nanolyse →
1.2.0-1+b2 →
armhf → 2020-12-07 21:19:00
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-01
+==============================================================================+
| nanolyse 1.2.0-1+b2 (armhf) Mon, 07 Dec 2020 21:07:54 +0000 |
+==============================================================================+
Package: nanolyse
Version: 1.2.0-1+b2
Source Version: 1.2.0-1
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/bullseye-staging-armhf-sbuild-e3cfba0f-5cf2-42de-972d-f93342debff5' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.9 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.9 MB]
Fetched 24.9 MB in 25s (999 kB/s)
Reading package lists...
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'nanolyse' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/nanolyse.git
Please use:
git clone https://salsa.debian.org/med-team/nanolyse.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 40.7 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main nanolyse 1.2.0-1 (dsc) [1999 B]
Get:2 http://172.17.0.1/private bullseye-staging/main nanolyse 1.2.0-1 (tar) [34.0 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main nanolyse 1.2.0-1 (diff) [4628 B]
Fetched 40.7 kB in 0s (193 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/nanolyse-DwxIfM/nanolyse-1.2.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/nanolyse-DwxIfM' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-R6s44p/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-R6s44p/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-R6s44p/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-R6s44p/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-R6s44p/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-R6s44p/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-R6s44p/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-R6s44p/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-R6s44p/apt_archive ./ Packages [432 B]
Fetched 2108 B in 1s (2655 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-R6s44p/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-R6s44p/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 35506D9A48F77B2E
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
bsdextrautils krb5-locales libalgorithm-diff-perl libalgorithm-merge-perl
libpam-cap netbase sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 67 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-R6s44p/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (22.3 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12798 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools
Filtered Build-Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools
dpkg-deb: building package 'sbuild-build-depends-nanolyse-dummy' in '/<<BUILDDIR>>/resolver-R6s44p/apt_archive/sbuild-build-depends-nanolyse-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-nanolyse-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-R6s44p/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-R6s44p/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-R6s44p/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-R6s44p/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-R6s44p/apt_archive ./ Sources [511 B]
Get:5 copy:/<<BUILDDIR>>/resolver-R6s44p/apt_archive ./ Packages [591 B]
Fetched 2435 B in 1s (3116 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-R6s44p/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-R6s44p/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 35506D9A48F77B2E
Reading package lists...
Install nanolyse build dependencies (apt-based resolver)
--------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libalgorithm-diff-perl libalgorithm-merge-perl libpam-cap
netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev debhelper dh-autoreconf dh-python
dh-strip-nondeterminism dwz file gettext gettext-base groff-base
intltool-debian libarchive-zip-perl libcroco3 libdebhelper-perl libelf1
libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libicu67
libmagic-mgc libmagic1 libpipeline1 libpython3-stdlib libpython3.9-minimal
libpython3.9-stdlib libsigsegv2 libsub-override-perl libtool libuchardet0
libxml2 m4 mailcap man-db media-types mime-support po-debconf python3
python3-distutils python3-lib2to3 python3-minimal python3-pkg-resources
python3-setuptools python3.9 python3.9-minimal
Suggested packages:
autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc
libasprintf-dev libgettextpo-dev groff libtool-doc gfortran
| fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
libmail-box-perl python3-doc python3-tk python3-venv python-setuptools-doc
python3.9-venv python3.9-doc binfmt-support
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev debhelper dh-autoreconf dh-python
dh-strip-nondeterminism dwz file gettext gettext-base groff-base
intltool-debian libarchive-zip-perl libcroco3 libdebhelper-perl libelf1
libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libicu67
libmagic-mgc libmagic1 libpipeline1 libpython3-stdlib libpython3.9-minimal
libpython3.9-stdlib libsigsegv2 libsub-override-perl libtool libuchardet0
libxml2 m4 mailcap man-db media-types mime-support po-debconf python3
python3-distutils python3-lib2to3 python3-minimal python3-pkg-resources
python3-setuptools python3.9 python3.9-minimal
sbuild-build-depends-nanolyse-dummy
0 upgraded, 48 newly installed, 0 to remove and 67 not upgraded.
Need to get 24.2 MB of archives.
