Raspbian Package Auto-Building

Build log for murasaki (1.68.6-6+b4) on armhf

murasaki → 1.68.6-6+b4 → armhf → 2022-03-29 17:31:38 

sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on testwandboard

+==============================================================================+
| murasaki 1.68.6-6+b4 (armhf)                 Tue, 29 Mar 2022 16:42:07 +0000 |
+==============================================================================+

Package: murasaki
Version: 1.68.6-6+b4
Source Version: 1.68.6-6
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-900c4fba-a78e-4405-ae0a-748c5c1ad2de' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.4.1/private stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private stretch-staging/main Sources [9730 kB]
Get:3 http://172.17.4.1/private stretch-staging/main armhf Packages [11.7 MB]
Fetched 21.4 MB in 27s (793 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'murasaki' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/murasaki.git
Please use:
git clone https://anonscm.debian.org/git/debian-med/murasaki.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 317 kB of source archives.
Get:1 http://172.17.4.1/private stretch-staging/main murasaki 1.68.6-6 (dsc) [2213 B]
Get:2 http://172.17.4.1/private stretch-staging/main murasaki 1.68.6-6 (tar) [308 kB]
Get:3 http://172.17.4.1/private stretch-staging/main murasaki 1.68.6-6 (diff) [6920 B]
Fetched 317 kB in 0s (1919 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/murasaki-3jZUYU/murasaki-1.68.6' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/murasaki-3jZUYU' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install build-essential                                                      |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-0FOL5q/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-0FOL5q/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-0FOL5q/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg:               imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg:              unchanged: 1
gpg:       secret keys read: 1
gpg:   secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-0FOL5q/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-0FOL5q/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-0FOL5q/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-0FOL5q/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-0FOL5q/apt_archive ./ Packages [432 B]
Fetched 2108 B in 0s (2926 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  fuse2fs gnupg-l10n kbd libfuse2 manpages netbase psmisc
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 29 not upgraded.
Need to get 770 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-0FOL5q/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [770 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 770 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 13336 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any all)

