gnu-standards autoconf-doc dh-make flit python3-build
python3-tomli python3-installer gettext-doc libasprintf-dev libgettextpo-dev
groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less
www-browser libmail-box-perl python3-doc python3-tk python3-venv
python-setuptools-doc python3.11-venv python3.11-doc binfmt-support
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext
gettext-base groff-base intltool-debian libarchive-zip-perl
libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl
libicu72 libmagic-mgc libmagic1 libmpdec3 libpipeline1 libpython3-stdlib
libpython3.11-minimal libpython3.11-stdlib libsub-override-perl libtool
libuchardet0 libxml2 m4 man-db media-types po-debconf python3
python3-distutils python3-lib2to3 python3-minimal python3-pkg-resources
python3-setuptools python3.11 python3.11-minimal
sbuild-build-depends-nanolyse-dummy
0 upgraded, 45 newly installed, 0 to remove and 90 not upgraded.
Need to get 23.9 MB of archives.
After this operation, 99.5 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-aZUnrq/apt_archive ./ sbuild-build-depends-nanolyse-dummy 0.invalid.0 [880 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf libpython3.11-minimal armhf 3.11.1-2 [796 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf libexpat1 armhf 2.5.0-1 [77.2 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf python3.11-minimal armhf 3.11.1-2 [1678 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf python3-minimal armhf 3.11.1-2 [25.7 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf media-types all 8.0.0 [33.4 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf libmpdec3 armhf 2.5.1-2+rpi1 [73.5 kB]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf libpython3.11-stdlib armhf 3.11.1-2 [1622 kB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf python3.11 armhf 3.11.1-2 [567 kB]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf libpython3-stdlib armhf 3.11.1-2 [8704 B]
Get:11 http://172.17.4.1/private bookworm-staging/main armhf python3 armhf 3.11.1-2 [25.4 kB]
Get:12 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-9 [774 kB]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.38.1-4 [78.8 kB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.7-1 [33.4 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.11.2-1 [1342 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.44-3 [305 kB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.44-3 [95.3 kB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.44-3 [41.5 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-10 [156 kB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.19-2 [256 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-3 [332 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-10 [495 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.11.4 [81.2 kB]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.7-5 [517 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-4 [9304 B]
Get:31 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.187-2+rpi2 [177 kB]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.15-1 [92.4 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf libicu72 armhf 72.1-3 [9009 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.14+dfsg-1.1+b1 [571 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-10 [1203 kB]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.11.4 [942 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf python3-lib2to3 all 3.10.8-1 [77.3 kB]
Get:42 http://172.17.4.1/private bookworm-staging/main armhf python3-distutils all 3.10.8-1 [139 kB]
Get:43 http://172.17.4.1/private bookworm-staging/main armhf dh-python all 5.20220819+rpi1 [114 kB]
Get:44 http://172.17.4.1/private bookworm-staging/main armhf python3-pkg-resources all 65.6.3-1 [278 kB]
Get:45 http://172.17.4.1/private bookworm-staging/main armhf python3-setuptools all 65.6.3-1 [520 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up libarchive-zip-perl (1.68-1) ...
Setting up libdebhelper-perl (13.11.4) ...
Setting up libmagic1:armhf (1:5.44-3) ...
Setting up gettext-base (0.21-10) ...
Setting up m4 (1.4.19-2) ...
Setting up file (1:5.44-3) ...
Setting up autotools-dev (20220109.1) ...
Setting up autopoint (0.21-10) ...
Setting up autoconf (2.71-3) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libmpdec3:armhf (2.5.1-2+rpi1) ...
Setting up libsub-override-perl (0.09-4) ...
Setting up libelf1:armhf (0.187-2+rpi2) ...
Setting up libxml2:armhf (2.9.14+dfsg-1.1+b1) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.13.1-1) ...
Setting up gettext (0.21-10) ...
Setting up libtool (2.4.7-5) ...
Setting up libpython3.11-stdlib:armhf (3.11.1-2) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up dh-strip-nondeterminism (1.13.1-1) ...
Setting up dwz (0.15-1) ...
Setting up groff-base (1.22.4-9) ...
Setting up libpython3-stdlib:armhf (3.11.1-2) ...
Setting up python3.11 (3.11.1-2) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up python3 (3.11.1-2) ...
Setting up man-db (2.11.2-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up python3-lib2to3 (3.10.8-1) ...
Setting up python3-pkg-resources (65.6.3-1) ...
