mrbayes →
3.2.6+dfsg-2+b5 →
armhf → 2018-05-03 02:47:01
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-03
+==============================================================================+
| mrbayes 3.2.6+dfsg-2+b5 (armhf) Thu, 03 May 2018 02:12:27 +0000 |
+==============================================================================+
Package: mrbayes
Version: 3.2.6+dfsg-2+b5
Source Version: 3.2.6+dfsg-2
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-4d13d72e-0ca9-4f3c-af96-0ffae00d2bac' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [10.7 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [12.5 MB]
Fetched 23.2 MB in 28s (831 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'mrbayes' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/mrbayes.git
Please use:
git clone https://anonscm.debian.org/git/debian-med/mrbayes.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 2653 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main mrbayes 3.2.6+dfsg-2 (dsc) [2381 B]
Get:2 http://172.17.0.1/private buster-staging/main mrbayes 3.2.6+dfsg-2 (tar) [2644 kB]
Get:3 http://172.17.0.1/private buster-staging/main mrbayes 3.2.6+dfsg-2 (diff) [6716 B]
Fetched 2653 kB in 0s (6816 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/mrbayes-gWZ656/mrbayes-3.2.6+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/mrbayes-gWZ656' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-gYTk9q/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-gYTk9q/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-gYTk9q/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-gYTk9q/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-gYTk9q/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-gYTk9q/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-gYTk9q/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-gYTk9q/apt_archive ./ Packages [433 B]
Fetched 2109 B in 1s (3072 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates dbus dbus-user-session e2fsprogs-l10n libexpat1
libnss-systemd libpam-systemd libssl1.1 openssl systemd-sysv
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-gYTk9q/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 13964 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 9), libreadline-dev, mpi-default-dev, libhmsbeagle-dev (<< 2.1-1) | libhmsbeagle-dev (>= 2.1-2), autoconf, automake
Filtered Build-Depends: debhelper (>= 9), libreadline-dev, mpi-default-dev, libhmsbeagle-dev (<< 2.1-1) | libhmsbeagle-dev (>= 2.1-2), autoconf, automake
dpkg-deb: building package 'sbuild-build-depends-mrbayes-dummy' in '/<<BUILDDIR>>/resolver-gYTk9q/apt_archive/sbuild-build-depends-mrbayes-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-mrbayes-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-gYTk9q/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-gYTk9q/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-gYTk9q/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-gYTk9q/apt_archive ./ Sources [546 B]
Get:5 copy:/<<BUILDDIR>>/resolver-gYTk9q/apt_archive ./ Packages [631 B]
Fetched 2510 B in 1s (3606 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install mrbayes build dependencies (apt-based resolver)
-------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates dbus dbus-user-session e2fsprogs-l10n libnss-systemd
libpam-systemd libssl1.1 openssl systemd-sysv
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base
ibverbs-providers intltool-debian libarchive-zip-perl libbsd0
libclang-common-5.0-dev libclc-amdgcn libclc-dev libclc-r600 libcroco3
libdrm-amdgpu1 libdrm-freedreno1 libdrm-nouveau2 libdrm-radeon1 libedit2
libelf1 libevent-2.1-6 libevent-core-2.1-6 libevent-pthreads-2.1-6
libfile-stripnondeterminism-perl libgfortran4 libglib2.0-0 libgssapi-krb5-2
libhmsbeagle-dev libhmsbeagle1v5 libhwloc-dev libhwloc-plugins libhwloc5
libibverbs-dev libibverbs1 libicu57 libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 libllvm5.0 libltdl-dev libltdl7 libmagic-mgc libmagic1
libnl-3-200 libnl-route-3-200 libopenmpi-dev libopenmpi3 libpciaccess0
libpipeline1 libpmix2 libreadline-dev libsensors4 libsigsegv2 libssl1.0.2
libtimedate-perl libtinfo-dev libtool libxml2 m4 man-db mesa-opencl-icd
mpi-default-dev ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client
po-debconf
