mrbayes →
3.2.6+dfsg-2+b7 →
armhf → 2023-12-26 04:20:52
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02
+==============================================================================+
| mrbayes 3.2.6+dfsg-2+b7 (armhf) Tue, 26 Dec 2023 04:10:31 +0000 |
+==============================================================================+
Package: mrbayes
Version: 3.2.6+dfsg-2+b7
Source Version: 3.2.6+dfsg-2
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-e9c5196d-b9ea-4a48-8113-1133bdafc9a8' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private buster-staging/main Sources [11.4 MB]
Get:3 http://172.17.4.1/private buster-staging/main armhf Packages [13.0 MB]
Fetched 24.4 MB in 9s (2826 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'mrbayes' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/mrbayes.git
Please use:
git clone https://anonscm.debian.org/git/debian-med/mrbayes.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 2653 kB of source archives.
Get:1 http://172.17.4.1/private buster-staging/main mrbayes 3.2.6+dfsg-2 (dsc) [2381 B]
Get:2 http://172.17.4.1/private buster-staging/main mrbayes 3.2.6+dfsg-2 (tar) [2644 kB]
Get:3 http://172.17.4.1/private buster-staging/main mrbayes 3.2.6+dfsg-2 (diff) [6716 B]
Fetched 2653 kB in 0s (8503 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/mrbayes-rjGuhy/mrbayes-3.2.6+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/mrbayes-rjGuhy' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-LC6R3g/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-LC6R3g/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-LC6R3g/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-LC6R3g/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-LC6R3g/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-LC6R3g/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-LC6R3g/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-LC6R3g/apt_archive ./ Packages [433 B]
Fetched 2109 B in 0s (10.7 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates dbus dbus-user-session e2fsprogs-l10n libexpat1
libgpg-error-l10n libnss-systemd libpam-systemd openssl
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 52 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-LC6R3g/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 15896 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 9), libreadline-dev, mpi-default-dev, libhmsbeagle-dev (<< 2.1-1) | libhmsbeagle-dev (>= 2.1-2), autoconf, automake
Filtered Build-Depends: debhelper (>= 9), libreadline-dev, mpi-default-dev, libhmsbeagle-dev (<< 2.1-1) | libhmsbeagle-dev (>= 2.1-2), autoconf, automake
dpkg-deb: building package 'sbuild-build-depends-mrbayes-dummy' in '/<<BUILDDIR>>/resolver-LC6R3g/apt_archive/sbuild-build-depends-mrbayes-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-mrbayes-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-LC6R3g/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-LC6R3g/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-LC6R3g/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-LC6R3g/apt_archive ./ Sources [546 B]
Get:5 copy:/<<BUILDDIR>>/resolver-LC6R3g/apt_archive ./ Packages [627 B]
Fetched 2506 B in 0s (12.7 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install mrbayes build dependencies (apt-based resolver)
-------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates dbus dbus-user-session e2fsprogs-l10n libgpg-error-l10n
libnss-systemd libpam-systemd openssl
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base ibverbs-providers intltool-debian libarchive-zip-perl libbsd0
libclang-common-7-dev libclc-amdgcn libclc-dev libclc-r600 libcroco3
libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 libedit2 libelf1
libevent-2.1-6 libevent-core-2.1-6 libevent-pthreads-2.1-6
libfile-stripnondeterminism-perl libgfortran5 libglib2.0-0 libgssapi-krb5-2
libhmsbeagle-dev libhmsbeagle1v5 libhwloc-dev libhwloc-plugins libhwloc5
libibverbs-dev libibverbs1 libicu63 libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 libllvm7 libltdl-dev libltdl7 libmagic-mgc libmagic1
libncurses-dev libncurses6 libncursesw6 libnl-3-200 libnl-3-dev
libnl-route-3-200 libnl-route-3-dev libopenmpi-dev libopenmpi3 libpciaccess0
libpipeline1 libpmix2 libreadline-dev libsigsegv2 libtinfo6 libtool
libuchardet0 libxml2 m4 man-db mesa-opencl-icd mpi-default-dev
ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client po-debconf
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff krb5-doc
krb5-user libhwloc-contrib-plugins libtool-doc ncurses-doc openmpi-doc
pciutils readline-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor
less www-browser gfortran | fortran-compiler keychain libpam-ssh
monkeysphere ssh-askpass libmail-box-perl
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs krb5-locales libgpm2 libcoarrays-openmpi-dev xauth
libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base ibverbs-providers intltool-debian libarchive-zip-perl libbsd0
libclang-common-7-dev libclc-amdgcn libclc-dev libclc-r600 libcroco3
libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 libedit2 libelf1
libevent-2.1-6 libevent-core-2.1-6 libevent-pthreads-2.1-6
libfile-stripnondeterminism-perl libgfortran5 libglib2.0-0 libgssapi-krb5-2
libhmsbeagle-dev libhmsbeagle1v5 libhwloc-dev libhwloc-plugins libhwloc5
libibverbs-dev libibverbs1 libicu63 libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 libllvm7 libltdl-dev libltdl7 libmagic-mgc libmagic1
libncurses-dev libnl-3-200 libnl-3-dev libnl-route-3-200 libnl-route-3-dev
libopenmpi-dev libopenmpi3 libpciaccess0 libpipeline1 libpmix2
libreadline-dev libsigsegv2 libtool libuchardet0 libxml2 m4 man-db
mesa-opencl-icd mpi-default-dev ocl-icd-libopencl1 openmpi-bin
openmpi-common openssh-client po-debconf sbuild-build-depends-mrbayes-dummy
The following packages will be upgraded:
libncurses6 libncursesw6 libtinfo6
3 upgraded, 76 newly installed, 0 to remove and 49 not upgraded.
Need to get 95.4 MB/95.4 MB of archives.
After this operation, 465 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-LC6R3g/apt_archive ./ sbuild-build-depends-mrbayes-dummy 0.invalid.0 [912 B]
Get:2 http://172.17.4.1/private buster-staging/main armhf libbsd0 armhf 0.9.1-2+deb10u1 [105 kB]
Get:3 http://172.17.4.1/private buster-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:4 http://172.17.4.1/private buster-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:5 http://172.17.4.1/private buster-staging/main armhf groff-base armhf 1.22.4-3+deb10u1 [782 kB]
Get:6 http://172.17.4.1/private buster-staging/main armhf libpipeline1 armhf 1.5.1-2 [26.6 kB]
Get:7 http://172.17.4.1/private buster-staging/main armhf man-db armhf 2.8.5-2 [1230 kB]
Get:8 http://172.17.4.1/private buster-staging/main armhf libncurses6 armhf 6.1+20181013-2+deb10u5 [78.8 kB]
Get:9 http://172.17.4.1/private buster-staging/main armhf libtinfo6 armhf 6.1+20181013-2+deb10u5 [312 kB]
Get:10 http://172.17.4.1/private buster-staging/main armhf libncursesw6 armhf 6.1+20181013-2+deb10u5 [103 kB]
Get:11 http://172.17.4.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.35-4+deb10u2 [242 kB]
Get:12 http://172.17.4.1/private buster-staging/main armhf libmagic1 armhf 1:5.35-4+deb10u2 [110 kB]
Get:13 http://172.17.4.1/private buster-staging/main armhf file armhf 1:5.35-4+deb10u2 [65.5 kB]
Get:14 http://172.17.4.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-9 [117 kB]
Get:15 http://172.17.4.1/private buster-staging/main armhf libevent-2.1-6 armhf 2.1.8-stable-4 [156 kB]