After this operation, 91.5 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-R6s44p/apt_archive ./ sbuild-build-depends-nanolyse-dummy 0.invalid.0 [876 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-5 [783 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.3-2 [1269 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf libpython3.9-minimal armhf 3.9.0-5+rpi1 [788 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.10-1 [73.3 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf python3.9-minimal armhf 3.9.0-5+rpi1 [1628 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf python3-minimal armhf 3.9.0-4 [37.8 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf media-types all 1.0.1 [18.2 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf mailcap all 3.67 [31.3 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf mime-support all 3.66 [10.9 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf libpython3.9-stdlib armhf 3.9.0-5+rpi1 [1654 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf python3.9 armhf 3.9.0-5+rpi1 [455 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf libpython3-stdlib armhf 3.9.0-4 [21.0 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf python3 armhf 3.9.0-4 [64.1 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-5 [262 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.38-5 [113 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-5 [67.0 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.2-4 [801 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-14 [513 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 13.2.1 [188 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.9.0-1 [25.5 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.9.0-1 [15.2 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.182-1 [162 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.66.3-2 [1178 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf libicu67 armhf 67.1-4 [8289 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-6.3 [580 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 13.2.1 [1007 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf python3-lib2to3 all 3.8.6-1 [78.4 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf python3-distutils all 3.8.6-1 [145 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf dh-python all 4.20201102 [99.3 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf python3-pkg-resources all 50.3.0-1 [187 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf python3-setuptools all 50.3.0-1 [511 kB]
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Preparing to unpack .../25-intltool-debian_0.35.0+20060710.5_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.5) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../26-po-debconf_1.0.21_all.deb ...
Unpacking po-debconf (1.0.21) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../27-debhelper_13.2.1_all.deb ...
Unpacking debhelper (13.2.1) ...
Selecting previously unselected package python3-lib2to3.
Preparing to unpack .../28-python3-lib2to3_3.8.6-1_all.deb ...
Unpacking python3-lib2to3 (3.8.6-1) ...
Selecting previously unselected package python3-distutils.
Preparing to unpack .../29-python3-distutils_3.8.6-1_all.deb ...
Unpacking python3-distutils (3.8.6-1) ...
Selecting previously unselected package dh-python.
Preparing to unpack .../30-dh-python_4.20201102_all.deb ...
Unpacking dh-python (4.20201102) ...
Selecting previously unselected package python3-pkg-resources.
Preparing to unpack .../31-python3-pkg-resources_50.3.0-1_all.deb ...
Unpacking python3-pkg-resources (50.3.0-1) ...
Selecting previously unselected package python3-setuptools.
Preparing to unpack .../32-python3-setuptools_50.3.0-1_all.deb ...
Unpacking python3-setuptools (50.3.0-1) ...
Selecting previously unselected package sbuild-build-depends-nanolyse-dummy.
Preparing to unpack .../33-sbuild-build-depends-nanolyse-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-nanolyse-dummy (0.invalid.0) ...
Setting up media-types (1.0.1) ...
Setting up libpipeline1:armhf (1.5.3-1) ...
Setting up libicu67:armhf (67.1-4) ...
Setting up libmagic-mgc (1:5.38-5) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libglib2.0-0:armhf (2.66.3-2) ...
No schema files found: doing nothing.
Setting up libdebhelper-perl (13.2.1) ...
Setting up libmagic1:armhf (1:5.38-5) ...
Setting up gettext-base (0.19.8.1-10) ...
Setting up file (1:5.38-5) ...
Setting up autotools-dev (20180224.1) ...
Setting up libsigsegv2:armhf (2.12-2) ...
Setting up autopoint (0.19.8.1-10) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up mailcap (3.67) ...
Setting up libelf1:armhf (0.182-1) ...
Setting up libxml2:armhf (2.9.10+dfsg-6.3) ...
Setting up libfile-stripnondeterminism-perl (1.9.0-1) ...
Setting up mime-support (3.66) ...
Setting up libtool (2.4.6-14) ...
Setting up m4 (1.4.18-4) ...
Setting up libcroco3:armhf (0.6.13-1) ...
Setting up autoconf (2.69-11.1) ...
Setting up dh-strip-nondeterminism (1.9.0-1) ...
Setting up dwz (0.13-5) ...
Setting up groff-base (1.22.4-5) ...
Setting up libpython3.9-stdlib:armhf (3.9.0-5+rpi1) ...
