nanolyse →
1.2.0-3+b1 →
armhf → 2022-03-16 20:37:42
sbuild (Debian sbuild) 0.78.1 (09 February 2019) on test2019
+==============================================================================+
| nanolyse 1.2.0-3+b1 (armhf) Wed, 16 Mar 2022 20:31:22 +0000 |
+==============================================================================+
Package: nanolyse
Version: 1.2.0-3+b1
Source Version: 1.2.0-3
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
Build Type: any
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/bookworm-staging-armhf-sbuild-9122e3a5-55a4-4be4-958b-11f6a9b24576' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/nanolyse-4ZXThK/resolver-oSOPxz' with '<<RESOLVERDIR>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [12.9 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [13.8 MB]
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Reading package lists...
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'nanolyse' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/nanolyse.git
Please use:
git clone https://salsa.debian.org/med-team/nanolyse.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 40.8 kB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main nanolyse 1.2.0-3 (dsc) [1999 B]
Get:2 http://172.17.4.1/private bookworm-staging/main nanolyse 1.2.0-3 (tar) [34.0 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main nanolyse 1.2.0-3 (diff) [4764 B]
Fetched 40.8 kB in 0s (518 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/nanolyse-4ZXThK/nanolyse-1.2.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/nanolyse-4ZXThK' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, build-essential, fakeroot
Filtered Build-Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [957 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
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Reading package lists...
Reading package lists...
Install main build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext
gettext-base groff-base intltool-debian libarchive-zip-perl
libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl
libicu67 libmagic-mgc libmagic1 libmpdec3 libpipeline1 libpython3-stdlib
libpython3.9-minimal libpython3.9-stdlib libsigsegv2 libsub-override-perl
libtool libuchardet0 libxml2 m4 man-db media-types po-debconf python3
python3-distutils python3-lib2to3 python3-minimal python3-pkg-resources
python3-setuptools python3.9 python3.9-minimal
Suggested packages:
autoconf-archive gnu-standards autoconf-doc dh-make flit python3-build
python3-tomli python3-installer gettext-doc libasprintf-dev libgettextpo-dev
groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less
www-browser libmail-box-perl python3-doc python3-tk python3-venv
python-setuptools-doc python3.9-venv python3.9-doc binfmt-support
Recommended packages:
curl | wget | lynx libarchive-cpio-perl ca-certificates libltdl-dev
libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext
gettext-base groff-base intltool-debian libarchive-zip-perl
libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl
libicu67 libmagic-mgc libmagic1 libmpdec3 libpipeline1 libpython3-stdlib
libpython3.9-minimal libpython3.9-stdlib libsigsegv2 libsub-override-perl
libtool libuchardet0 libxml2 m4 man-db media-types po-debconf python3
python3-distutils python3-lib2to3 python3-minimal python3-pkg-resources
python3-setuptools python3.9 python3.9-minimal
sbuild-build-depends-main-dummy
0 upgraded, 46 newly installed, 0 to remove and 30 not upgraded.
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After this operation, 88.3 MB of additional disk space will be used.
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Get:2 http://172.17.4.1/private bookworm-staging/main armhf libpython3.9-minimal armhf 3.9.10-2+rpi1 [793 kB]
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Get:4 http://172.17.4.1/private bookworm-staging/main armhf python3.9-minimal armhf 3.9.10-2+rpi1 [1595 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf python3-minimal armhf 3.9.8-1 [38.5 kB]
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Get:7 http://172.17.4.1/private bookworm-staging/main armhf libmpdec3 armhf 2.5.1-2+rpi1 [73.5 kB]