Setting up python3-distutils (3.10.8-1) ...
Setting up dh-python (5.20220819+rpi1) ...
Setting up python3-setuptools (65.6.3-1) ...
Setting up debhelper (13.11.4) ...
Setting up sbuild-build-depends-nanolyse-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.36-6+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.4-armmp armhf (armv7l)
Toolchain package versions: binutils_2.39.50.20221208-5+rpi1 dpkg-dev_1.21.9+rpi1 g++-12_12.2.0-10+rpi1 gcc-12_12.2.0-10+rpi1 libc6-dev_2.36-6+rpi1 libstdc++-12-dev_12.2.0-10+rpi1 libstdc++6_12.2.0-10+rpi1 linux-libc-dev_6.0.12-1+rpi1
Package versions: adduser_3.129 apt_2.5.4 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-10 autotools-dev_20220109.1 base-files_12.3+rpi1 base-passwd_3.6.1 bash_5.2-2 binutils_2.39.50.20221208-5+rpi1 binutils-arm-linux-gnueabihf_2.39.50.20221208-5+rpi1 binutils-common_2.39.50.20221208-5+rpi1 bsdextrautils_2.38.1-4 bsdutils_1:2.38.1-4 build-essential_12.9 bzip2_1.0.8-5+b2 coreutils_9.1-1 cpp_4:12.2.0-1+rpi1 cpp-12_12.2.0-10+rpi1 dash_0.5.11+git20210903+057cd650a4ed-9 debconf_1.5.80 debhelper_13.11.4 debianutils_5.7-0.4 dh-autoreconf_20 dh-python_5.20220819+rpi1 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.8-1 dirmngr_2.2.40-1 dpkg_1.21.9+rpi1 dpkg-dev_1.21.9+rpi1 dwz_0.15-1 e2fsprogs_1.46.6~rc1-1 fakeroot_1.29-1 file_1:5.44-3 findutils_4.9.0-3 g++_4:12.2.0-1+rpi1 g++-12_12.2.0-10+rpi1 gcc_4:12.2.0-1+rpi1 gcc-12_12.2.0-10+rpi1 gcc-12-base_12.2.0-10+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-10 gettext-base_0.21-10 gnupg_2.2.40-1 gnupg-l10n_2.2.40-1 gnupg-utils_2.2.40-1 gpg_2.2.40-1 gpg-agent_2.2.40-1 gpg-wks-client_2.2.40-1 gpg-wks-server_2.2.40-1 gpgconf_2.2.40-1 gpgsm_2.2.40-1 gpgv_2.2.40-1 grep_3.8-3 groff-base_1.22.4-9 gzip_1.12-1 hostname_3.23 init-system-helpers_1.64 intltool-debian_0.35.0+20060710.6 iputils-ping_3:20221126-1 krb5-locales_1.20.1-1 libacl1_2.3.1-2 libapt-pkg6.0_2.5.4 libarchive-zip-perl_1.68-1 libasan8_12.2.0-10+rpi1 libassuan0_2.5.5-5 libatomic1_12.2.0-10+rpi1 libattr1_1:2.5.1-3 libaudit-common_1:3.0.7-1.1 libaudit1_1:3.0.7-1.1 libbinutils_2.39.50.20221208-5+rpi1 libblkid1_2.38.1-4 libbz2-1.0_1.0.8-5+b2 libc-bin_2.36-6+rpi1 libc-dev-bin_2.36-6+rpi1 libc6_2.36-6+rpi1 libc6-dev_2.36-6+rpi1 libcap-ng0_0.8.3-1 libcap2_1:2.44-1 libcap2-bin_1:2.44-1 libcc1-0_12.2.0-10+rpi1 libcom-err2_1.46.6~rc1-1 libcrypt-dev_1:4.4.33-1 libcrypt1_1:4.4.33-1 libctf-nobfd0_2.39.50.20221208-5+rpi1 libctf0_2.39.50.20221208-5+rpi1 libdb5.3_5.3.28+dfsg1-0.10 libdebconfclient0_0.265 libdebhelper-perl_13.11.4 libdpkg-perl_1.21.9+rpi1 libelf1_0.187-2+rpi2 libexpat1_2.5.0-1 libext2fs2_1.46.6~rc1-1 libfakeroot_1.29-1 libffi8_3.4.4-1 libfile-stripnondeterminism-perl_1.13.1-1 libgcc-12-dev_12.2.0-10+rpi1 libgcc-s1_12.2.0-10+rpi1 libgcrypt20_1.10.1-3 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgmp10_2:6.2.1+dfsg1-1.1 libgnutls30_3.7.8-4 libgomp1_12.2.0-10+rpi1 libgpg-error0_1.46-1 libgssapi-krb5-2_1.20.1-1 libhogweed6_3.8.1-2 libicu72_72.1-3 libidn2-0_2.3.3-1 libisl23_0.25-1 libjansson4_2.14-2 libk5crypto3_1.20.1-1 libkeyutils1_1.6.3-1 libkrb5-3_1.20.1-1 libkrb5support0_1.20.1-1 libksba8_1.6.2-4 libldap-2.5-0_2.5.13+dfsg-2+rpi1+b1 liblz4-1_1.9.4-1+rpi1 liblzma5_5.4.0-0.1 libmagic-mgc_1:5.44-3 libmagic1_1:5.44-3 libmount1_2.38.1-4 libmpc3_1.2.1-2 libmpdec3_2.5.1-2+rpi1 libmpfr6_4.1.0-3 libncursesw6_6.3+20220423-2 libnettle8_3.8.1-2 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.1-1 libpam-cap_1:2.44-1 libpam-modules_1.5.2-5 libpam-modules-bin_1.5.2-5 libpam-runtime_1.5.2-5 libpam0g_1.5.2-5 