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper (>= 9), libboost-regex-dev, libboost-iostreams-dev, libboost-filesystem-dev, libterm-readkey-perl, libtext-wrapper-perl, libcrypto++-dev, libpstreams-dev, libopenmpi-dev
Filtered Build-Depends: debhelper (>= 9), libboost-regex-dev, libboost-iostreams-dev, libboost-filesystem-dev, libterm-readkey-perl, libtext-wrapper-perl, libcrypto++-dev, libpstreams-dev, libopenmpi-dev
dpkg-deb: building package 'sbuild-build-depends-murasaki-dummy' in '/<<BUILDDIR>>/resolver-0FOL5q/apt_archive/sbuild-build-depends-murasaki-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy sbuild-build-depends-murasaki-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-0FOL5q/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-0FOL5q/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-0FOL5q/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-0FOL5q/apt_archive ./ Sources [560 B]
Get:5 copy:/<<BUILDDIR>>/resolver-0FOL5q/apt_archive ./ Packages [642 B]
Fetched 2535 B in 0s (3603 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install murasaki build dependencies (apt-based resolver)
--------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  fuse2fs gnupg-l10n kbd libfuse2 manpages netbase psmisc
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils debhelper
  dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base
  icu-devtools intltool-debian libarchive-zip-perl libboost-filesystem-dev
  libboost-filesystem1.62-dev libboost-filesystem1.62.0 libboost-iostreams-dev
  libboost-iostreams1.62-dev libboost-iostreams1.62.0 libboost-regex-dev
  libboost-regex1.62-dev libboost-regex1.62.0 libboost-system1.62-dev
  libboost-system1.62.0 libboost1.62-dev libbsd0 libcroco3 libcrypto++-dev
  libcrypto++6 libffi6 libfile-stripnondeterminism-perl libgfortran3
  libglib2.0-0 libhwloc-dev libhwloc-plugins libhwloc5 libibverbs-dev
  libibverbs1 libicu-dev libicu57 libjs-jquery libltdl-dev libltdl7
  libmagic-mgc libmagic1 libnl-3-200 libnl-route-3-200 libopenmpi-dev
  libopenmpi2 libpciaccess0 libpipeline1 libpstreams-dev libsigsegv2
  libterm-readkey-perl libtext-wrapper-perl libtimedate-perl libtool
  libunistring0 libxml2 m4 man-db ocl-icd-libopencl1 openmpi-common po-debconf
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
  vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff
  libboost1.62-doc libboost-atomic1.62-dev libboost-chrono1.62-dev
  libboost-context1.62-dev libboost-coroutine1.62-dev
  libboost-date-time1.62-dev libboost-exception1.62-dev libboost-fiber1.62-dev
  libboost-graph1.62-dev libboost-graph-parallel1.62-dev
  libboost-locale1.62-dev libboost-log1.62-dev libboost-math1.62-dev
  libboost-mpi1.62-dev libboost-mpi-python1.62-dev
  libboost-program-options1.62-dev libboost-python1.62-dev
  libboost-random1.62-dev libboost-serialization1.62-dev
  libboost-signals1.62-dev libboost-test1.62-dev libboost-thread1.62-dev
  libboost-timer1.62-dev libboost-type-erasure1.62-dev libboost-wave1.62-dev
  libboost1.62-tools-dev libmpfrc++-dev libntl-dev libhwloc-contrib-plugins
  icu-doc libtool-doc openmpi-doc pciutils gfortran | fortran95-compiler
  gcj-jdk m4-doc less www-browser opencl-icd libmail-box-perl
Recommended packages:
  curl | wget | lynx-cur libglib2.0-data shared-mime-info xdg-user-dirs
  javascript-common openmpi-bin xml-core libmail-sendmail-perl
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils debhelper
  dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base
  icu-devtools intltool-debian libarchive-zip-perl libboost-filesystem-dev
  libboost-filesystem1.62-dev libboost-filesystem1.62.0 libboost-iostreams-dev
  libboost-iostreams1.62-dev libboost-iostreams1.62.0 libboost-regex-dev
  libboost-regex1.62-dev libboost-regex1.62.0 libboost-system1.62-dev
  libboost-system1.62.0 libboost1.62-dev libbsd0 libcroco3 libcrypto++-dev
  libcrypto++6 libffi6 libfile-stripnondeterminism-perl libgfortran3
  libglib2.0-0 libhwloc-dev libhwloc-plugins libhwloc5 libibverbs-dev
  libibverbs1 libicu-dev libicu57 libjs-jquery libltdl-dev libltdl7
  libmagic-mgc libmagic1 libnl-3-200 libnl-route-3-200 libopenmpi-dev
  libopenmpi2 libpciaccess0 libpipeline1 libpstreams-dev libsigsegv2
  libterm-readkey-perl libtext-wrapper-perl libtimedate-perl libtool
  libunistring0 libxml2 m4 man-db ocl-icd-libopencl1 openmpi-common po-debconf
  sbuild-build-depends-murasaki-dummy
0 upgraded, 67 newly installed, 0 to remove and 29 not upgraded.
Need to get 49.5 MB/49.6 MB of archives.
After this operation, 290 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-0FOL5q/apt_archive ./ sbuild-build-depends-murasaki-dummy 0.invalid.0 [848 B]
Get:2 http://172.17.4.1/private stretch-staging/main armhf groff-base armhf 1.22.3-9 [1005 kB]
Get:3 http://172.17.4.1/private stretch-staging/main armhf libbsd0 armhf 0.8.3-1+deb9u1 [88.2 kB]
Get:4 http://172.17.4.1/private stretch-staging/main armhf bsdmainutils armhf 9.0.12+nmu1 [178 kB]
Get:5 http://172.17.4.1/private stretch-staging/main armhf libpipeline1 armhf 1.4.1-2 [23.7 kB]
Get:6 http://172.17.4.1/private stretch-staging/main armhf man-db armhf 2.7.6.1-2 [1014 kB]
Get:7 http://172.17.4.1/private stretch-staging/main armhf libmagic-mgc armhf 1:5.30-1+deb9u3 [222 kB]
Get:8 http://172.17.4.1/private stretch-staging/main armhf libmagic1 armhf 1:5.30-1+deb9u3 [105 kB]
Get:9 http://172.17.4.1/private stretch-staging/main armhf file armhf 1:5.30-1+deb9u3 [63.7 kB]
Get:10 http://172.17.4.1/private stretch-staging/main armhf gettext-base armhf 0.19.8.1-2+deb9u1 [117 kB]
Get:11 http://172.17.4.1/private stretch-staging/main armhf libicu57 armhf 57.1-6+deb9u5 [7427 kB]
Get:12 http://172.17.4.1/private stretch-staging/main armhf libxml2 armhf 2.9.4+dfsg1-2.2+deb9u5 [807 kB]
Get:13 http://172.17.4.1/private stretch-staging/main armhf libsigsegv2 armhf 2.10-5 [28.4 kB]
Get:14 http://172.17.4.1/private stretch-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:15 http://172.17.4.1/private stretch-staging/main armhf autoconf all 2.69-10 [338 kB]
Get:16 http://172.17.4.1/private stretch-staging/main armhf autotools-dev all 20161112.1 [73.4 kB]
Get:17 http://172.17.4.1/private stretch-staging/main armhf automake all 1:1.15-6 [733 kB]
Get:18 http://172.17.4.1/private stretch-staging/main armhf autopoint all 0.19.8.1-2+deb9u1 [433 kB]
Get:19 http://172.17.4.1/private stretch-staging/main armhf libtool all 2.4.6-2 [545 kB]
Get:20 http://172.17.4.1/private stretch-staging/main armhf dh-autoreconf all 14 [15.9 kB]
Get:21 http://172.17.4.1/private stretch-staging/main armhf libarchive-zip-perl all 1.59-1+deb9u1 [96.2 kB]
Get:22 http://172.17.4.1/private stretch-staging/main armhf libfile-stripnondeterminism-perl all 0.034-1 [16.4 kB]
Get:23 http://172.17.4.1/private stretch-staging/main armhf libtimedate-perl all 2.3000-2+deb9u1 [37.9 kB]
Get:24 http://172.17.4.1/private stretch-staging/main armhf dh-strip-nondeterminism all 0.034-1 [10.5 kB]
Get:25 http://172.17.4.1/private stretch-staging/main armhf libglib2.0-0 armhf 2.50.3-2+deb9u2 [2528 kB]
Get:26 http://172.17.4.1/private stretch-staging/main armhf libcroco3 armhf 0.6.11-3 [131 kB]
Get:27 http://172.17.4.1/private stretch-staging/main armhf libunistring0 armhf 0.9.6+really0.9.3-0.1 [252 kB]
Get:28 http://172.17.4.1/private stretch-staging/main armhf gettext armhf 0.19.8.1-2+deb9u1 [1418 kB]
Get:29 http://172.17.4.1/private stretch-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:30 http://172.17.4.1/private stretch-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:31 http://172.17.4.1/private stretch-staging/main armhf debhelper all 10.2.5 [961 kB]
Get:32 http://172.17.4.1/private stretch-staging/main armhf icu-devtools armhf 57.1-6+deb9u5 [157 kB]
Get:33 http://172.17.4.1/private stretch-staging/main armhf libboost1.62-dev armhf 1.62.0+dfsg-4 [7009 kB]
Get:34 http://172.17.4.1/private stretch-staging/main armhf libboost-system1.62.0 armhf 1.62.0+dfsg-4 [32.1 kB]
Get:35 http://172.17.4.1/private stretch-staging/main armhf libboost-filesystem1.62.0 armhf 1.62.0+dfsg-4 [58.0 kB]
Get:36 http://172.17.4.1/private stretch-staging/main armhf libboost-system1.62-dev armhf 1.62.0+dfsg-4 [33.1 kB]
Get:37 http://172.17.4.1/private stretch-staging/main armhf libboost-filesystem1.62-dev armhf 1.62.0+dfsg-4 [66.1 kB]
Get:38 http://172.17.4.1/private stretch-staging/main armhf libboost-filesystem-dev armhf 1.62.0.1+b4 [3732 B]
Get:39 http://172.17.4.1/private stretch-staging/main armhf libboost-regex1.62.0 armhf 1.62.0+dfsg-4 [232 kB]
Get:40 http://172.17.4.1/private stretch-staging/main armhf libicu-dev armhf 57.1-6+deb9u5 [15.8 MB]
Get:41 http://172.17.4.1/private stretch-staging/main armhf libboost-regex1.62-dev armhf 1.62.0+dfsg-4 [325 kB]
Get:42 http://172.17.4.1/private stretch-staging/main armhf libboost-iostreams1.62.0 armhf 1.62.0+dfsg-4 [48.7 kB]
Get:43 http://172.17.4.1/private stretch-staging/main armhf libboost-iostreams1.62-dev armhf 1.62.0+dfsg-4 [57.7 kB]
Get:44 http://172.17.4.1/private stretch-staging/main armhf libboost-iostreams-dev armhf 1.62.0.1+b4 [3694 B]
Get:45 http://172.17.4.1/private stretch-staging/main armhf libboost-regex-dev armhf 1.62.0.1+b4 [3962 B]
Get:46 http://172.17.4.1/private stretch-staging/main armhf libcrypto++6 armhf 5.6.4-7 [748 kB]
Get:47 http://172.17.4.1/private stretch-staging/main armhf libcrypto++-dev armhf 5.6.4-7 [1347 kB]
Get:48 http://172.17.4.1/private stretch-staging/main armhf libgfortran3 armhf 6.3.0-18+rpi1+deb9u1 [166 kB]
Get:49 http://172.17.4.1/private stretch-staging/main armhf libjs-jquery all 3.1.1-2+deb9u2 [154 kB]
Get:50 http://172.17.4.1/private stretch-staging/main armhf libltdl7 armhf 2.4.6-2 [386 kB]
Get:51 http://172.17.4.1/private stretch-staging/main armhf libltdl-dev armhf 2.4.6-2 [159 kB]
Get:52 http://172.17.4.1/private stretch-staging/main armhf libnl-3-200 armhf 3.2.27-2 [53.7 kB]
Get:53 http://172.17.4.1/private stretch-staging/main armhf libnl-route-3-200 armhf 3.2.27-2 [113 kB]
Get:54 http://172.17.4.1/private stretch-staging/main armhf libpciaccess0 armhf 0.13.4-1 [47.4 kB]
Get:55 http://172.17.4.1/private stretch-staging/main armhf libpstreams-dev all 1.0.0-1 [129 kB]
Get:56 http://172.17.4.1/private stretch-staging/main armhf libterm-readkey-perl armhf 2.37-1 [26.3 kB]
Get:57 http://172.17.4.1/private stretch-staging/main armhf libtext-wrapper-perl all 1.05-2 [11.0 kB]
Get:58 http://172.17.4.1/private stretch-staging/main armhf libhwloc5 armhf 1.11.5-1+rpi1 [83.2 kB]
Get:59 http://172.17.4.1/private stretch-staging/main armhf libhwloc-dev armhf 1.11.5-1+rpi1 [136 kB]
Get:60 http://172.17.4.1/private stretch-staging/main armhf ocl-icd-libopencl1 armhf 2.2.11-1 [35.5 kB]
Get:61 http://172.17.4.1/private stretch-staging/main armhf libhwloc-plugins armhf 1.11.5-1+rpi1 [14.9 kB]
Get:62 http://172.17.4.1/private stretch-staging/main armhf libibverbs1 armhf 1.2.1-2 [35.4 kB]
Get:63 http://172.17.4.1/private stretch-staging/main armhf libibverbs-dev armhf 1.2.1-2 [104 kB]
Get:64 http://172.17.4.1/private stretch-staging/main armhf libopenmpi2 armhf 2.0.2-2 [1702 kB]
Get:65 http://172.17.4.1/private stretch-staging/main armhf openmpi-common all 2.0.2-2 [149 kB]
Get:66 http://172.17.4.1/private stretch-staging/main armhf libopenmpi-dev armhf 2.0.2-2 [1007 kB]
debconf: delaying package configuration, since apt-utils is not installed
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W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.28-5 dpkg-dev_1.18.25 g++-6_6.3.0-18+rpi1+deb9u1 gcc-6_6.3.0-18+rpi1+deb9u1 libc6-dev_2.24-11+deb9u4 libstdc++-6-dev_6.3.0-18+rpi1+deb9u1 libstdc++6_6.3.0-18+rpi1+deb9u1 linux-libc-dev_4.9.82-1+deb9u3+rpi1
Package versions: adduser_3.115 apt_1.4.9 autoconf_2.69-10 automake_1:1.15-6 autopoint_0.19.8.1-2+deb9u1 autotools-dev_20161112.1 base-files_9.9+rpi1+deb9u11 base-passwd_3.5.43 bash_4.4-5 binutils_2.28-5 bsdmainutils_9.0.12+nmu1 bsdutils_1:2.29.2-1+deb9u1 build-essential_12.3 bzip2_1.0.6-8.1 coreutils_8.26-3 cpio_2.11+dfsg-6 cpp_4:6.3.0-4 cpp-6_6.3.0-18+rpi1+deb9u1 dash_0.5.8-2.4 debconf_1.5.61 debfoster_2.7-2.1 debhelper_10.2.5 debianutils_4.8.1.1 dh-autoreconf_14 dh-strip-nondeterminism_0.034-1 diffutils_1:3.5-3 dmsetup_2:1.02.137-2 dpkg_1.18.25 dpkg-dev_1.18.25 e2fslibs_1.43.4-2+deb9u1 e2fsprogs_1.43.4-2+deb9u1 fakeroot_1.21-3.1 file_1:5.30-1+deb9u3 findutils_4.6.0+git+20161106-2 fuse2fs_1.43.4-2+deb9u1 g++_4:6.3.0-4 g++-6_6.3.0-18+rpi1+deb9u1 gcc_4:6.3.0-4 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-14 gcc-6_6.3.0-18+rpi1+deb9u1 gcc-6-base_6.3.0-18+rpi1+deb9u1 gettext_0.19.8.1-2+deb9u1 gettext-base_0.19.8.1-2+deb9u1 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libboost-system1.62.0_1.62.0+dfsg-4 libboost1.62-dev_1.62.0+dfsg-4 libbsd0_0.8.3-1+deb9u1 libbz2-1.0_1.0.6-8.1 libc-bin_2.24-11+deb9u4 libc-dev-bin_2.24-11+deb9u4 libc6_2.24-11+deb9u4 libc6-dev_2.24-11+deb9u4 libcap-ng0_0.7.7-3 libcap2_1:2.25-1 libcap2-bin_1:2.25-1 libcc1-0_6.3.0-18+rpi1+deb9u1 libcomerr2_1.43.4-2+deb9u1 libcroco3_0.6.11-3 libcrypto++-dev_5.6.4-7 libcrypto++6_5.6.4-7 libcryptsetup4_2:1.7.3-4 libdb5.3_5.3.28-12+deb9u1 libdbus-1-3_1.10.28-0+deb9u1 libdebconfclient0_0.227 libdevmapper1.02.1_2:1.02.137-2 libdpkg-perl_1.18.25 libdrm2_2.4.74-1 libfakeroot_1.21-3.1 libfdisk1_2.29.2-1+deb9u1 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.034-1 libfuse2_2.9.7-1+deb9u2 libgc1c2_1:7.4.2-8 libgcc-6-dev_6.3.0-18+rpi1+deb9u1 libgcc1_1:6.3.0-18+rpi1+deb9u1 libgcrypt20_1.7.6-2+deb9u3 libgdbm3_1.8.3-14 libgfortran3_6.3.0-18+rpi1+deb9u1 libglib2.0-0_2.50.3-2+deb9u2 libgmp10_2:6.1.2+dfsg-1 libgomp1_6.3.0-18+rpi1+deb9u1 libgpg-error0_1.26-2 libhwloc-dev_1.11.5-1+rpi1 libhwloc-plugins_1.11.5-1+rpi1 libhwloc5_1.11.5-1+rpi1 libibverbs-dev_1.2.1-2 libibverbs1_1.2.1-2 libicu-dev_57.1-6+deb9u5 libicu57_57.1-6+deb9u5 libidn11_1.33-1 libip4tc0_1.6.0+snapshot20161117-6 libisl15_0.18-1 libjs-jquery_3.1.1-2+deb9u2 libklibc_2.0.4-9+rpi1 libkmod2_23-2 libksba8_1.3.5-2 libltdl-dev_2.4.6-2 libltdl7_2.4.6-2 liblz4-1_0.0~r131-2 liblzma5_5.2.2-1.2 libmagic-mgc_1:5.30-1+deb9u3 libmagic1_1:5.30-1+deb9u3 libmount1_2.29.2-1+deb9u1 libmpc3_1.0.3-1 libmpfr4_3.1.5-1 libncurses5_6.0+20161126-1+deb9u2 libncursesw5_6.0+20161126-1+deb9u2 libnl-3-200_3.2.27-2 libnl-route-3-200_3.2.27-2 libnpth0_1.3-1 libopenmpi-dev_2.0.2-2 libopenmpi2_2.0.2-2 libpam-modules_1.1.8-3.6 libpam-modules-bin_1.1.8-3.6 libpam-runtime_1.1.8-3.6 libpam0g_1.1.8-3.6 libpciaccess0_0.13.4-1 libpcre3_2:8.39-3 libperl5.24_5.24.1-3+deb9u5 libpipeline1_1.4.1-2 libpng12-0_1.2.54-6 libprocps6_2:3.3.12-3+deb9u1 libpstreams-dev_1.0.0-1 libreadline7_7.0-3 libseccomp2_2.3.1-2.1+deb9u1 libselinux1_2.6-3 libsemanage-common_2.6-2 libsemanage1_2.6-2 libsepol1_2.6-2 libsigsegv2_2.10-5 libsmartcols1_2.29.2-1+deb9u1 libsqlite3-0_3.16.2-5+deb9u1 libss2_1.43.4-2+deb9u1 libstdc++-6-dev_6.3.0-18+rpi1+deb9u1 libstdc++6_6.3.0-18+rpi1+deb9u1 libsystemd0_232-25+deb9u12 libterm-readkey-perl_2.37-1 libtext-wrapper-perl_1.05-2 libtimedate-perl_2.3000-2+deb9u1 libtinfo5_6.0+20161126-1+deb9u2 libtool_2.4.6-2 libubsan0_6.3.0-18+rpi1+deb9u1 libudev1_232-25+deb9u12 libunistring0_0.9.6+really0.9.3-0.1 libusb-0.1-4_2:0.1.12-30 libustr-1.0-1_1.0.4-6 libuuid1_2.29.2-1+deb9u1 libxml2_2.9.4+dfsg1-2.2+deb9u5 linux-libc-dev_4.9.82-1+deb9u3+rpi1 login_1:4.4-4.1 lsb-base_9.20161125+rpi1 m4_1.4.18-1 make_4.1-9.1 makedev_2.3.1-93 man-db_2.7.6.1-2 manpages_4.10-2 mawk_1.3.3-17 mount_2.29.2-1+deb9u1 multiarch-support_2.24-11+deb9u4 ncurses-base_6.0+20161126-1+deb9u2 ncurses-bin_6.0+20161126-1+deb9u2 netbase_5.4 ocl-icd-libopencl1_2.2.11-1 openmpi-common_2.0.2-2 passwd_1:4.4-4.1 patch_2.7.5-1+deb9u2 perl_5.24.1-3+deb9u5 perl-base_5.24.1-3+deb9u5 perl-modules-5.24_5.24.1-3+deb9u5 pinentry-curses_1.0.0-2 po-debconf_1.0.20 procps_2:3.3.12-3+deb9u1 psmisc_22.21-2.1 raspbian-archive-keyring_20120528.2 readline-common_7.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-murasaki-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.9+deb9u1 startpar_0.59-3.1 systemd_232-25+deb9u12 systemd-sysv_232-25+deb9u12 sysv-rc_2.88dsf-59.9 sysvinit-utils_2.88dsf-59.9 tar_1.29b-1.1 tzdata_2019c-0+deb9u1 udev_232-25+deb9u12 util-linux_2.29.2-1+deb9u1 xz-utils_5.2.2-1.2 zlib1g_1:1.2.8.dfsg-5

