murasaki →
1.68.6-6 →
armhf → 2016-07-17 11:11:49
sbuild (Debian sbuild) 0.66.0 (04 Oct 2015) on bm-wb-04
+==============================================================================+
| murasaki 1.68.6-6 (armhf) 17 Jul 2016 10:28 |
+==============================================================================+
Package: murasaki
Version: 1.68.6-6
Source Version: 1.68.6-6
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'build/murasaki-fzoZ2X/murasaki-1.68.6' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/murasaki-fzoZ2X' with '<<BUILDDIR>>'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-329aa260-5358-41ad-aa60-0e463bf212e3' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private stretch-staging/main Sources [9169 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf Packages [11.1 MB]
Fetched 20.3 MB in 22s (920 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'murasaki' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/murasaki.git
Please use:
git clone https://anonscm.debian.org/git/debian-med/murasaki.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 317 kB of source archives.
Get:1 http://172.17.0.1/private stretch-staging/main murasaki 1.68.6-6 (dsc) [2213 B]
Get:2 http://172.17.0.1/private stretch-staging/main murasaki 1.68.6-6 (tar) [308 kB]
Get:3 http://172.17.0.1/private stretch-staging/main murasaki 1.68.6-6 (diff) [6920 B]
Fetched 317 kB in 0s (2616 kB/s)
Download complete and in download only mode
Check architectures
-------------------
Check dependencies
------------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-nBrHX6/apt_archive/sbuild-build-depends-core-dummy.deb'.
Warning: apt-key output should not be parsed (stdout is not a terminal)
OK
Get:1 file:/<<BUILDDIR>>/resolver-nBrHX6/apt_archive ./ InRelease
Ign:1 file:/<<BUILDDIR>>/resolver-nBrHX6/apt_archive ./ InRelease
Get:2 file:/<<BUILDDIR>>/resolver-nBrHX6/apt_archive ./ Release [2119 B]
Get:2 file:/<<BUILDDIR>>/resolver-nBrHX6/apt_archive ./ Release [2119 B]
Get:3 file:/<<BUILDDIR>>/resolver-nBrHX6/apt_archive ./ Release.gpg [299 B]
Get:3 file:/<<BUILDDIR>>/resolver-nBrHX6/apt_archive ./ Release.gpg [299 B]
Get:4 file:/<<BUILDDIR>>/resolver-nBrHX6/apt_archive ./ Sources [214 B]
Get:5 file:/<<BUILDDIR>>/resolver-nBrHX6/apt_archive ./ Packages [526 B]
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: file:///<<BUILDDIR>>/resolver-nBrHX6/apt_archive/./Release.gpg: Signature by key 3493EC2B8E6DC280C121C60435506D9A48F77B2E uses weak digest algorithm (SHA1)
Reading package lists...
+------------------------------------------------------------------------------+
| Install core build dependencies (apt-based resolver) |
+------------------------------------------------------------------------------+
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 10 not upgraded.
Need to get 0 B/768 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 file:/<<BUILDDIR>>/resolver-nBrHX6/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [768 B]
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 13670 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
Merged Build-Depends: debhelper (>= 9), libboost-regex-dev, libboost-iostreams-dev, libboost-filesystem-dev, libterm-readkey-perl, libtext-wrapper-perl, libcrypto++-dev, libpstreams-dev, libopenmpi-dev
Filtered Build-Depends: debhelper (>= 9), libboost-regex-dev, libboost-iostreams-dev, libboost-filesystem-dev, libterm-readkey-perl, libtext-wrapper-perl, libcrypto++-dev, libpstreams-dev, libopenmpi-dev
dpkg-deb: building package 'sbuild-build-depends-murasaki-dummy' in '/<<BUILDDIR>>/resolver-h9gnrk/apt_archive/sbuild-build-depends-murasaki-dummy.deb'.
Warning: apt-key output should not be parsed (stdout is not a terminal)
OK
Get:1 file:/<<BUILDDIR>>/resolver-h9gnrk/apt_archive ./ InRelease
Ign:1 file:/<<BUILDDIR>>/resolver-h9gnrk/apt_archive ./ InRelease
Get:2 file:/<<BUILDDIR>>/resolver-h9gnrk/apt_archive ./ Release [2119 B]
Get:2 file:/<<BUILDDIR>>/resolver-h9gnrk/apt_archive ./ Release [2119 B]
Get:3 file:/<<BUILDDIR>>/resolver-h9gnrk/apt_archive ./ Release.gpg [299 B]
Get:3 file:/<<BUILDDIR>>/resolver-h9gnrk/apt_archive ./ Release.gpg [299 B]
Get:4 file:/<<BUILDDIR>>/resolver-h9gnrk/apt_archive ./ Sources [280 B]
Get:5 file:/<<BUILDDIR>>/resolver-h9gnrk/apt_archive ./ Packages [600 B]
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: file:///<<BUILDDIR>>/resolver-h9gnrk/apt_archive/./Release.gpg: Signature by key 3493EC2B8E6DC280C121C60435506D9A48F77B2E uses weak digest algorithm (SHA1)
Reading package lists...
+------------------------------------------------------------------------------+
| Install murasaki build dependencies (apt-based resolver) |
+------------------------------------------------------------------------------+
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base
icu-devtools intltool-debian libarchive-zip-perl libboost-filesystem-dev
libboost-filesystem1.58-dev libboost-filesystem1.58.0 libboost-iostreams-dev
libboost-iostreams1.58-dev libboost-iostreams1.58.0 libboost-regex-dev
libboost-regex1.58-dev libboost-regex1.58.0 libboost-system1.58-dev
libboost-system1.58.0 libboost1.58-dev libbsd0 libcroco3 libcrypto++-dev
libcrypto++6 libffi6 libfile-stripnondeterminism-perl libgfortran3
libglib2.0-0 libhwloc-dev libhwloc-plugins libhwloc5 libibverbs-dev
libibverbs1 libicu-dev libicu55 libltdl-dev libltdl7 libmagic1 libnl-3-200
libnl-route-3-200 libopenmpi-dev libopenmpi1.10 libpciaccess0 libpipeline1
libpstreams-dev libsigsegv2 libterm-readkey-perl libtext-wrapper-perl
libtool libunistring0 libxml2 m4 man-db ocl-icd-libopencl1 openmpi-common
po-debconf
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff
libboost1.58-doc libboost-atomic1.58-dev libboost-chrono1.58-dev
libboost-context1.58-dev libboost-coroutine1.58-dev
libboost-date-time1.58-dev libboost-exception1.58-dev libboost-graph1.58-dev
libboost-graph-parallel1.58-dev libboost-locale1.58-dev libboost-log1.58-dev
libboost-math1.58-dev libboost-mpi1.58-dev libboost-mpi-python1.58-dev
libboost-program-options1.58-dev libboost-python1.58-dev
libboost-random1.58-dev libboost-serialization1.58-dev
libboost-signals1.58-dev libboost-test1.58-dev libboost-thread1.58-dev
libboost-timer1.58-dev libboost-wave1.58-dev libboost1.58-tools-dev
libmpfrc++-dev libntl-dev libhwloc-contrib-plugins icu-doc libtool-doc
opennmpi-doc pciutils gfortran | fortran95-compiler gcj-jdk less www-browser
opencl-icd libmail-box-perl
Recommended packages:
curl | wget | lynx-cur libglib2.0-data shared-mime-info xdg-user-dirs
openmpi-bin xml-core libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base
icu-devtools intltool-debian libarchive-zip-perl libboost-filesystem-dev
libboost-filesystem1.58-dev libboost-filesystem1.58.0 libboost-iostreams-dev
libboost-iostreams1.58-dev libboost-iostreams1.58.0 libboost-regex-dev
libboost-regex1.58-dev libboost-regex1.58.0 libboost-system1.58-dev
libboost-system1.58.0 libboost1.58-dev libbsd0 libcroco3 libcrypto++-dev
libcrypto++6 libffi6 libfile-stripnondeterminism-perl libgfortran3
libglib2.0-0 libhwloc-dev libhwloc-plugins libhwloc5 libibverbs-dev
libibverbs1 libicu-dev libicu55 libltdl-dev libltdl7 libmagic1 libnl-3-200
libnl-route-3-200 libopenmpi-dev libopenmpi1.10 libpciaccess0 libpipeline1
libpstreams-dev libsigsegv2 libterm-readkey-perl libtext-wrapper-perl
libtool libunistring0 libxml2 m4 man-db ocl-icd-libopencl1 openmpi-common
po-debconf sbuild-build-depends-murasaki-dummy
0 upgraded, 64 newly installed, 0 to remove and 10 not upgraded.
Need to get 29.6 MB/40.4 MB of archives.
After this operation, 248 MB of additional disk space will be used.