libpcre2-8-0_10.40-3 libpcre3_2:8.39-14 libperl5.36_5.36.0-6 libpipeline1_1.5.7-1 libpython3-stdlib_3.11.1-2 libpython3.11-minimal_3.11.1-2 libpython3.11-stdlib_3.11.1-2 libreadline8_8.2-1.2 libsasl2-2_2.1.28+dfsg-10 libsasl2-modules-db_2.1.28+dfsg-10 libseccomp2_2.5.4-1+rpi1 libselinux1_3.4-1 libsemanage-common_3.4-1 libsemanage2_3.4-1 libsepol1_3.1-1 libsepol2_3.4-2 libsmartcols1_2.38.1-4 libsqlite3-0_3.40.0-1 libss2_1.46.6~rc1-1 libssl1.1_1.1.1o-1 libssl3_3.0.7-1 libstdc++-12-dev_12.2.0-10+rpi1 libstdc++6_12.2.0-10+rpi1 libsub-override-perl_0.09-4 libsystemd0_252.2-1+rpi1 libtasn1-6_4.19.0-2 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-5 libubsan1_12.2.0-10+rpi1 libuchardet0_0.0.7-1 libudev1_252.2-1+rpi1 libunistring2_1.0-2 libuuid1_2.38.1-4 libxml2_2.9.14+dfsg-1.1+b1 libxxhash0_0.8.1-1 libzstd1_1.5.2+dfsg-1 linux-libc-dev_6.0.12-1+rpi1 login_1:4.13+dfsg1-1 logsave_1.46.6~rc1-1 lsb-base_11.4+rpi1 m4_1.4.19-2 make_4.3-4.1 man-db_2.11.2-1 mawk_1.3.4.20200120-3.1 media-types_8.0.0 mount_2.38.1-4 nano_7.1-1 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 netbase_6.4 passwd_1:4.13+dfsg1-1 patch_2.7.6-7 perl_5.36.0-6 perl-base_5.36.0-6 perl-modules-5.36_5.36.0-6 pinentry-curses_1.2.1-1 po-debconf_1.0.21+nmu1 python3_3.11.1-2 python3-distutils_3.10.8-1 python3-lib2to3_3.10.8-1 python3-minimal_3.11.1-2 python3-pkg-resources_65.6.3-1 python3-setuptools_65.6.3-1 python3.11_3.11.1-2 python3.11-minimal_3.11.1-2 raspbian-archive-keyring_20120528.2 readline-common_8.2-1.2 rpcsvc-proto_1.4.3-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-nanolyse-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sgml-base_1.31 sysvinit-utils_3.05-7 tar_1.34+dfsg-1 tzdata_2022f-1 util-linux_2.38.1-4 util-linux-extra_2.38.1-4 xz-utils_5.4.0-0.1 zlib1g_1:1.2.13.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.zNmQwYg_/trustedkeys.kbx': General error
gpgv: Signature made Thu Nov 24 12:15:17 2022 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify signature ./nanolyse_1.2.0-4.dsc
dpkg-source: info: extracting nanolyse in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking nanolyse_1.2.0.orig.tar.gz
dpkg-source: info: unpacking nanolyse_1.2.0-4.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying path_to_reference.patch
Check disc space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 1.2.0-4+b4
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-a159acb6-d3e4-4d29-8cdf-bb429c11e17a
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package nanolyse
dpkg-buildpackage: info: source version 1.2.0-4+b4
dpkg-buildpackage: info: source distribution bookworm-staging
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --with python3 --buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
I: pybuild base:240: python3.11 setup.py clean
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.11' does not exist -- can't clean it
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary-arch
dh binary-arch --with python3 --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:240: python3.11 setup.py config
running config
dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:240: /usr/bin/python3 setup.py build
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/nanolyse
copying nanolyse/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/nanolyse
copying nanolyse/version.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/nanolyse
copying nanolyse/NanoLyse.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/nanolyse
running egg_info
creating NanoLyse.egg-info