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Get:10 http://172.17.4.1/private bookworm-staging/main armhf libpython3-stdlib armhf 3.9.8-1 [21.6 kB]
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Get:12 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
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Get:14 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.37.3-1 [136 kB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.5-1 [32.9 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.10.1-1 [1358 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.41-2 [295 kB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.41-2 [119 kB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.41-2 [65.8 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-4 [171 kB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf libsigsegv2 armhf 2.14-1 [36.6 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.1 [823 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-4 [510 kB]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.6 [193 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.6-15 [513 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:31 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.0-1 [15.8 kB]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.186-1 [174 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf libicu67 armhf 67.1-7 [8291 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.13+dfsg-1 [593 kB]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-4 [1215 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.6 [1054 kB]
Get:42 http://172.17.4.1/private bookworm-staging/main armhf python3-lib2to3 all 3.9.10-1 [79.4 kB]
Get:43 http://172.17.4.1/private bookworm-staging/main armhf python3-distutils all 3.9.10-1 [146 kB]
Get:44 http://172.17.4.1/private bookworm-staging/main armhf dh-python all 5.20220215 [112 kB]
Get:45 http://172.17.4.1/private bookworm-staging/main armhf python3-pkg-resources all 59.6.0-1.2 [196 kB]
Get:46 http://172.17.4.1/private bookworm-staging/main armhf python3-setuptools all 59.6.0-1.2 [401 kB]
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+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.19.20-v7+ #1 SMP Mon Mar 18 11:37:02 GMT 2019 armhf (armv7l)
Toolchain package versions: binutils_2.37.90.20220207-1+rpi1 dpkg-dev_1.21.1+rpi1 g++-11_11.2.0-16+rpi1 gcc-11_11.2.0-16+rpi1 libc6-dev_2.33-5+rpi1 libstdc++-11-dev_11.2.0-16+rpi1 libstdc++6_11.2.0-16+rpi1 linux-libc-dev_5.15.15-2+rpi1
Package versions: adduser_3.118 apt_2.3.15 autoconf_2.71-2 automake_1:1.16.5-1.1 autopoint_0.21-4 autotools-dev_20220109.1 base-files_12.2+rpi1 base-passwd_3.5.52 bash_5.1-6 binutils_2.37.90.20220207-1+rpi1 binutils-arm-linux-gnueabihf_2.37.90.20220207-1+rpi1 binutils-common_2.37.90.20220207-1+rpi1 bsdextrautils_2.37.3-1 bsdutils_1:2.37.3-1 build-essential_12.9 bzip2_1.0.8-5 coreutils_8.32-4.1 cpp_4:11.2.0-2+rpi1 cpp-11_11.2.0-16+rpi1 dash_0.5.11+git20210903+057cd650a4ed-3 debconf_1.5.79 debhelper_13.6 debianutils_4.11.2 dh-autoreconf_20 dh-python_5.20220215 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.7-5 dirmngr_2.2.27-3 dpkg_1.21.1+rpi1 dpkg-dev_1.21.1+rpi1 dwz_0.14-1 e2fsprogs_1.46.5-2 fakeroot_1.27-1 file_1:5.41-2 findutils_4.8.0-1 g++_4:11.2.0-2+rpi1 g++-11_11.2.0-16+rpi1 gcc_4:11.2.0-2+rpi1 gcc-11_11.2.0-16+rpi1 gcc-11-base_11.2.0-16+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-4 gettext-base_0.21-4 gnupg_2.2.27-3 gnupg-l10n_2.2.27-3 gnupg-utils_2.2.27-3 gpg_2.2.27-3 gpg-agent_2.2.27-3 gpg-wks-client_2.2.27-3 gpg-wks-server_2.2.27-3 gpgconf_2.2.27-3 gpgsm_2.2.27-3 gpgv_2.2.27-3 grep_3.7-1 groff-base_1.22.4-8 gzip_1.10-4 hostname_3.23 init-system-helpers_1.61 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libapt-pkg6.0_2.3.15 libarchive-zip-perl_1.68-1 libasan6_11.2.0-16+rpi1 libassuan0_2.5.5-1 libatomic1_11.2.0-16+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.7-1 libaudit1_1:3.0.7-1 libbinutils_2.37.90.20220207-1+rpi1 libblkid1_2.37.3-1 libbz2-1.0_1.0.8-5 libc-bin_2.33-5+rpi1 libc-dev-bin_2.33-5+rpi1 libc6_2.33-5+rpi1 libc6-dev_2.33-5+rpi1 libcap-ng0_0.7.9-2.2+b1 libcap2_1:2.44-1 libcc1-0_11.2.0-16+rpi1 libcom-err2_1.46.5-2 libcrypt-dev_1:4.4.27-1.1 libcrypt1_1:4.4.27-1.1 libctf-nobfd0_2.37.90.20220207-1+rpi1 