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation dh-make dwz gettext-doc libasprintf-dev libgettextpo-dev groff
krb5-doc krb5-user libhwloc-contrib-plugins libtool-doc openmpi-doc pciutils
readline-doc lm-sensors gfortran | fortran95-compiler gcj-jdk m4-doc
apparmor less www-browser gfortran keychain libpam-ssh monkeysphere
ssh-askpass libmail-box-perl
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs krb5-locales xauth libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base
ibverbs-providers intltool-debian libarchive-zip-perl libbsd0
libclang-common-5.0-dev libclc-amdgcn libclc-dev libclc-r600 libcroco3
libdrm-amdgpu1 libdrm-freedreno1 libdrm-nouveau2 libdrm-radeon1 libedit2
libelf1 libevent-2.1-6 libevent-core-2.1-6 libevent-pthreads-2.1-6
libfile-stripnondeterminism-perl libgfortran4 libglib2.0-0 libgssapi-krb5-2
libhmsbeagle-dev libhmsbeagle1v5 libhwloc-dev libhwloc-plugins libhwloc5
libibverbs-dev libibverbs1 libicu57 libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 libllvm5.0 libltdl-dev libltdl7 libmagic-mgc libmagic1
libnl-3-200 libnl-route-3-200 libopenmpi-dev libopenmpi3 libpciaccess0
libpipeline1 libpmix2 libreadline-dev libsensors4 libsigsegv2 libssl1.0.2
libtimedate-perl libtinfo-dev libtool libxml2 m4 man-db mesa-opencl-icd
mpi-default-dev ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client
po-debconf sbuild-build-depends-mrbayes-dummy
0 upgraded, 76 newly installed, 0 to remove and 0 not upgraded.
Need to get 72.6 MB/82.1 MB of archives.
After this operation, 364 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-gYTk9q/apt_archive ./ sbuild-build-depends-mrbayes-dummy 0.invalid.0 [912 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-10 [1005 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.5.0-1 [24.6 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.8.3-2 [1146 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf libssl1.0.2 armhf 1.0.2o-1 [888 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-6 [117 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf libevent-2.1-6 armhf 2.1.8-stable-4 [156 kB]
Get:9 http://172.17.0.1/private buster-staging/main armhf openssh-client armhf 1:7.7p1-2 [672 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.15.1-3.1 [736 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-6 [434 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-2.1 [547 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 17 [16.5 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.60-1 [95.6 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.041-1 [19.9 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 0.041-1 [12.0 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.56.1-2 [2754 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-6 [1218 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf debhelper all 11.2.1 [1013 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf libibverbs1 armhf 17.1-1 [38.9 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf ibverbs-providers armhf 17.1-1 [19.3 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf libllvm5.0 armhf 1:5.0.1-4+rpi1 [11.8 MB]
Get:30 http://172.17.0.1/private buster-staging/main armhf libclang-common-5.0-dev armhf 1:5.0.1-4+rpi1 [1279 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf libclc-dev all 0.2.0+git20171106-1 [25.3 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf libclc-amdgcn all 0.2.0+git20171106-1 [20.4 MB]
Get:33 http://172.17.0.1/private buster-staging/main armhf libclc-r600 all 0.2.0+git20171106-1 [15.4 MB]
Get:34 http://172.17.0.1/private buster-staging/main armhf libdrm-amdgpu1 armhf 2.4.91-2+rpi1 [26.9 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf libdrm-freedreno1 armhf 2.4.91-2+rpi1 [25.1 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf libdrm-nouveau2 armhf 2.4.91-2+rpi1 [24.3 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf libdrm-radeon1 armhf 2.4.91-2+rpi1 [28.8 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf libelf1 armhf 0.170-0.4 [160 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf libevent-core-2.1-6 armhf 2.1.8-stable-4 [117 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf libevent-pthreads-2.1-6 armhf 2.1.8-stable-4 [47.6 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf libgfortran4 armhf 7.3.0-12 [191 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf libsensors4 armhf 1:3.4.0-4+b1 [50.4 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf mesa-opencl-icd armhf 17.3.9-1 [6458 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf libhmsbeagle1v5 armhf 2.1.2+git20180307-1 [89.3 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf libhmsbeagle-dev armhf 2.1.2+git20180307-1 [153 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf libltdl7 armhf 2.4.6-2.1 [386 kB]