Setting up libpython3-stdlib:armhf (3.9.0-4) ...
Setting up automake (1:1.16.2-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up gettext (0.19.8.1-10) ...
Setting up man-db (2.9.3-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up python3.9 (3.9.0-5+rpi1) ...
Setting up po-debconf (1.0.21) ...
Setting up python3 (3.9.0-4) ...
Setting up python3-lib2to3 (3.8.6-1) ...
Setting up python3-pkg-resources (50.3.0-1) ...
Setting up python3-distutils (3.8.6-1) ...
Setting up dh-python (4.20201102) ...
Setting up python3-setuptools (50.3.0-1) ...
Setting up dh-autoreconf (19) ...
Setting up debhelper (13.2.1) ...
Setting up sbuild-build-depends-nanolyse-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.31-4+rpi1) ...
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.1-armmp armhf (armv7l)
Toolchain package versions: binutils_2.35.1-2+rpi1 dpkg-dev_1.20.5+rpi1 g++-10_10.2.0-13+rpi1 gcc-10_10.2.0-13+rpi1 libc6-dev_2.31-4+rpi1 libstdc++-10-dev_10.2.0-13+rpi1 libstdc++6_10.2.0-13+rpi1 linux-libc-dev_5.7.10-1+rpi1
Package versions: adduser_3.118 apt_2.1.10 aptitude_0.8.13-2 aptitude-common_0.8.13-2 autoconf_2.69-11.1 automake_1:1.16.2-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.48 bash_5.1~rc1-2 binutils_2.35.1-2+rpi1 binutils-arm-linux-gnueabihf_2.35.1-2+rpi1 binutils-common_2.35.1-2+rpi1 bsdextrautils_2.36-3 bsdutils_1:2.36-3 build-essential_12.8 bzip2_1.0.8-4 coreutils_8.32-4 cpp_4:10.2.0-1+rpi1 cpp-10_10.2.0-13+rpi1 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13.2.1 debianutils_4.11.2 dh-autoreconf_19 dh-python_4.20201102 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3 dirmngr_2.2.20-1 dpkg_1.20.5+rpi1 dpkg-dev_1.20.5+rpi1 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.25.3-1 fdisk_2.36-3 file_1:5.38-5 findutils_4.7.0-1 g++_4:10.2.0-1+rpi1 g++-10_10.2.0-13+rpi1 gcc_4:10.2.0-1+rpi1 gcc-10_10.2.0-13+rpi1 gcc-10-base_10.2.0-13+rpi1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gnupg_2.2.20-1 gnupg-l10n_2.2.20-1 gnupg-utils_2.2.20-1 gpg_2.2.20-1 gpg-agent_2.2.20-1 gpg-wks-client_2.2.20-1 gpg-wks-server_2.2.20-1 gpgconf_2.2.20-1 gpgsm_2.2.20-1 gpgv_2.2.20-1 grep_3.4-1 groff-base_1.22.4-5 gzip_1.10-2 hostname_3.23 init-system-helpers_1.58 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20200821-2 krb5-locales_1.17-10 libacl1_2.2.53-8 libalgorithm-diff-perl_1.200-1 libalgorithm-merge-perl_0.08-3 libapt-pkg6.0_2.1.10 libarchive-zip-perl_1.68-1 libasan6_10.2.0-13+rpi1 libassuan0_2.5.3-7.1 libatomic1_10.2.0-13+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3.1 libaudit1_1:2.8.5-3.1 libbinutils_2.35.1-2+rpi1 libblkid1_2.36-3 libboost-iostreams1.71.0_1.71.0-7 libbz2-1.0_1.0.8-4 libc-bin_2.31-4+rpi1 libc-dev-bin_2.31-4+rpi1 libc6_2.31-4+rpi1 libc6-dev_2.31-4+rpi1 libcap-ng0_0.7.9-2.2 libcap2_1:2.44-1 libcap2-bin_1:2.44-1 libcc1-0_10.2.0-13+rpi1 libcom-err2_1.45.6-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.17-1 libcrypt1_1:4.4.17-1 libctf-nobfd0_2.35.1-2+rpi1 libctf0_2.35.1-2+rpi1 libcwidget4_0.5.18-5 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.254 libdebhelper-perl_13.2.1 libdpkg-perl_1.20.5+rpi1 libelf1_0.182-1 libexpat1_2.2.10-1 libext2fs2_1.45.6-1 libfakeroot_1.25.3-1 libfdisk1_2.36-3 libffi7_3.3-4 libfile-stripnondeterminism-perl_1.9.0-1 libgcc-10-dev_10.2.0-13+rpi1 libgcc-s1_10.2.0-13+rpi1 libgcrypt20_1.8.6-2 libgdbm-compat4_1.18.1-5.1 libgdbm6_1.18.1-5.1 libglib2.0-0_2.66.3-2 libgmp10_2:6.2.0+dfsg-6 libgnutls30_3.6.15-4 libgomp1_10.2.0-13+rpi1 libgpg-error0_1.38-2 libgssapi-krb5-2_1.17-10+b3 libhogweed6_3.6-2 libicu67_67.1-4 libidn2-0_2.3.0-1 libisl22_0.22.1-1 libk5crypto3_1.17-10+b3 