writing NanoLyse.egg-info/PKG-INFO
writing dependency_links to NanoLyse.egg-info/dependency_links.txt
writing entry points to NanoLyse.egg-info/entry_points.txt
writing requirements to NanoLyse.egg-info/requires.txt
writing top-level names to NanoLyse.egg-info/top_level.txt
writing manifest file 'NanoLyse.egg-info/SOURCES.txt'
reading manifest file 'NanoLyse.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE'
writing manifest file 'NanoLyse.egg-info/SOURCES.txt'
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/reference
copying reference/lambda.fasta.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/reference
dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:240: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build; python3.11 -m unittest discover -v
----------------------------------------------------------------------
Ran 0 tests in 0.000s
OK
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
dh_auto_install --destdir=debian/nanolyse/ -a -O--buildsystem=pybuild
I: pybuild base:240: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/nanolyse
running install
/usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
warnings.warn(
running build
running build_py
running egg_info
writing NanoLyse.egg-info/PKG-INFO
writing dependency_links to NanoLyse.egg-info/dependency_links.txt
writing entry points to NanoLyse.egg-info/entry_points.txt
writing requirements to NanoLyse.egg-info/requires.txt
writing top-level names to NanoLyse.egg-info/top_level.txt
reading manifest file 'NanoLyse.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE'
writing manifest file 'NanoLyse.egg-info/SOURCES.txt'
running install_lib
creating /<<PKGBUILDDIR>>/debian/nanolyse/usr
creating /<<PKGBUILDDIR>>/debian/nanolyse/usr/lib
creating /<<PKGBUILDDIR>>/debian/nanolyse/usr/lib/python3.11
creating /<<PKGBUILDDIR>>/debian/nanolyse/usr/lib/python3.11/dist-packages
creating /<<PKGBUILDDIR>>/debian/nanolyse/usr/lib/python3.11/dist-packages/nanolyse
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/nanolyse/__init__.py -> /<<PKGBUILDDIR>>/debian/nanolyse/usr/lib/python3.11/dist-packages/nanolyse
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/nanolyse/version.py -> /<<PKGBUILDDIR>>/debian/nanolyse/usr/lib/python3.11/dist-packages/nanolyse
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/nanolyse/NanoLyse.py -> /<<PKGBUILDDIR>>/debian/nanolyse/usr/lib/python3.11/dist-packages/nanolyse
creating /<<PKGBUILDDIR>>/debian/nanolyse/usr/lib/python3.11/dist-packages/nanolyse/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/nanolyse/__pycache__/__init__.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/nanolyse/usr/lib/python3.11/dist-packages/nanolyse/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/nanolyse/__pycache__/version.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/nanolyse/usr/lib/python3.11/dist-packages/nanolyse/__pycache__
creating /<<PKGBUILDDIR>>/debian/nanolyse/usr/lib/python3.11/dist-packages/reference
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/reference/lambda.fasta.gz -> /<<PKGBUILDDIR>>/debian/nanolyse/usr/lib/python3.11/dist-packages/reference
byte-compiling /<<PKGBUILDDIR>>/debian/nanolyse/usr/lib/python3.11/dist-packages/nanolyse/__init__.py to __init__.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/nanolyse/usr/lib/python3.11/dist-packages/nanolyse/version.py to version.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/nanolyse/usr/lib/python3.11/dist-packages/nanolyse/NanoLyse.py to NanoLyse.cpython-311.pyc