libctf0_2.37.90.20220207-1+rpi1 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.261 libdebhelper-perl_13.6 libdpkg-perl_1.21.1+rpi1 libelf1_0.186-1 libexpat1_2.4.4-1 libext2fs2_1.46.5-2 libfakeroot_1.27-1 libffi8_3.4.2-4 libfile-stripnondeterminism-perl_1.13.0-1 libgcc-11-dev_11.2.0-16+rpi1 libgcc-s1_11.2.0-16+rpi1 libgcrypt20_1.9.4-5 libgdbm-compat4_1.23-1 libgdbm6_1.23-1 libgmp10_2:6.2.1+dfsg-3 libgnutls30_3.7.3-4 libgomp1_11.2.0-16+rpi1 libgpg-error0_1.43-3 libgssapi-krb5-2_1.18.3-7 libhogweed6_3.7.3-1 libicu67_67.1-7 libidn2-0_2.3.2-2 libisl23_0.24-2 libk5crypto3_1.18.3-7 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-7 libkrb5support0_1.18.3-7 libksba8_1.6.0-2 libldap-2.4-2_2.4.59+dfsg-1+b1 liblz4-1_1.9.3-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.41-2 libmagic1_1:5.41-2 libmount1_2.37.3-1 libmpc3_1.2.1-1 libmpdec3_2.5.1-2+rpi1 libmpfr6_4.1.0-3 libncursesw6_6.3-2 libnettle8_3.7.3-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.0-6 libpam-modules_1.4.0-11 libpam-modules-bin_1.4.0-11 libpam-runtime_1.4.0-11 libpam0g_1.4.0-11 libpcre2-8-0_10.39-3 libpcre3_2:8.39-13 libperl5.32_5.32.1-6 libperl5.34_5.34.0-3 libpipeline1_1.5.5-1 libpython3-stdlib_3.9.8-1 libpython3.9-minimal_3.9.10-2+rpi1 libpython3.9-stdlib_3.9.10-2+rpi1 libreadline8_8.1.2-1 libsasl2-2_2.1.27+dfsg2-3 libsasl2-modules-db_2.1.27+dfsg2-3 libseccomp2_2.5.3-2+rpi1 libselinux1_3.3-1 libsemanage-common_3.3-1 libsemanage2_3.3-1 libsepol1_3.1-1 libsepol2_3.3-1 libsigsegv2_2.14-1 libsmartcols1_2.37.3-1 libsqlite3-0_3.37.2-2 libss2_1.46.5-2 libssl1.1_1.1.1m-1 libstdc++-11-dev_11.2.0-16+rpi1 libstdc++6_11.2.0-16+rpi1 libsub-override-perl_0.09-2 libsystemd0_250.3-2+rpi1 libtasn1-6_4.18.0-4 libtinfo6_6.3-2 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15 libubsan1_11.2.0-16+rpi1 libuchardet0_0.0.7-1 libudev1_250.3-2+rpi1 libunistring2_1.0-1 libuuid1_2.37.3-1 libxml2_2.9.13+dfsg-1 libxxhash0_0.8.0-2+rpi1 libzstd1_1.4.8+dfsg-3+rpi1 linux-libc-dev_5.15.15-2+rpi1 login_1:4.11.1+dfsg1-1 logsave_1.46.5-2 lsb-base_11.1.0+rpi1 m4_1.4.18-5 make_4.3-4.1 man-db_2.10.1-1 mawk_1.3.4.20200120-3 media-types_6.0.0 mount_2.37.3-1 ncurses-base_6.3-2 ncurses-bin_6.3-2 passwd_1:4.11.1+dfsg1-1 patch_2.7.6-7 perl_5.34.0-3 perl-base_5.34.0-3 perl-modules-5.32_5.32.1-6 perl-modules-5.34_5.34.0-3 pinentry-curses_1.1.0-4 po-debconf_1.0.21+nmu1 python3_3.9.8-1 python3-distutils_3.9.10-1 python3-lib2to3_3.9.10-1 python3-minimal_3.9.8-1 python3-pkg-resources_59.6.0-1.2 python3-setuptools_59.6.0-1.2 python3.9_3.9.10-2+rpi1 python3.9-minimal_3.9.10-2+rpi1 raspbian-archive-keyring_20120528.2 readline-common_8.1.2-1 rpcsvc-proto_1.4.2-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.01-1 tar_1.34+dfsg-1 tzdata_2021e-1 util-linux_2.37.3-1 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: nanolyse
Binary: nanolyse
Architecture: any
Version: 1.2.0-3
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>
Homepage: https://github.com/wdecoster/nanolyse
Standards-Version: 4.6.0
Vcs-Browser: https://salsa.debian.org/med-team/nanolyse
Vcs-Git: https://salsa.debian.org/med-team/nanolyse.git
Testsuite: autopkgtest
Build-Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools
Package-List:
nanolyse deb science optional arch=any
Checksums-Sha1:
e1395d91ea7796c9a6fc88cd944bd234a92da761 34030 nanolyse_1.2.0.orig.tar.gz
bafb74d94f66a7fd95ead5ed7ff768bf1add993f 4764 nanolyse_1.2.0-3.debian.tar.xz
Checksums-Sha256:
99a54266c9a1a31ea196d6a35195e7f0a48ee3c3103faecdfd00c945a41d582d 34030 nanolyse_1.2.0.orig.tar.gz
879b1b9742b92f3c6e77a775d1c58733bbc37032a1a0b29f15ae3ac0c257d1d2 4764 nanolyse_1.2.0-3.debian.tar.xz
Files:
c3323e3284203496566fe19a6b4822f1 34030 nanolyse_1.2.0.orig.tar.gz
26bd1b4bbc6a41b8cf0f0156e790ba66 4764 nanolyse_1.2.0-3.debian.tar.xz
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gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.4zhB9YXw/trustedkeys.kbx': General error
gpgv: Signature made Tue Feb 22 12:40:06 2022 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify signature ./nanolyse_1.2.0-3.dsc
dpkg-source: info: extracting nanolyse in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking nanolyse_1.2.0.orig.tar.gz