Get:1 file:/<<BUILDDIR>>/resolver-h9gnrk/apt_archive ./ sbuild-build-depends-murasaki-dummy 0.invalid.0 [840 B]
Get:2 http://172.17.0.1/private stretch-staging/main armhf groff-base armhf 1.22.3-8 [1087 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf libbsd0 armhf 0.8.3-1 [89.0 kB]
Get:4 http://172.17.0.1/private stretch-staging/main armhf bsdmainutils armhf 9.0.10 [177 kB]
Get:5 http://172.17.0.1/private stretch-staging/main armhf libpipeline1 armhf 1.4.1-2 [23.7 kB]
Get:6 http://172.17.0.1/private stretch-staging/main armhf man-db armhf 2.7.5-1 [975 kB]
Get:7 http://172.17.0.1/private stretch-staging/main armhf libboost-iostreams1.58.0 armhf 1.58.0+dfsg-5.1 [48.5 kB]
Get:8 http://172.17.0.1/private stretch-staging/main armhf libmagic1 armhf 1:5.28-2 [269 kB]
Get:9 http://172.17.0.1/private stretch-staging/main armhf file armhf 1:5.28-2 [62.4 kB]
Get:10 http://172.17.0.1/private stretch-staging/main armhf gettext-base armhf 0.19.8.1-1 [117 kB]
Get:11 http://172.17.0.1/private stretch-staging/main armhf libsigsegv2 armhf 2.10-5 [28.4 kB]
Get:12 http://172.17.0.1/private stretch-staging/main armhf m4 armhf 1.4.17-5 [239 kB]
Get:13 http://172.17.0.1/private stretch-staging/main armhf autoconf all 2.69-10 [338 kB]
Get:14 http://172.17.0.1/private stretch-staging/main armhf autotools-dev all 20160430.1 [72.6 kB]
Get:15 http://172.17.0.1/private stretch-staging/main armhf automake all 1:1.15-4 [735 kB]
Get:16 http://172.17.0.1/private stretch-staging/main armhf autopoint all 0.19.8.1-1 [433 kB]
Get:17 http://172.17.0.1/private stretch-staging/main armhf libcroco3 armhf 0.6.11-1 [131 kB]
Get:18 http://172.17.0.1/private stretch-staging/main armhf libunistring0 armhf 0.9.6+really0.9.3-0.1 [252 kB]
Get:19 http://172.17.0.1/private stretch-staging/main armhf gettext armhf 0.19.8.1-1 [1433 kB]
Get:20 http://172.17.0.1/private stretch-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:21 http://172.17.0.1/private stretch-staging/main armhf po-debconf all 1.0.19 [249 kB]
Get:22 http://172.17.0.1/private stretch-staging/main armhf libarchive-zip-perl all 1.57-1 [95.1 kB]
Get:23 http://172.17.0.1/private stretch-staging/main armhf libfile-stripnondeterminism-perl all 0.019-1 [12.2 kB]
Get:24 http://172.17.0.1/private stretch-staging/main armhf dh-strip-nondeterminism all 0.019-1 [7352 B]
Get:25 http://172.17.0.1/private stretch-staging/main armhf libtool all 2.4.6-0.1 [200 kB]
Get:26 http://172.17.0.1/private stretch-staging/main armhf dh-autoreconf all 12 [15.8 kB]
Get:27 http://172.17.0.1/private stretch-staging/main armhf debhelper all 9.20160403 [800 kB]
Get:28 http://172.17.0.1/private stretch-staging/main armhf icu-devtools armhf 55.1-7 [163 kB]
Get:29 http://172.17.0.1/private stretch-staging/main armhf libboost1.58-dev armhf 1.58.0+dfsg-5.1 [6230 kB]
Get:30 http://172.17.0.1/private stretch-staging/main armhf libboost-system1.58.0 armhf 1.58.0+dfsg-5.1 [30.7 kB]
Get:31 http://172.17.0.1/private stretch-staging/main armhf libboost-filesystem1.58.0 armhf 1.58.0+dfsg-5.1 [57.1 kB]
Get:32 http://172.17.0.1/private stretch-staging/main armhf libboost-system1.58-dev armhf 1.58.0+dfsg-5.1 [31.7 kB]
Get:33 http://172.17.0.1/private stretch-staging/main armhf libboost-filesystem1.58-dev armhf 1.58.0+dfsg-5.1 [66.1 kB]
Get:34 http://172.17.0.1/private stretch-staging/main armhf libboost-filesystem-dev armhf 1.58.0.2 [3228 B]
Get:35 http://172.17.0.1/private stretch-staging/main armhf libboost-regex1.58.0 armhf 1.58.0+dfsg-5.1 [226 kB]
Get:36 http://172.17.0.1/private stretch-staging/main armhf libicu-dev armhf 55.1-7 [8339 kB]
Get:37 http://172.17.0.1/private stretch-staging/main armhf libboost-regex1.58-dev armhf 1.58.0+dfsg-5.1 [312 kB]
Get:38 http://172.17.0.1/private stretch-staging/main armhf libboost-iostreams1.58-dev armhf 1.58.0+dfsg-5.1 [58.3 kB]
Get:39 http://172.17.0.1/private stretch-staging/main armhf libboost-iostreams-dev armhf 1.58.0.2 [3190 B]
Get:40 http://172.17.0.1/private stretch-staging/main armhf libboost-regex-dev armhf 1.58.0.2 [3458 B]
Get:41 http://172.17.0.1/private stretch-staging/main armhf libcrypto++6 armhf 5.6.3-6 [855 kB]
Get:42 http://172.17.0.1/private stretch-staging/main armhf libcrypto++-dev armhf 5.6.3-6 [1602 kB]
Get:43 http://172.17.0.1/private stretch-staging/main armhf libgfortran3 armhf 6.1.1-1+rpi1 [166 kB]
Get:44 http://172.17.0.1/private stretch-staging/main armhf libltdl7 armhf 2.4.6-0.1 [42.8 kB]
Get:45 http://172.17.0.1/private stretch-staging/main armhf libltdl-dev armhf 2.4.6-0.1 [159 kB]
Get:46 http://172.17.0.1/private stretch-staging/main armhf libnl-3-200 armhf 3.2.27-1 [53.4 kB]
Get:47 http://172.17.0.1/private stretch-staging/main armhf libnl-route-3-200 armhf 3.2.27-1 [111 kB]
Get:48 http://172.17.0.1/private stretch-staging/main armhf libpciaccess0 armhf 0.13.4-1 [47.4 kB]
Get:49 http://172.17.0.1/private stretch-staging/main armhf libpstreams-dev all 0.8.0-2 [125 kB]
Get:50 http://172.17.0.1/private stretch-staging/main armhf libterm-readkey-perl armhf 2.33-1+b1 [29.4 kB]
Get:51 http://172.17.0.1/private stretch-staging/main armhf libtext-wrapper-perl all 1.05-2 [11.0 kB]
Get:52 http://172.17.0.1/private stretch-staging/main armhf libhwloc5 armhf 1.11.3-2+rpi1 [82.5 kB]
Get:53 http://172.17.0.1/private stretch-staging/main armhf libhwloc-dev armhf 1.11.3-2+rpi1 [135 kB]
Get:54 http://172.17.0.1/private stretch-staging/main armhf ocl-icd-libopencl1 armhf 2.2.9-1 [34.6 kB]
Get:55 http://172.17.0.1/private stretch-staging/main armhf libhwloc-plugins armhf 1.11.3-2+rpi1 [14.8 kB]
Get:56 http://172.17.0.1/private stretch-staging/main armhf libibverbs1 armhf 1.2.0-1 [31.7 kB]
Get:57 http://172.17.0.1/private stretch-staging/main armhf libibverbs-dev armhf 1.2.0-1 [88.2 kB]
Get:58 http://172.17.0.1/private stretch-staging/main armhf libopenmpi1.10 armhf 1.10.3-3+rpi1 [1837 kB]
Get:59 http://172.17.0.1/private stretch-staging/main armhf openmpi-common all 1.10.3-3+rpi1 [143 kB]
Get:60 http://172.17.0.1/private stretch-staging/main armhf libopenmpi-dev armhf 1.10.3-3+rpi1 [627 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 29.6 MB in 4s (6767 kB/s)
Selecting previously unselected package groff-base.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 13670 files and directories currently installed.)
Preparing to unpack .../groff-base_1.22.3-8_armhf.deb ...
Unpacking groff-base (1.22.3-8) ...
Selecting previously unselected package libbsd0:armhf.
Preparing to unpack .../libbsd0_0.8.3-1_armhf.deb ...
Unpacking libbsd0:armhf (0.8.3-1) ...
Selecting previously unselected package bsdmainutils.
Preparing to unpack .../bsdmainutils_9.0.10_armhf.deb ...
Unpacking bsdmainutils (9.0.10) ...
Selecting previously unselected package libpipeline1:armhf.
Preparing to unpack .../libpipeline1_1.4.1-2_armhf.deb ...
Unpacking libpipeline1:armhf (1.4.1-2) ...
Selecting previously unselected package man-db.
Preparing to unpack .../man-db_2.7.5-1_armhf.deb ...
Unpacking man-db (2.7.5-1) ...
Selecting previously unselected package libboost-iostreams1.58.0:armhf.
Preparing to unpack .../libboost-iostreams1.58.0_1.58.0+dfsg-5.1_armhf.deb ...
Unpacking libboost-iostreams1.58.0:armhf (1.58.0+dfsg-5.1) ...
Selecting previously unselected package libmagic1:armhf.
Preparing to unpack .../libmagic1_1%3a5.28-2_armhf.deb ...
Unpacking libmagic1:armhf (1:5.28-2) ...
Selecting previously unselected package file.
Preparing to unpack .../file_1%3a5.28-2_armhf.deb ...
Unpacking file (1:5.28-2) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../gettext-base_0.19.8.1-1_armhf.deb ...
Unpacking gettext-base (0.19.8.1-1) ...
Selecting previously unselected package libicu55:armhf.
Preparing to unpack .../libicu55_55.1-7_armhf.deb ...
Unpacking libicu55:armhf (55.1-7) ...
Selecting previously unselected package libxml2:armhf.
Preparing to unpack .../libxml2_2.9.3+dfsg1-1.2_armhf.deb ...
Unpacking libxml2:armhf (2.9.3+dfsg1-1.2) ...
Selecting previously unselected package libsigsegv2:armhf.
Preparing to unpack .../libsigsegv2_2.10-5_armhf.deb ...
Unpacking libsigsegv2:armhf (2.10-5) ...
Selecting previously unselected package m4.
Preparing to unpack .../archives/m4_1.4.17-5_armhf.deb ...
Unpacking m4 (1.4.17-5) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../autoconf_2.69-10_all.deb ...
Unpacking autoconf (2.69-10) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../autotools-dev_20160430.1_all.deb ...
Unpacking autotools-dev (20160430.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../automake_1%3a1.15-4_all.deb ...
Unpacking automake (1:1.15-4) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../autopoint_0.19.8.1-1_all.deb ...
Unpacking autopoint (0.19.8.1-1) ...
Selecting previously unselected package libffi6:armhf.
Preparing to unpack .../libffi6_3.2.1-4_armhf.deb ...
Unpacking libffi6:armhf (3.2.1-4) ...
Selecting previously unselected package libglib2.0-0:armhf.
Preparing to unpack .../libglib2.0-0_2.48.1-1_armhf.deb ...
Unpacking libglib2.0-0:armhf (2.48.1-1) ...
Selecting previously unselected package libcroco3:armhf.
Preparing to unpack .../libcroco3_0.6.11-1_armhf.deb ...
Unpacking libcroco3:armhf (0.6.11-1) ...
Selecting previously unselected package libunistring0:armhf.
Preparing to unpack .../libunistring0_0.9.6+really0.9.3-0.1_armhf.deb ...
Unpacking libunistring0:armhf (0.9.6+really0.9.3-0.1) ...
Selecting previously unselected package gettext.
Preparing to unpack .../gettext_0.19.8.1-1_armhf.deb ...
Unpacking gettext (0.19.8.1-1) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../intltool-debian_0.35.0+20060710.4_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.4) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../po-debconf_1.0.19_all.deb ...
Unpacking po-debconf (1.0.19) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../libarchive-zip-perl_1.57-1_all.deb ...
Unpacking libarchive-zip-perl (1.57-1) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../libfile-stripnondeterminism-perl_0.019-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (0.019-1) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../dh-strip-nondeterminism_0.019-1_all.deb ...
Unpacking dh-strip-nondeterminism (0.019-1) ...
Selecting previously unselected package libtool.
Preparing to unpack .../libtool_2.4.6-0.1_all.deb ...
Unpacking libtool (2.4.6-0.1) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../dh-autoreconf_12_all.deb ...
Unpacking dh-autoreconf (12) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../debhelper_9.20160403_all.deb ...
Unpacking debhelper (9.20160403) ...
Selecting previously unselected package icu-devtools.
Preparing to unpack .../icu-devtools_55.1-7_armhf.deb ...
Unpacking icu-devtools (55.1-7) ...
Selecting previously unselected package libboost1.58-dev:armhf.
Preparing to unpack .../libboost1.58-dev_1.58.0+dfsg-5.1_armhf.deb ...
Unpacking libboost1.58-dev:armhf (1.58.0+dfsg-5.1) ...
Selecting previously unselected package libboost-system1.58.0:armhf.
Preparing to unpack .../libboost-system1.58.0_1.58.0+dfsg-5.1_armhf.deb ...
Unpacking libboost-system1.58.0:armhf (1.58.0+dfsg-5.1) ...
Selecting previously unselected package libboost-filesystem1.58.0:armhf.
Preparing to unpack .../libboost-filesystem1.58.0_1.58.0+dfsg-5.1_armhf.deb ...