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Tue Jul 12 07:30:27 2016 UTC
gpgv:                using RSA key 578A0494D1C646D1
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./murasaki_1.68.6-6.dsc
dpkg-source: info: extracting murasaki in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking murasaki_1.68.6.orig.tar.gz
dpkg-source: info: unpacking murasaki_1.68.6-6.debian.tar.xz
dpkg-source: info: applying use_proper_libboost_names.patch
dpkg-source: info: applying include_libpstream.patch
dpkg-source: info: applying hardening.patch
dpkg-source: info: applying spelling.patch
dpkg-source: info: applying man_syntax.patch
dpkg-source: info: applying freebsd.patch
dpkg-source: info: applying gcc-6.patch

Check disc space
----------------

Sufficient free space for build

Hack binNMU version
-------------------

Created changelog entry for binNMU version 1.68.6-6+b4

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-900c4fba-a78e-4405-ae0a-748c5c1ad2de
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package murasaki
dpkg-buildpackage: info: source version 1.68.6-6+b4
dpkg-buildpackage: info: source distribution stretch-staging
 dpkg-source --before-build murasaki-1.68.6
dpkg-buildpackage: info: host architecture armhf
 fakeroot debian/rules clean
dh clean
   dh_testdir
   dh_auto_clean
	make -j1 clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
rm -rf *.o *~ .*~ core
make -C src clean
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
rm -rf *.o *~ .*~ core ../murasaki ../cgr-image ../cgr-compare ../cgr-random ../cgr-sample ../testeco ../align-compare ../align-or ../geneparse ../align-and ../align-best ../align-coverage ../getsegments ../mbfa
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_clean
 debian/rules build-arch
dh build-arch
   dh_testdir -a
   dh_update_autotools_config -a
   dh_auto_configure -a
   debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_build -- USE_MPI=YES
	make -j1 USE_MPI=YES
make[2]: Entering directory '/<<PKGBUILDDIR>>'
make -C src all
make[3]: Entering directory '/<<PKGBUILDDIR>>/src'
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c murasaki.cc
murasaki.cc: In function 'void procLocs(LocList&, std::__cxx11::list<Location>&, int, int)':
murasaki.cc:1008:8: warning: variable 'revZero' set but not used [-Wunused-but-set-variable]
   bool revZero=false;
        ^~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
                 from murasaki.cc:31:
/usr/include/c++/6/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:449:5: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' will change in GCC 7.1
     vector<_Tp, _Alloc>::
     ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:64:0,
                 from murasaki.cc:31:
/usr/include/c++/6/bits/stl_vector.h: In member function 'void MurasakiRuntime::prep()':
/usr/include/c++/6/bits/stl_vector.h:1055:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
  _M_fill_insert(begin() + __offset, __n, __x);
  ^~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1055:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
  _M_fill_insert(begin() + __offset, __n, __x);
  ^~~~~~~~~~~~~~
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c timing.cc
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c dinkymath.cc
dinkymath.cc: In function 'std::__cxx11::string littleEndianStr(unsigned int, int)':
dinkymath.cc:40:7: warning: variable 'last' set but not used [-Wunused-but-set-variable]
   int last=0;
       ^~~~
dinkymath.cc: In function 'std::__cxx11::string littleEndianPat(unsigned int, int)':
dinkymath.cc:53:7: warning: variable 'last' set but not used [-Wunused-but-set-variable]
   int last=0;
       ^~~~
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c sequence.cc
sequence.cc: In destructor 'Sequence::~Sequence()':
sequence.cc:377:123: warning: throw will always call terminate() [-Wterminate]
  throw MurasakiException("Couldn't mark System V IPC shared memory region for deletion for sequence "+name+strerror(errno));
                                                                                                                           ^
sequence.cc:377:123: note: in C++11 destructors default to noexcept
sequence.cc: In destructor 'BitSequence::~BitSequence()':
sequence.cc:1394:133: warning: throw will always call terminate() [-Wterminate]
  throw MurasakiException("Couldn't detach System V shared memory region for "+(seq ? seq->filename:string("(anon)"))+strerror(errno));
                                                                                                                                     ^
sequence.cc:1394:133: note: in C++11 destructors default to noexcept
sequence.cc: In member function 'std::pair<double, long int> IntervalSet::entropy() const':
sequence.cc:3332:10: warning: variable 'shortest' set but not used [-Wunused-but-set-variable]
   SeqPos shortest=0,shortlen=length(spaces[0]);
          ^~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
                 from scoring.h:27,
                 from sequence.h:31,
                 from murasaki.h:24,
                 from sequence.cc:28:
/usr/include/c++/6/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:449:5: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' will change in GCC 7.1
     vector<_Tp, _Alloc>::
     ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:449:5: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:64:0,
                 from scoring.h:27,
                 from sequence.h:31,
                 from murasaki.h:24,
                 from sequence.cc:28:
/usr/include/c++/6/bits/stl_vector.h: In member function 'double HashMethod::fitnessCheck()':
/usr/include/c++/6/bits/stl_vector.h:1055:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
  _M_fill_insert(begin() + __offset, __n, __x);
  ^~~~~~~~~~~~~~
In file included from /usr/include/c++/6/algorithm:62:0,
                 from /usr/include/boost/regex/v4/regex_workaround.hpp:33,
                 from /usr/include/boost/regex/v4/regex.hpp:32,
                 from /usr/include/boost/regex.hpp:31,
                 from seqread.h:33,
                 from binseq.hh:31,
                 from sequence.h:32,
                 from murasaki.h:24,
                 from sequence.cc:28:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<HashMethod*, std::vector<HashMethod> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<HashMethod*, std::vector<HashMethod> >' will change in GCC 7.1
     __insertion_sort(_RandomAccessIterator __first,
     ^~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<HashMethod*, std::vector<HashMethod> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algo.h:61:0,
                 from /usr/include/c++/6/algorithm:62,
                 from /usr/include/boost/regex/v4/regex_workaround.hpp:33,
                 from /usr/include/boost/regex/v4/regex.hpp:32,
                 from /usr/include/boost/regex.hpp:31,
                 from seqread.h:33,
                 from binseq.hh:31,
                 from sequence.h:32,
                 from murasaki.h:24,
                 from sequence.cc:28:
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<HashMethod*, std::vector<HashMethod> >; _Distance = int; _Tp = HashMethod; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_heap.h:209:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<HashMethod*, std::vector<HashMethod> >' will change in GCC 7.1
     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
     ^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<HashMethod*, std::vector<HashMethod> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_heap.h:319:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<HashMethod*, std::vector<HashMethod> >' will change in GCC 7.1
     __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
     ^~~~~~~~~~~
/usr/include/c++/6/bits/stl_heap.h:319:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<HashMethod*, std::vector<HashMethod> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<HashMethod*, std::vector<HashMethod> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_heap.h:237:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<HashMethod*, std::vector<HashMethod> >' will change in GCC 7.1
     __pop_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
     ^~~~~~~~~~
/usr/include/c++/6/bits/stl_heap.h:237:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<HashMethod*, std::vector<HashMethod> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h:237:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<HashMethod*, std::vector<HashMethod> >' will change in GCC 7.1
In file included from /usr/include/c++/6/algorithm:62:0,
                 from /usr/include/boost/regex/v4/regex_workaround.hpp:33,
                 from /usr/include/boost/regex/v4/regex.hpp:32,
                 from /usr/include/boost/regex.hpp:31,
                 from seqread.h:33,
                 from binseq.hh:31,
                 from sequence.h:32,
                 from murasaki.h:24,
                 from sequence.cc:28:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<HashMethod*, std::vector<HashMethod> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<HashMethod*, std::vector<HashMethod> >' will change in GCC 7.1
     __introsort_loop(_RandomAccessIterator __first,
     ^~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<HashMethod*, std::vector<HashMethod> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1669:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<HashMethod*, std::vector<HashMethod> >' will change in GCC 7.1
       std::__make_heap(__first, __middle, __comp);
       ^~~
In file included from /usr/include/c++/6/bits/stl_algo.h:61:0,
                 from /usr/include/c++/6/algorithm:62,
                 from /usr/include/boost/regex/v4/regex_workaround.hpp:33,
                 from /usr/include/boost/regex/v4/regex.hpp:32,
                 from /usr/include/boost/regex.hpp:31,
                 from seqread.h:33,
                 from binseq.hh:31,
                 from sequence.h:32,
                 from murasaki.h:24,
                 from sequence.cc:28:
/usr/include/c++/6/bits/stl_heap.h:400:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<HashMethod*, std::vector<HashMethod> >' will change in GCC 7.1
    std::__pop_heap(__first, __last, __last, __comp);
    ^~~
/usr/include/c++/6/bits/stl_heap.h:400:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<HashMethod*, std::vector<HashMethod> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h:400:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<HashMethod*, std::vector<HashMethod> >' will change in GCC 7.1
In file included from /usr/include/c++/6/algorithm:62:0,
                 from /usr/include/boost/regex/v4/regex_workaround.hpp:33,
                 from /usr/include/boost/regex/v4/regex.hpp:32,
                 from /usr/include/boost/regex.hpp:31,
                 from seqread.h:33,
                 from binseq.hh:31,
                 from sequence.h:32,
                 from murasaki.h:24,
                 from sequence.cc:28:
/usr/include/c++/6/bits/stl_algo.h:1951:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<HashMethod*, std::vector<HashMethod> >' will change in GCC 7.1
    std::__introsort_loop(__cut, __last, __depth_limit, __comp);
    ^~~
/usr/include/c++/6/bits/stl_algo.h:1669:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<HashMethod*, std::vector<HashMethod> >' will change in GCC 7.1
       std::__make_heap(__first, __middle, __comp);
       ^~~
/usr/include/c++/6/bits/stl_algo.h: In member function 'void BitSequence::compileHashFunc()':
/usr/include/c++/6/bits/stl_algo.h:1965:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<HashMethod*, std::vector<HashMethod> >' will change in GCC 7.1
    std::__introsort_loop(__first, __last,
    ^~~
/usr/include/c++/6/bits/stl_algo.h:1882:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<HashMethod*, std::vector<HashMethod> >' will change in GCC 7.1
    std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
    ^~~
/usr/include/c++/6/bits/stl_algo.h:1887:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<HashMethod*, std::vector<HashMethod> >' will change in GCC 7.1
  std::__insertion_sort(__first, __last, __comp);
  ^~~
/usr/include/c++/6/bits/stl_algo.h:1965:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<HashMethod*, std::vector<HashMethod> >' will change in GCC 7.1
    std::__introsort_loop(__first, __last,
    ^~~
/usr/include/c++/6/bits/stl_algo.h:1882:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<HashMethod*, std::vector<HashMethod> >' will change in GCC 7.1
    std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
    ^~~
/usr/include/c++/6/bits/stl_algo.h:1887:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<HashMethod*, std::vector<HashMethod> >' will change in GCC 7.1
  std::__insertion_sort(__first, __last, __comp);
  ^~~
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c msethash.cc
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c options.cc
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c ecohash.cc
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c ecolist.cc
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c murasaki_mpi.cc
murasaki_mpi.cc: In function 'void mpi_types_init()':
murasaki_mpi.cc:107:3: warning: 'int MPI_Address(void*, MPI_Aint*)' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations]
   MPI_Address(&msg.key,disp);
   ^~~~~~~~~~~
In file included from murasaki_mpi.cc:29:0:
/usr/lib/arm-linux-gnueabihf/openmpi/include/mpi.h:1200:20: note: declared here
 OMPI_DECLSPEC  int MPI_Address(void *location, MPI_Aint *address)
                    ^~~~~~~~~~~
murasaki_mpi.cc:107:28: warning: 'int MPI_Address(void*, MPI_Aint*)' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations]
   MPI_Address(&msg.key,disp);
                            ^
In file included from murasaki_mpi.cc:29:0:
/usr/lib/arm-linux-gnueabihf/openmpi/include/mpi.h:1200:20: note: declared here
 OMPI_DECLSPEC  int MPI_Address(void *location, MPI_Aint *address)
                    ^~~~~~~~~~~
murasaki_mpi.cc:108:3: warning: 'int MPI_Address(void*, MPI_Aint*)' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations]
   MPI_Address(&msg.seqno,disp+1);
   ^~~~~~~~~~~
In file included from murasaki_mpi.cc:29:0:
/usr/lib/arm-linux-gnueabihf/openmpi/include/mpi.h:1200:20: note: declared here
 OMPI_DECLSPEC  int MPI_Address(void *location, MPI_Aint *address)
                    ^~~~~~~~~~~
murasaki_mpi.cc:108:32: warning: 'int MPI_Address(void*, MPI_Aint*)' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations]
   MPI_Address(&msg.seqno,disp+1);
                                ^
In file included from murasaki_mpi.cc:29:0:
/usr/lib/arm-linux-gnueabihf/openmpi/include/mpi.h:1200:20: note: declared here
 OMPI_DECLSPEC  int MPI_Address(void *location, MPI_Aint *address)
                    ^~~~~~~~~~~
murasaki_mpi.cc:109:3: warning: 'int MPI_Address(void*, MPI_Aint*)' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations]
   MPI_Address(&msg.pos,disp+1);
   ^~~~~~~~~~~
In file included from murasaki_mpi.cc:29:0:
/usr/lib/arm-linux-gnueabihf/openmpi/include/mpi.h:1200:20: note: declared here
 OMPI_DECLSPEC  int MPI_Address(void *location, MPI_Aint *address)
                    ^~~~~~~~~~~