libkeyutils1_1.6.1-2 libkrb5-3_1.17-10+b3 libkrb5support0_1.17-10+b3 libksba8_1.4.0-2 libldap-2.4-2_2.4.53+dfsg-1+rpi1 libldap-common_2.4.53+dfsg-1+rpi1 liblocale-gettext-perl_1.07-4+b1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmount1_2.36-3 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libncursesw6_6.2+20200918-1 libnettle8_3.6-2 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libnss-nis_3.1-4 libnss-nisplus_1.3-4 libp11-kit0_0.23.21-2 libpam-cap_1:2.44-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-13 libperl5.32_5.32.0-5 libpipeline1_1.5.3-1 libpython3-stdlib_3.9.0-4 libpython3.9-minimal_3.9.0-5+rpi1 libpython3.9-stdlib_3.9.0-5+rpi1 libreadline8_8.0-4 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.4-1+rpi1 libselinux1_3.1-2 libsemanage-common_3.1-1 libsemanage1_3.1-1 libsepol1_3.1-1 libsigc++-2.0-0v5_2.10.4-2 libsigsegv2_2.12-2 libsmartcols1_2.36-3 libsqlite3-0_3.33.0-1 libss2_1.45.6-1 libssl1.1_1.1.1g-1 libstdc++-10-dev_10.2.0-13+rpi1 libstdc++6_10.2.0-13+rpi1 libsub-override-perl_0.09-2 libsystemd0_246.4-1+rpi1 libtasn1-6_4.16.0-2 libtinfo6_6.2+20200918-1 libtirpc-common_1.2.6-3 libtirpc-dev_1.2.6-3 libtirpc3_1.2.6-3 libtool_2.4.6-14 libubsan1_10.2.0-13+rpi1 libuchardet0_0.0.7-1 libudev1_246.4-1+rpi1 libunistring2_0.9.10-4 libuuid1_2.36-3 libxapian30_1.4.17-1 libxml2_2.9.10+dfsg-6.3 libzstd1_1.4.5+dfsg-4+rpi1 linux-libc-dev_5.7.10-1+rpi1 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0+rpi1 m4_1.4.18-4 mailcap_3.67 make_4.3-4 man-db_2.9.3-2 mawk_1.3.4.20200120-2 media-types_1.0.1 mime-support_3.66 mount_2.36-3 ncurses-base_6.2+20200918-1 ncurses-bin_6.2+20200918-1 netbase_6.2 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.32.0-5 perl-base_5.32.0-5 perl-modules-5.32_5.32.0-5 pinentry-curses_1.1.0-4 po-debconf_1.0.21 python3_3.9.0-4 python3-distutils_3.8.6-1 python3-lib2to3_3.8.6-1 python3-minimal_3.9.0-4 python3-pkg-resources_50.3.0-1 python3-setuptools_50.3.0-1 python3.9_3.9.0-5+rpi1 python3.9-minimal_3.9.0-5+rpi1 raspbian-archive-keyring_20120528.2 readline-common_8.0-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-nanolyse-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-5 tar_1.30+dfsg-7 tzdata_2020d-1 util-linux_2.36-3 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.74wltz8N/trustedkeys.kbx': General error
gpgv: Signature made Fri Oct 23 13:09:02 2020 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./nanolyse_1.2.0-1.dsc
dpkg-source: info: extracting nanolyse in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking nanolyse_1.2.0.orig.tar.gz
dpkg-source: info: unpacking nanolyse_1.2.0-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying path_to_reference.patch
Check disc space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 1.2.0-1+b2
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-e3cfba0f-5cf2-42de-972d-f93342debff5
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package nanolyse
dpkg-buildpackage: info: source version 1.2.0-1+b2
dpkg-buildpackage: info: source distribution bullseye-staging
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --with python3 --buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
I: pybuild base:232: python3.9 setup.py clean
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.9' does not exist -- can't clean it
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary-arch
dh binary-arch --with python3 --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:232: python3.9 setup.py config
running config
dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:232: /usr/bin/python3 setup.py build