dpkg-source: info: unpacking nanolyse_1.2.0-3.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying path_to_reference.patch
Check disk space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 1.2.0-3+b1
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/112/bus
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
INVOCATION_ID=12b0d11b34b646c0abd5fc586dfab6e4
JOURNAL_STREAM=8:22125
LANG=en_GB.UTF-8
LC_ALL=C.UTF-8
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=117
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-9122e3a5-55a4-4be4-958b-11f6a9b24576
SCHROOT_UID=112
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
XDG_RUNTIME_DIR=/run/user/112
XDG_SESSION_CLASS=background
XDG_SESSION_ID=c69251
XDG_SESSION_TYPE=unspecified
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage -us -uc -mRaspbian pi4 based autobuilder <root@raspbian.org> -B -rfakeroot
dpkg-buildpackage: info: source package nanolyse
dpkg-buildpackage: info: source version 1.2.0-3+b1
dpkg-buildpackage: info: source distribution bookworm-staging
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --with python3 --buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
I: pybuild base:237: python3.9 setup.py clean
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.9' does not exist -- can't clean it
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary-arch
dh binary-arch --with python3 --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:237: python3.9 setup.py config
running config
dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:237: /usr/bin/python3 setup.py build
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/nanolyse
copying nanolyse/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/nanolyse
copying nanolyse/version.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/nanolyse
copying nanolyse/NanoLyse.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/nanolyse
package init file 'reference/__init__.py' not found (or not a regular file)
running egg_info
creating NanoLyse.egg-info
writing NanoLyse.egg-info/PKG-INFO
writing dependency_links to NanoLyse.egg-info/dependency_links.txt
writing entry points to NanoLyse.egg-info/entry_points.txt
writing requirements to NanoLyse.egg-info/requires.txt
writing top-level names to NanoLyse.egg-info/top_level.txt
writing manifest file 'NanoLyse.egg-info/SOURCES.txt'
reading manifest file 'NanoLyse.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE'
writing manifest file 'NanoLyse.egg-info/SOURCES.txt'
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/reference
copying reference/lambda.fasta.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/reference
dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:237: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build; python3.9 -m unittest discover -v
----------------------------------------------------------------------
Ran 0 tests in 0.000s
OK
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
dh_auto_install --destdir=debian/nanolyse/ -a -O--buildsystem=pybuild
I: pybuild base:237: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/nanolyse
running install
/usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
warnings.warn(
running build
running build_py
package init file 'reference/__init__.py' not found (or not a regular file)
running egg_info
writing NanoLyse.egg-info/PKG-INFO
writing dependency_links to NanoLyse.egg-info/dependency_links.txt
writing entry points to NanoLyse.egg-info/entry_points.txt
writing requirements to NanoLyse.egg-info/requires.txt
writing top-level names to NanoLyse.egg-info/top_level.txt
reading manifest file 'NanoLyse.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE'
writing manifest file 'NanoLyse.egg-info/SOURCES.txt'
running install_lib
creating /<<PKGBUILDDIR>>/debian/nanolyse/usr
creating /<<PKGBUILDDIR>>/debian/nanolyse/usr/lib
creating /<<PKGBUILDDIR>>/debian/nanolyse/usr/lib/python3.9
creating /<<PKGBUILDDIR>>/debian/nanolyse/usr/lib/python3.9/dist-packages
creating /<<PKGBUILDDIR>>/debian/nanolyse/usr/lib/python3.9/dist-packages/nanolyse
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/nanolyse/__init__.py -> /<<PKGBUILDDIR>>/debian/nanolyse/usr/lib/python3.9/dist-packages/nanolyse