Get:16 http://172.17.4.1/private buster-staging/main armhf libedit2 armhf 3.1-20181209-1 [78.7 kB]
Get:17 http://172.17.4.1/private buster-staging/main armhf libkrb5support0 armhf 1.17-3+deb10u6 [62.7 kB]
Get:18 http://172.17.4.1/private buster-staging/main armhf libk5crypto3 armhf 1.17-3+deb10u6 [118 kB]
Get:19 http://172.17.4.1/private buster-staging/main armhf libkrb5-3 armhf 1.17-3+deb10u6 [317 kB]
Get:20 http://172.17.4.1/private buster-staging/main armhf libgssapi-krb5-2 armhf 1.17-3+deb10u6 [136 kB]
Get:21 http://172.17.4.1/private buster-staging/main armhf openssh-client armhf 1:7.9p1-10+deb10u4 [672 kB]
Get:22 http://172.17.4.1/private buster-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:23 http://172.17.4.1/private buster-staging/main armhf m4 armhf 1.4.18-2 [185 kB]
Get:24 http://172.17.4.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:25 http://172.17.4.1/private buster-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:26 http://172.17.4.1/private buster-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:27 http://172.17.4.1/private buster-staging/main armhf autopoint all 0.19.8.1-9 [434 kB]
Get:28 http://172.17.4.1/private buster-staging/main armhf libtool all 2.4.6-9 [547 kB]
Get:29 http://172.17.4.1/private buster-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:30 http://172.17.4.1/private buster-staging/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB]
Get:31 http://172.17.4.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB]
Get:32 http://172.17.4.1/private buster-staging/main armhf dh-strip-nondeterminism all 1.1.2-1 [13.0 kB]
Get:33 http://172.17.4.1/private buster-staging/main armhf libelf1 armhf 0.176-1.1+deb10u1 [158 kB]
Get:34 http://172.17.4.1/private buster-staging/main armhf dwz armhf 0.12-3 [66.0 kB]
Get:35 http://172.17.4.1/private buster-staging/main armhf libglib2.0-0 armhf 2.58.3-2+deb10u4 [1079 kB]
Get:36 http://172.17.4.1/private buster-staging/main armhf libicu63 armhf 63.1-6+deb10u3 [7973 kB]
Get:37 http://172.17.4.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-7+deb10u6 [572 kB]
Get:38 http://172.17.4.1/private buster-staging/main armhf libcroco3 armhf 0.6.12-3 [132 kB]
Get:39 http://172.17.4.1/private buster-staging/main armhf gettext armhf 0.19.8.1-9 [1219 kB]
Get:40 http://172.17.4.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:41 http://172.17.4.1/private buster-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:42 http://172.17.4.1/private buster-staging/main armhf debhelper all 12.1.1 [1016 kB]
Get:43 http://172.17.4.1/private buster-staging/main armhf libnl-3-200 armhf 3.4.0-1 [55.0 kB]
Get:44 http://172.17.4.1/private buster-staging/main armhf libnl-route-3-200 armhf 3.4.0-1 [132 kB]
Get:45 http://172.17.4.1/private buster-staging/main armhf libibverbs1 armhf 22.1-1 [43.5 kB]
Get:46 http://172.17.4.1/private buster-staging/main armhf ibverbs-providers armhf 22.1-1 [20.2 kB]
Get:47 http://172.17.4.1/private buster-staging/main armhf libllvm7 armhf 1:7.0.1-8+rpi3+deb10u2 [11.4 MB]
Get:48 http://172.17.4.1/private buster-staging/main armhf libclang-common-7-dev armhf 1:7.0.1-8+rpi3+deb10u2 [1343 kB]
Get:49 http://172.17.4.1/private buster-staging/main armhf libclc-dev all 0.2.0+git20180917-3 [26.9 kB]
Get:50 http://172.17.4.1/private buster-staging/main armhf libclc-amdgcn all 0.2.0+git20180917-3 [30.0 MB]
Get:51 http://172.17.4.1/private buster-staging/main armhf libclc-r600 all 0.2.0+git20180917-3 [19.9 MB]
Get:52 http://172.17.4.1/private buster-staging/main armhf libdrm-amdgpu1 armhf 2.4.97-1+rpi1 [26.1 kB]
Get:53 http://172.17.4.1/private buster-staging/main armhf libdrm-nouveau2 armhf 2.4.97-1+rpi1 [24.4 kB]
Get:54 http://172.17.4.1/private buster-staging/main armhf libdrm-radeon1 armhf 2.4.97-1+rpi1 [28.6 kB]
Get:55 http://172.17.4.1/private buster-staging/main armhf libevent-core-2.1-6 armhf 2.1.8-stable-4 [117 kB]
Get:56 http://172.17.4.1/private buster-staging/main armhf libevent-pthreads-2.1-6 armhf 2.1.8-stable-4 [47.6 kB]
Get:57 http://172.17.4.1/private buster-staging/main armhf libgfortran5 armhf 8.3.0-6+rpi1 [206 kB]
Get:58 http://172.17.4.1/private buster-staging/main armhf ocl-icd-libopencl1 armhf 2.2.12-2 [35.7 kB]
Get:59 http://172.17.4.1/private buster-staging/main armhf mesa-opencl-icd armhf 18.3.6-2+deb10u1 [6462 kB]
Get:60 http://172.17.4.1/private buster-staging/main armhf libhmsbeagle1v5 armhf 3.1.2+dfsg-6 [139 kB]
Get:61 http://172.17.4.1/private buster-staging/main armhf libhmsbeagle-dev armhf 3.1.2+dfsg-6 [217 kB]
Get:62 http://172.17.4.1/private buster-staging/main armhf libltdl7 armhf 2.4.6-9 [387 kB]
Get:63 http://172.17.4.1/private buster-staging/main armhf libhwloc5 armhf 1.11.12-3+rpi1 [86.3 kB]
Get:64 http://172.17.4.1/private buster-staging/main armhf libltdl-dev armhf 2.4.6-9 [159 kB]
Get:65 http://172.17.4.1/private buster-staging/main armhf libhwloc-dev armhf 1.11.12-3+rpi1 [142 kB]
Get:66 http://172.17.4.1/private buster-staging/main armhf libpciaccess0 armhf 0.14-1 [51.0 kB]
Get:67 http://172.17.4.1/private buster-staging/main armhf libhwloc-plugins armhf 1.11.12-3+rpi1 [16.0 kB]
Get:68 http://172.17.4.1/private buster-staging/main armhf libnl-3-dev armhf 3.4.0-1 [92.4 kB]
Get:69 http://172.17.4.1/private buster-staging/main armhf libnl-route-3-dev armhf 3.4.0-1 [145 kB]
Get:70 http://172.17.4.1/private buster-staging/main armhf libibverbs-dev armhf 22.1-1 [149 kB]
Get:71 http://172.17.4.1/private buster-staging/main armhf libncurses-dev armhf 6.1+20181013-2+deb10u5 [278 kB]
Get:72 http://172.17.4.1/private buster-staging/main armhf libpmix2 armhf 3.1.2-3+deb10u1 [424 kB]
Get:73 http://172.17.4.1/private buster-staging/main armhf libopenmpi3 armhf 3.1.3-11+rpi1 [1813 kB]
Get:74 http://172.17.4.1/private buster-staging/main armhf openmpi-common all 3.1.3-11+rpi1 [164 kB]
Get:75 http://172.17.4.1/private buster-staging/main armhf openmpi-bin armhf 3.1.3-11+rpi1 [197 kB]
Get:76 http://172.17.4.1/private buster-staging/main armhf libopenmpi-dev armhf 3.1.3-11+rpi1 [964 kB]
Get:77 http://172.17.4.1/private buster-staging/main armhf libreadline-dev armhf 7.0-5 [110 kB]
Get:78 http://172.17.4.1/private buster-staging/main armhf mpi-default-dev armhf 1.13 [5476 B]
debconf: delaying package configuration, since apt-utils is not installed
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update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
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Setting up libgssapi-krb5-2:armhf (1.17-3+deb10u6) ...
Setting up libcroco3:armhf (0.6.12-3) ...
Setting up autoconf (2.69-11) ...
Setting up dwz (0.12-3) ...
Setting up libnl-3-dev:armhf (3.4.0-1) ...
Setting up groff-base (1.22.4-3+deb10u1) ...
Setting up libllvm7:armhf (1:7.0.1-8+rpi3+deb10u2) ...
Setting up automake (1:1.16.1-4) ...
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Setting up man-db (2.8.5-2) ...
Not building database; man-db/auto-update is not 'true'.
Created symlink /etc/systemd/system/timers.target.wants/man-db.timer -> /lib/systemd/system/man-db.timer.
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up libnl-route-3-dev:armhf (3.4.0-1) ...
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Setting up openmpi-bin (3.1.3-11+rpi1) ...
update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode
update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode
Setting up libclc-amdgcn (0.2.0+git20180917-3) ...
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Setting up mesa-opencl-icd:armhf (18.3.6-2+deb10u1) ...
Setting up libhmsbeagle1v5 (3.1.2+dfsg-6) ...
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Setting up dh-autoreconf (19) ...