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/nanolyse
copying nanolyse/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/nanolyse
copying nanolyse/version.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/nanolyse
copying nanolyse/NanoLyse.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/nanolyse
package init file 'reference/__init__.py' not found (or not a regular file)
running egg_info
creating NanoLyse.egg-info
writing NanoLyse.egg-info/PKG-INFO
writing dependency_links to NanoLyse.egg-info/dependency_links.txt
writing entry points to NanoLyse.egg-info/entry_points.txt
writing requirements to NanoLyse.egg-info/requires.txt
writing top-level names to NanoLyse.egg-info/top_level.txt
writing manifest file 'NanoLyse.egg-info/SOURCES.txt'
reading manifest file 'NanoLyse.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'NanoLyse.egg-info/SOURCES.txt'
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/reference
copying reference/lambda.fasta.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/reference
dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:232: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build; python3.9 -m unittest discover -v
----------------------------------------------------------------------
Ran 0 tests in 0.000s
OK
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
dh_auto_install -a -O--buildsystem=pybuild
I: pybuild base:232: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/nanolyse
running install
running build
running build_py
package init file 'reference/__init__.py' not found (or not a regular file)
running egg_info
writing NanoLyse.egg-info/PKG-INFO
writing dependency_links to NanoLyse.egg-info/dependency_links.txt
writing entry points to NanoLyse.egg-info/entry_points.txt
writing requirements to NanoLyse.egg-info/requires.txt
writing top-level names to NanoLyse.egg-info/top_level.txt
reading manifest file 'NanoLyse.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'NanoLyse.egg-info/SOURCES.txt'
running install_lib
creating /<<PKGBUILDDIR>>/debian/nanolyse/usr
creating /<<PKGBUILDDIR>>/debian/nanolyse/usr/lib
creating /<<PKGBUILDDIR>>/debian/nanolyse/usr/lib/python3.9
creating /<<PKGBUILDDIR>>/debian/nanolyse/usr/lib/python3.9/dist-packages
creating /<<PKGBUILDDIR>>/debian/nanolyse/usr/lib/python3.9/dist-packages/nanolyse
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/nanolyse/__init__.py -> /<<PKGBUILDDIR>>/debian/nanolyse/usr/lib/python3.9/dist-packages/nanolyse
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/nanolyse/version.py -> /<<PKGBUILDDIR>>/debian/nanolyse/usr/lib/python3.9/dist-packages/nanolyse
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/nanolyse/NanoLyse.py -> /<<PKGBUILDDIR>>/debian/nanolyse/usr/lib/python3.9/dist-packages/nanolyse
creating /<<PKGBUILDDIR>>/debian/nanolyse/usr/lib/python3.9/dist-packages/nanolyse/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/nanolyse/__pycache__/__init__.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/nanolyse/usr/lib/python3.9/dist-packages/nanolyse/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/nanolyse/__pycache__/version.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/nanolyse/usr/lib/python3.9/dist-packages/nanolyse/__pycache__
creating /<<PKGBUILDDIR>>/debian/nanolyse/usr/lib/python3.9/dist-packages/reference
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/reference/lambda.fasta.gz -> /<<PKGBUILDDIR>>/debian/nanolyse/usr/lib/python3.9/dist-packages/reference