murasaki_mpi.cc:109:30: warning: 'int MPI_Address(void*, MPI_Aint*)' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations]
   MPI_Address(&msg.pos,disp+1);
                              ^
In file included from murasaki_mpi.cc:29:0:
/usr/lib/arm-linux-gnueabihf/openmpi/include/mpi.h:1200:20: note: declared here
 OMPI_DECLSPEC  int MPI_Address(void *location, MPI_Aint *address)
                    ^~~~~~~~~~~
murasaki_mpi.cc:112:3: warning: 'int MPI_Type_struct(int, int*, MPI_Aint*, ompi_datatype_t**, ompi_datatype_t**)' is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations]
   MPI_Type_struct(3,blocklen,disp,type,&MPI_HashMessage_type);
   ^~~~~~~~~~~~~~~
In file included from murasaki_mpi.cc:29:0:
/usr/lib/arm-linux-gnueabihf/openmpi/include/mpi.h:1817:20: note: declared here
 OMPI_DECLSPEC  int MPI_Type_struct(int count, int array_of_blocklengths[],
                    ^~~~~~~~~~~~~~~
murasaki_mpi.cc:112:61: warning: 'int MPI_Type_struct(int, int*, MPI_Aint*, ompi_datatype_t**, ompi_datatype_t**)' is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations]
   MPI_Type_struct(3,blocklen,disp,type,&MPI_HashMessage_type);
                                                             ^
In file included from murasaki_mpi.cc:29:0:
/usr/lib/arm-linux-gnueabihf/openmpi/include/mpi.h:1817:20: note: declared here
 OMPI_DECLSPEC  int MPI_Type_struct(int count, int array_of_blocklengths[],
                    ^~~~~~~~~~~~~~~
murasaki_mpi.cc: In function 'void mpi_hasher_client_mode(BitSequence*)':
murasaki_mpi.cc:561:9: warning: variable 'send_done' set but not used [-Wunused-but-set-variable]
     int send_done;
         ^~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
                 from scoring.h:27,
                 from sequence.h:31,
                 from murasaki.h:24,
                 from murasaki_mpi.cc:33:
/usr/include/c++/6/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:449:5: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' will change in GCC 7.1
     vector<_Tp, _Alloc>::
     ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:449:5: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:64:0,
                 from scoring.h:27,
                 from sequence.h:31,
                 from murasaki.h:24,
                 from murasaki_mpi.cc:33:
/usr/include/c++/6/bits/stl_vector.h: In function 'void mpi_types_init()':
/usr/include/c++/6/bits/stl_vector.h:1055:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
  _M_fill_insert(begin() + __offset, __n, __x);
  ^~~~~~~~~~~~~~
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c arrayhash.cc
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c seqread.cc
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c scoring.cc
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c openhash.cc
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c genopts.cc
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c binseq.cc
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../murasaki murasaki.o timing.o dinkymath.o sequence.o msethash.o options.o ecohash.o ecolist.o murasaki_mpi.o arrayhash.o seqread.o scoring.o openhash.o genopts.o binseq.o   -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -Wl,-z,now  -lcryptopp -pthread
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c cgr-image.cc
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c cgr.cc
cgr.cc: In member function 'void Cgr::merge(Cgr&)':
cgr.cc:140:7: warning: variable 'redist' set but not used [-Wunused-but-set-variable]
   int redist=(unsigned long)(rez*rez)<=seedcount;
       ^~~~~~
cgr.cc: In member function 'bool Cgr::savePNG(std::__cxx11::string)':
cgr.cc:288:7: warning: variable 'res' set but not used [-Wunused-but-set-variable]
   int res;
       ^~~
cgr.cc: In member function 'int PgmBuffer::loadPGM(std::__cxx11::string)':
cgr.cc:435:7: warning: variable 'wordwidth' set but not used [-Wunused-but-set-variable]
   int wordwidth=1;
       ^~~~~~~~~
cgr.cc: In member function 'int PgmBuffer::loadBinaryPGM(std::__cxx11::string)':
cgr.cc:557:31: warning: 'height' may be used uninitialized in this function [-Wmaybe-uninitialized]
   if(data.size()<(uint)(height*width))
                        ~~~~~~~^~~~~~~
cgr.cc:557:31: warning: 'width' may be used uninitialized in this function [-Wmaybe-uninitialized]
cgr.cc: In member function 'int PgmBuffer::loadPGM(std::__cxx11::string)':
cgr.cc:485:31: warning: 'height' may be used uninitialized in this function [-Wmaybe-uninitialized]
   if(data.size()<(uint)(height*width))
                        ~~~~~~~^~~~~~~
cgr.cc:485:31: warning: 'width' may be used uninitialized in this function [-Wmaybe-uninitialized]
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../cgr-image cgr-image.o cgr.o dinkymath.o timing.o seqread.o  genopts.o   -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -Wl,-z,now  -lcryptopp -pthread
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c cgr-compare.cc
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../cgr-compare cgr-compare.o cgr.o dinkymath.o timing.o   -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -Wl,-z,now  -lcryptopp -pthread
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c cgr-random.cc
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../cgr-random cgr-random.o cgr.o dinkymath.o timing.o   -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -Wl,-z,now  -lcryptopp -pthread
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c cgr-sample.cc
cgr-sample.cc: In function 'int main(int, char**)':
cgr-sample.cc:54:8: warning: variable 'repeatmask' set but not used [-Wunused-but-set-variable]
   bool repeatmask=false,save=false;
        ^~~~~~~~~~
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../cgr-sample cgr.o cgr-sample.o seqread.o genopts.o   -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -Wl,-z,now  -lcryptopp -pthread
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c testeco.cc
testeco.cc: In function 'long int bigrand()':
testeco.cc:29:43: warning: left shift count >= width of type [-Wshift-count-overflow]
   return (long)(((unsigned long)(rand())<<32) + ((unsigned long)(rand())));
                                           ^~
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../testeco testeco.o ecolist.o dinkymath.o timing.o  -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -Wl,-z,now  -lcryptopp -pthread
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c align-compare.cc
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c alignments.cc
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../align-compare align-compare.o dinkymath.o alignments.o timing.o  -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -Wl,-z,now  -lcryptopp -pthread
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c align-or.cc
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../align-or align-or.o alignments.o dinkymath.o timing.o  -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -Wl,-z,now  -lcryptopp -pthread
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c geneparse.cc
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../geneparse geneparse.o seqread.o genopts.o  -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -Wl,-z,now  -lcryptopp -pthread
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c align-and.cc
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../align-and align-and.o alignments.o dinkymath.o timing.o  -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -Wl,-z,now  -lcryptopp -pthread
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c align-best.cc
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../align-best align-best.o alignments.o dinkymath.o timing.o  -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -Wl,-z,now  -lcryptopp -pthread
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c align-coverage.cc
align-coverage.cc: In function 'int main(int, char**)':
align-coverage.cc:148:10: warning: variable 'seqStats' set but not used [-Wunused-but-set-variable]
     bool seqStats=true;
          ^~~~~~~~
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../align-coverage align-coverage.o alignments.o dinkymath.o timing.o seqread.o genopts.o  -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -Wl,-z,now  -lcryptopp -pthread
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c getsegments.cc
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../getsegments getsegments.o seqread.o genopts.o  -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -Wl,-z,now  -lcryptopp -pthread
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c mbfa.cc
mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../mbfa mbfa.o dinkymath.o timing.o seqread.o binseq.o genopts.o  -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -Wl,-z,now  -lcryptopp -pthread
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
for bin in geneparse mbfa murasaki cgr-* testeco align-* ; do \
    mv ${bin} ${bin}-mpi ; \
done
make clean
make[2]: Entering directory '/<<PKGBUILDDIR>>'
rm -rf *.o *~ .*~ core
make -C src clean
make[3]: Entering directory '/<<PKGBUILDDIR>>/src'
rm -rf *.o *~ .*~ core ../murasaki ../cgr-image ../cgr-compare ../cgr-random ../cgr-sample ../testeco ../align-compare ../align-or ../geneparse ../align-and ../align-best ../align-coverage ../getsegments ../mbfa
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build -- USE_MPI=NO
	make -j1 USE_MPI=NO
make[2]: Entering directory '/<<PKGBUILDDIR>>'
make -C src all
make[3]: Entering directory '/<<PKGBUILDDIR>>/src'
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c murasaki.cc
murasaki.cc: In function 'void procLocs(LocList&, std::__cxx11::list<Location>&, int, int)':
murasaki.cc:1008:8: warning: variable 'revZero' set but not used [-Wunused-but-set-variable]
   bool revZero=false;
        ^~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c timing.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c dinkymath.cc
dinkymath.cc: In function 'std::__cxx11::string littleEndianStr(unsigned int, int)':
dinkymath.cc:40:7: warning: variable 'last' set but not used [-Wunused-but-set-variable]
   int last=0;
       ^~~~
dinkymath.cc: In function 'std::__cxx11::string littleEndianPat(unsigned int, int)':
dinkymath.cc:53:7: warning: variable 'last' set but not used [-Wunused-but-set-variable]
   int last=0;
       ^~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c sequence.cc
sequence.cc: In member function 'std::pair<double, long int> IntervalSet::entropy() const':
sequence.cc:3332:10: warning: variable 'shortest' set but not used [-Wunused-but-set-variable]
   SeqPos shortest=0,shortlen=length(spaces[0]);
          ^~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
                 from scoring.h:27,
                 from sequence.h:31,
                 from murasaki.h:24,
                 from sequence.cc:28:
/usr/include/c++/6/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/6/bits/vector.tcc:449:5: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' will change in GCC 7.1
     vector<_Tp, _Alloc>::
     ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:449:5: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:64:0,
                 from scoring.h:27,
                 from sequence.h:31,
                 from murasaki.h:24,
                 from sequence.cc:28:
/usr/include/c++/6/bits/stl_vector.h: In member function 'double HashMethod::fitnessCheck()':
/usr/include/c++/6/bits/stl_vector.h:1055:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
  _M_fill_insert(begin() + __offset, __n, __x);
  ^~~~~~~~~~~~~~
In file included from /usr/include/c++/6/algorithm:62:0,
                 from /usr/include/boost/regex/v4/regex_workaround.hpp:33,
                 from /usr/include/boost/regex/v4/regex.hpp:32,
                 from /usr/include/boost/regex.hpp:31,
                 from seqread.h:33,
                 from binseq.hh:31,
                 from sequence.h:32,
                 from murasaki.h:24,
                 from sequence.cc:28:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<HashMethod*, std::vector<HashMethod> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<HashMethod*, std::vector<HashMethod> >' will change in GCC 7.1
     __insertion_sort(_RandomAccessIterator __first,
     ^~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<HashMethod*, std::vector<HashMethod> >' will change in GCC 7.1
In file included from /usr/include/c++/6/bits/stl_algo.h:61:0,
                 from /usr/include/c++/6/algorithm:62,
                 from /usr/include/boost/regex/v4/regex_workaround.hpp:33,
                 from /usr/include/boost/regex/v4/regex.hpp:32,
                 from /usr/include/boost/regex.hpp:31,
                 from seqread.h:33,
                 from binseq.hh:31,
                 from sequence.h:32,
                 from murasaki.h:24,
                 from sequence.cc:28:
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<HashMethod*, std::vector<HashMethod> >; _Distance = int; _Tp = HashMethod; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_heap.h:209:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<HashMethod*, std::vector<HashMethod> >' will change in GCC 7.1
     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
     ^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<HashMethod*, std::vector<HashMethod> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_heap.h:319:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<HashMethod*, std::vector<HashMethod> >' will change in GCC 7.1
     __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
     ^~~~~~~~~~~
/usr/include/c++/6/bits/stl_heap.h:319:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<HashMethod*, std::vector<HashMethod> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<HashMethod*, std::vector<HashMethod> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_heap.h:237:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<HashMethod*, std::vector<HashMethod> >' will change in GCC 7.1
     __pop_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
     ^~~~~~~~~~
/usr/include/c++/6/bits/stl_heap.h:237:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<HashMethod*, std::vector<HashMethod> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h:237:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<HashMethod*, std::vector<HashMethod> >' will change in GCC 7.1
In file included from /usr/include/c++/6/algorithm:62:0,
                 from /usr/include/boost/regex/v4/regex_workaround.hpp:33,
                 from /usr/include/boost/regex/v4/regex.hpp:32,
                 from /usr/include/boost/regex.hpp:31,
                 from seqread.h:33,
                 from binseq.hh:31,
                 from sequence.h:32,
                 from murasaki.h:24,
                 from sequence.cc:28:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<HashMethod*, std::vector<HashMethod> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<HashMethod*, std::vector<HashMethod> >' will change in GCC 7.1
     __introsort_loop(_RandomAccessIterator __first,
     ^~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<HashMethod*, std::vector<HashMethod> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1669:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<HashMethod*, std::vector<HashMethod> >' will change in GCC 7.1