Unpacking libboost-filesystem1.58.0:armhf (1.58.0+dfsg-5.1) ...
Selecting previously unselected package libboost-system1.58-dev:armhf.
Preparing to unpack .../libboost-system1.58-dev_1.58.0+dfsg-5.1_armhf.deb ...
Unpacking libboost-system1.58-dev:armhf (1.58.0+dfsg-5.1) ...
Selecting previously unselected package libboost-filesystem1.58-dev:armhf.
Preparing to unpack .../libboost-filesystem1.58-dev_1.58.0+dfsg-5.1_armhf.deb ...
Unpacking libboost-filesystem1.58-dev:armhf (1.58.0+dfsg-5.1) ...
Selecting previously unselected package libboost-filesystem-dev:armhf.
Preparing to unpack .../libboost-filesystem-dev_1.58.0.2_armhf.deb ...
Unpacking libboost-filesystem-dev:armhf (1.58.0.2) ...
Selecting previously unselected package libboost-regex1.58.0:armhf.
Preparing to unpack .../libboost-regex1.58.0_1.58.0+dfsg-5.1_armhf.deb ...
Unpacking libboost-regex1.58.0:armhf (1.58.0+dfsg-5.1) ...
Selecting previously unselected package libicu-dev:armhf.
Preparing to unpack .../libicu-dev_55.1-7_armhf.deb ...
Unpacking libicu-dev:armhf (55.1-7) ...
Selecting previously unselected package libboost-regex1.58-dev:armhf.
Preparing to unpack .../libboost-regex1.58-dev_1.58.0+dfsg-5.1_armhf.deb ...
Unpacking libboost-regex1.58-dev:armhf (1.58.0+dfsg-5.1) ...
Selecting previously unselected package libboost-iostreams1.58-dev:armhf.
Preparing to unpack .../libboost-iostreams1.58-dev_1.58.0+dfsg-5.1_armhf.deb ...
Unpacking libboost-iostreams1.58-dev:armhf (1.58.0+dfsg-5.1) ...
Selecting previously unselected package libboost-iostreams-dev:armhf.
Preparing to unpack .../libboost-iostreams-dev_1.58.0.2_armhf.deb ...
Unpacking libboost-iostreams-dev:armhf (1.58.0.2) ...
Selecting previously unselected package libboost-regex-dev:armhf.
Preparing to unpack .../libboost-regex-dev_1.58.0.2_armhf.deb ...
Unpacking libboost-regex-dev:armhf (1.58.0.2) ...
Selecting previously unselected package libcrypto++6.
Preparing to unpack .../libcrypto++6_5.6.3-6_armhf.deb ...
Unpacking libcrypto++6 (5.6.3-6) ...
Selecting previously unselected package libcrypto++-dev.
Preparing to unpack .../libcrypto++-dev_5.6.3-6_armhf.deb ...
Unpacking libcrypto++-dev (5.6.3-6) ...
Selecting previously unselected package libgfortran3:armhf.
Preparing to unpack .../libgfortran3_6.1.1-1+rpi1_armhf.deb ...
Unpacking libgfortran3:armhf (6.1.1-1+rpi1) ...
Selecting previously unselected package libltdl7:armhf.
Preparing to unpack .../libltdl7_2.4.6-0.1_armhf.deb ...
Unpacking libltdl7:armhf (2.4.6-0.1) ...
Selecting previously unselected package libltdl-dev:armhf.
Preparing to unpack .../libltdl-dev_2.4.6-0.1_armhf.deb ...
Unpacking libltdl-dev:armhf (2.4.6-0.1) ...
Selecting previously unselected package libnl-3-200:armhf.
Preparing to unpack .../libnl-3-200_3.2.27-1_armhf.deb ...
Unpacking libnl-3-200:armhf (3.2.27-1) ...
Selecting previously unselected package libnl-route-3-200:armhf.
Preparing to unpack .../libnl-route-3-200_3.2.27-1_armhf.deb ...
Unpacking libnl-route-3-200:armhf (3.2.27-1) ...
Selecting previously unselected package libpciaccess0:armhf.
Preparing to unpack .../libpciaccess0_0.13.4-1_armhf.deb ...
Unpacking libpciaccess0:armhf (0.13.4-1) ...
Selecting previously unselected package libpstreams-dev.
Preparing to unpack .../libpstreams-dev_0.8.0-2_all.deb ...
Unpacking libpstreams-dev (0.8.0-2) ...
Selecting previously unselected package libterm-readkey-perl.
Preparing to unpack .../libterm-readkey-perl_2.33-1+b1_armhf.deb ...
Unpacking libterm-readkey-perl (2.33-1+b1) ...
Selecting previously unselected package libtext-wrapper-perl.
Preparing to unpack .../libtext-wrapper-perl_1.05-2_all.deb ...
Unpacking libtext-wrapper-perl (1.05-2) ...
Selecting previously unselected package libhwloc5:armhf.
Preparing to unpack .../libhwloc5_1.11.3-2+rpi1_armhf.deb ...
Unpacking libhwloc5:armhf (1.11.3-2+rpi1) ...
Selecting previously unselected package libhwloc-dev:armhf.
Preparing to unpack .../libhwloc-dev_1.11.3-2+rpi1_armhf.deb ...
Unpacking libhwloc-dev:armhf (1.11.3-2+rpi1) ...
Selecting previously unselected package ocl-icd-libopencl1:armhf.
Preparing to unpack .../ocl-icd-libopencl1_2.2.9-1_armhf.deb ...
Unpacking ocl-icd-libopencl1:armhf (2.2.9-1) ...
Selecting previously unselected package libhwloc-plugins.
Preparing to unpack .../libhwloc-plugins_1.11.3-2+rpi1_armhf.deb ...
Unpacking libhwloc-plugins (1.11.3-2+rpi1) ...
Selecting previously unselected package libibverbs1.
Preparing to unpack .../libibverbs1_1.2.0-1_armhf.deb ...
Unpacking libibverbs1 (1.2.0-1) ...
Selecting previously unselected package libibverbs-dev.
Preparing to unpack .../libibverbs-dev_1.2.0-1_armhf.deb ...
Unpacking libibverbs-dev (1.2.0-1) ...
Selecting previously unselected package libopenmpi1.10.
Preparing to unpack .../libopenmpi1.10_1.10.3-3+rpi1_armhf.deb ...
Unpacking libopenmpi1.10 (1.10.3-3+rpi1) ...
Selecting previously unselected package openmpi-common.
Preparing to unpack .../openmpi-common_1.10.3-3+rpi1_all.deb ...
Unpacking openmpi-common (1.10.3-3+rpi1) ...
Selecting previously unselected package libopenmpi-dev.
Preparing to unpack .../libopenmpi-dev_1.10.3-3+rpi1_armhf.deb ...
Unpacking libopenmpi-dev (1.10.3-3+rpi1) ...
Selecting previously unselected package sbuild-build-depends-murasaki-dummy.
Preparing to unpack .../sbuild-build-depends-murasaki-dummy.deb ...
Unpacking sbuild-build-depends-murasaki-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.23-1+rpi1) ...
Setting up libicu55:armhf (55.1-7) ...
Setting up libpstreams-dev (0.8.0-2) ...
Setting up libarchive-zip-perl (1.57-1) ...
Setting up libcrypto++6 (5.6.3-6) ...
Setting up libsigsegv2:armhf (2.10-5) ...
Setting up libcrypto++-dev (5.6.3-6) ...
Setting up libboost-system1.58.0:armhf (1.58.0+dfsg-5.1) ...
Setting up libgfortran3:armhf (6.1.1-1+rpi1) ...
Setting up groff-base (1.22.3-8) ...
Setting up libboost1.58-dev:armhf (1.58.0+dfsg-5.1) ...
Setting up gettext-base (0.19.8.1-1) ...
Setting up libpipeline1:armhf (1.4.1-2) ...
Setting up m4 (1.4.17-5) ...
Setting up libbsd0:armhf (0.8.3-1) ...
Setting up libxml2:armhf (2.9.3+dfsg1-1.2) ...
Setting up libterm-readkey-perl (2.33-1+b1) ...
Setting up libmagic1:armhf (1:5.28-2) ...
Setting up libboost-regex1.58.0:armhf (1.58.0+dfsg-5.1) ...
Setting up libtext-wrapper-perl (1.05-2) ...
Setting up openmpi-common (1.10.3-3+rpi1) ...
Setting up autotools-dev (20160430.1) ...
Setting up libunistring0:armhf (0.9.6+really0.9.3-0.1) ...
Setting up libltdl7:armhf (2.4.6-0.1) ...
Setting up libboost-iostreams1.58.0:armhf (1.58.0+dfsg-5.1) ...
Setting up libpciaccess0:armhf (0.13.4-1) ...
Setting up libffi6:armhf (3.2.1-4) ...
Setting up icu-devtools (55.1-7) ...
Setting up ocl-icd-libopencl1:armhf (2.2.9-1) ...
Setting up bsdmainutils (9.0.10) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libnl-3-200:armhf (3.2.27-1) ...
Setting up libboost-filesystem1.58.0:armhf (1.58.0+dfsg-5.1) ...
Setting up autopoint (0.19.8.1-1) ...
Setting up libfile-stripnondeterminism-perl (0.019-1) ...
Setting up libltdl-dev:armhf (2.4.6-0.1) ...
Setting up libboost-system1.58-dev:armhf (1.58.0+dfsg-5.1) ...
Setting up libglib2.0-0:armhf (2.48.1-1) ...
No schema files found: doing nothing.
Setting up libnl-route-3-200:armhf (3.2.27-1) ...
Setting up autoconf (2.69-10) ...
Setting up libicu-dev:armhf (55.1-7) ...
Setting up file (1:5.28-2) ...
Setting up libhwloc5:armhf (1.11.3-2+rpi1) ...
Setting up libcroco3:armhf (0.6.11-1) ...
Setting up libhwloc-plugins (1.11.3-2+rpi1) ...
Setting up libboost-filesystem1.58-dev:armhf (1.58.0+dfsg-5.1) ...
Setting up automake (1:1.15-4) ...
update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode
Setting up libboost-regex1.58-dev:armhf (1.58.0+dfsg-5.1) ...
Setting up man-db (2.7.5-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libboost-regex-dev:armhf (1.58.0.2) ...
Setting up libboost-iostreams1.58-dev:armhf (1.58.0+dfsg-5.1) ...
Setting up libtool (2.4.6-0.1) ...
Setting up libibverbs1 (1.2.0-1) ...
Setting up libhwloc-dev:armhf (1.11.3-2+rpi1) ...
Setting up gettext (0.19.8.1-1) ...
Setting up libboost-filesystem-dev:armhf (1.58.0.2) ...
Setting up libopenmpi1.10 (1.10.3-3+rpi1) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up libboost-iostreams-dev:armhf (1.58.0.2) ...
Setting up libibverbs-dev (1.2.0-1) ...
Setting up po-debconf (1.0.19) ...
Setting up libopenmpi-dev (1.10.3-3+rpi1) ...
update-alternatives: using /usr/lib/openmpi/include to provide /usr/include/mpi (mpi) in auto mode
Setting up dh-autoreconf (12) ...
Setting up debhelper (9.20160403) ...