running install_egg_info
Copying NanoLyse.egg-info to /<<PKGBUILDDIR>>/debian/nanolyse/usr/lib/python3.11/dist-packages/NanoLyse-1.2.0.egg-info
Skipping SOURCES.txt
running install_scripts
Installing NanoLyse script to /<<PKGBUILDDIR>>/debian/nanolyse/usr/bin
debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install
rm -r debian/nanolyse/usr/lib/python3*/dist-packages/reference
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a -O--buildsystem=pybuild
dh_installchangelogs -a -O--buildsystem=pybuild
dh_installexamples -a -O--buildsystem=pybuild
dh_installman -a -O--buildsystem=pybuild
dh_python3 -a -O--buildsystem=pybuild
dh_installsystemduser -a -O--buildsystem=pybuild
dh_lintian -a -O--buildsystem=pybuild
dh_perl -a -O--buildsystem=pybuild
dh_link -a -O--buildsystem=pybuild
dh_strip_nondeterminism -a -O--buildsystem=pybuild
dh_compress -a -O--buildsystem=pybuild
dh_fixperms -a -O--buildsystem=pybuild
dh_missing -a -O--buildsystem=pybuild
dh_dwz -a -O--buildsystem=pybuild
dh_strip -a -O--buildsystem=pybuild
dh_makeshlibs -a -O--buildsystem=pybuild
dh_shlibdeps -a -O--buildsystem=pybuild
dh_installdeb -a -O--buildsystem=pybuild
dh_gencontrol -a -O--buildsystem=pybuild
dh_md5sums -a -O--buildsystem=pybuild
dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'nanolyse' in '../nanolyse_1.2.0-4+b4_armhf.deb'.
dpkg-genbuildinfo --build=any -O../nanolyse_1.2.0-4+b4_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> -O../nanolyse_1.2.0-4+b4_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2023-02-02T12:05:59Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
nanolyse_1.2.0-4+b4_armhf.changes:
----------------------------------
Format: 1.8
Date: Thu, 24 Nov 2022 13:05:28 +0100
Source: nanolyse (1.2.0-4)
Binary: nanolyse
Binary-Only: yes
Architecture: armhf
Version: 1.2.0-4+b4
Distribution: bookworm-staging
Urgency: low
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Raspbian wandboard test autobuilder <root@raspbian.org>
Description:
nanolyse - remove lambda phage reads from a fastq file
Changes:
nanolyse (1.2.0-4+b4) bookworm-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
Checksums-Sha1:
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a053258490a9683971d54a2c1eb557fa1e3c3c95 25612 nanolyse_1.2.0-4+b4_armhf.deb
Checksums-Sha256:
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2d970ed6388ee062ddf43713a13ddb747bebb2418d1674213fce153d355a02b0 25612 nanolyse_1.2.0-4+b4_armhf.deb
Files:
fc0c13cfe6ef73e9688cf8d697194239 5591 science optional nanolyse_1.2.0-4+b4_armhf.buildinfo
97da09ffe132121b7a9e4b2054f53277 25612 science optional nanolyse_1.2.0-4+b4_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
nanolyse_1.2.0-4+b4_armhf.deb
-----------------------------
new Debian package, version 2.0.
size 25612 bytes: control archive=1716 bytes.
788 bytes, 17 lines control
1637 bytes, 20 lines md5sums
263 bytes, 12 lines * postinst #!/bin/sh
376 bytes, 12 lines * prerm #!/bin/sh
Package: nanolyse
Source: nanolyse (1.2.0-4)
Version: 1.2.0-4+b4
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 67
Depends: python3-biopython, python3-mappy, python3:any
Section: science
Priority: optional
Homepage: https://github.com/wdecoster/nanolyse
Description: remove lambda phage reads from a fastq file
NanoLyse is a tool for rapid removal of contaminant DNA, using the
Minimap2 aligner through the mappy Python binding. A typical application
would be the removal of the lambda phage control DNA fragment supplied
by ONT, for which the reference sequence is included in the package.