       std::__make_heap(__first, __middle, __comp);
       ^~~
In file included from /usr/include/c++/6/bits/stl_algo.h:61:0,
                 from /usr/include/c++/6/algorithm:62,
                 from /usr/include/boost/regex/v4/regex_workaround.hpp:33,
                 from /usr/include/boost/regex/v4/regex.hpp:32,
                 from /usr/include/boost/regex.hpp:31,
                 from seqread.h:33,
                 from binseq.hh:31,
                 from sequence.h:32,
                 from murasaki.h:24,
                 from sequence.cc:28:
/usr/include/c++/6/bits/stl_heap.h:400:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<HashMethod*, std::vector<HashMethod> >' will change in GCC 7.1
    std::__pop_heap(__first, __last, __last, __comp);
    ^~~
/usr/include/c++/6/bits/stl_heap.h:400:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<HashMethod*, std::vector<HashMethod> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_heap.h:400:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<HashMethod*, std::vector<HashMethod> >' will change in GCC 7.1
In file included from /usr/include/c++/6/algorithm:62:0,
                 from /usr/include/boost/regex/v4/regex_workaround.hpp:33,
                 from /usr/include/boost/regex/v4/regex.hpp:32,
                 from /usr/include/boost/regex.hpp:31,
                 from seqread.h:33,
                 from binseq.hh:31,
                 from sequence.h:32,
                 from murasaki.h:24,
                 from sequence.cc:28:
/usr/include/c++/6/bits/stl_algo.h:1951:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<HashMethod*, std::vector<HashMethod> >' will change in GCC 7.1
    std::__introsort_loop(__cut, __last, __depth_limit, __comp);
    ^~~
/usr/include/c++/6/bits/stl_algo.h:1669:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<HashMethod*, std::vector<HashMethod> >' will change in GCC 7.1
       std::__make_heap(__first, __middle, __comp);
       ^~~
/usr/include/c++/6/bits/stl_algo.h: In member function 'void BitSequence::compileHashFunc()':
/usr/include/c++/6/bits/stl_algo.h:1965:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<HashMethod*, std::vector<HashMethod> >' will change in GCC 7.1
    std::__introsort_loop(__first, __last,
    ^~~
/usr/include/c++/6/bits/stl_algo.h:1882:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<HashMethod*, std::vector<HashMethod> >' will change in GCC 7.1
    std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
    ^~~
/usr/include/c++/6/bits/stl_algo.h:1887:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<HashMethod*, std::vector<HashMethod> >' will change in GCC 7.1
  std::__insertion_sort(__first, __last, __comp);
  ^~~
/usr/include/c++/6/bits/stl_algo.h:1965:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<HashMethod*, std::vector<HashMethod> >' will change in GCC 7.1
    std::__introsort_loop(__first, __last,
    ^~~
/usr/include/c++/6/bits/stl_algo.h:1882:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<HashMethod*, std::vector<HashMethod> >' will change in GCC 7.1
    std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
    ^~~
/usr/include/c++/6/bits/stl_algo.h:1887:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<HashMethod*, std::vector<HashMethod> >' will change in GCC 7.1
  std::__insertion_sort(__first, __last, __comp);
  ^~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c msethash.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c options.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c ecohash.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c ecolist.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c murasaki_mpi.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c arrayhash.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c seqread.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c scoring.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c openhash.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c genopts.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c binseq.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../murasaki murasaki.o timing.o dinkymath.o sequence.o msethash.o options.o ecohash.o ecolist.o murasaki_mpi.o arrayhash.o seqread.o scoring.o openhash.o genopts.o binseq.o   -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -Wl,-z,now  -lcryptopp -pthread
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c cgr-image.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c cgr.cc
cgr.cc: In member function 'void Cgr::merge(Cgr&)':
cgr.cc:140:7: warning: variable 'redist' set but not used [-Wunused-but-set-variable]
   int redist=(unsigned long)(rez*rez)<=seedcount;
       ^~~~~~
cgr.cc: In member function 'bool Cgr::savePNG(std::__cxx11::string)':
cgr.cc:288:7: warning: variable 'res' set but not used [-Wunused-but-set-variable]
   int res;
       ^~~
cgr.cc: In member function 'int PgmBuffer::loadPGM(std::__cxx11::string)':
cgr.cc:435:7: warning: variable 'wordwidth' set but not used [-Wunused-but-set-variable]
   int wordwidth=1;
       ^~~~~~~~~
cgr.cc: In member function 'int PgmBuffer::loadBinaryPGM(std::__cxx11::string)':
cgr.cc:557:31: warning: 'height' may be used uninitialized in this function [-Wmaybe-uninitialized]
   if(data.size()<(uint)(height*width))
                        ~~~~~~~^~~~~~~
cgr.cc:557:31: warning: 'width' may be used uninitialized in this function [-Wmaybe-uninitialized]
cgr.cc: In member function 'int PgmBuffer::loadPGM(std::__cxx11::string)':
cgr.cc:485:31: warning: 'height' may be used uninitialized in this function [-Wmaybe-uninitialized]
   if(data.size()<(uint)(height*width))
                        ~~~~~~~^~~~~~~
cgr.cc:485:31: warning: 'width' may be used uninitialized in this function [-Wmaybe-uninitialized]
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../cgr-image cgr-image.o cgr.o dinkymath.o timing.o seqread.o  genopts.o   -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -Wl,-z,now  -lcryptopp -pthread
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c cgr-compare.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../cgr-compare cgr-compare.o cgr.o dinkymath.o timing.o   -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -Wl,-z,now  -lcryptopp -pthread
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c cgr-random.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../cgr-random cgr-random.o cgr.o dinkymath.o timing.o   -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -Wl,-z,now  -lcryptopp -pthread
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c cgr-sample.cc
cgr-sample.cc: In function 'int main(int, char**)':
cgr-sample.cc:54:8: warning: variable 'repeatmask' set but not used [-Wunused-but-set-variable]
   bool repeatmask=false,save=false;
        ^~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../cgr-sample cgr.o cgr-sample.o seqread.o genopts.o   -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -Wl,-z,now  -lcryptopp -pthread
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c testeco.cc
testeco.cc: In function 'long int bigrand()':
testeco.cc:29:43: warning: left shift count >= width of type [-Wshift-count-overflow]
   return (long)(((unsigned long)(rand())<<32) + ((unsigned long)(rand())));
                                           ^~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../testeco testeco.o ecolist.o dinkymath.o timing.o  -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -Wl,-z,now  -lcryptopp -pthread
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c align-compare.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c alignments.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../align-compare align-compare.o dinkymath.o alignments.o timing.o  -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -Wl,-z,now  -lcryptopp -pthread
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c align-or.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../align-or align-or.o alignments.o dinkymath.o timing.o  -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -Wl,-z,now  -lcryptopp -pthread
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c geneparse.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../geneparse geneparse.o seqread.o genopts.o  -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -Wl,-z,now  -lcryptopp -pthread
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c align-and.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../align-and align-and.o alignments.o dinkymath.o timing.o  -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -Wl,-z,now  -lcryptopp -pthread
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c align-best.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../align-best align-best.o alignments.o dinkymath.o timing.o  -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -Wl,-z,now  -lcryptopp -pthread
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c align-coverage.cc
align-coverage.cc: In function 'int main(int, char**)':
align-coverage.cc:148:10: warning: variable 'seqStats' set but not used [-Wunused-but-set-variable]
     bool seqStats=true;
          ^~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../align-coverage align-coverage.o alignments.o dinkymath.o timing.o seqread.o genopts.o  -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -Wl,-z,now  -lcryptopp -pthread
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c getsegments.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../getsegments getsegments.o seqread.o genopts.o  -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -Wl,-z,now  -lcryptopp -pthread
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c mbfa.cc
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall  -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../mbfa mbfa.o dinkymath.o timing.o seqread.o binseq.o genopts.o  -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -Wl,-z,now  -lcryptopp -pthread
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_auto_test -a
   create-stamp debian/debhelper-build-stamp
 fakeroot debian/rules binary-arch
dh binary-arch
   create-stamp debian/debhelper-build-stamp
   dh_testroot -a
   dh_prep -a
   dh_auto_install -a
   debian/rules override_dh_install-arch
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install -a
# using wildcards in install files is practical but it duplicates some files
find debian/murasaki/usr -name "*-mpi" -delete
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_installdocs -a
   dh_installchangelogs -a
   dh_installman -a
   dh_perl -a
   debian/rules override_dh_link
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_link
mkdir -p debian/murasaki-mpi/usr/share/man/man1
for man in debian/murasaki/usr/share/man/man1/* ; do \
    ln -s `basename ${man}`.gz debian/murasaki-mpi/usr/share/man/man1/`basename ${man} .1`-mpi.1.gz ; \
done
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_strip_nondeterminism -a
   dh_compress -a
   dh_fixperms -a
   dh_strip -a
   dh_makeshlibs -a
   dh_shlibdeps -a
dpkg-shlibdeps: warning: debian/murasaki/usr/lib/murasaki/cgr-sample contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/murasaki/usr/lib/murasaki/align-or contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/murasaki/usr/lib/murasaki/cgr-compare contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/murasaki/usr/lib/murasaki/cgr-image contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/murasaki/usr/lib/murasaki/align-coverage contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/murasaki/usr/lib/murasaki/align-and contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/murasaki/usr/bin/murasaki contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/murasaki/usr/lib/murasaki/cgr-random contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/murasaki/usr/bin/geneparse contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/murasaki/usr/lib/murasaki/testeco contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/murasaki/usr/lib/murasaki/align-best contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/murasaki/usr/bin/mbfa contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/murasaki/usr/lib/murasaki/align-compare contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/murasaki-mpi/usr/bin/geneparse-mpi contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/murasaki-mpi/usr/lib/murasaki/align-best-mpi contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/murasaki-mpi/usr/lib/murasaki/cgr-image-mpi contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/murasaki-mpi/usr/lib/murasaki/cgr-compare-mpi contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/murasaki-mpi/usr/lib/murasaki/align-or-mpi contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/murasaki-mpi/usr/lib/murasaki/align-coverage-mpi contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/murasaki-mpi/usr/lib/murasaki/cgr-random-mpi contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/murasaki-mpi/usr/bin/murasaki-mpi contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/murasaki-mpi/usr/lib/murasaki/align-compare-mpi contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/murasaki-mpi/usr/lib/murasaki/testeco-mpi contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/murasaki-mpi/usr/lib/murasaki/cgr-sample-mpi contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/murasaki-mpi/usr/lib/murasaki/align-and-mpi contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/murasaki-mpi/usr/bin/mbfa-mpi contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/murasaki-mpi/usr/bin/geneparse-mpi debian/murasaki-mpi/usr/lib/murasaki/align-best-mpi debian/murasaki-mpi/usr/lib/murasaki/cgr-image-mpi debian/murasaki-mpi/usr/lib/murasaki/cgr-compare-mpi debian/murasaki-mpi/usr/lib/murasaki/align-or-mpi debian/murasaki-mpi/usr/lib/murasaki/align-coverage-mpi debian/murasaki-mpi/usr/lib/murasaki/cgr-random-mpi debian/murasaki-mpi/usr/bin/murasaki-mpi debian/murasaki-mpi/usr/lib/murasaki/align-compare-mpi debian/murasaki-mpi/usr/lib/murasaki/testeco-mpi debian/murasaki-mpi/usr/lib/murasaki/cgr-sample-mpi debian/murasaki-mpi/usr/lib/murasaki/align-and-mpi debian/murasaki-mpi/usr/bin/mbfa-mpi were not linked against libmpi_cxx.so.20 (they use none of the library's symbols)
   dh_installdeb -a
   dh_gencontrol -a
dpkg-gencontrol: warning: package murasaki-mpi: unused substitution variable ${perl:Depends}
dpkg-gencontrol: warning: package murasaki-mpi: unused substitution variable ${perl:Depends}
   dh_md5sums -a
   dh_builddeb -a
dpkg-deb: building package 'murasaki-mpi-dbgsym' in '../murasaki-mpi-dbgsym_1.68.6-6+b4_armhf.deb'.
dpkg-deb: building package 'murasaki-dbgsym' in '../murasaki-dbgsym_1.68.6-6+b4_armhf.deb'.
dpkg-deb: building package 'murasaki' in '../murasaki_1.68.6-6+b4_armhf.deb'.
dpkg-deb: building package 'murasaki-mpi' in '../murasaki-mpi_1.68.6-6+b4_armhf.deb'.
 dpkg-genbuildinfo --build=any
 dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../murasaki_1.68.6-6+b4_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build murasaki-1.68.6
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2022-03-29T17:31:27Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Post Build Chroot                                                            |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