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/nanolyse/version.py -> /<<PKGBUILDDIR>>/debian/nanolyse/usr/lib/python3.9/dist-packages/nanolyse
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/nanolyse/NanoLyse.py -> /<<PKGBUILDDIR>>/debian/nanolyse/usr/lib/python3.9/dist-packages/nanolyse
creating /<<PKGBUILDDIR>>/debian/nanolyse/usr/lib/python3.9/dist-packages/nanolyse/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/nanolyse/__pycache__/__init__.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/nanolyse/usr/lib/python3.9/dist-packages/nanolyse/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/nanolyse/__pycache__/version.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/nanolyse/usr/lib/python3.9/dist-packages/nanolyse/__pycache__
creating /<<PKGBUILDDIR>>/debian/nanolyse/usr/lib/python3.9/dist-packages/reference
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/reference/lambda.fasta.gz -> /<<PKGBUILDDIR>>/debian/nanolyse/usr/lib/python3.9/dist-packages/reference
byte-compiling /<<PKGBUILDDIR>>/debian/nanolyse/usr/lib/python3.9/dist-packages/nanolyse/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/nanolyse/usr/lib/python3.9/dist-packages/nanolyse/version.py to version.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/nanolyse/usr/lib/python3.9/dist-packages/nanolyse/NanoLyse.py to NanoLyse.cpython-39.pyc
running install_egg_info
Copying NanoLyse.egg-info to /<<PKGBUILDDIR>>/debian/nanolyse/usr/lib/python3.9/dist-packages/NanoLyse-1.2.0.egg-info
Skipping SOURCES.txt
running install_scripts
Installing NanoLyse script to /<<PKGBUILDDIR>>/debian/nanolyse/usr/bin
debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install
rm -r debian/nanolyse/usr/lib/python3*/dist-packages/reference
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a -O--buildsystem=pybuild
dh_installchangelogs -a -O--buildsystem=pybuild
dh_installexamples -a -O--buildsystem=pybuild
dh_installman -a -O--buildsystem=pybuild
dh_python3 -a -O--buildsystem=pybuild
dh_installsystemduser -a -O--buildsystem=pybuild
dh_lintian -a -O--buildsystem=pybuild
dh_perl -a -O--buildsystem=pybuild
dh_link -a -O--buildsystem=pybuild
dh_strip_nondeterminism -a -O--buildsystem=pybuild
dh_compress -a -O--buildsystem=pybuild
dh_fixperms -a -O--buildsystem=pybuild
dh_missing -a -O--buildsystem=pybuild
dh_dwz -a -O--buildsystem=pybuild
dh_strip -a -O--buildsystem=pybuild
dh_makeshlibs -a -O--buildsystem=pybuild
dh_shlibdeps -a -O--buildsystem=pybuild
dh_installdeb -a -O--buildsystem=pybuild
dh_gencontrol -a -O--buildsystem=pybuild
dh_md5sums -a -O--buildsystem=pybuild
dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'nanolyse' in '../nanolyse_1.2.0-3+b1_armhf.deb'.
dpkg-genbuildinfo --build=any -O../nanolyse_1.2.0-3+b1_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian pi4 based autobuilder <root@raspbian.org> -O../nanolyse_1.2.0-3+b1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2022-03-16T20:37:36Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
nanolyse_1.2.0-3+b1_armhf.changes:
----------------------------------
Format: 1.8
Date: Wed, 16 Mar 2022 20:37:18 +0000
Source: nanolyse (1.2.0-3)
Binary: nanolyse
Binary-Only: yes
Architecture: armhf
Version: 1.2.0-3+b1
Distribution: bookworm-staging
Urgency: low
Maintainer: Raspbian pi4 based autobuilder <root@raspbian.org>
Changed-By: Raspbian pi4 based autobuilder <root@raspbian.org>
Description:
nanolyse - remove lambda phage reads from a fastq file
Changes:
nanolyse (1.2.0-3+b1) bookworm-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
Checksums-Sha1:
f9b73faf7d8ab6a8bace8bd4179310fa06addef0 5595 nanolyse_1.2.0-3+b1_armhf.buildinfo
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Files:
c4115b38999a40c2f495982b78fdb230 5595 science optional nanolyse_1.2.0-3+b1_armhf.buildinfo
0b623a1bc8588639787364041b54aa30 25616 science optional nanolyse_1.2.0-3+b1_armhf.deb
+------------------------------------------------------------------------------+
| Buildinfo |
+------------------------------------------------------------------------------+
Format: 1.0
Source: nanolyse (1.2.0-3)
Binary: nanolyse
Architecture: armhf
Version: 1.2.0-3+b1
Binary-Only-Changes:
nanolyse (1.2.0-3+b1) bookworm-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
.