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Setting up sbuild-build-depends-mrbayes-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.28-10+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-187-generic armhf (armv8l)
Toolchain package versions: binutils_2.31.1-16+rpi2 dpkg-dev_1.19.7 g++-8_8.3.0-6+rpi1 gcc-8_8.3.0-6+rpi1 libc6-dev_2.28-10+rpi1 libstdc++-8-dev_8.3.0-6+rpi1 libstdc++6_8.3.0-6+rpi1 linux-libc-dev_4.18.20-2+rpi1
Package versions: adduser_3.118 apt_1.8.2.3 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.3+rpi1+deb10u10 base-passwd_3.5.46 bash_5.0-4 binutils_2.31.1-16+rpi2 binutils-arm-linux-gnueabihf_2.31.1-16+rpi2 binutils-common_2.31.1-16+rpi2 bsdmainutils_11.1.2 bsdutils_1:2.33.1-0.1 build-essential_12.6 bzip2_1.0.6-9.2~deb10u1 ca-certificates_20200601~deb10u2 coreutils_8.30-3 cpio_2.12+dfsg-9 cpp_4:8.3.0-1+rpi2 cpp-8_8.3.0-6+rpi1 dash_0.5.10.2-5 dbus_1.12.20-0+deb10u1 dbus-user-session_1.12.20-0+deb10u1 debconf_1.5.71 debhelper_12.1.1 debianutils_4.8.6.1 dh-autoreconf_19 dh-strip-nondeterminism_1.1.2-1 diffutils_1:3.7-3 dirmngr_2.2.12-1+rpi1+deb10u1 dmsetup_2:1.02.155-3 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.12-3 e2fslibs_1.44.5-1+deb10u3 e2fsprogs_1.44.5-1+deb10u3 e2fsprogs-l10n_1.44.5-1+deb10u3 fakeroot_1.23-1 fdisk_2.33.1-0.1 file_1:5.35-4+deb10u2 findutils_4.6.0+git+20190209-2 g++_4:8.3.0-1+rpi2 g++-8_8.3.0-6+rpi1 gcc_4:8.3.0-1+rpi2 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.4-2+rpi1+b19 gcc-5-base_5.5.0-8 gcc-8_8.3.0-6+rpi1 gcc-8-base_8.3.0-6+rpi1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gnupg_2.2.12-1+rpi1+deb10u1 gnupg-agent_2.2.12-1+rpi1+deb10u1 gnupg-l10n_2.2.12-1+rpi1+deb10u1 gnupg-utils_2.2.12-1+rpi1+deb10u1 gpg_2.2.12-1+rpi1+deb10u1 gpg-agent_2.2.12-1+rpi1+deb10u1 gpg-wks-client_2.2.12-1+rpi1+deb10u1 gpg-wks-server_2.2.12-1+rpi1+deb10u1 gpgconf_2.2.12-1+rpi1+deb10u1 gpgsm_2.2.12-1+rpi1+deb10u1 gpgv_2.2.12-1+rpi1+deb10u1 grep_3.3-1 groff-base_1.22.4-3+deb10u1 gzip_1.9-3 hostname_3.21 ibverbs-providers_22.1-1 inetutils-ping_2:1.9.4-7+deb10u1 init-system-helpers_1.56+nmu1 initramfs-tools_0.133+deb10u1 initramfs-tools-core_0.133+deb10u1 intltool-debian_0.35.0+20060710.5 klibc-utils_2.0.6-1+rpi1+deb10u1 kmod_26-1 libacl1_2.2.53-4 libapparmor1_2.13.2-10 libapt-pkg5.0_1.8.2.3 libarchive-zip-perl_1.64-1 libargon2-1_0~20171227-0.2 libasan5_8.3.0-6+rpi1 libassuan0_2.5.2-1 libatomic1_8.3.0-6+rpi1 libattr1_1:2.4.48-4 libaudit-common_1:2.8.4-3 libaudit1_1:2.8.4-3 libbinutils_2.31.1-16+rpi2 libblkid1_2.33.1-0.1 libbsd0_0.9.1-2+deb10u1 libbz2-1.0_1.0.6-9.2~deb10u1 libc-bin_2.28-10+rpi1 libc-dev-bin_2.28-10+rpi1 libc6_2.28-10+rpi1 libc6-dev_2.28-10+rpi1 libcap-ng0_0.7.9-2 libcap2_1:2.25-2 libcc1-0_8.3.0-6+rpi1 libclang-common-7-dev_1:7.0.1-8+rpi3+deb10u2 libclc-amdgcn_0.2.0+git20180917-3 libclc-dev_0.2.0+git20180917-3 libclc-r600_0.2.0+git20180917-3 libcom-err2_1.44.5-1+deb10u3 libcroco3_0.6.12-3 libcryptsetup12_2:2.1.0-5+deb10u2 libcryptsetup4_2:1.7.5-1 libdb5.3_5.3.28+dfsg1-0.5 libdbus-1-3_1.12.20-0+deb10u1 libdebconfclient0_0.249 libdevmapper1.02.1_2:1.02.155-3 libdpkg-perl_1.19.7 libdrm-amdgpu1_2.4.97-1+rpi1 libdrm-common_2.4.97-1+rpi1 libdrm-nouveau2_2.4.97-1+rpi1 libdrm-radeon1_2.4.97-1+rpi1 libdrm2_2.4.97-1+rpi1 libedit2_3.1-20181209-1 libelf1_0.176-1.1+deb10u1 libevent-2.1-6_2.1.8-stable-4 libevent-core-2.1-6_2.1.8-stable-4 libevent-pthreads-2.1-6_2.1.8-stable-4 libexpat1_2.2.6-2+deb10u1 libext2fs2_1.44.5-1+deb10u3 libfakeroot_1.23-1 libfdisk1_2.33.1-0.1 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.1.2-1 libfl2_2.6.4-6.2 libgcc-8-dev_8.3.0-6+rpi1 libgcc1_1:8.3.0-6+rpi1 libgcrypt20_1.8.4-5+deb10u1 libgdbm-compat4_1.18.1-4 libgdbm3_1.8.3-14 libgdbm6_1.18.1-4 libgfortran5_8.3.0-6+rpi1 libglib2.0-0_2.58.3-2+deb10u4 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.7-4+deb10u7 libgomp1_8.3.0-6+rpi1 libgpg-error-l10n_1.35-1 libgpg-error0_1.35-1 libgssapi-krb5-2_1.17-3+deb10u6 libhmsbeagle-dev_3.1.2+dfsg-6 libhmsbeagle1v5_3.1.2+dfsg-6 libhogweed4_3.4.1-1+deb10u1 libhwloc-dev_1.11.12-3+rpi1 libhwloc-plugins_1.11.12-3+rpi1 libhwloc5_1.11.12-3+rpi1 libibverbs-dev_22.1-1 libibverbs1_22.1-1 libicu63_63.1-6+deb10u3 libidn11_1.33-2.2 libidn2-0_2.0.5-1+deb10u1 libip4tc0_1.8.2-4 libisl19_0.20-2 libjson-c3_0.12.1+ds-2+deb10u1 libk5crypto3_1.17-3+deb10u6 libkeyutils1_1.6-6 libklibc_2.0.6-1+rpi1+deb10u1 libkmod2_26-1 libkrb5-3_1.17-3+deb10u6 libkrb5support0_1.17-3+deb10u6 libksba8_1.3.5-2 libldap-2.4-2_2.4.47+dfsg-3+rpi1+deb10u6 libldap-common_2.4.47+dfsg-3+rpi1+deb10u6 libllvm7_1:7.0.1-8+rpi3+deb10u2 libltdl-dev_2.4.6-9 libltdl7_2.4.6-9 liblz4-1_1.8.3-1+deb10u1 liblzma5_5.2.4-1 libmagic-mgc_1:5.35-4+deb10u2 libmagic1_1:5.35-4+deb10u2 libmount1_2.33.1-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libncurses-dev_6.1+20181013-2+deb10u5 libncurses5_6.1+20181013-2+deb10u2 libncurses6_6.1+20181013-2+deb10u5 libncursesw5_6.1+20181013-2+deb10u2 libncursesw6_6.1+20181013-2+deb10u5 libnettle6_3.4.1-1+deb10u1 libnl-3-200_3.4.0-1 libnl-3-dev_3.4.0-1 libnl-route-3-200_3.4.0-1 libnl-route-3-dev_3.4.0-1 libnpth0_1.6-1 libnss-systemd_241-7~deb10u8+rpi1 libopenmpi-dev_3.1.3-11+rpi1 libopenmpi3_3.1.3-11+rpi1 libp11-kit0_0.23.15-2+deb10u1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam-systemd_241-7~deb10u8+rpi1 libpam0g_1.3.1-5 libpciaccess0_0.14-1 libpcre3_2:8.39-12 libperl5.24_5.24.1-7 libperl5.28_5.28.1-6 libpipeline1_1.5.1-2 libplymouth4_0.9.4-1.1 libpmix2_3.1.2-3+deb10u1 libpng16-16_1.6.36-6 libprocps7_2:3.3.15-2 libreadline-dev_7.0-5 libreadline7_7.0-5 libsasl2-2_2.1.27+dfsg-1+deb10u1 libsasl2-modules-db_2.1.27+dfsg-1+deb10u1 libseccomp2_2.3.3-4 libselinux1_2.8-1+b1 libsemanage-common_2.8-2 libsemanage1_2.8-2 libsepol1_2.8-1 libsigsegv2_2.12-2 libsmartcols1_2.33.1-0.1 libsqlite3-0_3.27.2-3+deb10u1 libss2_1.44.5-1+deb10u3 libssl1.1_1.1.1d-0+deb10u6 libstdc++-8-dev_8.3.0-6+rpi1 libstdc++6_8.3.0-6+rpi1 libsystemd0_241-7~deb10u8+rpi1 libtasn1-6_4.13-3 libtinfo5_6.1+20181013-2+deb10u2 libtinfo6_6.1+20181013-2+deb10u5 libtool_2.4.6-9 libubsan1_8.3.0-6+rpi1 libuchardet0_0.0.6-3 libudev1_241-7~deb10u8+rpi1 libunistring2_0.9.10-1 libustr-1.0-1_1.0.4-6 libuuid1_2.33.1-0.1 libxml2_2.9.4+dfsg1-7+deb10u6 libzstd1_1.3.8+dfsg-3+rpi1+deb10u2 linux-base_4.6 linux-libc-dev_4.18.20-2+rpi1 login_1:4.5-1.1 lsb-base_10.2019051400+rpi1 m4_1.4.18-2 make_4.2.1-1.2 makedev_2.3.1-94 man-db_2.8.5-2 mawk_1.3.3-17 mesa-opencl-icd_18.3.6-2+deb10u1 mount_2.33.1-0.1 mpi-default-dev_1.13 multiarch-support_2.28-10+rpi1 nano_3.2-3 ncurses-base_6.1+20181013-2+deb10u2 ncurses-bin_6.1+20181013-2+deb10u2 netbase_5.6 ocl-icd-libopencl1_2.2.12-2 openmpi-bin_3.1.3-11+rpi1 openmpi-common_3.1.3-11+rpi1 openssh-client_1:7.9p1-10+deb10u4 openssl_1.1.1d-0+deb10u6 passwd_1:4.5-1.1 patch_2.7.6-3+deb10u1 perl_5.28.1-6 perl-base_5.28.1-6 perl-modules-5.24_5.24.1-7 perl-modules-5.28_5.28.1-6+deb10u1 pinentry-curses_1.1.0-2 plymouth_0.9.4-1.1 po-debconf_1.0.21 procps_2:3.3.15-2 raspbian-archive-keyring_20120528.2 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-mrbayes-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 systemd_241-7~deb10u8+rpi1 systemd-sysv_241-7~deb10u8+rpi1 sysvinit-utils_2.93-8 tar_1.30+dfsg-6 tzdata_2021a-0+deb10u1 udev_241-7~deb10u8+rpi1 util-linux_2.33.1-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Fri Jul 21 04:39:37 2017 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tillea@rki.de"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./mrbayes_3.2.6+dfsg-2.dsc
dpkg-source: info: extracting mrbayes in /<<BUILDDIR>>/mrbayes-3.2.6+dfsg
dpkg-source: info: unpacking mrbayes_3.2.6+dfsg.orig.tar.xz
dpkg-source: info: unpacking mrbayes_3.2.6+dfsg-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying as-needed.patch
dpkg-source: info: applying ldlibs.patch
Check disk space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 3.2.6+dfsg-2+b7
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-e9c5196d-b9ea-4a48-8113-1133bdafc9a8
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package mrbayes
dpkg-buildpackage: info: source version 3.2.6+dfsg-2+b7
dpkg-buildpackage: info: source distribution buster-staging
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --sourcedirectory=src
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<BUILDDIR>>/mrbayes-3.2.6+dfsg'
( cd src ; /usr/bin/make -f Makefile.in distclean )