However, this approach may lead to unwanted loss of reads from regions
highly homologous to the lambda phage genome.
drwxr-xr-x root/root 0 2022-11-24 12:05 ./
drwxr-xr-x root/root 0 2022-11-24 12:05 ./usr/
drwxr-xr-x root/root 0 2022-11-24 12:05 ./usr/bin/
-rwxr-xr-x root/root 963 2022-11-24 12:05 ./usr/bin/NanoLyse
drwxr-xr-x root/root 0 2022-11-24 12:05 ./usr/lib/
drwxr-xr-x root/root 0 2022-11-24 12:05 ./usr/lib/python3/
drwxr-xr-x root/root 0 2022-11-24 12:05 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root 0 2022-11-24 12:05 ./usr/lib/python3/dist-packages/NanoLyse-1.2.0.egg-info/
-rw-r--r-- root/root 3096 2022-11-24 12:05 ./usr/lib/python3/dist-packages/NanoLyse-1.2.0.egg-info/PKG-INFO
-rw-r--r-- root/root 1 2022-11-24 12:05 ./usr/lib/python3/dist-packages/NanoLyse-1.2.0.egg-info/dependency_links.txt
-rw-r--r-- root/root 52 2022-11-24 12:05 ./usr/lib/python3/dist-packages/NanoLyse-1.2.0.egg-info/entry_points.txt
-rw-r--r-- root/root 0 2022-11-24 12:05 ./usr/lib/python3/dist-packages/NanoLyse-1.2.0.egg-info/requires.txt
-rw-r--r-- root/root 19 2022-11-24 12:05 ./usr/lib/python3/dist-packages/NanoLyse-1.2.0.egg-info/top_level.txt
drwxr-xr-x root/root 0 2022-11-24 12:05 ./usr/lib/python3/dist-packages/nanolyse/
-rw-r--r-- root/root 5889 2022-11-24 12:05 ./usr/lib/python3/dist-packages/nanolyse/NanoLyse.py
-rw-r--r-- root/root 33 2020-09-11 11:46 ./usr/lib/python3/dist-packages/nanolyse/__init__.py
-rw-r--r-- root/root 22 2020-09-11 11:46 ./usr/lib/python3/dist-packages/nanolyse/version.py
drwxr-xr-x root/root 0 2022-11-24 12:05 ./usr/share/
drwxr-xr-x root/root 0 2022-11-24 12:05 ./usr/share/doc/
drwxr-xr-x root/root 0 2022-11-24 12:05 ./usr/share/doc/nanolyse/
-rw-r--r-- root/root 278 2022-11-24 12:05 ./usr/share/doc/nanolyse/README.test
-rw-r--r-- root/root 223 2022-11-24 12:05 ./usr/share/doc/nanolyse/changelog.Debian.armhf.gz
-rw-r--r-- root/root 402 2022-11-24 12:05 ./usr/share/doc/nanolyse/changelog.Debian.gz
-rw-r--r-- root/root 1158 2022-11-24 12:05 ./usr/share/doc/nanolyse/copyright
drwxr-xr-x root/root 0 2022-11-24 12:05 ./usr/share/doc/nanolyse/examples/
-rw-r--r-- root/root 386 2022-11-24 12:05 ./usr/share/doc/nanolyse/examples/README
-rw-r--r-- root/root 1384 2022-11-24 12:05 ./usr/share/doc/nanolyse/examples/paired_reads.fastq
-rw-r--r-- root/root 365 2022-11-24 12:05 ./usr/share/doc/nanolyse/run-unit-test
drwxr-xr-x root/root 0 2022-11-24 12:05 ./usr/share/lintian/
drwxr-xr-x root/root 0 2022-11-24 12:05 ./usr/share/lintian/overrides/
-rw-r--r-- root/root 118 2022-11-24 12:05 ./usr/share/lintian/overrides/nanolyse
drwxr-xr-x root/root 0 2022-11-24 12:05 ./usr/share/man/
drwxr-xr-x root/root 0 2022-11-24 12:05 ./usr/share/man/man1/
-rw-r--r-- root/root 617 2022-11-24 12:05 ./usr/share/man/man1/NanoLyse.1.gz
drwxr-xr-x root/root 0 2022-11-24 12:05 ./usr/share/nanolyse/
drwxr-xr-x root/root 0 2022-11-24 12:05 ./usr/share/nanolyse/reference/
-rw-r--r-- root/root 3569 2020-09-11 11:46 ./usr/share/nanolyse/reference/DNA_CS.fasta
-rw-r--r-- root/root 15316 2022-11-24 12:05 ./usr/share/nanolyse/reference/lambda.fasta.gz
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Build Architecture: armhf
Build-Space: 464
Build-Time: 64
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 493
Job: nanolyse_1.2.0-4
Machine Architecture: armhf
Package: nanolyse
Package-Time: 612
Source-Version: 1.2.0-4
Space: 464
Status: successful
Version: 1.2.0-4+b4
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Finished at 2023-02-02T12:05:59Z
Build needed 00:10:12, 464k disc space