Get:47 http://172.17.0.1/private buster-staging/main armhf libhwloc5 armhf 1.11.10-1+rpi1 [85.7 kB]
Get:48 http://172.17.0.1/private buster-staging/main armhf libltdl-dev armhf 2.4.6-2.1 [158 kB]
Get:49 http://172.17.0.1/private buster-staging/main armhf libhwloc-dev armhf 1.11.10-1+rpi1 [141 kB]
Get:50 http://172.17.0.1/private buster-staging/main armhf libpciaccess0 armhf 0.14-1 [51.0 kB]
Get:51 http://172.17.0.1/private buster-staging/main armhf libhwloc-plugins armhf 1.11.10-1+rpi1 [15.4 kB]
Get:52 http://172.17.0.1/private buster-staging/main armhf libibverbs-dev armhf 17.1-1 [89.8 kB]
Get:53 http://172.17.0.1/private buster-staging/main armhf libpmix2 armhf 2.1.1~rc1-2 [284 kB]
Get:54 http://172.17.0.1/private buster-staging/main armhf libopenmpi3 armhf 3.0.1-9+rpi1 [1725 kB]
Get:55 http://172.17.0.1/private buster-staging/main armhf openmpi-common all 3.0.1-9+rpi1 [158 kB]
Get:56 http://172.17.0.1/private buster-staging/main armhf openmpi-bin armhf 3.0.1-9+rpi1 [198 kB]
Get:57 http://172.17.0.1/private buster-staging/main armhf libopenmpi-dev armhf 3.0.1-9+rpi1 [928 kB]
Get:58 http://172.17.0.1/private buster-staging/main armhf libtinfo-dev armhf 6.1-1 [66.6 kB]
Get:59 http://172.17.0.1/private buster-staging/main armhf libreadline-dev armhf 7.0-3 [109 kB]
Get:60 http://172.17.0.1/private buster-staging/main armhf mpi-default-dev armhf 1.12+rpi1 [5440 B]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up openmpi-common (3.0.1-9+rpi1) ...
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Setting up autotools-dev (20180224.1) ...
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Setting up libsensors4:armhf (1:3.4.0-4+b1) ...
Setting up libdrm-radeon1:armhf (2.4.91-2+rpi1) ...
Setting up ocl-icd-libopencl1:armhf (2.2.12-1) ...
Setting up libkeyutils1:armhf (1.5.9-9.2) ...
Setting up libdrm-nouveau2:armhf (2.4.91-2+rpi1) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libnl-3-200:armhf (3.2.27-2) ...
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Setting up gettext (0.19.8.1-6) ...
Setting up libllvm5.0:armhf (1:5.0.1-4+rpi1) ...
Setting up libnl-route-3-200:armhf (3.2.27-2) ...
Setting up autoconf (2.69-11) ...
Setting up file (1:5.32-2) ...
Setting up libhwloc5:armhf (1.11.10-1+rpi1) ...
Setting up libkrb5support0:armhf (1.16-2) ...
Setting up libhwloc-plugins (1.11.10-1+rpi1) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up automake (1:1.15.1-3.1) ...
update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode
Setting up man-db (2.8.3-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libtool (2.4.6-2.1) ...
Setting up libibverbs1:armhf (17.1-1) ...
Setting up libk5crypto3:armhf (1.16-2) ...
Setting up po-debconf (1.0.20) ...
Setting up libhwloc-dev:armhf (1.11.10-1+rpi1) ...
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Setting up libpmix2:armhf (2.1.1~rc1-2) ...
Setting up libclc-amdgcn (0.2.0+git20171106-1) ...
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Setting up libkrb5-3:armhf (1.16-2) ...
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Setting up libopenmpi3:armhf (3.0.1-9+rpi1) ...
Setting up libclc-r600 (0.2.0+git20171106-1) ...
Setting up libgssapi-krb5-2:armhf (1.16-2) ...
Setting up openssh-client (1:7.7p1-2) ...
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Setting up libhmsbeagle1v5 (2.1.2+git20180307-1) ...
Setting up openmpi-bin (3.0.1-9+rpi1) ...
update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode
update-alternatives: error: no alternatives for mpi
update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode
Setting up libhmsbeagle-dev (2.1.2+git20180307-1) ...
Setting up libopenmpi-dev:armhf (3.0.1-9+rpi1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/openmpi/include to provide /usr/include/arm-linux-gnueabihf/mpi (mpi-arm-linux-gnueabihf) in auto mode
Setting up mpi-default-dev (1.12+rpi1) ...
Setting up dh-autoreconf (17) ...
Setting up dh-strip-nondeterminism (0.041-1) ...
Setting up debhelper (11.2.1) ...