Setting up sbuild-build-depends-murasaki-dummy (0.invalid.0) ...
Setting up dh-strip-nondeterminism (0.019-1) ...
Processing triggers for libc-bin (2.23-1+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 3.19.0-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.26.1-1 dpkg-dev_1.18.7 g++-5_5.4.0-4 gcc-5_5.4.0-4 libc6-dev_2.23-1+rpi1 libstdc++-4.9-dev_4.9.3-14 libstdc++-5-dev_5.4.0-4 libstdc++6_6.1.1-1+rpi1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: acl_2.2.52-3 adduser_3.115 apt_1.3~pre2 autoconf_2.69-10 automake_1:1.15-4 autopoint_0.19.8.1-1 autotools-dev_20160430.1 base-files_9.6+rpi1 base-passwd_3.5.39 bash_4.3-15 binutils_2.26.1-1 bsdmainutils_9.0.10 bsdutils_1:2.28-5 build-essential_11.7 bzip2_1.0.6-8 coreutils_8.25-2 cpio_2.11+dfsg-5 cpp_4:5.3.1-3 cpp-5_5.4.0-4 dash_0.5.8-2.3 debconf_1.5.59 debfoster_2.7-2 debhelper_9.20160403 debianutils_4.8 dh-autoreconf_12 dh-strip-nondeterminism_0.019-1 diffutils_1:3.3-3 dmsetup_2:1.02.127-1 dpkg_1.18.7 dpkg-dev_1.18.7 e2fslibs_1.43.1-1 e2fsprogs_1.43.1-1 fakeroot_1.21-1 file_1:5.28-2 findutils_4.6.0+git+20160517-5 fuse2fs_1.43.1-1 g++_4:5.3.1-3 g++-5_5.4.0-4 gcc_4:5.3.1-3 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-14 gcc-5_5.4.0-4 gcc-5-base_5.4.0-4 gcc-6-base_6.1.1-1+rpi1 gettext_0.19.8.1-1 gettext-base_0.19.8.1-1 gnupg_1.4.20-6 gpgv_1.4.20-6 grep_2.25-6 groff-base_1.22.3-8 gzip_1.6-5 hostname_3.18 icu-devtools_55.1-7 init_1.36 init-system-helpers_1.36 initscripts_2.88dsf-59.7 insserv_1.14.0-5.3 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-9+rpi1 kmod_22-1.1 libacl1_2.2.52-3 libapparmor1_2.10.95-4 libapt-pkg4.12_1.0.9.10 libapt-pkg5.0_1.3~pre2 libarchive-zip-perl_1.57-1 libasan1_4.9.3-14 libasan2_5.4.0-4 libatomic1_6.1.1-1+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.5.2-1+rpi1 libaudit1_1:2.5.2-1+rpi1 libblkid1_2.28-5 libboost-filesystem-dev_1.58.0.2 libboost-filesystem1.58-dev_1.58.0+dfsg-5.1 libboost-filesystem1.58.0_1.58.0+dfsg-5.1 libboost-iostreams-dev_1.58.0.2 libboost-iostreams1.58-dev_1.58.0+dfsg-5.1 libboost-iostreams1.58.0_1.58.0+dfsg-5.1 libboost-regex-dev_1.58.0.2 libboost-regex1.58-dev_1.58.0+dfsg-5.1 libboost-regex1.58.0_1.58.0+dfsg-5.1 libboost-system1.58-dev_1.58.0+dfsg-5.1 libboost-system1.58.0_1.58.0+dfsg-5.1 libboost1.58-dev_1.58.0+dfsg-5.1 libbsd0_0.8.3-1 libbz2-1.0_1.0.6-8 libc-bin_2.23-1+rpi1 libc-dev-bin_2.23-1+rpi1 libc6_2.23-1+rpi1 libc6-dev_2.23-1+rpi1 libcap2_1:2.25-1 libcap2-bin_1:2.25-1 libcc1-0_6.1.1-1+rpi1 libcomerr2_1.43.1-1 libcroco3_0.6.11-1 libcrypto++-dev_5.6.3-6 libcrypto++6_5.6.3-6 libcryptsetup4_2:1.7.0-2 libdb5.3_5.3.28-11 libdbus-1-3_1.10.8-1 libdebconfclient0_0.213 libdevmapper1.02.1_2:1.02.127-1 libdpkg-perl_1.18.7 libdrm2_2.4.68-1 libfakeroot_1.21-1 libfdisk1_2.28-5 libffi6_3.2.1-4 libfile-stripnondeterminism-perl_0.019-1 libfuse2_2.9.7-1 libgc1c2_1:7.4.2-8 libgcc-4.9-dev_4.9.3-14 libgcc-5-dev_5.4.0-4 libgcc1_1:6.1.1-1+rpi1 libgcrypt20_1.7.1-2 libgdbm3_1.8.3-14 libgfortran3_6.1.1-1+rpi1 libglib2.0-0_2.48.1-1 libgmp10_2:6.1.1+dfsg-1 libgomp1_6.1.1-1+rpi1 libgpg-error0_1.23-1 libhwloc-dev_1.11.3-2+rpi1 libhwloc-plugins_1.11.3-2+rpi1 libhwloc5_1.11.3-2+rpi1 libibverbs-dev_1.2.0-1 libibverbs1_1.2.0-1 libicu-dev_55.1-7 libicu55_55.1-7 libidn11_1.32-3.1 libisl15_0.17.1-1 libklibc_2.0.4-9+rpi1 libkmod2_22-1.1 libltdl-dev_2.4.6-0.1 libltdl7_2.4.6-0.1 liblz4-1_0.0~r131-2 liblzma5_5.1.1alpha+20120614-2.1 libmagic1_1:5.28-2 libmount1_2.28-5 libmpc3_1.0.3-1 libmpfr4_3.1.4-2 libncurses5_6.0+20160319-2 libncursesw5_6.0+20160319-2 libnl-3-200_3.2.27-1 libnl-route-3-200_3.2.27-1 libopenmpi-dev_1.10.3-3+rpi1 libopenmpi1.10_1.10.3-3+rpi1 libpam-modules_1.1.8-3.3 libpam-modules-bin_1.1.8-3.3 libpam-runtime_1.1.8-3.3 libpam0g_1.1.8-3.3 libpciaccess0_0.13.4-1 libpcre3_2:8.38-3.1 libperl5.22_5.22.2-2 libpipeline1_1.4.1-2 libpng12-0_1.2.54-6 libprocps3_2:3.3.9-9 libprocps5_2:3.3.11-3 libpstreams-dev_0.8.0-2 libreadline6_6.3-8+b3 libseccomp2_2.3.1-2 libselinux1_2.5-3 libsemanage-common_2.5-1 libsemanage1_2.5-1 libsepol1_2.5-1 libsigsegv2_2.10-5 libslang2_2.3.0-3 libsmartcols1_2.28-5 libss2_1.43.1-1 libstdc++-4.9-dev_4.9.3-14 libstdc++-5-dev_5.4.0-4 libstdc++6_6.1.1-1+rpi1 libsystemd0_230-5 libterm-readkey-perl_2.33-1+b1 libtext-wrapper-perl_1.05-2 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160319-2 libtool_2.4.6-0.1 libubsan0_6.1.1-1+rpi1 libudev1_230-5 libunistring0_0.9.6+really0.9.3-0.1 libusb-0.1-4_2:0.1.12-30 libustr-1.0-1_1.0.4-5 libuuid1_2.28-5 libxml2_2.9.3+dfsg1-1.2 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.2-3.1 lsb-base_9.20160629+rpi1 m4_1.4.17-5 make_4.1-9 makedev_2.3.1-93 man-db_2.7.5-1 manpages_4.06-1 mawk_1.3.3-17 mount_2.28-5 multiarch-support_2.23-1+rpi1 nano_2.6.1-1 ncurses-base_6.0+20160319-2 ncurses-bin_6.0+20160319-2 ocl-icd-libopencl1_2.2.9-1 openmpi-common_1.10.3-3+rpi1 passwd_1:4.2-3.1 patch_2.7.5-1 perl_5.22.2-2 perl-base_5.22.2-2 perl-modules-5.22_5.22.2-2 po-debconf_1.0.19 procps_2:3.3.11-3 raspbian-archive-keyring_20120528.2 readline-common_6.3-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-murasaki-dummy_0.invalid.0 sed_4.2.2-7.1 sensible-utils_0.0.9 startpar_0.59-3 systemd_230-5 systemd-sysv_230-5 sysv-rc_2.88dsf-59.7 sysvinit-utils_2.88dsf-59.7 tar_1.29-1+rpi1 tzdata_2016f-1 udev_230-5 util-linux_2.28-5 xz-utils_5.1.1alpha+20120614-2.1 zlib1g_1:1.2.8.dfsg-2+b1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Tue Jul 12 07:30:27 2016 UTC using RSA key ID D1C646D1
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./murasaki_1.68.6-6.dsc
dpkg-source: info: extracting murasaki in murasaki-1.68.6
dpkg-source: info: unpacking murasaki_1.68.6.orig.tar.gz
dpkg-source: info: unpacking murasaki_1.68.6-6.debian.tar.xz
dpkg-source: info: applying use_proper_libboost_names.patch
dpkg-source: info: applying include_libpstream.patch
dpkg-source: info: applying hardening.patch
dpkg-source: info: applying spelling.patch
dpkg-source: info: applying man_syntax.patch
dpkg-source: info: applying freebsd.patch
dpkg-source: info: applying gcc-6.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-329aa260-5358-41ad-aa60-0e463bf212e3
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package murasaki
dpkg-buildpackage: info: source version 1.68.6-6
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build murasaki-1.68.6
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean
dh_testdir
dh_auto_clean
make -j1 clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
rm -rf *.o *~ .*~ core
make -C src clean
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
rm -rf *.o *~ .*~ core ../murasaki ../cgr-image ../cgr-compare ../cgr-random ../cgr-sample ../testeco ../align-compare ../align-or ../geneparse ../align-and ../align-best ../align-coverage ../getsegments ../mbfa
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_clean
debian/rules build-arch
dh build-arch
dh_testdir -a
dh_update_autotools_config -a
dh_auto_configure -a
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_build -- USE_MPI=YES
make -j1 USE_MPI=YES
make[2]: Entering directory '/<<PKGBUILDDIR>>'
make -C src all
make[3]: Entering directory '/<<PKGBUILDDIR>>/src'
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c murasaki.cc
murasaki.cc: In function 'void procLocs(LocList&, std::__cxx11::list<Location>&, int, int)':
murasaki.cc:1008:8: warning: variable 'revZero' set but not used [-Wunused-but-set-variable]
bool revZero=false;
^
murasaki.cc: In function 'bool convertPattern(std::__cxx11::string&)':
murasaki.cc:1284:27: warning: 'result' may be used uninitialized in this function [-Wmaybe-uninitialized]
randomStr.reserve(length-2);
^
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c timing.cc
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c dinkymath.cc
dinkymath.cc: In function 'std::__cxx11::string littleEndianStr(unsigned int, int)':
dinkymath.cc:40:7: warning: variable 'last' set but not used [-Wunused-but-set-variable]
int last=0;
^
dinkymath.cc: In function 'std::__cxx11::string littleEndianPat(unsigned int, int)':
dinkymath.cc:53:7: warning: variable 'last' set but not used [-Wunused-but-set-variable]
int last=0;
^
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c sequence.cc
sequence.cc: In member function 'std::pair<double, long int> IntervalSet::entropy() const':
sequence.cc:3332:10: warning: variable 'shortest' set but not used [-Wunused-but-set-variable]
SeqPos shortest=0,shortlen=length(spaces[0]);
^
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c msethash.cc
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c options.cc
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c ecohash.cc
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c ecolist.cc
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c murasaki_mpi.cc
murasaki_mpi.cc: In function 'void mpi_types_init()':
murasaki_mpi.cc:107:3: warning: 'int MPI_Address(void*, MPI_Aint*)' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations]
MPI_Address(&msg.key,disp);
^
In file included from murasaki_mpi.cc:29:0:
/usr/lib/openmpi/include/mpi.h:1187:20: note: declared here
OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address)
^
murasaki_mpi.cc:107:3: warning: 'int MPI_Address(void*, MPI_Aint*)' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations]
MPI_Address(&msg.key,disp);
^
In file included from murasaki_mpi.cc:29:0:
/usr/lib/openmpi/include/mpi.h:1187:20: note: declared here
OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address)
^
murasaki_mpi.cc:107:28: warning: 'int MPI_Address(void*, MPI_Aint*)' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations]
MPI_Address(&msg.key,disp);
^
In file included from murasaki_mpi.cc:29:0:
/usr/lib/openmpi/include/mpi.h:1187:20: note: declared here
OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address)
^
murasaki_mpi.cc:108:3: warning: 'int MPI_Address(void*, MPI_Aint*)' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations]
MPI_Address(&msg.seqno,disp+1);
^
In file included from murasaki_mpi.cc:29:0:
/usr/lib/openmpi/include/mpi.h:1187:20: note: declared here
OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address)
^
murasaki_mpi.cc:108:3: warning: 'int MPI_Address(void*, MPI_Aint*)' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations]
MPI_Address(&msg.seqno,disp+1);
^
In file included from murasaki_mpi.cc:29:0:
/usr/lib/openmpi/include/mpi.h:1187:20: note: declared here
OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address)
^
murasaki_mpi.cc:108:32: warning: 'int MPI_Address(void*, MPI_Aint*)' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations]
MPI_Address(&msg.seqno,disp+1);
^
In file included from murasaki_mpi.cc:29:0:
/usr/lib/openmpi/include/mpi.h:1187:20: note: declared here
OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address)
^
murasaki_mpi.cc:109:3: warning: 'int MPI_Address(void*, MPI_Aint*)' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations]
MPI_Address(&msg.pos,disp+1);
^
In file included from murasaki_mpi.cc:29:0:
/usr/lib/openmpi/include/mpi.h:1187:20: note: declared here
OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address)
^
murasaki_mpi.cc:109:3: warning: 'int MPI_Address(void*, MPI_Aint*)' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations]
MPI_Address(&msg.pos,disp+1);
^
In file included from murasaki_mpi.cc:29:0:
/usr/lib/openmpi/include/mpi.h:1187:20: note: declared here
OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address)
^
murasaki_mpi.cc:109:30: warning: 'int MPI_Address(void*, MPI_Aint*)' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations]
MPI_Address(&msg.pos,disp+1);
^
In file included from murasaki_mpi.cc:29:0:
/usr/lib/openmpi/include/mpi.h:1187:20: note: declared here
OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address)
^
murasaki_mpi.cc:112:3: warning: 'int MPI_Type_struct(int, int*, MPI_Aint*, ompi_datatype_t**, ompi_datatype_t**)' is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations]
MPI_Type_struct(3,blocklen,disp,type,&MPI_HashMessage_type);
^
In file included from murasaki_mpi.cc:29:0:
/usr/lib/openmpi/include/mpi.h:1796:20: note: declared here
OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[],
^
murasaki_mpi.cc:112:3: warning: 'int MPI_Type_struct(int, int*, MPI_Aint*, ompi_datatype_t**, ompi_datatype_t**)' is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations]
MPI_Type_struct(3,blocklen,disp,type,&MPI_HashMessage_type);
^
In file included from murasaki_mpi.cc:29:0:
/usr/lib/openmpi/include/mpi.h:1796:20: note: declared here
OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[],
^
murasaki_mpi.cc:112:61: warning: 'int MPI_Type_struct(int, int*, MPI_Aint*, ompi_datatype_t**, ompi_datatype_t**)' is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations]
MPI_Type_struct(3,blocklen,disp,type,&MPI_HashMessage_type);
^
In file included from murasaki_mpi.cc:29:0:
/usr/lib/openmpi/include/mpi.h:1796:20: note: declared here
OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[],
^
murasaki_mpi.cc: In function 'void mpi_hasher_client_mode(BitSequence*)':
murasaki_mpi.cc:561:9: warning: variable 'send_done' set but not used [-Wunused-but-set-variable]
int send_done;
^
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c arrayhash.cc
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c seqread.cc
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c scoring.cc
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c openhash.cc
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c genopts.cc
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c binseq.cc
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../murasaki murasaki.o timing.o dinkymath.o sequence.o msethash.o options.o ecohash.o ecolist.o murasaki_mpi.o arrayhash.o seqread.o scoring.o openhash.o genopts.o binseq.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -Wl,-z,now -lcryptopp -pthread
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c cgr-image.cc
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c cgr.cc
cgr.cc: In member function 'void Cgr::merge(Cgr&)':
cgr.cc:140:7: warning: variable 'redist' set but not used [-Wunused-but-set-variable]
int redist=(unsigned long)(rez*rez)<=seedcount;
^
cgr.cc: In member function 'bool Cgr::savePNG(std::__cxx11::string)':
cgr.cc:288:7: warning: variable 'res' set but not used [-Wunused-but-set-variable]
int res;
^
cgr.cc: In member function 'int PgmBuffer::loadPGM(std::__cxx11::string)':
cgr.cc:435:7: warning: variable 'wordwidth' set but not used [-Wunused-but-set-variable]
int wordwidth=1;
^
cgr.cc: In member function 'int PgmBuffer::loadBinaryPGM(std::__cxx11::string)':
cgr.cc:557:31: warning: 'height' may be used uninitialized in this function [-Wmaybe-uninitialized]
if(data.size()<(uint)(height*width))
^
cgr.cc:557:31: warning: 'width' may be used uninitialized in this function [-Wmaybe-uninitialized]
cgr.cc: In member function 'int PgmBuffer::loadPGM(std::__cxx11::string)':
cgr.cc:485:31: warning: 'height' may be used uninitialized in this function [-Wmaybe-uninitialized]
if(data.size()<(uint)(height*width))
^
cgr.cc:485:31: warning: 'width' may be used uninitialized in this function [-Wmaybe-uninitialized]
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../cgr-image cgr-image.o cgr.o dinkymath.o timing.o seqread.o genopts.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -Wl,-z,now -lcryptopp -pthread
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c cgr-compare.cc
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../cgr-compare cgr-compare.o cgr.o dinkymath.o timing.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -Wl,-z,now -lcryptopp -pthread
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c cgr-random.cc
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../cgr-random cgr-random.o cgr.o dinkymath.o timing.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -Wl,-z,now -lcryptopp -pthread
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c cgr-sample.cc
cgr-sample.cc: In function 'int main(int, char**)':
cgr-sample.cc:54:8: warning: variable 'repeatmask' set but not used [-Wunused-but-set-variable]
bool repeatmask=false,save=false;
^
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../cgr-sample cgr.o cgr-sample.o seqread.o genopts.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -Wl,-z,now -lcryptopp -pthread
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c testeco.cc
testeco.cc:42:3: warning: this decimal constant is unsigned only in ISO C90
const long genomesize=3221225472;
^
testeco.cc: In function 'long int bigrand()':
testeco.cc:29:43: warning: left shift count >= width of type [-Wshift-count-overflow]
return (long)(((unsigned long)(rand())<<32) + ((unsigned long)(rand())));
^
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../testeco testeco.o ecolist.o dinkymath.o timing.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -Wl,-z,now -lcryptopp -pthread
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c align-compare.cc
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c alignments.cc
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../align-compare align-compare.o dinkymath.o alignments.o timing.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -Wl,-z,now -lcryptopp -pthread
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c align-or.cc
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../align-or align-or.o alignments.o dinkymath.o timing.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -Wl,-z,now -lcryptopp -pthread
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c geneparse.cc
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../geneparse geneparse.o seqread.o genopts.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -Wl,-z,now -lcryptopp -pthread
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c align-and.cc
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../align-and align-and.o alignments.o dinkymath.o timing.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -Wl,-z,now -lcryptopp -pthread
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c align-best.cc
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../align-best align-best.o alignments.o dinkymath.o timing.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -Wl,-z,now -lcryptopp -pthread
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c align-coverage.cc
align-coverage.cc: In function 'int main(int, char**)':
align-coverage.cc:148:10: warning: variable 'seqStats' set but not used [-Wunused-but-set-variable]
bool seqStats=true;
^
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../align-coverage align-coverage.o alignments.o dinkymath.o timing.o seqread.o genopts.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -Wl,-z,now -lcryptopp -pthread
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c getsegments.cc
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../getsegments getsegments.o seqread.o genopts.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -Wl,-z,now -lcryptopp -pthread
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c mbfa.cc
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../mbfa mbfa.o dinkymath.o timing.o seqread.o binseq.o genopts.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -Wl,-z,now -lcryptopp -pthread
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
for bin in geneparse mbfa murasaki cgr-* testeco align-* ; do \
mv ${bin} ${bin}-mpi ; \
done
make clean
make[2]: Entering directory '/<<PKGBUILDDIR>>'
rm -rf *.o *~ .*~ core
make -C src clean
make[3]: Entering directory '/<<PKGBUILDDIR>>/src'
rm -rf *.o *~ .*~ core ../murasaki ../cgr-image ../cgr-compare ../cgr-random ../cgr-sample ../testeco ../align-compare ../align-or ../geneparse ../align-and ../align-best ../align-coverage ../getsegments ../mbfa
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build -- USE_MPI=NO
make -j1 USE_MPI=NO
make[2]: Entering directory '/<<PKGBUILDDIR>>'
make -C src all
make[3]: Entering directory '/<<PKGBUILDDIR>>/src'
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c murasaki.cc
murasaki.cc: In function 'void procLocs(LocList&, std::__cxx11::list<Location>&, int, int)':
murasaki.cc:1008:8: warning: variable 'revZero' set but not used [-Wunused-but-set-variable]
bool revZero=false;
^
murasaki.cc: In function 'bool convertPattern(std::__cxx11::string&)':
murasaki.cc:1284:27: warning: 'result' may be used uninitialized in this function [-Wmaybe-uninitialized]
randomStr.reserve(length-2);
^
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c timing.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c dinkymath.cc
dinkymath.cc: In function 'std::__cxx11::string littleEndianStr(unsigned int, int)':
dinkymath.cc:40:7: warning: variable 'last' set but not used [-Wunused-but-set-variable]
int last=0;
^
dinkymath.cc: In function 'std::__cxx11::string littleEndianPat(unsigned int, int)':
dinkymath.cc:53:7: warning: variable 'last' set but not used [-Wunused-but-set-variable]
int last=0;
^
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c sequence.cc
sequence.cc: In member function 'std::pair<double, long int> IntervalSet::entropy() const':
sequence.cc:3332:10: warning: variable 'shortest' set but not used [-Wunused-but-set-variable]
SeqPos shortest=0,shortlen=length(spaces[0]);
^
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c msethash.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c options.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c ecohash.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c ecolist.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c murasaki_mpi.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c arrayhash.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c seqread.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c scoring.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c openhash.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c genopts.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c binseq.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../murasaki murasaki.o timing.o dinkymath.o sequence.o msethash.o options.o ecohash.o ecolist.o murasaki_mpi.o arrayhash.o seqread.o scoring.o openhash.o genopts.o binseq.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -Wl,-z,now -lcryptopp -pthread
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c cgr-image.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c cgr.cc
cgr.cc: In member function 'void Cgr::merge(Cgr&)':
cgr.cc:140:7: warning: variable 'redist' set but not used [-Wunused-but-set-variable]
int redist=(unsigned long)(rez*rez)<=seedcount;
^
cgr.cc: In member function 'bool Cgr::savePNG(std::__cxx11::string)':
cgr.cc:288:7: warning: variable 'res' set but not used [-Wunused-but-set-variable]
int res;
^
cgr.cc: In member function 'int PgmBuffer::loadPGM(std::__cxx11::string)':
cgr.cc:435:7: warning: variable 'wordwidth' set but not used [-Wunused-but-set-variable]
int wordwidth=1;
^
cgr.cc: In member function 'int PgmBuffer::loadBinaryPGM(std::__cxx11::string)':
cgr.cc:557:31: warning: 'height' may be used uninitialized in this function [-Wmaybe-uninitialized]
if(data.size()<(uint)(height*width))
^
cgr.cc:557:31: warning: 'width' may be used uninitialized in this function [-Wmaybe-uninitialized]