-- Raspbian pi4 based autobuilder <root@raspbian.org> Wed, 16 Mar 2022 20:37:18 +0000
Checksums-Md5:
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Checksums-Sha1:
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Checksums-Sha256:
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Build-Origin: Raspbian
Build-Architecture: armhf
Build-Date: Wed, 16 Mar 2022 20:37:35 +0000
Build-Path: /<<PKGBUILDDIR>>
Installed-Build-Depends:
autoconf (= 2.71-2),
automake (= 1:1.16.5-1.1),
autopoint (= 0.21-4),
autotools-dev (= 20220109.1),
base-files (= 12.2+rpi1),
base-passwd (= 3.5.52),
bash (= 5.1-6),
binutils (= 2.37.90.20220207-1+rpi1),
binutils-arm-linux-gnueabihf (= 2.37.90.20220207-1+rpi1),
binutils-common (= 2.37.90.20220207-1+rpi1),
bsdextrautils (= 2.37.3-1),
bsdutils (= 1:2.37.3-1),
build-essential (= 12.9),
bzip2 (= 1.0.8-5),
coreutils (= 8.32-4.1),
cpp (= 4:11.2.0-2+rpi1),
cpp-11 (= 11.2.0-16+rpi1),
dash (= 0.5.11+git20210903+057cd650a4ed-3),
debconf (= 1.5.79),
debhelper (= 13.6),
debianutils (= 4.11.2),
dh-autoreconf (= 20),
dh-python (= 5.20220215),
dh-strip-nondeterminism (= 1.13.0-1),
diffutils (= 1:3.7-5),
dpkg (= 1.21.1+rpi1),
dpkg-dev (= 1.21.1+rpi1),
dwz (= 0.14-1),
file (= 1:5.41-2),
findutils (= 4.8.0-1),
g++ (= 4:11.2.0-2+rpi1),
g++-11 (= 11.2.0-16+rpi1),
gcc (= 4:11.2.0-2+rpi1),
gcc-11 (= 11.2.0-16+rpi1),
gcc-11-base (= 11.2.0-16+rpi1),
gettext (= 0.21-4),
gettext-base (= 0.21-4),
grep (= 3.7-1),
groff-base (= 1.22.4-8),
gzip (= 1.10-4),
hostname (= 3.23),
init-system-helpers (= 1.61),
intltool-debian (= 0.35.0+20060710.5),
libacl1 (= 2.3.1-1),
libarchive-zip-perl (= 1.68-1),
libasan6 (= 11.2.0-16+rpi1),
libatomic1 (= 11.2.0-16+rpi1),
libattr1 (= 1:2.5.1-1),
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libbinutils (= 2.37.90.20220207-1+rpi1),
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libbz2-1.0 (= 1.0.8-5),
libc-bin (= 2.33-5+rpi1),
libc-dev-bin (= 2.33-5+rpi1),
libc6 (= 2.33-5+rpi1),
libc6-dev (= 2.33-5+rpi1),
libcap-ng0 (= 0.7.9-2.2+b1),
libcap2 (= 1:2.44-1),
libcc1-0 (= 11.2.0-16+rpi1),
libcom-err2 (= 1.46.5-2),
libcrypt-dev (= 1:4.4.27-1.1),
libcrypt1 (= 1:4.4.27-1.1),
libctf-nobfd0 (= 2.37.90.20220207-1+rpi1),
libctf0 (= 2.37.90.20220207-1+rpi1),
libdb5.3 (= 5.3.28+dfsg1-0.8),
libdebconfclient0 (= 0.261),
libdebhelper-perl (= 13.6),
libdpkg-perl (= 1.21.1+rpi1),
libelf1 (= 0.186-1),
libexpat1 (= 2.4.4-1),
libffi8 (= 3.4.2-4),
libfile-stripnondeterminism-perl (= 1.13.0-1),
libgcc-11-dev (= 11.2.0-16+rpi1),
libgcc-s1 (= 11.2.0-16+rpi1),
libgcrypt20 (= 1.9.4-5),
libgdbm-compat4 (= 1.23-1),
libgdbm6 (= 1.23-1),
libgmp10 (= 2:6.2.1+dfsg-3),
libgomp1 (= 11.2.0-16+rpi1),
libgpg-error0 (= 1.43-3),
libgssapi-krb5-2 (= 1.18.3-7),
libicu67 (= 67.1-7),
libisl23 (= 0.24-2),
libk5crypto3 (= 1.18.3-7),
libkeyutils1 (= 1.6.1-2),
libkrb5-3 (= 1.18.3-7),
libkrb5support0 (= 1.18.3-7),
liblz4-1 (= 1.9.3-2),
liblzma5 (= 5.2.5-2),
libmagic-mgc (= 1:5.41-2),
libmagic1 (= 1:5.41-2),