make[2]: Entering directory '/<<BUILDDIR>>/mrbayes-3.2.6+dfsg/src'
rm -f *.o *~ mb
rm -rf Makefile config.log config.status config.h *.cache
make[2]: Leaving directory '/<<BUILDDIR>>/mrbayes-3.2.6+dfsg/src'
rm -f src/configure
rm -f mb mb-mpi src/mb
make[1]: Leaving directory '/<<BUILDDIR>>/mrbayes-3.2.6+dfsg'
dh_clean -O--sourcedirectory=src
debian/rules build-arch
dh build-arch --sourcedirectory=src
dh_update_autotools_config -a -O--sourcedirectory=src
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<BUILDDIR>>/mrbayes-3.2.6+dfsg'
#Configure for MPI at first
( cd src ; autoconf )
dh_auto_configure -- --with-beagle=/usr --enable-mpi=yes --enable-debug=yes
cd src && ./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --libexecdir=\${prefix}/lib/arm-linux-gnueabihf --disable-maintainer-mode --disable-dependency-tracking --with-beagle=/usr --enable-mpi=yes --enable-debug=yes
configure: WARNING: unrecognized options: --disable-silent-rules, --disable-maintainer-mode, --disable-dependency-tracking
configure: NOTICE: Because the variable $CFLAGS is defined in your shell, the
default MrBayes flags will be overridden. To ensure optimal performance, please check
that your $CFLAGS variable is set correctly. Alternatively, unset the $CFLAGS
variable in your shell in order to use the default MrBayes compiler options.
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for exp in -lm... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking for mpicc... yes
checking for SSE support... no
checking for /usr/include/libhmsbeagle/libhmsbeagle/beagle.h... yes
checking for /usr/include/libhmsbeagle/libhmsbeagle/platform.h... yes
checking for /usr/lib... yes
checking for readline in -lreadline... yes
checking for rl_completion_matches function... yes
checking for 32 or 64 bits cpu... 32
configure: creating ./config.status
config.status: creating Makefile
config.status: creating config.h
configure: WARNING: unrecognized options: --disable-silent-rules, --disable-maintainer-mode, --disable-dependency-tracking
make[1]: Leaving directory '/<<BUILDDIR>>/mrbayes-3.2.6+dfsg'
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<BUILDDIR>>/mrbayes-3.2.6+dfsg'
# build mb-mpi (from initial config)
LIBS="-Wl,--as-needed" dh_auto_build
cd src && make -j1
make[2]: Entering directory '/<<BUILDDIR>>/mrbayes-3.2.6+dfsg/src'
mpicc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bayes.o bayes.c
mpicc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o command.o command.c
mpicc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o model.o model.c
model.c: In function 'SetModelParams':
model.c:18739:48: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=]
sprintf (tempMult, "g_m{%d}", i+1);
^
In file included from /usr/include/stdio.h:873,
from bayes.h:10,
from model.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 16 bytes into a destination of size 15
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mpicc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mcmc.o mcmc.c
mcmc.c: In function 'ReusePreviousResults.part.14':
mcmc.c:15811:52: warning: '%d' directive writing between 1 and 10 bytes into a region of size between 3 and 210 [-Wformat-overflow=]
sprintf (fileName, "%s%s.tree%d.run%d.t", workingDir, localFileName, i+1, n+1);
^~
mcmc.c:15811:36: note: directive argument in the range [1, 2147483647]
sprintf (fileName, "%s%s.tree%d.run%d.t", workingDir, localFileName, i+1, n+1);
^~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:873,
from bayes.h:10,
from mcmc.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 14 and 230 bytes into a destination of size 220
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mcmc.c: In function 'ReopenMBPrintFiles':
mcmc.c:15265:50: warning: '%d' directive writing between 1 and 10 bytes into a region of size between 2 and 110 [-Wformat-overflow=]
sprintf (fileName, "%s.tree%d.run%d.t", localFileName, i+1, n+1);
^~
mcmc.c:15265:36: note: directive argument in the range [1, 2147483647]
sprintf (fileName, "%s.tree%d.run%d.t", localFileName, i+1, n+1);
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:873,
from bayes.h:10,
from mcmc.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 14 and 131 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mcmc.c: In function 'RunChain':
mcmc.c:17251:46: warning: '.ss' directive writing 3 bytes into a region of size between 1 and 220 [-Wformat-overflow=]
sprintf (bkupFileName,"%s.ss%d", ckpFileName,chainParams.numStepsSS-stepIndexSS);
^~~
In file included from /usr/include/stdio.h:873,
from bayes.h:10,
from mcmc.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 5 and 234 bytes into a destination of size 220
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mpicc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o likelihood.o likelihood.c
mpicc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o proposal.o proposal.c
mpicc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sumpt.o sumpt.c
sumpt.c: In function 'DoCompRefTree':
sumpt.c:4615:40: warning: '%d' directive writing between 1 and 10 bytes into a region of size between 7 and 126 [-Wformat-overflow=]
sprintf (inRefName, "%s.run%d.t", comptreeParams.comptFileName2, n+1);
^~
sumpt.c:4615:33: note: directive argument in the range [1, 2147483647]
sprintf (inRefName, "%s.run%d.t", comptreeParams.comptFileName2, n+1);
^~~~~~~~~~~~
In file included from /usr/include/stdio.h:873,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 8 and 136 bytes into a destination of size 130
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c: In function 'OpenSumtFiles':
sumpt.c:7101:40: warning: '.parts' directive writing 6 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (pFilename, "%s.parts", sumtParams.sumtOutfile);
^~~~~~
In file included from /usr/include/stdio.h:873,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 126 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7102:40: warning: '.tstat' directive writing 6 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (sFilename, "%s.tstat", sumtParams.sumtOutfile);
^~~~~~
In file included from /usr/include/stdio.h:873,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 126 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7103:40: warning: '.vstat' directive writing 6 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (vFilename, "%s.vstat", sumtParams.sumtOutfile);
^~~~~~
In file included from /usr/include/stdio.h:873,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 126 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7104:40: warning: '.con.tre' directive writing 8 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (cFilename, "%s.con.tre", sumtParams.sumtOutfile);
^~~~~~~~
In file included from /usr/include/stdio.h:873,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 9 and 128 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7105:40: warning: '.trprobs' directive writing 8 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (tFilename, "%s.trprobs", sumtParams.sumtOutfile);
^~~~~~~~
In file included from /usr/include/stdio.h:873,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 9 and 128 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7093:40: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (pFilename, "%s.tree%d.parts", sumtParams.sumtOutfile, i+1);
^~~~~
sumpt.c:7093:37: note: directive argument in the range [1, 2147483647]
sprintf (pFilename, "%s.tree%d.parts", sumtParams.sumtOutfile, i+1);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:873,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 13 and 141 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7094:40: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (sFilename, "%s.tree%d.tstat", sumtParams.sumtOutfile, i+1);
^~~~~
sumpt.c:7094:37: note: directive argument in the range [1, 2147483647]
sprintf (sFilename, "%s.tree%d.tstat", sumtParams.sumtOutfile, i+1);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:873,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 13 and 141 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7095:40: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (vFilename, "%s.tree%d.vstat", sumtParams.sumtOutfile, i+1);
^~~~~
sumpt.c:7095:37: note: directive argument in the range [1, 2147483647]