Setting up sbuild-build-depends-mrbayes-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.27-3+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.2-armmp armhf (armv7l)
Toolchain package versions: binutils_2.30-15+rpi1 dpkg-dev_1.19.0.5 g++-7_7.3.0-12 gcc-7_7.3.0-12 libc6-dev_2.27-3+rpi1 libstdc++-7-dev_7.3.0-12 libstdc++6_8-20180414-1+rpi1 linux-libc-dev_4.15.17-1+rpi1
Package versions: adduser_3.117 apt_1.6.1 autoconf_2.69-11 automake_1:1.15.1-3.1 autopoint_0.19.8.1-6 autotools-dev_20180224.1 base-files_10.1+rpi1 base-passwd_3.5.45 bash_4.4.18-2+b1 binutils_2.30-15+rpi1 binutils-arm-linux-gnueabihf_2.30-15+rpi1 binutils-common_2.30-15+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.31.1-0.5 build-essential_12.4+b1 bzip2_1.0.6-8.1 ca-certificates_20170717 coreutils_8.28-1 cpio_2.12+dfsg-6 cpp_4:7.2.0-1d1 cpp-7_7.3.0-12 dash_0.5.8-2.10 dbus_1.12.6-2 dbus-user-session_1.12.6-2 debconf_1.5.66 debhelper_11.2.1 debianutils_4.8.4 dh-autoreconf_17 dh-strip-nondeterminism_0.041-1 diffutils_1:3.6-1 dirmngr_2.2.5-1 dmsetup_2:1.02.145-4.1 dpkg_1.19.0.5 dpkg-dev_1.19.0.5 e2fslibs_1.44.1-2 e2fsprogs_1.44.1-2 e2fsprogs-l10n_1.44.1-2 fakeroot_1.22-2 fdisk_2.31.1-0.5 file_1:5.32-2 findutils_4.6.0+git+20171230-2 g++_4:7.2.0-1d1 g++-7_7.3.0-12 gcc_4:7.2.0-1d1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.4-2+rpi1 gcc-5-base_5.5.0-8 gcc-6-base_6.4.0-12+rpi1 gcc-7_7.3.0-12 gcc-7-base_7.3.0-12 gcc-8-base_8-20180414-1+rpi1 gettext_0.19.8.1-6 gettext-base_0.19.8.1-6 gnupg_2.2.5-1 gnupg-l10n_2.2.5-1 gnupg-utils_2.2.5-1 gpg_2.2.5-1 gpg-agent_2.2.5-1 gpg-wks-client_2.2.5-1 gpg-wks-server_2.2.5-1 gpgconf_2.2.5-1 gpgsm_2.2.5-1 gpgv_2.2.5-1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5 hostname_3.20 ibverbs-providers_17.1-1 inetutils-ping_2:1.9.4-3 init-system-helpers_1.51 initramfs-tools_0.130 initramfs-tools-core_0.130 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-11+rpi1 kmod_25-1 libacl1_2.2.52-3 libapparmor1_2.12-4 libapt-pkg5.0_1.6.1 libarchive-zip-perl_1.60-1 libargon2-0_0~20161029-2 libasan4_7.3.0-12 libassuan0_2.5.1-2 libatomic1_8-20180414-1+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.8.2-1 libaudit1_1:2.8.2-1 libbinutils_2.30-15+rpi1 libblkid1_2.31.1-0.5 libbsd0_0.8.7-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.27-3+rpi1 libc-dev-bin_2.27-3+rpi1 libc6_2.27-3+rpi1 libc6-dev_2.27-3+rpi1 libcap-ng0_0.7.7-3.1+b1 libcap2_1:2.25-1.2 libcc1-0_8-20180414-1+rpi1 libcilkrts5_7.3.0-12 libclang-common-5.0-dev_1:5.0.1-4+rpi1 libclc-amdgcn_0.2.0+git20171106-1 libclc-dev_0.2.0+git20171106-1 libclc-r600_0.2.0+git20171106-1 libcom-err2_1.44.1-2 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.2-1 libcryptsetup4_2:1.7.5-1 libdb5.3_5.3.28-13.1 libdbus-1-3_1.12.6-2 libdebconfclient0_0.243 libdevmapper1.02.1_2:1.02.145-4.1 libdpkg-perl_1.19.0.5 libdrm-amdgpu1_2.4.91-2+rpi1 libdrm-common_2.4.91-2+rpi1 libdrm-freedreno1_2.4.91-2+rpi1 libdrm-nouveau2_2.4.91-2+rpi1 libdrm-radeon1_2.4.91-2+rpi1 libdrm2_2.4.91-2+rpi1 libedit2_3.1-20170329-1 libelf1_0.170-0.4 