murasaki_1.68.6-6+b4_armhf.changes:
-----------------------------------

Format: 1.8
Date: Thu, 30 Jun 2016 09:15:01 +0000
Source: murasaki (1.68.6-6)
Binary: murasaki murasaki-mpi murasaki-common
Binary-Only: yes
Architecture: armhf
Version: 1.68.6-6+b4
Distribution: stretch-staging
Urgency: low
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Raspbian wandboard test autobuilder <root@raspbian.org>
Description:
 murasaki   - homology detection tool across multiple large genomes
 murasaki-common - homology detection tool across multiple large genomes (common fil
 murasaki-mpi - homology detection tool across multiple large genomes (MPI-versio
Changes:
 murasaki (1.68.6-6+b4) stretch-staging; urgency=low, binary-only=yes
 .
   * Binary-only non-maintainer upload for armhf; no source changes.
   * rebuild due to debcheck failure
Checksums-Sha1:
 140318d2e21a9c8cc4d270937b08e6ca20b87f5c 11125142 murasaki-dbgsym_1.68.6-6+b4_armhf.deb
 11e8ed1bd65ce141fa9c49efbab8a2b75c6f1306 11966926 murasaki-mpi-dbgsym_1.68.6-6+b4_armhf.deb
 901a47cdcb01c399b0a3a9007d42bd5f8ba114e5 381026 murasaki-mpi_1.68.6-6+b4_armhf.deb
 d608659dfbe30ce5976f1a8ac430c70b42b12671 6983 murasaki_1.68.6-6+b4_armhf.buildinfo
 fc91fa423278877f6b213f795f97e36b5b65bfa8 363754 murasaki_1.68.6-6+b4_armhf.deb
Checksums-Sha256:
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 852cfcfb7b84474821adaa7bec1fde5fd91a7e07ca19d88af19c54dc781e2898 11966926 murasaki-mpi-dbgsym_1.68.6-6+b4_armhf.deb
 3253ae7013683df4ce2b5b2a71d22694225580d2022798ea29c3d786c84cbe91 381026 murasaki-mpi_1.68.6-6+b4_armhf.deb
 e2c6616c56b0165ae4ec8e86f591e216a43bbfedfded5d6e3c684579bee46115 6983 murasaki_1.68.6-6+b4_armhf.buildinfo
 71fff635e0fdaae022c8d7352bbe1df18b59c94f3f927fc1961d4ff13299a116 363754 murasaki_1.68.6-6+b4_armhf.deb
Files:
 44f31969615bd59d3f1a643aa4795539 11125142 debug extra murasaki-dbgsym_1.68.6-6+b4_armhf.deb
 8e6768d638f1598ab31e49e8345b989f 11966926 debug extra murasaki-mpi-dbgsym_1.68.6-6+b4_armhf.deb
 5b38367c41bdc6690187e18dac10a419 381026 science optional murasaki-mpi_1.68.6-6+b4_armhf.deb
 85084736de71a2b5833720a12915deea 6983 science optional murasaki_1.68.6-6+b4_armhf.buildinfo
 12c6e7390f97167be165b1755a84115b 363754 science optional murasaki_1.68.6-6+b4_armhf.deb