cgr.cc: In member function 'int PgmBuffer::loadPGM(std::__cxx11::string)':
cgr.cc:485:31: warning: 'height' may be used uninitialized in this function [-Wmaybe-uninitialized]
if(data.size()<(uint)(height*width))
^
cgr.cc:485:31: warning: 'width' may be used uninitialized in this function [-Wmaybe-uninitialized]
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../cgr-image cgr-image.o cgr.o dinkymath.o timing.o seqread.o genopts.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -Wl,-z,now -lcryptopp -pthread
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c cgr-compare.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../cgr-compare cgr-compare.o cgr.o dinkymath.o timing.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -Wl,-z,now -lcryptopp -pthread
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c cgr-random.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../cgr-random cgr-random.o cgr.o dinkymath.o timing.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -Wl,-z,now -lcryptopp -pthread
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c cgr-sample.cc
cgr-sample.cc: In function 'int main(int, char**)':
cgr-sample.cc:54:8: warning: variable 'repeatmask' set but not used [-Wunused-but-set-variable]
bool repeatmask=false,save=false;
^
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../cgr-sample cgr.o cgr-sample.o seqread.o genopts.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -Wl,-z,now -lcryptopp -pthread
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c testeco.cc
testeco.cc:42:3: warning: this decimal constant is unsigned only in ISO C90
const long genomesize=3221225472;
^
testeco.cc: In function 'long int bigrand()':
testeco.cc:29:43: warning: left shift count >= width of type [-Wshift-count-overflow]
return (long)(((unsigned long)(rand())<<32) + ((unsigned long)(rand())));
^
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../testeco testeco.o ecolist.o dinkymath.o timing.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -Wl,-z,now -lcryptopp -pthread
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c align-compare.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c alignments.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../align-compare align-compare.o dinkymath.o alignments.o timing.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -Wl,-z,now -lcryptopp -pthread
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c align-or.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../align-or align-or.o alignments.o dinkymath.o timing.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -Wl,-z,now -lcryptopp -pthread
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c geneparse.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../geneparse geneparse.o seqread.o genopts.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -Wl,-z,now -lcryptopp -pthread
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c align-and.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../align-and align-and.o alignments.o dinkymath.o timing.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -Wl,-z,now -lcryptopp -pthread
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c align-best.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../align-best align-best.o alignments.o dinkymath.o timing.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -Wl,-z,now -lcryptopp -pthread
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c align-coverage.cc
align-coverage.cc: In function 'int main(int, char**)':
align-coverage.cc:148:10: warning: variable 'seqStats' set but not used [-Wunused-but-set-variable]
bool seqStats=true;
^
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../align-coverage align-coverage.o alignments.o dinkymath.o timing.o seqread.o genopts.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -Wl,-z,now -lcryptopp -pthread
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c getsegments.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../getsegments getsegments.o seqread.o genopts.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -Wl,-z,now -lcryptopp -pthread
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c mbfa.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../mbfa mbfa.o dinkymath.o timing.o seqread.o binseq.o genopts.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -Wl,-z,now -lcryptopp -pthread
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test -a
fakeroot debian/rules binary-arch
dh binary-arch
dh_testroot -a
dh_prep -a
dh_auto_install -a
debian/rules override_dh_install-arch
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install -a
# using wildcards in install files is practical but it duplicates some files
find debian/murasaki/usr -name "*-mpi" -delete
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a
dh_installchangelogs -a
dh_installman -a
dh_perl -a
debian/rules override_dh_link
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_link
mkdir -p debian/murasaki-mpi/usr/share/man/man1
for man in debian/murasaki/usr/share/man/man1/* ; do \
ln -s `basename ${man}`.gz debian/murasaki-mpi/usr/share/man/man1/`basename ${man} .1`-mpi.1.gz ; \
done
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: debian/murasaki/usr/lib/murasaki/align-best contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/murasaki/usr/bin/murasaki contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/murasaki/usr/bin/mbfa contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/murasaki/usr/lib/murasaki/align-coverage contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/murasaki/usr/lib/murasaki/cgr-random contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/murasaki/usr/lib/murasaki/align-compare contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/murasaki/usr/lib/murasaki/testeco contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/murasaki/usr/bin/geneparse contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/murasaki/usr/lib/murasaki/cgr-image contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/murasaki/usr/lib/murasaki/cgr-compare contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/murasaki/usr/lib/murasaki/align-or contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/murasaki/usr/lib/murasaki/cgr-sample contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/murasaki/usr/lib/murasaki/align-and contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/murasaki-mpi/usr/lib/murasaki/cgr-random-mpi contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/murasaki-mpi/usr/lib/murasaki/cgr-compare-mpi contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/murasaki-mpi/usr/lib/murasaki/align-compare-mpi contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/murasaki-mpi/usr/lib/murasaki/cgr-sample-mpi contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/murasaki-mpi/usr/bin/murasaki-mpi contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/murasaki-mpi/usr/lib/murasaki/align-and-mpi contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/murasaki-mpi/usr/lib/murasaki/align-best-mpi contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/murasaki-mpi/usr/lib/murasaki/align-coverage-mpi contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/murasaki-mpi/usr/bin/geneparse-mpi contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/murasaki-mpi/usr/lib/murasaki/testeco-mpi contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/murasaki-mpi/usr/lib/murasaki/align-or-mpi contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/murasaki-mpi/usr/bin/mbfa-mpi contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/murasaki-mpi/usr/lib/murasaki/cgr-image-mpi contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/murasaki-mpi/usr/lib/murasaki/cgr-random-mpi debian/murasaki-mpi/usr/lib/murasaki/cgr-compare-mpi debian/murasaki-mpi/usr/lib/murasaki/align-compare-mpi debian/murasaki-mpi/usr/lib/murasaki/cgr-sample-mpi debian/murasaki-mpi/usr/bin/murasaki-mpi debian/murasaki-mpi/usr/lib/murasaki/align-and-mpi debian/murasaki-mpi/usr/lib/murasaki/align-best-mpi debian/murasaki-mpi/usr/lib/murasaki/align-coverage-mpi debian/murasaki-mpi/usr/bin/geneparse-mpi debian/murasaki-mpi/usr/lib/murasaki/testeco-mpi debian/murasaki-mpi/usr/lib/murasaki/align-or-mpi debian/murasaki-mpi/usr/bin/mbfa-mpi debian/murasaki-mpi/usr/lib/murasaki/cgr-image-mpi were not linked against libmpi_cxx.so.1 (they use none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package murasaki-mpi: unused substitution variable ${perl:Depends}
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package murasaki-mpi: unused substitution variable ${perl:Depends}
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'murasaki-mpi-dbgsym' in '../murasaki-mpi-dbgsym_1.68.6-6_armhf.deb'.
dpkg-deb: building package 'murasaki-dbgsym' in '../murasaki-dbgsym_1.68.6-6_armhf.deb'.
dpkg-deb: building package 'murasaki' in '../murasaki_1.68.6-6_armhf.deb'.
dpkg-deb: building package 'murasaki-mpi' in '../murasaki-mpi_1.68.6-6_armhf.deb'.
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../murasaki_1.68.6-6_armhf.changes
dpkg-genchanges: warning: package murasaki-mpi-dbgsym listed in files list but not in control info
dpkg-genchanges: warning: package murasaki-dbgsym listed in files list but not in control info
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build murasaki-1.68.6
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 20160717-1109
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
murasaki_1.68.6-6_armhf.changes:
--------------------------------
Format: 1.8
Date: Thu, 30 Jun 2016 09:15:01 +0000
Source: murasaki
Binary: murasaki murasaki-mpi murasaki-common
Architecture: armhf
Version: 1.68.6-6
Distribution: stretch-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Gert Wollny <gw.fossdev@gmail.com>
Description:
murasaki - homology detection tool across multiple large genomes
murasaki-common - homology detection tool across multiple large genomes (common fil
murasaki-mpi - homology detection tool across multiple large genomes (MPI-versio
Closes: 811815
Changes:
murasaki (1.68.6-6) unstable; urgency=medium
.
[ Gert Wollny ]
* Team upload
* d/p/gcc-6: Add patch to compile with gcc-6: Closes: #811815
* cme fix dpkg-control
.
[ Andreas Tille ]
* hardening=+bindnow
Checksums-Sha1:
d06b5757bf85de69d1bda16f4518826d1c11e35a 9603700 murasaki-dbgsym_1.68.6-6_armhf.deb
e5a6beaca88cc2e27fd2c59906480e2d91edbefc 10060238 murasaki-mpi-dbgsym_1.68.6-6_armhf.deb
fc5b812717123fc0045b28ed3dba07aedb6cb860 387674 murasaki-mpi_1.68.6-6_armhf.deb
fa527bc0989f3b081e77c7a0699c002497a52db3 372096 murasaki_1.68.6-6_armhf.deb
Checksums-Sha256:
01164dc28b6c431e62bd661228a9668d8b9a9d9aa5a442fbab39ea39651c3496 9603700 murasaki-dbgsym_1.68.6-6_armhf.deb
8f8a4a59cc20ebc1bb4f705301279f230c1b1a0e3c4795291dea6765e11cc7a0 10060238 murasaki-mpi-dbgsym_1.68.6-6_armhf.deb
1ff5e4ef67b5707d46c0d6096d20090825ba260bb6f30691875d7dcb808bc3d5 387674 murasaki-mpi_1.68.6-6_armhf.deb
384f7e5c0f2cff25b846120123f837ff42c9f8222595ac9c4233a25fb5d241ea 372096 murasaki_1.68.6-6_armhf.deb
Files:
96402ae6346f01371703e599bed055fa 9603700 debug extra murasaki-dbgsym_1.68.6-6_armhf.deb
64823985e2239ce6e8b11d49063c23a7 10060238 debug extra murasaki-mpi-dbgsym_1.68.6-6_armhf.deb
cb0e6c1695db899eb95c58881e838dc6 387674 science optional murasaki-mpi_1.68.6-6_armhf.deb
2ff15fce1bbb6d895c137ec93ec2e214 372096 science optional murasaki_1.68.6-6_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
murasaki-dbgsym_1.68.6-6_armhf.deb
----------------------------------
new debian package, version 2.0.
size 9603700 bytes: control archive=1155 bytes.