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libmpc3 (= 1.2.1-1),
libmpdec3 (= 2.5.1-2+rpi1),
libmpfr6 (= 4.1.0-3),
libncursesw6 (= 6.3-2),
libnsl-dev (= 1.3.0-2),
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libpam-modules-bin (= 1.4.0-11),
libpam-runtime (= 1.4.0-11),
libpam0g (= 1.4.0-11),
libpcre2-8-0 (= 10.39-3),
libpcre3 (= 2:8.39-13),
libperl5.34 (= 5.34.0-3),
libpipeline1 (= 1.5.5-1),
libpython3-stdlib (= 3.9.8-1),
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libpython3.9-stdlib (= 3.9.10-2+rpi1),
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libseccomp2 (= 2.5.3-2+rpi1),
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libstdc++6 (= 11.2.0-16+rpi1),
libsub-override-perl (= 0.09-2),
libsystemd0 (= 250.3-2+rpi1),
libtinfo6 (= 6.3-2),
libtirpc-common (= 1.3.2-2),
libtirpc-dev (= 1.3.2-2),
libtirpc3 (= 1.3.2-2),
libtool (= 2.4.6-15),
libubsan1 (= 11.2.0-16+rpi1),
libuchardet0 (= 0.0.7-1),
libudev1 (= 250.3-2+rpi1),
libunistring2 (= 1.0-1),
libuuid1 (= 2.37.3-1),
libxml2 (= 2.9.13+dfsg-1),
libzstd1 (= 1.4.8+dfsg-3+rpi1),
linux-libc-dev (= 5.15.15-2+rpi1),
login (= 1:4.11.1+dfsg1-1),
lsb-base (= 11.1.0+rpi1),
m4 (= 1.4.18-5),
make (= 4.3-4.1),
man-db (= 2.10.1-1),
mawk (= 1.3.4.20200120-3),
media-types (= 6.0.0),
ncurses-base (= 6.3-2),
ncurses-bin (= 6.3-2),
patch (= 2.7.6-7),
perl (= 5.34.0-3),
perl-base (= 5.34.0-3),
perl-modules-5.34 (= 5.34.0-3),
po-debconf (= 1.0.21+nmu1),
python3 (= 3.9.8-1),
python3-distutils (= 3.9.10-1),
python3-lib2to3 (= 3.9.10-1),
python3-minimal (= 3.9.8-1),
python3-pkg-resources (= 59.6.0-1.2),
python3-setuptools (= 59.6.0-1.2),
python3.9 (= 3.9.10-2+rpi1),
python3.9-minimal (= 3.9.10-2+rpi1),
readline-common (= 8.1.2-1),
rpcsvc-proto (= 1.4.2-4),
sed (= 4.8-1),
sensible-utils (= 0.0.17),
sysvinit-utils (= 3.01-1),
tar (= 1.34+dfsg-1),
tzdata (= 2021e-1),
util-linux (= 2.37.3-1),
xz-utils (= 5.2.5-2),
zlib1g (= 1:1.2.11.dfsg-2)
Environment:
DEB_BUILD_OPTIONS="parallel=4"
LANG="en_GB.UTF-8"
LC_ALL="C.UTF-8"
SOURCE_DATE_EPOCH="1647463038"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
nanolyse_1.2.0-3+b1_armhf.deb
-----------------------------
new Debian package, version 2.0.
size 25616 bytes: control archive=1732 bytes.
788 bytes, 17 lines control
1637 bytes, 20 lines md5sums
253 bytes, 12 lines * postinst #!/bin/sh
402 bytes, 12 lines * prerm #!/bin/sh
Package: nanolyse
Source: nanolyse (1.2.0-3)
Version: 1.2.0-3+b1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 67
Depends: python3-biopython, python3-mappy, python3:any
Section: science
Priority: optional
Homepage: https://github.com/wdecoster/nanolyse
Description: remove lambda phage reads from a fastq file
NanoLyse is a tool for rapid removal of contaminant DNA, using the
Minimap2 aligner through the mappy Python binding. A typical application
would be the removal of the lambda phage control DNA fragment supplied
by ONT, for which the reference sequence is included in the package.