sprintf (vFilename, "%s.tree%d.vstat", sumtParams.sumtOutfile, i+1);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:873,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 13 and 141 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7096:40: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (cFilename, "%s.tree%d.con.tre", sumtParams.sumtOutfile, i+1);
^~~~~
sumpt.c:7096:37: note: directive argument in the range [1, 2147483647]
sprintf (cFilename, "%s.tree%d.con.tre", sumtParams.sumtOutfile, i+1);
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:873,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 15 and 143 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7097:40: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (tFilename, "%s.tree%d.trprobs", sumtParams.sumtOutfile, i+1);
^~~~~
sumpt.c:7097:37: note: directive argument in the range [1, 2147483647]
sprintf (tFilename, "%s.tree%d.trprobs", sumtParams.sumtOutfile, i+1);
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:873,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 15 and 143 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7165:32: warning: '.parts' directive writing 6 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (pFilename, "%s.parts", sumtParams.sumtOutfile);
^~~~~~
In file included from /usr/include/stdio.h:873,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 126 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7166:32: warning: '.tstat' directive writing 6 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (sFilename, "%s.tstat", sumtParams.sumtOutfile);
^~~~~~
In file included from /usr/include/stdio.h:873,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 126 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7167:32: warning: '.vstat' directive writing 6 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (vFilename, "%s.vstat", sumtParams.sumtOutfile);
^~~~~~
In file included from /usr/include/stdio.h:873,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 126 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7168:32: warning: '.con.tre' directive writing 8 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (cFilename, "%s.con.tre", sumtParams.sumtOutfile);
^~~~~~~~
In file included from /usr/include/stdio.h:873,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 9 and 128 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7169:32: warning: '.trprobs' directive writing 8 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (tFilename, "%s.trprobs", sumtParams.sumtOutfile);
^~~~~~~~
In file included from /usr/include/stdio.h:873,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 9 and 128 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7157:32: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (pFilename, "%s.tree%d.parts", sumtParams.sumtOutfile, treeNo+1);
^~~~~
sumpt.c:7157:29: note: directive argument in the range [-2147483647, 2147483647]
sprintf (pFilename, "%s.tree%d.parts", sumtParams.sumtOutfile, treeNo+1);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:873,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 13 and 142 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7158:32: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (sFilename, "%s.tree%d.tstat", sumtParams.sumtOutfile, treeNo+1);
^~~~~
sumpt.c:7158:29: note: directive argument in the range [-2147483647, 2147483647]
sprintf (sFilename, "%s.tree%d.tstat", sumtParams.sumtOutfile, treeNo+1);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:873,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 13 and 142 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7159:32: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (vFilename, "%s.tree%d.vstat", sumtParams.sumtOutfile, treeNo+1);
^~~~~
sumpt.c:7159:29: note: directive argument in the range [-2147483647, 2147483647]
sprintf (vFilename, "%s.tree%d.vstat", sumtParams.sumtOutfile, treeNo+1);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:873,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 13 and 142 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7160:32: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (cFilename, "%s.tree%d.con.tre", sumtParams.sumtOutfile, treeNo+1);
^~~~~
sumpt.c:7160:29: note: directive argument in the range [-2147483647, 2147483647]
sprintf (cFilename, "%s.tree%d.con.tre", sumtParams.sumtOutfile, treeNo+1);
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:873,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 15 and 144 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7161:32: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (tFilename, "%s.tree%d.trprobs", sumtParams.sumtOutfile, treeNo+1);
^~~~~
sumpt.c:7161:29: note: directive argument in the range [-2147483647, 2147483647]
sprintf (tFilename, "%s.tree%d.trprobs", sumtParams.sumtOutfile, treeNo+1);
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:873,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 15 and 144 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c: In function 'PrintBrlensToFile':
sumpt.c:7257:29: warning: '%s' directive writing up to 119 bytes into a region of size 100 [-Wformat-overflow=]
sprintf (filename, "%s.brlens", sumtParams.sumtOutfile);
^~ ~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:873,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 8 and 127 bytes into a destination of size 100
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7255:29: warning: '%s' directive writing up to 119 bytes into a region of size 100 [-Wformat-overflow=]
sprintf (filename, "%s.tree%d.brlens", sumtParams.sumtOutfile, treeNo+1);
^~ ~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7255:28: note: directive argument in the range [-2147483647, 2147483647]
sprintf (filename, "%s.tree%d.brlens", sumtParams.sumtOutfile, treeNo+1);
^~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:873,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 14 and 143 bytes into a destination of size 100
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c: In function 'DoSumt':
sumpt.c:4953:39: warning: '.run' directive writing 4 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (tempName, "%s.run%d.t", fileName, sumtParams.runId+1);
^~~~
sumpt.c:4953:36: note: directive argument in the range [-2147483647, 2147483647]
sprintf (tempName, "%s.run%d.t", fileName, sumtParams.runId+1);
^~~~~~~~~~~~
In file included from /usr/include/stdio.h:873,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 8 and 137 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:4951:39: warning: '.t' directive writing 2 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (tempName, "%s.t", fileName);
^~
In file included from /usr/include/stdio.h:873,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 3 and 122 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mpicc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o utils.o utils.c
mpicc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mbbeagle.o mbbeagle.c
mpicc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o best.o best.c
mpicc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -o mb bayes.o command.o model.o mcmc.o likelihood.o proposal.o sumpt.o utils.o mbbeagle.o best.o -Wl,-z,relro -L/usr/lib -lhmsbeagle -lreadline -lm
make[2]: Leaving directory '/<<BUILDDIR>>/mrbayes-3.2.6+dfsg/src'
mv src/mb ./mb-mpi
# Now - build mb
( cd src ; make clean )
make[2]: Entering directory '/<<BUILDDIR>>/mrbayes-3.2.6+dfsg/src'
rm -f *.o *~ mb
make[2]: Leaving directory '/<<BUILDDIR>>/mrbayes-3.2.6+dfsg/src'
dh_auto_configure -- --with-beagle=/usr --enable-mpi=no --enable-debug=yes
cd src && ./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --libexecdir=\${prefix}/lib/arm-linux-gnueabihf --disable-maintainer-mode --disable-dependency-tracking --with-beagle=/usr --enable-mpi=no --enable-debug=yes
configure: WARNING: unrecognized options: --disable-silent-rules, --disable-maintainer-mode, --disable-dependency-tracking
configure: NOTICE: Because the variable $CFLAGS is defined in your shell, the
default MrBayes flags will be overridden. To ensure optimal performance, please check
that your $CFLAGS variable is set correctly. Alternatively, unset the $CFLAGS
variable in your shell in order to use the default MrBayes compiler options.