918 bytes, 13 lines control
1378 bytes, 13 lines md5sums
Package: murasaki-dbgsym
Source: murasaki
Version: 1.68.6-6
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 10450
Depends: murasaki (= 1.68.6-6)
Section: debug
Priority: extra
Homepage: http://murasaki.dna.bio.keio.ac.jp/wiki/
Description: Debug symbols for murasaki
Auto-Built-Package: debug-symbols
Build-Ids: 18cbe1974ae268aa745cb0bbb6fa156bf66e6a03 19660719782c6b1c8c556fc10b5ead95b295a2f9 1d50a97e5251adacf0f39afed2804782b0033ce4 39e558f75cc0354922c4de478df2db68f86162ad 3bddf9f275c4fd02ba4de6e8519c522317efe7c7 5b720128818f53430b1525494da249ebe5ea2130 68a79c6c11acee314a4f349c18ba3e8650d4e4f8 7ac28e9803cafe1ddd4936929a0235d8b6c4081f 8ad27d277d95348e27a1aad3a4b94d265e79c0bc b6cef501c8b0488ebf5312454f2b02d26deadd0b e298243806dd886f076e3d92f9a4747c7fcc6b88 e747bf93ff624514bee96ade450e51cbf5e2f497 ff346ea1631583c8457b94272b25940c0e8635ad
drwxr-xr-x root/root 0 2016-07-17 11:08 ./
drwxr-xr-x root/root 0 2016-07-17 11:07 ./usr/
drwxr-xr-x root/root 0 2016-07-17 11:07 ./usr/lib/
drwxr-xr-x root/root 0 2016-07-17 11:07 ./usr/lib/debug/
drwxr-xr-x root/root 0 2016-07-17 11:07 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2016-07-17 11:07 ./usr/lib/debug/.build-id/18/
-rw-r--r-- root/root 825244 2016-07-17 11:07 ./usr/lib/debug/.build-id/18/cbe1974ae268aa745cb0bbb6fa156bf66e6a03.debug
drwxr-xr-x root/root 0 2016-07-17 11:07 ./usr/lib/debug/.build-id/19/
-rw-r--r-- root/root 1108328 2016-07-17 11:07 ./usr/lib/debug/.build-id/19/660719782c6b1c8c556fc10b5ead95b295a2f9.debug
drwxr-xr-x root/root 0 2016-07-17 11:07 ./usr/lib/debug/.build-id/1d/
-rw-r--r-- root/root 847832 2016-07-17 11:07 ./usr/lib/debug/.build-id/1d/50a97e5251adacf0f39afed2804782b0033ce4.debug
drwxr-xr-x root/root 0 2016-07-17 11:07 ./usr/lib/debug/.build-id/39/
-rw-r--r-- root/root 682564 2016-07-17 11:07 ./usr/lib/debug/.build-id/39/e558f75cc0354922c4de478df2db68f86162ad.debug
drwxr-xr-x root/root 0 2016-07-17 11:07 ./usr/lib/debug/.build-id/3b/
-rw-r--r-- root/root 653068 2016-07-17 11:07 ./usr/lib/debug/.build-id/3b/ddf9f275c4fd02ba4de6e8519c522317efe7c7.debug
drwxr-xr-x root/root 0 2016-07-17 11:07 ./usr/lib/debug/.build-id/5b/
-rw-r--r-- root/root 802908 2016-07-17 11:07 ./usr/lib/debug/.build-id/5b/720128818f53430b1525494da249ebe5ea2130.debug
drwxr-xr-x root/root 0 2016-07-17 11:07 ./usr/lib/debug/.build-id/68/
-rw-r--r-- root/root 428708 2016-07-17 11:07 ./usr/lib/debug/.build-id/68/a79c6c11acee314a4f349c18ba3e8650d4e4f8.debug
drwxr-xr-x root/root 0 2016-07-17 11:07 ./usr/lib/debug/.build-id/7a/
-rw-r--r-- root/root 906564 2016-07-17 11:07 ./usr/lib/debug/.build-id/7a/c28e9803cafe1ddd4936929a0235d8b6c4081f.debug
drwxr-xr-x root/root 0 2016-07-17 11:07 ./usr/lib/debug/.build-id/8a/
-rw-r--r-- root/root 614872 2016-07-17 11:07 ./usr/lib/debug/.build-id/8a/d27d277d95348e27a1aad3a4b94d265e79c0bc.debug
drwxr-xr-x root/root 0 2016-07-17 11:07 ./usr/lib/debug/.build-id/b6/
-rw-r--r-- root/root 2419000 2016-07-17 11:07 ./usr/lib/debug/.build-id/b6/cef501c8b0488ebf5312454f2b02d26deadd0b.debug
drwxr-xr-x root/root 0 2016-07-17 11:07 ./usr/lib/debug/.build-id/e2/
-rw-r--r-- root/root 318928 2016-07-17 11:07 ./usr/lib/debug/.build-id/e2/98243806dd886f076e3d92f9a4747c7fcc6b88.debug
drwxr-xr-x root/root 0 2016-07-17 11:07 ./usr/lib/debug/.build-id/e7/
-rw-r--r-- root/root 642264 2016-07-17 11:07 ./usr/lib/debug/.build-id/e7/47bf93ff624514bee96ade450e51cbf5e2f497.debug
drwxr-xr-x root/root 0 2016-07-17 11:07 ./usr/lib/debug/.build-id/ff/
-rw-r--r-- root/root 421320 2016-07-17 11:07 ./usr/lib/debug/.build-id/ff/346ea1631583c8457b94272b25940c0e8635ad.debug
drwxr-xr-x root/root 0 2016-07-17 11:07 ./usr/share/
drwxr-xr-x root/root 0 2016-07-17 11:07 ./usr/share/doc/
lrwxrwxrwx root/root 0 2016-07-17 11:07 ./usr/share/doc/murasaki-dbgsym -> murasaki
murasaki-mpi-dbgsym_1.68.6-6_armhf.deb
--------------------------------------
new debian package, version 2.0.
size 10060238 bytes: control archive=1150 bytes.
930 bytes, 13 lines control
1378 bytes, 13 lines md5sums
Package: murasaki-mpi-dbgsym
Source: murasaki
Version: 1.68.6-6
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 10912
Depends: murasaki-mpi (= 1.68.6-6)
Section: debug
Priority: extra
Homepage: http://murasaki.dna.bio.keio.ac.jp/wiki/
Description: Debug symbols for murasaki-mpi
Auto-Built-Package: debug-symbols
Build-Ids: 022388ca583a7f9eb3292e85b3b78cce0f51ec70 0650563e36d68c932972a7488fb57dca0fe855bc 21124d4af0c6a2d4ca523086c62affc8f57684ba 2867d198e9cef5810ceb31f7ee6ee4d56a9344e7 5c35c2c2590c33ca67cd330a4ce21fc1b7757d7c 77dc7b0deaac76975117046d8e072e376b89b85c 9ea42126621734cde0a1b5ada0286d1439a90a45 af09d470a1be2cde17c3dc26fe764de00b44a969 b49a814c1d70ad2c62aa8a1912febff0d1b5343e b57068cf18c44c7fe2bd3486ed40147b5ee80173 b86eaeaab95234e3ae57738cacedecb49e5a7480 c0da1591c9870b31b196759eeb36a99bb00441d8 d6da3cf57bd2de623cde08dec332f7d33ac21869
drwxr-xr-x root/root 0 2016-07-17 11:08 ./
drwxr-xr-x root/root 0 2016-07-17 11:07 ./usr/
drwxr-xr-x root/root 0 2016-07-17 11:07 ./usr/lib/
drwxr-xr-x root/root 0 2016-07-17 11:07 ./usr/lib/debug/
drwxr-xr-x root/root 0 2016-07-17 11:07 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2016-07-17 11:07 ./usr/lib/debug/.build-id/02/
-rw-r--r-- root/root 851472 2016-07-17 11:07 ./usr/lib/debug/.build-id/02/2388ca583a7f9eb3292e85b3b78cce0f51ec70.debug
drwxr-xr-x root/root 0 2016-07-17 11:07 ./usr/lib/debug/.build-id/06/
-rw-r--r-- root/root 327708 2016-07-17 11:07 ./usr/lib/debug/.build-id/06/50563e36d68c932972a7488fb57dca0fe855bc.debug
drwxr-xr-x root/root 0 2016-07-17 11:07 ./usr/lib/debug/.build-id/21/
-rw-r--r-- root/root 614716 2016-07-17 11:07 ./usr/lib/debug/.build-id/21/124d4af0c6a2d4ca523086c62affc8f57684ba.debug
drwxr-xr-x root/root 0 2016-07-17 11:07 ./usr/lib/debug/.build-id/28/
-rw-r--r-- root/root 2847944 2016-07-17 11:07 ./usr/lib/debug/.build-id/28/67d198e9cef5810ceb31f7ee6ee4d56a9344e7.debug
drwxr-xr-x root/root 0 2016-07-17 11:07 ./usr/lib/debug/.build-id/5c/
-rw-r--r-- root/root 825232 2016-07-17 11:07 ./usr/lib/debug/.build-id/5c/35c2c2590c33ca67cd330a4ce21fc1b7757d7c.debug
drwxr-xr-x root/root 0 2016-07-17 11:07 ./usr/lib/debug/.build-id/77/
-rw-r--r-- root/root 425324 2016-07-17 11:07 ./usr/lib/debug/.build-id/77/dc7b0deaac76975117046d8e072e376b89b85c.debug
drwxr-xr-x root/root 0 2016-07-17 11:07 ./usr/lib/debug/.build-id/9e/
-rw-r--r-- root/root 656876 2016-07-17 11:07 ./usr/lib/debug/.build-id/9e/a42126621734cde0a1b5ada0286d1439a90a45.debug
drwxr-xr-x root/root 0 2016-07-17 11:07 ./usr/lib/debug/.build-id/af/
-rw-r--r-- root/root 1112316 2016-07-17 11:07 ./usr/lib/debug/.build-id/af/09d470a1be2cde17c3dc26fe764de00b44a969.debug
drwxr-xr-x root/root 0 2016-07-17 11:07 ./usr/lib/debug/.build-id/b4/
-rw-r--r-- root/root 910860 2016-07-17 11:07 ./usr/lib/debug/.build-id/b4/9a814c1d70ad2c62aa8a1912febff0d1b5343e.debug
drwxr-xr-x root/root 0 2016-07-17 11:07 ./usr/lib/debug/.build-id/b5/
-rw-r--r-- root/root 806652 2016-07-17 11:07 ./usr/lib/debug/.build-id/b5/7068cf18c44c7fe2bd3486ed40147b5ee80173.debug
drwxr-xr-x root/root 0 2016-07-17 11:07 ./usr/lib/debug/.build-id/b8/
-rw-r--r-- root/root 432800 2016-07-17 11:07 ./usr/lib/debug/.build-id/b8/6eaeaab95234e3ae57738cacedecb49e5a7480.debug
drwxr-xr-x root/root 0 2016-07-17 11:07 ./usr/lib/debug/.build-id/c0/
-rw-r--r-- root/root 646024 2016-07-17 11:07 ./usr/lib/debug/.build-id/c0/da1591c9870b31b196759eeb36a99bb00441d8.debug
drwxr-xr-x root/root 0 2016-07-17 11:07 ./usr/lib/debug/.build-id/d6/
-rw-r--r-- root/root 686424 2016-07-17 11:07 ./usr/lib/debug/.build-id/d6/da3cf57bd2de623cde08dec332f7d33ac21869.debug
drwxr-xr-x root/root 0 2016-07-17 11:07 ./usr/share/
drwxr-xr-x root/root 0 2016-07-17 11:07 ./usr/share/doc/
lrwxrwxrwx root/root 0 2016-07-17 11:07 ./usr/share/doc/murasaki-mpi-dbgsym -> murasaki-mpi
murasaki-mpi_1.68.6-6_armhf.deb
-------------------------------
new debian package, version 2.0.