However, this approach may lead to unwanted loss of reads from regions
highly homologous to the lambda phage genome.
drwxr-xr-x root/root 0 2022-03-16 20:37 ./
drwxr-xr-x root/root 0 2022-03-16 20:37 ./usr/
drwxr-xr-x root/root 0 2022-03-16 20:37 ./usr/bin/
-rwxr-xr-x root/root 963 2022-03-16 20:37 ./usr/bin/NanoLyse
drwxr-xr-x root/root 0 2022-03-16 20:37 ./usr/lib/
drwxr-xr-x root/root 0 2022-03-16 20:37 ./usr/lib/python3/
drwxr-xr-x root/root 0 2022-03-16 20:37 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root 0 2022-03-16 20:37 ./usr/lib/python3/dist-packages/NanoLyse-1.2.0.egg-info/
-rw-r--r-- root/root 3116 2022-03-16 20:37 ./usr/lib/python3/dist-packages/NanoLyse-1.2.0.egg-info/PKG-INFO
-rw-r--r-- root/root 1 2022-03-16 20:37 ./usr/lib/python3/dist-packages/NanoLyse-1.2.0.egg-info/dependency_links.txt
-rw-r--r-- root/root 53 2022-03-16 20:37 ./usr/lib/python3/dist-packages/NanoLyse-1.2.0.egg-info/entry_points.txt
-rw-r--r-- root/root 0 2022-03-16 20:37 ./usr/lib/python3/dist-packages/NanoLyse-1.2.0.egg-info/requires.txt
-rw-r--r-- root/root 19 2022-03-16 20:37 ./usr/lib/python3/dist-packages/NanoLyse-1.2.0.egg-info/top_level.txt
drwxr-xr-x root/root 0 2022-03-16 20:37 ./usr/lib/python3/dist-packages/nanolyse/
-rw-r--r-- root/root 5889 2022-03-16 20:37 ./usr/lib/python3/dist-packages/nanolyse/NanoLyse.py
-rw-r--r-- root/root 33 2020-09-11 11:46 ./usr/lib/python3/dist-packages/nanolyse/__init__.py
-rw-r--r-- root/root 22 2020-09-11 11:46 ./usr/lib/python3/dist-packages/nanolyse/version.py
drwxr-xr-x root/root 0 2022-03-16 20:37 ./usr/share/
drwxr-xr-x root/root 0 2022-03-16 20:37 ./usr/share/doc/
drwxr-xr-x root/root 0 2022-03-16 20:37 ./usr/share/doc/nanolyse/
-rw-r--r-- root/root 278 2022-02-22 11:42 ./usr/share/doc/nanolyse/README.test
-rw-r--r-- root/root 218 2022-03-16 20:37 ./usr/share/doc/nanolyse/changelog.Debian.armhf.gz
-rw-r--r-- root/root 373 2022-03-16 20:37 ./usr/share/doc/nanolyse/changelog.Debian.gz
-rw-r--r-- root/root 1158 2022-02-22 11:42 ./usr/share/doc/nanolyse/copyright
drwxr-xr-x root/root 0 2022-03-16 20:37 ./usr/share/doc/nanolyse/examples/
-rw-r--r-- root/root 386 2022-02-22 11:42 ./usr/share/doc/nanolyse/examples/README
-rw-r--r-- root/root 1384 2022-02-22 11:42 ./usr/share/doc/nanolyse/examples/paired_reads.fastq
-rw-r--r-- root/root 365 2022-02-22 11:42 ./usr/share/doc/nanolyse/run-unit-test
drwxr-xr-x root/root 0 2022-03-16 20:37 ./usr/share/lintian/
drwxr-xr-x root/root 0 2022-03-16 20:37 ./usr/share/lintian/overrides/
-rw-r--r-- root/root 118 2022-02-22 11:42 ./usr/share/lintian/overrides/nanolyse
drwxr-xr-x root/root 0 2022-03-16 20:37 ./usr/share/man/
drwxr-xr-x root/root 0 2022-03-16 20:37 ./usr/share/man/man1/
-rw-r--r-- root/root 617 2022-03-16 20:37 ./usr/share/man/man1/NanoLyse.1.gz
drwxr-xr-x root/root 0 2022-03-16 20:37 ./usr/share/nanolyse/
drwxr-xr-x root/root 0 2022-03-16 20:37 ./usr/share/nanolyse/reference/
-rw-r--r-- root/root 3569 2020-09-11 11:46 ./usr/share/nanolyse/reference/DNA_CS.fasta
-rw-r--r-- root/root 15316 2022-03-16 20:37 ./usr/share/nanolyse/reference/lambda.fasta.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build Type: any
Build-Space: 456
Build-Time: 17
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 328
Job: nanolyse_1.2.0-3
Machine Architecture: armhf
Package: nanolyse
Package-Time: 374
Source-Version: 1.2.0-3
Space: 456
Status: successful
Version: 1.2.0-3+b1
--------------------------------------------------------------------------------
Finished at 2022-03-16T20:37:36Z
Build needed 00:06:14, 456k disk space