byte-compiling /<<PKGBUILDDIR>>/debian/nanolyse/usr/lib/python3.9/dist-packages/nanolyse/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/nanolyse/usr/lib/python3.9/dist-packages/nanolyse/version.py to version.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/nanolyse/usr/lib/python3.9/dist-packages/nanolyse/NanoLyse.py to NanoLyse.cpython-39.pyc
running install_egg_info
Copying NanoLyse.egg-info to /<<PKGBUILDDIR>>/debian/nanolyse/usr/lib/python3.9/dist-packages/NanoLyse-1.2.0.egg-info
Skipping SOURCES.txt
running install_scripts
Installing NanoLyse script to /<<PKGBUILDDIR>>/debian/nanolyse/usr/bin
debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install
rm -r debian/nanolyse/usr/lib/python3*/dist-packages/reference
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a -O--buildsystem=pybuild
dh_installchangelogs -a -O--buildsystem=pybuild
dh_installexamples -a -O--buildsystem=pybuild
dh_installman -a -O--buildsystem=pybuild
dh_python3 -a -O--buildsystem=pybuild
dh_installsystemduser -a -O--buildsystem=pybuild
dh_lintian -a -O--buildsystem=pybuild
dh_perl -a -O--buildsystem=pybuild
dh_link -a -O--buildsystem=pybuild
dh_strip_nondeterminism -a -O--buildsystem=pybuild
dh_compress -a -O--buildsystem=pybuild
dh_fixperms -a -O--buildsystem=pybuild
dh_missing -a -O--buildsystem=pybuild
dh_dwz -a -a -O--buildsystem=pybuild
dh_strip -a -a -O--buildsystem=pybuild
dh_makeshlibs -a -a -O--buildsystem=pybuild
dh_shlibdeps -a -a -O--buildsystem=pybuild
dh_installdeb -a -O--buildsystem=pybuild
dh_gencontrol -a -O--buildsystem=pybuild
dh_md5sums -a -O--buildsystem=pybuild
dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'nanolyse' in '../nanolyse_1.2.0-1+b2_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../nanolyse_1.2.0-1+b2_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2020-12-07T21:18:47Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
nanolyse_1.2.0-1+b2_armhf.changes:
----------------------------------
Format: 1.8
Date: Fri, 23 Oct 2020 15:07:15 +0200
Source: nanolyse (1.2.0-1)
Binary: nanolyse
Binary-Only: yes
Architecture: armhf
Version: 1.2.0-1+b2
Distribution: bullseye-staging
Urgency: low
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Raspbian wandboard test autobuilder <root@raspbian.org>
Description:
nanolyse - remove lambda phage reads from a fastq file
Changes:
nanolyse (1.2.0-1+b2) bullseye-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
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Checksums-Sha256:
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Files:
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+------------------------------------------------------------------------------+
| Package contents |
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nanolyse_1.2.0-1+b2_armhf.deb
-----------------------------
new Debian package, version 2.0.
size 25412 bytes: control archive=1724 bytes.
788 bytes, 17 lines control
1637 bytes, 20 lines md5sums
241 bytes, 12 lines * postinst #!/bin/sh
390 bytes, 12 lines * prerm #!/bin/sh
Package: nanolyse
Source: nanolyse (1.2.0-1)
Version: 1.2.0-1+b2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 67
Depends: python3-biopython, python3-mappy, python3:any
Section: science
Priority: optional
Homepage: https://github.com/wdecoster/nanolyse
Description: remove lambda phage reads from a fastq file
NanoLyse is a tool for rapid removal of contaminant DNA, using the
Minimap2 aligner through the mappy Python binding. A typical application
would be the removal of the lambda phage control DNA fragment supplied
by ONT, for which the reference sequence is included in the package.
However, this approach may lead to unwanted loss of reads from regions
highly homologous to the lambda phage genome.