libevent-2.1-6_2.1.8-stable-4 libevent-core-2.1-6_2.1.8-stable-4 libevent-pthreads-2.1-6_2.1.8-stable-4 libexpat1_2.2.5-3 libext2fs2_1.44.1-2 libfakeroot_1.22-2 libfdisk1_2.31.1-0.5 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.041-1 libgcc-7-dev_7.3.0-12 libgcc1_1:8-20180414-1+rpi1 libgcrypt20_1.8.2-2 libgdbm-compat4_1.14.1-6 libgdbm3_1.8.3-14 libgdbm5_1.14.1-6 libgfortran4_7.3.0-12 libglib2.0-0_2.56.1-2 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.5.18-1 libgomp1_8-20180414-1+rpi1 libgpg-error0_1.29-4 libgssapi-krb5-2_1.16-2 libhmsbeagle-dev_2.1.2+git20180307-1 libhmsbeagle1v5_2.1.2+git20180307-1 libhogweed4_3.4-1 libhwloc-dev_1.11.10-1+rpi1 libhwloc-plugins_1.11.10-1+rpi1 libhwloc5_1.11.10-1+rpi1 libibverbs-dev_17.1-1 libibverbs1_17.1-1 libicu57_57.1-9 libidn11_1.33-2.2 libidn2-0_2.0.4-1.1 libip4tc0_1.6.2-1 libisl15_0.18-4 libjson-c3_0.12.1-1.3 libk5crypto3_1.16-2 libkeyutils1_1.5.9-9.2 libklibc_2.0.4-11+rpi1 libkmod2_25-1 libkrb5-3_1.16-2 libkrb5support0_1.16-2 libksba8_1.3.5-2 libldap-2.4-2_2.4.45+dfsg-1 libldap-common_2.4.45+dfsg-1 libllvm5.0_1:5.0.1-4+rpi1 liblocale-gettext-perl_1.07-3+b2 libltdl-dev_2.4.6-2.1 libltdl7_2.4.6-2.1 liblz4-1_1.8.1.2-1+rpi1 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.32-2 libmagic1_1:5.32-2 libmount1_2.31.1-0.5 libmpc3_1.1.0-1 libmpfr6_4.0.1-1 libncurses5_6.1-1 libncursesw5_6.1-1 libnettle6_3.4-1 libnl-3-200_3.2.27-2 libnl-route-3-200_3.2.27-2 libnpth0_1.5-3 libnss-systemd_238-4 libopenmpi-dev_3.0.1-9+rpi1 libopenmpi3_3.0.1-9+rpi1 libp11-kit0_0.23.10-2 libpam-modules_1.1.8-3.7 libpam-modules-bin_1.1.8-3.7 libpam-runtime_1.1.8-3.7 libpam-systemd_238-4 libpam0g_1.1.8-3.7 libpciaccess0_0.14-1 libpcre3_2:8.39-9 libperl5.26_5.26.2-2 libpipeline1_1.5.0-1 libplymouth4_0.9.3-2 libpmix2_2.1.1~rc1-2 libpng16-16_1.6.34-1 libprocps6_2:3.3.14-1 libreadline-dev_7.0-3 libreadline7_7.0-3 libsasl2-2_2.1.27~101-g0780600+dfsg-3.1 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3.1 libseccomp2_2.3.3-1 libselinux1_2.7-2 libsemanage-common_2.7-2 libsemanage1_2.7-2 libsensors4_1:3.4.0-4+b1 libsepol1_2.7-1 libsigsegv2_2.12-2 libsmartcols1_2.31.1-0.5 libsqlite3-0_3.23.1-1 libss2_1.44.1-2 libssl1.0.2_1.0.2o-1 libssl1.1_1.1.0h-2 libstdc++-7-dev_7.3.0-12 libstdc++6_8-20180414-1+rpi1 libsystemd0_238-4 libtasn1-6_4.13-2 libtext-charwidth-perl_0.04-7.1 libtext-iconv-perl_1.7-5+b9 libtext-wrapi18n-perl_0.06-7.1 libtimedate-perl_2.3000-2 libtinfo-dev_6.1-1 libtinfo5_6.1-1 libtool_2.4.6-2.1 libubsan0_7.3.0-12 libudev1_238-4 libunistring2_0.9.8-1 libuuid1_2.31.1-0.5 libxml2_2.9.4+dfsg1-6.1 libzstd1_1.3.3+dfsg-1+rpi1 linux-base_4.5 linux-libc-dev_4.15.17-1+rpi1 login_1:4.5-1 lsb-base_9.20170808+rpi1 m4_1.4.18-1 make_4.1-9.1 makedev_2.3.1-93 man-db_2.8.3-2 mawk_1.3.3-17 mesa-opencl-icd_17.3.9-1 mount_2.31.1-0.5 mpi-default-dev_1.12+rpi1 multiarch-support_2.27-3+rpi1 nano_2.9.5-1 ncurses-base_6.1-1 ncurses-bin_6.1-1 netbase_5.4 ocl-icd-libopencl1_2.2.12-1 openmpi-bin_3.0.1-9+rpi1 openmpi-common_3.0.1-9+rpi1 openssh-client_1:7.7p1-2 openssl_1.1.0h-2 passwd_1:4.5-1 patch_2.7.6-2 perl_5.26.2-2 perl-base_5.26.2-2 perl-modules-5.26_5.26.2-2 pinentry-curses_1.1.0-1 plymouth_0.9.3-2 po-debconf_1.0.20 procps_2:3.3.14-1 raspbian-archive-keyring_20120528.2 readline-common_7.