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for exp in -lm... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking for SSE support... no
checking for /usr/include/libhmsbeagle/libhmsbeagle/beagle.h... yes
checking for /usr/include/libhmsbeagle/libhmsbeagle/platform.h... yes
checking for /usr/lib... yes
checking for readline in -lreadline... yes
checking for rl_completion_matches function... yes
checking for 32 or 64 bits cpu... 32
configure: creating ./config.status
config.status: creating Makefile
config.status: creating config.h
configure: WARNING: unrecognized options: --disable-silent-rules, --disable-maintainer-mode, --disable-dependency-tracking
LIBS="-Wl,--as-needed" dh_auto_build
cd src && make -j1
make[2]: Entering directory '/<<BUILDDIR>>/mrbayes-3.2.6+dfsg/src'
gcc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bayes.o bayes.c
gcc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o command.o command.c
gcc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o model.o model.c
model.c: In function 'SetModelParams':
model.c:18739:48: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=]
sprintf (tempMult, "g_m{%d}", i+1);
^
In file included from /usr/include/stdio.h:873,
from bayes.h:10,
from model.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 16 bytes into a destination of size 15
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mcmc.o mcmc.c
mcmc.c: In function 'ReusePreviousResults.part.11':
mcmc.c:15811:52: warning: '%d' directive writing between 1 and 10 bytes into a region of size between 3 and 210 [-Wformat-overflow=]
sprintf (fileName, "%s%s.tree%d.run%d.t", workingDir, localFileName, i+1, n+1);
^~
mcmc.c:15811:36: note: directive argument in the range [1, 2147483647]
sprintf (fileName, "%s%s.tree%d.run%d.t", workingDir, localFileName, i+1, n+1);
^~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:873,
from bayes.h:10,
from mcmc.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 14 and 230 bytes into a destination of size 220
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mcmc.c: In function 'ReopenMBPrintFiles':
mcmc.c:15265:50: warning: '%d' directive writing between 1 and 10 bytes into a region of size between 2 and 110 [-Wformat-overflow=]
sprintf (fileName, "%s.tree%d.run%d.t", localFileName, i+1, n+1);
^~
mcmc.c:15265:36: note: directive argument in the range [1, 2147483647]
sprintf (fileName, "%s.tree%d.run%d.t", localFileName, i+1, n+1);
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:873,
from bayes.h:10,
from mcmc.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 14 and 131 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mcmc.c: In function 'RunChain':
mcmc.c:17251:46: warning: '.ss' directive writing 3 bytes into a region of size between 1 and 220 [-Wformat-overflow=]
sprintf (bkupFileName,"%s.ss%d", ckpFileName,chainParams.numStepsSS-stepIndexSS);
^~~
In file included from /usr/include/stdio.h:873,
from bayes.h:10,
from mcmc.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 5 and 234 bytes into a destination of size 220
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o likelihood.o likelihood.c
gcc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o proposal.o proposal.c
gcc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sumpt.o sumpt.c
sumpt.c: In function 'DoCompRefTree':
sumpt.c:4615:40: warning: '%d' directive writing between 1 and 10 bytes into a region of size between 7 and 126 [-Wformat-overflow=]
sprintf (inRefName, "%s.run%d.t", comptreeParams.comptFileName2, n+1);
^~
sumpt.c:4615:33: note: directive argument in the range [1, 2147483647]
sprintf (inRefName, "%s.run%d.t", comptreeParams.comptFileName2, n+1);
^~~~~~~~~~~~
In file included from /usr/include/stdio.h:873,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 8 and 136 bytes into a destination of size 130
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c: In function 'OpenSumtFiles':
sumpt.c:7101:40: warning: '.parts' directive writing 6 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (pFilename, "%s.parts", sumtParams.sumtOutfile);
^~~~~~
In file included from /usr/include/stdio.h:873,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 126 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7102:40: warning: '.tstat' directive writing 6 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (sFilename, "%s.tstat", sumtParams.sumtOutfile);
^~~~~~
In file included from /usr/include/stdio.h:873,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 126 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7103:40: warning: '.vstat' directive writing 6 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (vFilename, "%s.vstat", sumtParams.sumtOutfile);
^~~~~~
In file included from /usr/include/stdio.h:873,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 126 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7104:40: warning: '.con.tre' directive writing 8 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (cFilename, "%s.con.tre", sumtParams.sumtOutfile);
^~~~~~~~
In file included from /usr/include/stdio.h:873,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 9 and 128 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7105:40: warning: '.trprobs' directive writing 8 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (tFilename, "%s.trprobs", sumtParams.sumtOutfile);
^~~~~~~~
In file included from /usr/include/stdio.h:873,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 9 and 128 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7093:40: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (pFilename, "%s.tree%d.parts", sumtParams.sumtOutfile, i+1);
^~~~~
sumpt.c:7093:37: note: directive argument in the range [1, 2147483647]
sprintf (pFilename, "%s.tree%d.parts", sumtParams.sumtOutfile, i+1);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:873,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 13 and 141 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7094:40: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (sFilename, "%s.tree%d.tstat", sumtParams.sumtOutfile, i+1);
^~~~~
sumpt.c:7094:37: note: directive argument in the range [1, 2147483647]
sprintf (sFilename, "%s.tree%d.tstat", sumtParams.sumtOutfile, i+1);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:873,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 13 and 141 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7095:40: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (vFilename, "%s.tree%d.vstat", sumtParams.sumtOutfile, i+1);
^~~~~
sumpt.c:7095:37: note: directive argument in the range [1, 2147483647]
sprintf (vFilename, "%s.tree%d.vstat", sumtParams.sumtOutfile, i+1);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:873,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 13 and 141 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7096:40: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (cFilename, "%s.tree%d.con.tre", sumtParams.sumtOutfile, i+1);
^~~~~
sumpt.c:7096:37: note: directive argument in the range [1, 2147483647]
sprintf (cFilename, "%s.tree%d.con.tre", sumtParams.sumtOutfile, i+1);
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:873,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 15 and 143 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7097:40: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (tFilename, "%s.tree%d.trprobs", sumtParams.sumtOutfile, i+1);
^~~~~
sumpt.c:7097:37: note: directive argument in the range [1, 2147483647]
sprintf (tFilename, "%s.tree%d.trprobs", sumtParams.sumtOutfile, i+1);
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:873,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 15 and 143 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7165:32: warning: '.parts' directive writing 6 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (pFilename, "%s.parts", sumtParams.sumtOutfile);
^~~~~~
In file included from /usr/include/stdio.h:873,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 126 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7166:32: warning: '.tstat' directive writing 6 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (sFilename, "%s.tstat", sumtParams.sumtOutfile);
^~~~~~
In file included from /usr/include/stdio.h:873,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 126 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7167:32: warning: '.vstat' directive writing 6 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (vFilename, "%s.vstat", sumtParams.sumtOutfile);
^~~~~~
In file included from /usr/include/stdio.h:873,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 126 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7168:32: warning: '.con.tre' directive writing 8 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (cFilename, "%s.con.tre", sumtParams.sumtOutfile);
^~~~~~~~
In file included from /usr/include/stdio.h:873,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 9 and 128 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7169:32: warning: '.trprobs' directive writing 8 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (tFilename, "%s.trprobs", sumtParams.sumtOutfile);
^~~~~~~~
In file included from /usr/include/stdio.h:873,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 9 and 128 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7157:32: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (pFilename, "%s.tree%d.parts", sumtParams.sumtOutfile, treeNo+1);
^~~~~
sumpt.c:7157:29: note: directive argument in the range [-2147483647, 2147483647]
sprintf (pFilename, "%s.tree%d.parts", sumtParams.sumtOutfile, treeNo+1);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:873,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 13 and 142 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7158:32: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (sFilename, "%s.tree%d.tstat", sumtParams.sumtOutfile, treeNo+1);
^~~~~
sumpt.c:7158:29: note: directive argument in the range [-2147483647, 2147483647]
sprintf (sFilename, "%s.tree%d.tstat", sumtParams.sumtOutfile, treeNo+1);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:873,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 13 and 142 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7159:32: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (vFilename, "%s.tree%d.vstat", sumtParams.sumtOutfile, treeNo+1);
^~~~~
sumpt.c:7159:29: note: directive argument in the range [-2147483647, 2147483647]
sprintf (vFilename, "%s.tree%d.vstat", sumtParams.sumtOutfile, treeNo+1);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:873,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 13 and 142 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7160:32: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (cFilename, "%s.tree%d.con.tre", sumtParams.sumtOutfile, treeNo+1);
^~~~~
sumpt.c:7160:29: note: directive argument in the range [-2147483647, 2147483647]
sprintf (cFilename, "%s.tree%d.con.tre", sumtParams.sumtOutfile, treeNo+1);
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:873,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 15 and 144 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7161:32: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (tFilename, "%s.tree%d.trprobs", sumtParams.sumtOutfile, treeNo+1);
^~~~~
sumpt.c:7161:29: note: directive argument in the range [-2147483647, 2147483647]
sprintf (tFilename, "%s.tree%d.trprobs", sumtParams.sumtOutfile, treeNo+1);
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:873,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 15 and 144 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c: In function 'PrintBrlensToFile':
sumpt.c:7257:29: warning: '%s' directive writing up to 119 bytes into a region of size 100 [-Wformat-overflow=]
sprintf (filename, "%s.brlens", sumtParams.sumtOutfile);
^~ ~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:873,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 8 and 127 bytes into a destination of size 100
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7255:29: warning: '%s' directive writing up to 119 bytes into a region of size 100 [-Wformat-overflow=]
sprintf (filename, "%s.tree%d.brlens", sumtParams.sumtOutfile, treeNo+1);
^~ ~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7255:28: note: directive argument in the range [-2147483647, 2147483647]
sprintf (filename, "%s.tree%d.brlens", sumtParams.sumtOutfile, treeNo+1);
^~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:873,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 14 and 143 bytes into a destination of size 100
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c: In function 'DoSumt':
sumpt.c:4953:39: warning: '.run' directive writing 4 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (tempName, "%s.run%d.t", fileName, sumtParams.runId+1);
^~~~
sumpt.c:4953:36: note: directive argument in the range [-2147483647, 2147483647]
sprintf (tempName, "%s.run%d.t", fileName, sumtParams.runId+1);
^~~~~~~~~~~~
In file included from /usr/include/stdio.h:873,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 8 and 137 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:4951:39: warning: '.t' directive writing 2 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (tempName, "%s.t", fileName);
^~
In file included from /usr/include/stdio.h:873,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 3 and 122 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o utils.o utils.c
gcc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mbbeagle.o mbbeagle.c
gcc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o best.o best.c
gcc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -o mb bayes.o command.o model.o mcmc.o likelihood.o proposal.o sumpt.o utils.o mbbeagle.o best.o -Wl,-z,relro -L/usr/lib -lhmsbeagle -lreadline -lm
make[2]: Leaving directory '/<<BUILDDIR>>/mrbayes-3.2.6+dfsg/src'
mv src/mb .