+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


murasaki-dbgsym_1.68.6-6+b4_armhf.deb
-------------------------------------

 new debian package, version 2.0.
 size 11125142 bytes: control archive=1153 bytes.
     935 bytes,    13 lines      control              
    1378 bytes,    13 lines      md5sums              
 Package: murasaki-dbgsym
 Source: murasaki (1.68.6-6)
 Version: 1.68.6-6+b4
 Auto-Built-Package: debug-symbols
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 11970
 Depends: murasaki (= 1.68.6-6+b4)
 Section: debug
 Priority: extra
 Homepage: http://murasaki.dna.bio.keio.ac.jp/wiki/
 Description: Debug symbols for murasaki
 Build-Ids: 08db7fa4b85ccac7685b434d91a9b86fe1c9de7a 102088d7e56ceb34b8832f135b0ccc1ade1476ee 131ea90fdd5c19c6dc695a71d517b9c1c483c53a 4df5627c34f9b74b9d4e0fe80f17bbc9bb8526e5 54c4e6b41a32b27197b8319a3a9e578449be09aa 55190f778364f8e7dc90f01cd179194d47aa797e 57de236fc2e76c173315630b35750959dc2df8f2 7f2726d497f3c56994afa339645055fa8fcb773c 9db69455ecc01a6e9bc939eeecc55381632b844e a86886452cc4797ecf26ef2ecaf20b5d552f72d3 c93ef8074ed95142daa00240f22b499e12a004d3 d06c5989e65a661d5be355f401e4d43d5de7de7b f0cc1abed408409ca6bfd96c6bf3f6669c3138f6

drwxr-xr-x root/root         0 2016-06-30 09:15 ./
drwxr-xr-x root/root         0 2016-06-30 09:15 ./usr/
drwxr-xr-x root/root         0 2016-06-30 09:15 ./usr/lib/
drwxr-xr-x root/root         0 2016-06-30 09:15 ./usr/lib/debug/
drwxr-xr-x root/root         0 2016-06-30 09:15 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2016-06-30 09:15 ./usr/lib/debug/.build-id/08/
-rw-r--r-- root/root    477524 2016-06-30 09:15 ./usr/lib/debug/.build-id/08/db7fa4b85ccac7685b434d91a9b86fe1c9de7a.debug
drwxr-xr-x root/root         0 2016-06-30 09:15 ./usr/lib/debug/.build-id/10/
-rw-r--r-- root/root    863856 2016-06-30 09:15 ./usr/lib/debug/.build-id/10/2088d7e56ceb34b8832f135b0ccc1ade1476ee.debug
drwxr-xr-x root/root         0 2016-06-30 09:15 ./usr/lib/debug/.build-id/13/
-rw-r--r-- root/root    423688 2016-06-30 09:15 ./usr/lib/debug/.build-id/13/1ea90fdd5c19c6dc695a71d517b9c1c483c53a.debug
drwxr-xr-x root/root         0 2016-06-30 09:15 ./usr/lib/debug/.build-id/4d/
-rw-r--r-- root/root    677708 2016-06-30 09:15 ./usr/lib/debug/.build-id/4d/f5627c34f9b74b9d4e0fe80f17bbc9bb8526e5.debug
drwxr-xr-x root/root         0 2016-06-30 09:15 ./usr/lib/debug/.build-id/54/
-rw-r--r-- root/root    994692 2016-06-30 09:15 ./usr/lib/debug/.build-id/54/c4e6b41a32b27197b8319a3a9e578449be09aa.debug
drwxr-xr-x root/root         0 2016-06-30 09:15 ./usr/lib/debug/.build-id/55/
-rw-r--r-- root/root    759988 2016-06-30 09:15 ./usr/lib/debug/.build-id/55/190f778364f8e7dc90f01cd179194d47aa797e.debug
drwxr-xr-x root/root         0 2016-06-30 09:15 ./usr/lib/debug/.build-id/57/
-rw-r--r-- root/root    939720 2016-06-30 09:15 ./usr/lib/debug/.build-id/57/de236fc2e76c173315630b35750959dc2df8f2.debug
drwxr-xr-x root/root         0 2016-06-30 09:15 ./usr/lib/debug/.build-id/7f/
-rw-r--r-- root/root   1262944 2016-06-30 09:15 ./usr/lib/debug/.build-id/7f/2726d497f3c56994afa339645055fa8fcb773c.debug
drwxr-xr-x root/root         0 2016-06-30 09:15 ./usr/lib/debug/.build-id/9d/
-rw-r--r-- root/root    460680 2016-06-30 09:15 ./usr/lib/debug/.build-id/9d/b69455ecc01a6e9bc939eeecc55381632b844e.debug
drwxr-xr-x root/root         0 2016-06-30 09:15 ./usr/lib/debug/.build-id/a8/
-rw-r--r-- root/root   2824360 2016-06-30 09:15 ./usr/lib/debug/.build-id/a8/6886452cc4797ecf26ef2ecaf20b5d552f72d3.debug
drwxr-xr-x root/root         0 2016-06-30 09:15 ./usr/lib/debug/.build-id/c9/
-rw-r--r-- root/root    804948 2016-06-30 09:15 ./usr/lib/debug/.build-id/c9/3ef8074ed95142daa00240f22b499e12a004d3.debug
drwxr-xr-x root/root         0 2016-06-30 09:15 ./usr/lib/debug/.build-id/d0/
-rw-r--r-- root/root    771084 2016-06-30 09:15 ./usr/lib/debug/.build-id/d0/6c5989e65a661d5be355f401e4d43d5de7de7b.debug
drwxr-xr-x root/root         0 2016-06-30 09:15 ./usr/lib/debug/.build-id/f0/
-rw-r--r-- root/root    965964 2016-06-30 09:15 ./usr/lib/debug/.build-id/f0/cc1abed408409ca6bfd96c6bf3f6669c3138f6.debug
drwxr-xr-x root/root         0 2016-06-30 09:15 ./usr/share/
drwxr-xr-x root/root         0 2016-06-30 09:15 ./usr/share/doc/
lrwxrwxrwx root/root         0 2016-06-30 09:15 ./usr/share/doc/murasaki-dbgsym -> murasaki


murasaki-mpi-dbgsym_1.68.6-6+b4_armhf.deb
-----------------------------------------

 new debian package, version 2.0.
 size 11966926 bytes: control archive=1157 bytes.
     947 bytes,    13 lines      control              
    1378 bytes,    13 lines      md5sums              
 Package: murasaki-mpi-dbgsym
 Source: murasaki (1.68.6-6)
 Version: 1.68.6-6+b4
 Auto-Built-Package: debug-symbols
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 12788
 Depends: murasaki-mpi (= 1.68.6-6+b4)
 Section: debug
 Priority: extra
 Homepage: http://murasaki.dna.bio.keio.ac.jp/wiki/
 Description: Debug symbols for murasaki-mpi
 Build-Ids: 10775f63fd3fd64094520951095fb7d1abf42c54 1f5268ab13db57aeaf2c7f2d3ebbfe0a4682d86a 27f42ab6a3c09706fa027de374764c9bcc9f7bf1 2de3fdbff252b813d3948a5e6ec295ff71259f73 452f1098ecc5379698769c6422c4ea0ab6711a90 531a019f62219e0f3abe462bcfc42c05d38283f5 591bd0c37b0cb10ec8d77b55cac6f8ef5143f9e6 5ea2f3bb1ba05a96e61c968e0fc1e0964629c094 708ad59750db0a10c0b0d03c9167b868930f8949 79dcf33e917df53680ce499caf276e1eef973d83 9799d92f09466d3d7b2643db032577b3b37b5f42 b94a3a8316e1c7973d71919e5344c304bb0896b2 d58034186770c96efa2983d7e223884dbdd0457f

drwxr-xr-x root/root         0 2016-06-30 09:15 ./
drwxr-xr-x root/root         0 2016-06-30 09:15 ./usr/
drwxr-xr-x root/root         0 2016-06-30 09:15 ./usr/lib/
drwxr-xr-x root/root         0 2016-06-30 09:15 ./usr/lib/debug/
drwxr-xr-x root/root         0 2016-06-30 09:15 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2016-06-30 09:15 ./usr/lib/debug/.build-id/10/
-rw-r--r-- root/root    986284 2016-06-30 09:15 ./usr/lib/debug/.build-id/10/775f63fd3fd64094520951095fb7d1abf42c54.debug
drwxr-xr-x root/root         0 2016-06-30 09:15 ./usr/lib/debug/.build-id/1f/
-rw-r--r-- root/root    791276 2016-06-30 09:15 ./usr/lib/debug/.build-id/1f/5268ab13db57aeaf2c7f2d3ebbfe0a4682d86a.debug
drwxr-xr-x root/root         0 2016-06-30 09:15 ./usr/lib/debug/.build-id/27/
-rw-r--r-- root/root   1282728 2016-06-30 09:15 ./usr/lib/debug/.build-id/27/f42ab6a3c09706fa027de374764c9bcc9f7bf1.debug
drwxr-xr-x root/root         0 2016-06-30 09:15 ./usr/lib/debug/.build-id/2d/
-rw-r--r-- root/root    677700 2016-06-30 09:15 ./usr/lib/debug/.build-id/2d/e3fdbff252b813d3948a5e6ec295ff71259f73.debug
drwxr-xr-x root/root         0 2016-06-30 09:15 ./usr/lib/debug/.build-id/45/
-rw-r--r-- root/root    780216 2016-06-30 09:15 ./usr/lib/debug/.build-id/45/2f1098ecc5379698769c6422c4ea0ab6711a90.debug
drwxr-xr-x root/root         0 2016-06-30 09:15 ./usr/lib/debug/.build-id/53/
-rw-r--r-- root/root    863840 2016-06-30 09:15 ./usr/lib/debug/.build-id/53/1a019f62219e0f3abe462bcfc42c05d38283f5.debug
drwxr-xr-x root/root         0 2016-06-30 09:15 ./usr/lib/debug/.build-id/59/
-rw-r--r-- root/root    467244 2016-06-30 09:15 ./usr/lib/debug/.build-id/59/1bd0c37b0cb10ec8d77b55cac6f8ef5143f9e6.debug
drwxr-xr-x root/root         0 2016-06-30 09:15 ./usr/lib/debug/.build-id/5e/
-rw-r--r-- root/root   3436976 2016-06-30 09:15 ./usr/lib/debug/.build-id/5e/a2f3bb1ba05a96e61c968e0fc1e0964629c094.debug
drwxr-xr-x root/root         0 2016-06-30 09:15 ./usr/lib/debug/.build-id/70/
-rw-r--r-- root/root   1015964 2016-06-30 09:15 ./usr/lib/debug/.build-id/70/8ad59750db0a10c0b0d03c9167b868930f8949.debug
drwxr-xr-x root/root         0 2016-06-30 09:15 ./usr/lib/debug/.build-id/79/
-rw-r--r-- root/root    825116 2016-06-30 09:15 ./usr/lib/debug/.build-id/79/dcf33e917df53680ce499caf276e1eef973d83.debug
drwxr-xr-x root/root         0 2016-06-30 09:15 ./usr/lib/debug/.build-id/97/
-rw-r--r-- root/root    959456 2016-06-30 09:15 ./usr/lib/debug/.build-id/97/99d92f09466d3d7b2643db032577b3b37b5f42.debug
drwxr-xr-x root/root         0 2016-06-30 09:15 ./usr/lib/debug/.build-id/b9/
-rw-r--r-- root/root    498320 2016-06-30 09:15 ./usr/lib/debug/.build-id/b9/4a3a8316e1c7973d71919e5344c304bb0896b2.debug
drwxr-xr-x root/root         0 2016-06-30 09:15 ./usr/lib/debug/.build-id/d5/
-rw-r--r-- root/root    481544 2016-06-30 09:15 ./usr/lib/debug/.build-id/d5/8034186770c96efa2983d7e223884dbdd0457f.debug
drwxr-xr-x root/root         0 2016-06-30 09:15 ./usr/share/
drwxr-xr-x root/root         0 2016-06-30 09:15 ./usr/share/doc/
lrwxrwxrwx root/root         0 2016-06-30 09:15 ./usr/share/doc/murasaki-mpi-dbgsym -> murasaki-mpi