size 387674 bytes: control archive=1470 bytes.
1379 bytes, 28 lines control
1116 bytes, 17 lines md5sums
Package: murasaki-mpi
Source: murasaki
Version: 1.68.6-6
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 2449
Depends: murasaki-common, libboost-filesystem1.58.0, libboost-iostreams1.58.0, libboost-regex1.58.0, libboost-system1.58.0, libc6 (>= 2.4), libcrypto++6, libgcc1 (>= 1:3.5), libopenmpi1.10, libstdc++6 (>= 5.2)
Section: science
Priority: optional
Homepage: http://murasaki.dna.bio.keio.ac.jp/wiki/
Description: homology detection tool across multiple large genomes (MPI-version)
Murasaki is a scalable and fast, language theory-based homology
detection tool across multiple large genomes. It enable whole-genome
scale multiple genome global alignments. Supports unlimited length
gapped-seed patterns and unique TF-IDF based filtering.
.
Murasaki is an anchor alignment software, which is
* exteremely fast (17 CPU hours for whole Human x Mouse genome (with
40 nodes: 52 wall minutes))
* scalable (Arbitrarily parallelizable across multiple nodes using MPI.
Even a single node with 16GB of ram can handle over 1Gbp of sequence.)
* unlimited pattern length
* repeat tolerant
* intelligent noise reduction
.
This package provides the MPI-enabled binary for murasaki. While this
will speed up operation on multi-processor machines it will slow down
on a single processor.
drwxr-xr-x root/root 0 2016-07-17 11:08 ./
drwxr-xr-x root/root 0 2016-07-17 11:06 ./usr/
drwxr-xr-x root/root 0 2016-07-17 11:07 ./usr/bin/
-rwxr-xr-x root/root 181952 2016-07-17 11:07 ./usr/bin/geneparse-mpi
-rwxr-xr-x root/root 218752 2016-07-17 11:07 ./usr/bin/mbfa-mpi
-rwxr-xr-x root/root 580368 2016-07-17 11:07 ./usr/bin/murasaki-mpi
drwxr-xr-x root/root 0 2016-07-17 11:06 ./usr/lib/
drwxr-xr-x root/root 0 2016-07-17 11:07 ./usr/lib/murasaki/
-rwxr-xr-x root/root 144992 2016-07-17 11:07 ./usr/lib/murasaki/align-and-mpi
-rwxr-xr-x root/root 149104 2016-07-17 11:07 ./usr/lib/murasaki/align-best-mpi
-rwxr-xr-x root/root 165504 2016-07-17 11:07 ./usr/lib/murasaki/align-compare-mpi
-rwxr-xr-x root/root 226944 2016-07-17 11:07 ./usr/lib/murasaki/align-coverage-mpi
-rwxr-xr-x root/root 140880 2016-07-17 11:07 ./usr/lib/murasaki/align-or-mpi
-rwxr-xr-x root/root 79424 2016-07-17 11:07 ./usr/lib/murasaki/cgr-compare-mpi
-rwxr-xr-x root/root 231100 2016-07-17 11:07 ./usr/lib/murasaki/cgr-image-mpi
-rwxr-xr-x root/root 7138 2010-08-24 14:18 ./usr/lib/murasaki/cgr-image.pl-mpi
-rwxr-xr-x root/root 83540 2016-07-17 11:07 ./usr/lib/murasaki/cgr-random-mpi
-rwxr-xr-x root/root 222884 2016-07-17 11:07 ./usr/lib/murasaki/cgr-sample-mpi
-rwxr-xr-x root/root 50692 2016-07-17 11:07 ./usr/lib/murasaki/testeco-mpi
drwxr-xr-x root/root 0 2016-07-17 11:06 ./usr/share/
drwxr-xr-x root/root 0 2016-07-17 11:06 ./usr/share/doc/
drwxr-xr-x root/root 0 2016-07-17 11:06 ./usr/share/doc/murasaki-mpi/
-rw-r--r-- root/root 249 2016-07-12 07:25 ./usr/share/doc/murasaki-mpi/README.test
-rw-r--r-- root/root 708 2016-07-12 07:25 ./usr/share/doc/murasaki-mpi/changelog.Debian.gz
-rw-r--r-- root/root 2221 2016-07-12 07:25 ./usr/share/doc/murasaki-mpi/copyright
drwxr-xr-x root/root 0 2016-07-17 11:06 ./usr/share/man/
drwxr-xr-x root/root 0 2016-07-17 11:06 ./usr/share/man/man1/
lrwxrwxrwx root/root 0 2016-07-17 11:06 ./usr/share/man/man1/geneparse-mpi.1.gz -> geneparse.1.gz
lrwxrwxrwx root/root 0 2016-07-17 11:06 ./usr/share/man/man1/mbfa-mpi.1.gz -> mbfa.1.gz
lrwxrwxrwx root/root 0 2016-07-17 11:06 ./usr/share/man/man1/murasaki-mpi.1.gz -> murasaki.1.gz
murasaki_1.68.6-6_armhf.deb
---------------------------
new debian package, version 2.0.
size 372096 bytes: control archive=1399 bytes.
1158 bytes, 23 lines control
1182 bytes, 19 lines md5sums
Package: murasaki
Version: 1.68.6-6
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 2380
Depends: murasaki-common, libboost-filesystem1.58.0, libboost-iostreams1.58.0, libboost-regex1.58.0, libboost-system1.58.0, libc6 (>= 2.4), libcrypto++6, libgcc1 (>= 1:3.5), libstdc++6 (>= 5.2)
Section: science
Priority: optional
Homepage: http://murasaki.dna.bio.keio.ac.jp/wiki/
Description: homology detection tool across multiple large genomes
Murasaki is a scalable and fast, language theory-based homology
detection tool across multiple large genomes. It enable whole-genome
scale multiple genome global alignments. Supports unlimited length
gapped-seed patterns and unique TF-IDF based filtering.
.
Murasaki is an anchor alignment software, which is
* exteremely fast (17 CPU hours for whole Human x Mouse genome (with
40 nodes: 52 wall minutes))
* scalable (Arbitrarily parallelizable across multiple nodes using MPI.
Even a single node with 16GB of ram can handle over 1Gbp of sequence.)
* unlimited pattern length
* repeat tolerant
* intelligent noise reduction
drwxr-xr-x root/root 0 2016-07-17 11:07 ./
drwxr-xr-x root/root 0 2016-07-17 11:06 ./usr/
drwxr-xr-x root/root 0 2016-07-17 11:07 ./usr/bin/
-rwxr-xr-x root/root 181952 2016-07-17 11:07 ./usr/bin/geneparse
-rwxr-xr-x root/root 218752 2016-07-17 11:07 ./usr/bin/mbfa
-rwxr-xr-x root/root 502528 2016-07-17 11:07 ./usr/bin/murasaki
drwxr-xr-x root/root 0 2016-07-17 11:06 ./usr/lib/
drwxr-xr-x root/root 0 2016-07-17 11:07 ./usr/lib/murasaki/
-rwxr-xr-x root/root 144992 2016-07-17 11:07 ./usr/lib/murasaki/align-and
-rwxr-xr-x root/root 149104 2016-07-17 11:07 ./usr/lib/murasaki/align-best
-rwxr-xr-x root/root 165504 2016-07-17 11:07 ./usr/lib/murasaki/align-compare
-rwxr-xr-x root/root 226944 2016-07-17 11:07 ./usr/lib/murasaki/align-coverage
-rwxr-xr-x root/root 140880 2016-07-17 11:07 ./usr/lib/murasaki/align-or
-rwxr-xr-x root/root 79424 2016-07-17 11:07 ./usr/lib/murasaki/cgr-compare
-rwxr-xr-x root/root 231100 2016-07-17 11:07 ./usr/lib/murasaki/cgr-image
-rwxr-xr-x root/root 83540 2016-07-17 11:07 ./usr/lib/murasaki/cgr-random
-rwxr-xr-x root/root 222884 2016-07-17 11:07 ./usr/lib/murasaki/cgr-sample
-rwxr-xr-x root/root 50692 2016-07-17 11:07 ./usr/lib/murasaki/testeco
drwxr-xr-x root/root 0 2016-07-17 11:06 ./usr/share/
drwxr-xr-x root/root 0 2016-07-17 11:06 ./usr/share/doc/
drwxr-xr-x root/root 0 2016-07-17 11:06 ./usr/share/doc/murasaki/
-rw-r--r-- root/root 249 2016-07-12 07:25 ./usr/share/doc/murasaki/README.test
-rw-r--r-- root/root 708 2016-07-12 07:25 ./usr/share/doc/murasaki/changelog.Debian.gz
-rw-r--r-- root/root 2221 2016-07-12 07:25 ./usr/share/doc/murasaki/copyright
drwxr-xr-x root/root 0 2016-07-17 11:06 ./usr/share/man/
drwxr-xr-x root/root 0 2016-07-17 11:06 ./usr/share/man/man1/
-rw-r--r-- root/root 2518 2016-07-17 11:06 ./usr/share/man/man1/geneparse.1.gz
-rw-r--r-- root/root 2721 2016-07-17 11:06 ./usr/share/man/man1/mbfa.1.gz
-rw-r--r-- root/root 10888 2016-07-17 11:06 ./usr/share/man/man1/murasaki.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 143252
Build-Time: 2036
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 395
Job: murasaki_1.68.6-6
Machine Architecture: armhf
Package: murasaki
Package-Time: 2480
Source-Version: 1.68.6-6
Space: 143252
Status: successful
Version: 1.68.6-6
--------------------------------------------------------------------------------
Finished at 20160717-1109
Build needed 00:41:20, 143252k disc space