make[1]: Leaving directory '/<<BUILDDIR>>/mrbayes-3.2.6+dfsg'
dh_auto_test -a -O--sourcedirectory=src
fakeroot debian/rules binary-arch
dh binary-arch --sourcedirectory=src
dh_testroot -a -O--sourcedirectory=src
dh_prep -a -O--sourcedirectory=src
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<BUILDDIR>>/mrbayes-3.2.6+dfsg'
echo "Do not try to install to /usr/local/bin"
Do not try to install to /usr/local/bin
make[1]: Leaving directory '/<<BUILDDIR>>/mrbayes-3.2.6+dfsg'
dh_install -a -O--sourcedirectory=src
dh_installdocs -a -O--sourcedirectory=src
dh_installchangelogs -a -O--sourcedirectory=src
dh_installman -a -O--sourcedirectory=src
dh_installinit -a -O--sourcedirectory=src
dh_perl -a -O--sourcedirectory=src
dh_link -a -O--sourcedirectory=src
dh_strip_nondeterminism -a -O--sourcedirectory=src
debian/rules override_dh_compress
make[1]: Entering directory '/<<BUILDDIR>>/mrbayes-3.2.6+dfsg'
dh_compress --exclude=.pdf
make[1]: Leaving directory '/<<BUILDDIR>>/mrbayes-3.2.6+dfsg'
dh_fixperms -a -O--sourcedirectory=src
dh_missing -a -O--sourcedirectory=src
dh_strip -a -O--sourcedirectory=src
dh_makeshlibs -a -O--sourcedirectory=src
dh_shlibdeps -a -O--sourcedirectory=src
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrbayes/usr/bin/mb was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrbayes-mpi/usr/lib/mrbayes-mpi/mb-mpi was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
dh_installdeb -a -O--sourcedirectory=src
dh_gencontrol -a -O--sourcedirectory=src
dh_md5sums -a -O--sourcedirectory=src
dh_builddeb -a -O--sourcedirectory=src
dpkg-deb: building package 'mrbayes-dbgsym' in '../mrbayes-dbgsym_3.2.6+dfsg-2+b7_armhf.deb'.
dpkg-deb: building package 'mrbayes' in '../mrbayes_3.2.6+dfsg-2+b7_armhf.deb'.
dpkg-deb: building package 'mrbayes-mpi' in '../mrbayes-mpi_3.2.6+dfsg-2+b7_armhf.deb'.
dpkg-deb: building package 'mrbayes-mpi-dbgsym' in '../mrbayes-mpi-dbgsym_3.2.6+dfsg-2+b7_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../mrbayes_3.2.6+dfsg-2+b7_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2023-12-26T04:20:49Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
mrbayes_3.2.6+dfsg-2+b7_armhf.changes:
--------------------------------------
Format: 1.8
Date: Wed, 19 Jul 2017 23:40:13 -0400
Source: mrbayes (3.2.6+dfsg-2)
Binary: mrbayes mrbayes-dbgsym mrbayes-mpi mrbayes-mpi-dbgsym
Binary-Only: yes
Architecture: armhf
Version: 3.2.6+dfsg-2+b7
Distribution: buster-staging
Urgency: low
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Description:
mrbayes - Bayesian Inference of Phylogeny
mrbayes-mpi - Bayesian Inference of Phylogeny - mpi version
Changes:
mrbayes (3.2.6+dfsg-2+b7) buster-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
Checksums-Sha1:
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30ef86d4494666b45713a4d1426f05661f36ad0d 487056 mrbayes-mpi_3.2.6+dfsg-2+b7_armhf.deb
f2246f61a8ad81e257c6e38cc5c5b20c39e47c47 7421 mrbayes_3.2.6+dfsg-2+b7_armhf.buildinfo
0095d4ab15a3df9afb8b3232de23ec39ec202517 581152 mrbayes_3.2.6+dfsg-2+b7_armhf.deb
Checksums-Sha256:
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1b839769db4aff8acb8a7210bda1f8da9981d232cc3bf013b3f52c16b38b959a 487056 mrbayes-mpi_3.2.6+dfsg-2+b7_armhf.deb
7c7b3657e4e379c79c3e509ec812dd6a31b0a59973276559417266a4bb43c4c5 7421 mrbayes_3.2.6+dfsg-2+b7_armhf.buildinfo
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Files:
2d306e959ac73425264b21bf79177bc3 1010436 debug optional mrbayes-dbgsym_3.2.6+dfsg-2+b7_armhf.deb
575c6bf2643b4652a659d41bb9669c1c 1034992 debug optional mrbayes-mpi-dbgsym_3.2.6+dfsg-2+b7_armhf.deb
07c27b484d488edf1e65a2d8f52d71f1 487056 science optional mrbayes-mpi_3.2.6+dfsg-2+b7_armhf.deb
330f2fa5d5c8b0de3211a0a90f10bbb2 7421 science optional mrbayes_3.2.6+dfsg-2+b7_armhf.buildinfo
0401fbeac45abf46c99671b6128f5f2a 581152 science optional mrbayes_3.2.6+dfsg-2+b7_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
mrbayes-dbgsym_3.2.6+dfsg-2+b7_armhf.deb
----------------------------------------
new Debian package, version 2.0.
size 1010436 bytes: control archive=540 bytes.
402 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: mrbayes-dbgsym
Source: mrbayes (3.2.6+dfsg-2)
Version: 3.2.6+dfsg-2+b7
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1062
Depends: mrbayes (= 3.2.6+dfsg-2+b7)
Section: debug
Priority: optional
Description: debug symbols for mrbayes
Build-Ids: 1d22e766e422ac6995e65a8c701f099c25e52c7f
drwxr-xr-x root/root 0 2017-07-20 03:40 ./
drwxr-xr-x root/root 0 2017-07-20 03:40 ./usr/
drwxr-xr-x root/root 0 2017-07-20 03:40 ./usr/lib/
drwxr-xr-x root/root 0 2017-07-20 03:40 ./usr/lib/debug/
drwxr-xr-x root/root 0 2017-07-20 03:40 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2017-07-20 03:40 ./usr/lib/debug/.build-id/1d/
-rw-r--r-- root/root 1076376 2017-07-20 03:40 ./usr/lib/debug/.build-id/1d/22e766e422ac6995e65a8c701f099c25e52c7f.debug
drwxr-xr-x root/root 0 2017-07-20 03:40 ./usr/share/
drwxr-xr-x root/root 0 2017-07-20 03:40 ./usr/share/doc/
lrwxrwxrwx root/root 0 2017-07-20 03:40 ./usr/share/doc/mrbayes-dbgsym -> mrbayes
mrbayes-mpi-dbgsym_3.2.6+dfsg-2+b7_armhf.deb
--------------------------------------------
new Debian package, version 2.0.
size 1034992 bytes: control archive=548 bytes.