murasaki-mpi_1.68.6-6+b4_armhf.deb
----------------------------------

 new debian package, version 2.0.
 size 381026 bytes: control archive=1497 bytes.
    1390 bytes,    28 lines      control              
    1203 bytes,    18 lines      md5sums              
 Package: murasaki-mpi
 Source: murasaki (1.68.6-6)
 Version: 1.68.6-6+b4
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 2466
 Depends: murasaki-common, libboost-filesystem1.62.0, libboost-iostreams1.62.0, libboost-regex1.62.0, libboost-system1.62.0, libc6 (>= 2.4), libcrypto++6, libgcc1 (>= 1:3.5), libopenmpi2, libstdc++6 (>= 5.2)
 Section: science
 Priority: optional
 Homepage: http://murasaki.dna.bio.keio.ac.jp/wiki/
 Description: homology detection tool across multiple large genomes (MPI-version)
  Murasaki is a scalable and fast, language theory-based homology
  detection tool across multiple large genomes. It enable whole-genome
  scale multiple genome global alignments. Supports unlimited length
  gapped-seed patterns and unique TF-IDF based filtering.
  .
  Murasaki is an anchor alignment software, which is
   * exteremely fast (17 CPU hours for whole Human x Mouse genome (with
     40 nodes: 52 wall minutes))
   * scalable (Arbitrarily parallelizable across multiple nodes using MPI.
     Even a single node with 16GB of ram can handle over 1Gbp of sequence.)
   * unlimited pattern length
   * repeat tolerant
   * intelligent noise reduction
  .
  This package provides the MPI-enabled binary for murasaki.  While this
  will speed up operation on multi-processor machines it will slow down
  on a single processor.

drwxr-xr-x root/root         0 2016-06-30 09:15 ./
drwxr-xr-x root/root         0 2016-06-30 09:15 ./usr/
drwxr-xr-x root/root         0 2016-06-30 09:15 ./usr/bin/
-rwxr-xr-x root/root    186100 2016-06-30 09:15 ./usr/bin/geneparse-mpi
-rwxr-xr-x root/root    222900 2016-06-30 09:15 ./usr/bin/mbfa-mpi
-rwxr-xr-x root/root    576324 2016-06-30 09:15 ./usr/bin/murasaki-mpi
drwxr-xr-x root/root         0 2016-06-30 09:15 ./usr/lib/
drwxr-xr-x root/root         0 2016-06-30 09:15 ./usr/lib/murasaki/
-rwxr-xr-x root/root    145044 2016-06-30 09:15 ./usr/lib/murasaki/align-and-mpi
-rwxr-xr-x root/root    153252 2016-06-30 09:15 ./usr/lib/murasaki/align-best-mpi
-rwxr-xr-x root/root    169660 2016-06-30 09:15 ./usr/lib/murasaki/align-compare-mpi
-rwxr-xr-x root/root    231092 2016-06-30 09:15 ./usr/lib/murasaki/align-coverage-mpi
-rwxr-xr-x root/root    145028 2016-06-30 09:15 ./usr/lib/murasaki/align-or-mpi
-rwxr-xr-x root/root     75384 2016-06-30 09:15 ./usr/lib/murasaki/cgr-compare-mpi
-rwxr-xr-x root/root    231152 2016-06-30 09:15 ./usr/lib/murasaki/cgr-image-mpi
-rwxr-xr-x root/root      7138 2010-08-24 14:18 ./usr/lib/murasaki/cgr-image.pl-mpi
-rwxr-xr-x root/root     79500 2016-06-30 09:15 ./usr/lib/murasaki/cgr-random-mpi
-rwxr-xr-x root/root    227032 2016-06-30 09:15 ./usr/lib/murasaki/cgr-sample-mpi
-rwxr-xr-x root/root     50744 2016-06-30 09:15 ./usr/lib/murasaki/testeco-mpi
drwxr-xr-x root/root         0 2016-06-30 09:15 ./usr/share/
drwxr-xr-x root/root         0 2016-06-30 09:15 ./usr/share/doc/
drwxr-xr-x root/root         0 2016-06-30 09:15 ./usr/share/doc/murasaki-mpi/
-rw-r--r-- root/root       249 2016-06-30 09:15 ./usr/share/doc/murasaki-mpi/README.test
-rw-r--r-- root/root       223 2016-06-30 09:15 ./usr/share/doc/murasaki-mpi/changelog.Debian.armhf.gz
-rw-r--r-- root/root       708 2016-06-30 09:15 ./usr/share/doc/murasaki-mpi/changelog.Debian.gz
-rw-r--r-- root/root      2221 2016-06-30 09:15 ./usr/share/doc/murasaki-mpi/copyright
drwxr-xr-x root/root         0 2016-06-30 09:15 ./usr/share/man/
drwxr-xr-x root/root         0 2016-06-30 09:15 ./usr/share/man/man1/
lrwxrwxrwx root/root         0 2016-06-30 09:15 ./usr/share/man/man1/geneparse-mpi.1.gz -> geneparse.1.gz
lrwxrwxrwx root/root         0 2016-06-30 09:15 ./usr/share/man/man1/mbfa-mpi.1.gz -> mbfa.1.gz
lrwxrwxrwx root/root         0 2016-06-30 09:15 ./usr/share/man/man1/murasaki-mpi.1.gz -> murasaki.1.gz


murasaki_1.68.6-6+b4_armhf.deb
------------------------------

 new debian package, version 2.0.
 size 363754 bytes: control archive=1437 bytes.
    1189 bytes,    24 lines      control              
    1265 bytes,    20 lines      md5sums              
 Package: murasaki
 Source: murasaki (1.68.6-6)
 Version: 1.68.6-6+b4
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 2393
 Depends: murasaki-common, libboost-filesystem1.62.0, libboost-iostreams1.62.0, libboost-regex1.62.0, libboost-system1.62.0, libc6 (>= 2.4), libcrypto++6, libgcc1 (>= 1:3.5), libstdc++6 (>= 5.2)
 Section: science
 Priority: optional
 Homepage: http://murasaki.dna.bio.keio.ac.jp/wiki/
 Description: homology detection tool across multiple large genomes
  Murasaki is a scalable and fast, language theory-based homology
  detection tool across multiple large genomes. It enable whole-genome
  scale multiple genome global alignments. Supports unlimited length
  gapped-seed patterns and unique TF-IDF based filtering.
  .
  Murasaki is an anchor alignment software, which is
   * exteremely fast (17 CPU hours for whole Human x Mouse genome (with
     40 nodes: 52 wall minutes))
   * scalable (Arbitrarily parallelizable across multiple nodes using MPI.
     Even a single node with 16GB of ram can handle over 1Gbp of sequence.)
   * unlimited pattern length
   * repeat tolerant
   * intelligent noise reduction

drwxr-xr-x root/root         0 2016-06-30 09:15 ./
drwxr-xr-x root/root         0 2016-06-30 09:15 ./usr/
drwxr-xr-x root/root         0 2016-06-30 09:15 ./usr/bin/
-rwxr-xr-x root/root    186100 2016-06-30 09:15 ./usr/bin/geneparse
-rwxr-xr-x root/root    222900 2016-06-30 09:15 ./usr/bin/mbfa
-rwxr-xr-x root/root    494388 2016-06-30 09:15 ./usr/bin/murasaki
drwxr-xr-x root/root         0 2016-06-30 09:15 ./usr/lib/
drwxr-xr-x root/root         0 2016-06-30 09:15 ./usr/lib/murasaki/
-rwxr-xr-x root/root    145044 2016-06-30 09:15 ./usr/lib/murasaki/align-and
-rwxr-xr-x root/root    153252 2016-06-30 09:15 ./usr/lib/murasaki/align-best
-rwxr-xr-x root/root    169660 2016-06-30 09:15 ./usr/lib/murasaki/align-compare
-rwxr-xr-x root/root    231092 2016-06-30 09:15 ./usr/lib/murasaki/align-coverage
-rwxr-xr-x root/root    145028 2016-06-30 09:15 ./usr/lib/murasaki/align-or
-rwxr-xr-x root/root     75384 2016-06-30 09:15 ./usr/lib/murasaki/cgr-compare
-rwxr-xr-x root/root    231152 2016-06-30 09:15 ./usr/lib/murasaki/cgr-image
-rwxr-xr-x root/root     79500 2016-06-30 09:15 ./usr/lib/murasaki/cgr-random
-rwxr-xr-x root/root    227032 2016-06-30 09:15 ./usr/lib/murasaki/cgr-sample
-rwxr-xr-x root/root     50744 2016-06-30 09:15 ./usr/lib/murasaki/testeco
drwxr-xr-x root/root         0 2016-06-30 09:15 ./usr/share/
drwxr-xr-x root/root         0 2016-06-30 09:15 ./usr/share/doc/
drwxr-xr-x root/root         0 2016-06-30 09:15 ./usr/share/doc/murasaki/
-rw-r--r-- root/root       249 2016-06-30 09:15 ./usr/share/doc/murasaki/README.test
-rw-r--r-- root/root       223 2016-06-30 09:15 ./usr/share/doc/murasaki/changelog.Debian.armhf.gz
-rw-r--r-- root/root       708 2016-06-30 09:15 ./usr/share/doc/murasaki/changelog.Debian.gz
-rw-r--r-- root/root      2221 2016-06-30 09:15 ./usr/share/doc/murasaki/copyright
drwxr-xr-x root/root         0 2016-06-30 09:15 ./usr/share/man/
drwxr-xr-x root/root         0 2016-06-30 09:15 ./usr/share/man/man1/
-rw-r--r-- root/root      2518 2016-06-30 09:15 ./usr/share/man/man1/geneparse.1.gz
-rw-r--r-- root/root      2721 2016-06-30 09:15 ./usr/share/man/man1/mbfa.1.gz
-rw-r--r-- root/root     10888 2016-06-30 09:15 ./usr/share/man/man1/murasaki.1.gz


+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: armhf
Build-Space: 163920
Build-Time: 2415
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 496
Job: murasaki_1.68.6-6
Machine Architecture: armhf
Package: murasaki
Package-Time: 2960
Source-Version: 1.68.6-6
Space: 163920
Status: successful
Version: 1.68.6-6+b4
--------------------------------------------------------------------------------
Finished at 2022-03-29T17:31:27Z
Build needed 00:49:20, 163920k disc space