drwxr-xr-x root/root 0 2020-10-23 13:07 ./
drwxr-xr-x root/root 0 2020-10-23 13:07 ./usr/
drwxr-xr-x root/root 0 2020-10-23 13:07 ./usr/bin/
-rwxr-xr-x root/root 963 2020-10-23 13:07 ./usr/bin/NanoLyse
drwxr-xr-x root/root 0 2020-10-23 13:07 ./usr/lib/
drwxr-xr-x root/root 0 2020-10-23 13:07 ./usr/lib/python3/
drwxr-xr-x root/root 0 2020-10-23 13:07 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root 0 2020-10-23 13:07 ./usr/lib/python3/dist-packages/NanoLyse-1.2.0.egg-info/
-rw-r--r-- root/root 3553 2020-10-23 13:07 ./usr/lib/python3/dist-packages/NanoLyse-1.2.0.egg-info/PKG-INFO
-rw-r--r-- root/root 1 2020-10-23 13:07 ./usr/lib/python3/dist-packages/NanoLyse-1.2.0.egg-info/dependency_links.txt
-rw-r--r-- root/root 53 2020-10-23 13:07 ./usr/lib/python3/dist-packages/NanoLyse-1.2.0.egg-info/entry_points.txt
-rw-r--r-- root/root 0 2020-10-23 13:07 ./usr/lib/python3/dist-packages/NanoLyse-1.2.0.egg-info/requires.txt
-rw-r--r-- root/root 19 2020-10-23 13:07 ./usr/lib/python3/dist-packages/NanoLyse-1.2.0.egg-info/top_level.txt
drwxr-xr-x root/root 0 2020-10-23 13:07 ./usr/lib/python3/dist-packages/nanolyse/
-rw-r--r-- root/root 5889 2020-10-23 13:07 ./usr/lib/python3/dist-packages/nanolyse/NanoLyse.py
-rw-r--r-- root/root 33 2020-09-11 11:46 ./usr/lib/python3/dist-packages/nanolyse/__init__.py
-rw-r--r-- root/root 22 2020-09-11 11:46 ./usr/lib/python3/dist-packages/nanolyse/version.py
drwxr-xr-x root/root 0 2020-10-23 13:07 ./usr/share/
drwxr-xr-x root/root 0 2020-10-23 13:07 ./usr/share/doc/
drwxr-xr-x root/root 0 2020-10-23 13:07 ./usr/share/doc/nanolyse/
-rw-r--r-- root/root 278 2020-10-23 13:07 ./usr/share/doc/nanolyse/README.test
-rw-r--r-- root/root 222 2020-10-23 13:07 ./usr/share/doc/nanolyse/changelog.Debian.armhf.gz
-rw-r--r-- root/root 206 2020-10-23 13:07 ./usr/share/doc/nanolyse/changelog.Debian.gz
-rw-r--r-- root/root 1158 2020-10-23 13:07 ./usr/share/doc/nanolyse/copyright
drwxr-xr-x root/root 0 2020-10-23 13:07 ./usr/share/doc/nanolyse/examples/
-rw-r--r-- root/root 258 2020-10-23 13:07 ./usr/share/doc/nanolyse/examples/README
-rw-r--r-- root/root 1463 2020-10-23 13:07 ./usr/share/doc/nanolyse/examples/paired_reads.fastq
-rw-r--r-- root/root 304 2020-10-23 13:07 ./usr/share/doc/nanolyse/run-unit-test
drwxr-xr-x root/root 0 2020-10-23 13:07 ./usr/share/lintian/
drwxr-xr-x root/root 0 2020-10-23 13:07 ./usr/share/lintian/overrides/
-rw-r--r-- root/root 118 2020-10-23 13:07 ./usr/share/lintian/overrides/nanolyse
drwxr-xr-x root/root 0 2020-10-23 13:07 ./usr/share/man/
drwxr-xr-x root/root 0 2020-10-23 13:07 ./usr/share/man/man1/
-rw-r--r-- root/root 617 2020-10-23 13:07 ./usr/share/man/man1/NanoLyse.1.gz
drwxr-xr-x root/root 0 2020-10-23 13:07 ./usr/share/nanolyse/
drwxr-xr-x root/root 0 2020-10-23 13:07 ./usr/share/nanolyse/reference/
-rw-r--r-- root/root 3569 2020-09-11 11:46 ./usr/share/nanolyse/reference/DNA_CS.fasta
-rw-r--r-- root/root 15316 2020-10-23 13:07 ./usr/share/nanolyse/reference/lambda.fasta.gz
+------------------------------------------------------------------------------+
| Post Build |
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+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 456
Build-Time: 52
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 548
Job: nanolyse_1.2.0-1
Machine Architecture: armhf
Package: nanolyse
Package-Time: 653
Source-Version: 1.2.0-1
Space: 456
Status: successful
Version: 1.2.0-1+b2
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Finished at 2020-12-07T21:18:47Z
Build needed 00:10:53, 456k disc space