414 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: mrbayes-mpi-dbgsym
Source: mrbayes (3.2.6+dfsg-2)
Version: 3.2.6+dfsg-2+b7
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1087
Depends: mrbayes-mpi (= 3.2.6+dfsg-2+b7)
Section: debug
Priority: optional
Description: debug symbols for mrbayes-mpi
Build-Ids: 703a935ec06b468dda3a215d58c00052b482163a
drwxr-xr-x root/root 0 2017-07-20 03:40 ./
drwxr-xr-x root/root 0 2017-07-20 03:40 ./usr/
drwxr-xr-x root/root 0 2017-07-20 03:40 ./usr/lib/
drwxr-xr-x root/root 0 2017-07-20 03:40 ./usr/lib/debug/
drwxr-xr-x root/root 0 2017-07-20 03:40 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2017-07-20 03:40 ./usr/lib/debug/.build-id/70/
-rw-r--r-- root/root 1102748 2017-07-20 03:40 ./usr/lib/debug/.build-id/70/3a935ec06b468dda3a215d58c00052b482163a.debug
drwxr-xr-x root/root 0 2017-07-20 03:40 ./usr/share/
drwxr-xr-x root/root 0 2017-07-20 03:40 ./usr/share/doc/
lrwxrwxrwx root/root 0 2017-07-20 03:40 ./usr/share/doc/mrbayes-mpi-dbgsym -> mrbayes-mpi
mrbayes-mpi_3.2.6+dfsg-2+b7_armhf.deb
-------------------------------------
new Debian package, version 2.0.
size 487056 bytes: control archive=1084 bytes.
1037 bytes, 21 lines control
485 bytes, 7 lines md5sums
Package: mrbayes-mpi
Source: mrbayes (3.2.6+dfsg-2)
Version: 3.2.6+dfsg-2+b7
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1382
Depends: libc6 (>= 2.7), libhmsbeagle1v5 (>= 3.1.2+dfsg), libopenmpi3, libreadline7 (>= 6.0), mpi-default-bin, ssh
Suggests: mpi-default, mrbayes-doc
Section: science
Priority: optional
Homepage: http://mrbayes.csit.fsu.edu/
Description: Bayesian Inference of Phylogeny - mpi version
Bayesian inference of phylogeny is based upon a quantity called the posterior
probability distribution of trees, which is the probability of a tree
conditioned on the observations. The conditioning is accomplished using
Bayes's theorem. The posterior probability distribution of trees is
impossible to calculate analytically; instead, MrBayes uses a simulation
technique called Markov chain Monte Carlo (or MCMC) to approximate the
posterior probabilities of trees.
.
This package offers a binary compiled for parallel computation with MPI.
drwxr-xr-x root/root 0 2017-07-20 03:40 ./
drwxr-xr-x root/root 0 2017-07-20 03:40 ./usr/
drwxr-xr-x root/root 0 2017-07-20 03:40 ./usr/bin/
-rwxr-xr-x root/root 162 2017-07-20 03:40 ./usr/bin/mb-mpi
drwxr-xr-x root/root 0 2017-07-20 03:40 ./usr/lib/
drwxr-xr-x root/root 0 2017-07-20 03:40 ./usr/lib/mrbayes-mpi/
-rwxr-xr-x root/root 1395100 2017-07-20 03:40 ./usr/lib/mrbayes-mpi/mb-mpi
drwxr-xr-x root/root 0 2017-07-20 03:40 ./usr/share/
drwxr-xr-x root/root 0 2017-07-20 03:40 ./usr/share/doc/
drwxr-xr-x root/root 0 2017-07-20 03:40 ./usr/share/doc/mrbayes-mpi/
-rw-r--r-- root/root 348 2017-07-20 03:40 ./usr/share/doc/mrbayes-mpi/README.Debian
-rw-r--r-- root/root 224 2017-07-20 03:40 ./usr/share/doc/mrbayes-mpi/changelog.Debian.armhf.gz
-rw-r--r-- root/root 2027 2017-07-20 03:40 ./usr/share/doc/mrbayes-mpi/changelog.Debian.gz
-rw-r--r-- root/root 1482 2017-07-20 03:40 ./usr/share/doc/mrbayes-mpi/copyright
drwxr-xr-x root/root 0 2017-07-20 03:40 ./usr/share/man/
drwxr-xr-x root/root 0 2017-07-20 03:40 ./usr/share/man/man1/
-rw-r--r-- root/root 226 2017-07-20 03:40 ./usr/share/man/man1/mb-mpi.1.gz
mrbayes_3.2.6+dfsg-2+b7_armhf.deb
---------------------------------
new Debian package, version 2.0.
size 581152 bytes: control archive=1280 bytes.
894 bytes, 19 lines control
1187 bytes, 16 lines md5sums
Package: mrbayes
Source: mrbayes (3.2.6+dfsg-2)
Version: 3.2.6+dfsg-2+b7
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1463
Depends: libc6 (>= 2.7), libhmsbeagle1v5 (>= 3.1.2+dfsg), libreadline7 (>= 6.0)
Suggests: mrbayes-doc
Section: science
Priority: optional
Homepage: http://mrbayes.csit.fsu.edu/
Description: Bayesian Inference of Phylogeny
Bayesian inference of phylogeny is based upon a quantity called the posterior
probability distribution of trees, which is the probability of a tree
conditioned on the observations. The conditioning is accomplished using
Bayes's theorem. The posterior probability distribution of trees is
impossible to calculate analytically; instead, MrBayes uses a simulation
technique called Markov chain Monte Carlo (or MCMC) to approximate the
posterior probabilities of trees.
drwxr-xr-x root/root 0 2017-07-20 03:40 ./
drwxr-xr-x root/root 0 2017-07-20 03:40 ./usr/
drwxr-xr-x root/root 0 2017-07-20 03:40 ./usr/bin/
-rwxr-xr-x root/root 1370484 2017-07-20 03:40 ./usr/bin/mb
drwxr-xr-x root/root 0 2017-07-20 03:40 ./usr/share/
drwxr-xr-x root/root 0 2017-07-20 03:40 ./usr/share/doc/
drwxr-xr-x root/root 0 2017-07-20 03:40 ./usr/share/doc/mrbayes/
-rw-r--r-- root/root 311 2017-07-20 03:40 ./usr/share/doc/mrbayes/README.Debian
-rw-r--r-- root/root 262 2017-07-20 03:40 ./usr/share/doc/mrbayes/README.test
-rw-r--r-- root/root 224 2017-07-20 03:40 ./usr/share/doc/mrbayes/changelog.Debian.armhf.gz
-rw-r--r-- root/root 2027 2017-07-20 03:40 ./usr/share/doc/mrbayes/changelog.Debian.gz
-rw-r--r-- root/root 1482 2017-07-20 03:40 ./usr/share/doc/mrbayes/copyright
drwxr-xr-x root/root 0 2017-07-20 03:40 ./usr/share/doc/mrbayes/examples/
-rw-r--r-- root/root 3041 2015-04-07 17:23 ./usr/share/doc/mrbayes/examples/avian_ovomucoids.nex.gz
-rw-r--r-- root/root 1689 2015-01-27 12:31 ./usr/share/doc/mrbayes/examples/codon.nex
-rw-r--r-- root/root 15939 2015-01-27 12:31 ./usr/share/doc/mrbayes/examples/cynmix.nex.gz
-rw-r--r-- root/root 8740 2015-01-27 12:31 ./usr/share/doc/mrbayes/examples/finch.nex.gz
-rw-r--r-- root/root 60092 2015-04-07 17:23 ./usr/share/doc/mrbayes/examples/hymfossil.nex.gz
-rw-r--r-- root/root 2932 2015-01-27 12:31 ./usr/share/doc/mrbayes/examples/primates.nex.gz
-rw-r--r-- root/root 2563 2014-11-21 11:58 ./usr/share/doc/mrbayes/examples/replicase.nex.gz
-rw-r--r-- root/root 9885 2015-04-07 17:23 ./usr/share/doc/mrbayes/examples/sceloporus.nex.gz
-rw-r--r-- root/root 405 2017-07-20 03:40 ./usr/share/doc/mrbayes/run-unit-test
drwxr-xr-x root/root 0 2017-07-20 03:40 ./usr/share/man/
drwxr-xr-x root/root 0 2017-07-20 03:40 ./usr/share/man/man1/
-rw-r--r-- root/root 206 2017-07-20 03:40 ./usr/share/man/man1/mb.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 36088
Build-Time: 361
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 240
Job: mrbayes_3.2.6+dfsg-2
Machine Architecture: armhf
Package: mrbayes
Package-Time: 618
Source-Version: 3.2.6+dfsg-2
Space: 36088
Status: successful
Version: 3.2.6+dfsg-2+b7
--------------------------------------------------------------------------------
Finished at 2023-12-26T04:20:49Z
Build needed 00:10:18, 36088k disk space