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-mrbayes-dummy_0.invalid.0 sed_4.4-2 sensible-utils_0.0.12 systemd_238-4 systemd-sysv_238-4 sysvinit-utils_2.88dsf-59.10 tar_1.29b-2 tzdata_2018d-1 udev_238-4 util-linux_2.31.1-0.5 xz-utils_5.2.2-1.3 zlib1g_1:1.2.8.dfsg-5
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Fri Jul 21 04:39:37 2017 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tillea@rki.de"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./mrbayes_3.2.6+dfsg-2.dsc
dpkg-source: info: extracting mrbayes in /<<BUILDDIR>>/mrbayes-3.2.6+dfsg
dpkg-source: info: unpacking mrbayes_3.2.6+dfsg.orig.tar.xz
dpkg-source: info: unpacking mrbayes_3.2.6+dfsg-2.debian.tar.xz
dpkg-source: info: applying as-needed.patch
dpkg-source: info: applying ldlibs.patch
Check disc space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 3.2.6+dfsg-2+b5
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=root
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-4d13d72e-0ca9-4f3c-af96-0ffae00d2bac
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package mrbayes
dpkg-buildpackage: info: source version 3.2.6+dfsg-2+b5
dpkg-buildpackage: info: source distribution buster-staging
dpkg-source --before-build mrbayes-3.2.6+dfsg
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --sourcedirectory=src
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<BUILDDIR>>/mrbayes-3.2.6+dfsg'
( cd src ; /usr/bin/make -f Makefile.in distclean )
make[2]: Entering directory '/<<BUILDDIR>>/mrbayes-3.2.6+dfsg/src'
rm -f *.o *~ mb
rm -rf Makefile config.log config.status config.h *.cache
make[2]: Leaving directory '/<<BUILDDIR>>/mrbayes-3.2.6+dfsg/src'
rm -f src/configure
rm -f mb mb-mpi src/mb
make[1]: Leaving directory '/<<BUILDDIR>>/mrbayes-3.2.6+dfsg'
dh_clean -O--sourcedirectory=src
debian/rules build-arch
dh build-arch --sourcedirectory=src
dh_update_autotools_config -a -O--sourcedirectory=src
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<BUILDDIR>>/mrbayes-3.2.6+dfsg'
#Configure for MPI at first
( cd src ; autoconf )
dh_auto_configure -- --with-beagle=/usr --enable-mpi=yes --enable-debug=yes
cd src && ./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --libexecdir=\${prefix}/lib/arm-linux-gnueabihf --disable-maintainer-mode --disable-dependency-tracking --with-beagle=/usr --enable-mpi=yes --enable-debug=yes
configure: WARNING: unrecognized options: --disable-silent-rules, --disable-maintainer-mode, --disable-dependency-tracking
configure: NOTICE: Because the variable $CFLAGS is defined in your shell, the
default MrBayes flags will be overridden. To ensure optimal performance, please check
that your $CFLAGS variable is set correctly. Alternatively, unset the $CFLAGS
variable in your shell in order to use the default MrBayes compiler options.
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for exp in -lm... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking for mpicc... yes
checking for SSE support... no
checking for /usr/include/libhmsbeagle/libhmsbeagle/beagle.h... no
checking for /usr/include/libhmsbeagle-1/libhmsbeagle/beagle.h... yes
checking for /usr/include/libhmsbeagle/libhmsbeagle/platform.h... no
checking for /usr/include/libhmsbeagle-1/libhmsbeagle/platform.h... yes
checking for /usr/lib... yes
checking for readline in -lreadline... yes
checking for rl_completion_matches function... yes
checking for 32 or 64 bits cpu... 32
configure: creating ./config.status
config.status: creating Makefile
config.status: creating config.h
configure: WARNING: unrecognized options: --disable-silent-rules, --disable-maintainer-mode, --disable-dependency-tracking
make[1]: Leaving directory '/<<BUILDDIR>>/mrbayes-3.2.6+dfsg'
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<BUILDDIR>>/mrbayes-3.2.6+dfsg'
# build mb-mpi (from initial config)
LIBS="-Wl,--as-needed" dh_auto_build
cd src && make -j1
make[2]: Entering directory '/<<BUILDDIR>>/mrbayes-3.2.6+dfsg/src'
mpicc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bayes.o bayes.c
mpicc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o command.o command.c
mpicc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o model.o model.c
mpicc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mcmc.o mcmc.c
mpicc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o likelihood.o likelihood.c
mpicc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o proposal.o proposal.c
mpicc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sumpt.o sumpt.c
sumpt.c: In function 'OpenSumtFiles':
sumpt.c:7093:40: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (pFilename, "%s.tree%d.parts", sumtParams.sumtOutfile, i+1);
^~~~~
sumpt.c:7093:37: note: directive argument in the range [1, 2147483647]
sprintf (pFilename, "%s.tree%d.parts", sumtParams.sumtOutfile, i+1);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:862:0,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 13 and 141 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7094:40: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (sFilename, "%s.tree%d.tstat", sumtParams.sumtOutfile, i+1);
^~~~~
sumpt.c:7094:37: note: directive argument in the range [1, 2147483647]
sprintf (sFilename, "%s.tree%d.tstat", sumtParams.sumtOutfile, i+1);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:862:0,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 13 and 141 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7095:40: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (vFilename, "%s.tree%d.vstat", sumtParams.sumtOutfile, i+1);
^~~~~
sumpt.c:7095:37: note: directive argument in the range [1, 2147483647]
sprintf (vFilename, "%s.tree%d.vstat", sumtParams.sumtOutfile, i+1);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:862:0,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 13 and 141 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7096:40: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (cFilename, "%s.tree%d.con.tre", sumtParams.sumtOutfile, i+1);
^~~~~
sumpt.c:7096:37: note: directive argument in the range [1, 2147483647]
sprintf (cFilename, "%s.tree%d.con.tre", sumtParams.sumtOutfile, i+1);
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:862:0,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 15 and 143 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7097:40: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (tFilename, "%s.tree%d.trprobs", sumtParams.sumtOutfile, i+1);
^~~~~
sumpt.c:7097:37: note: directive argument in the range [1, 2147483647]
sprintf (tFilename, "%s.tree%d.trprobs", sumtParams.sumtOutfile, i+1);
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:862:0,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 15 and 143 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7101:40: warning: '.parts' directive writing 6 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (pFilename, "%s.parts", sumtParams.sumtOutfile);
^~~~~~
In file included from /usr/include/stdio.h:862:0,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 7 and 126 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7102:40: warning: '.tstat' directive writing 6 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (sFilename, "%s.tstat", sumtParams.sumtOutfile);
^~~~~~
In file included from /usr/include/stdio.h:862:0,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 7 and 126 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7103:40: warning: '.vstat' directive writing 6 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (vFilename, "%s.vstat", sumtParams.sumtOutfile);
^~~~~~
In file included from /usr/include/stdio.h:862:0,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 7 and 126 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7104:40: warning: '.con.tre' directive writing 8 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (cFilename, "%s.con.tre", sumtParams.sumtOutfile);
^~~~~~~~
In file included from /usr/include/stdio.h:862:0,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 9 and 128 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7105:40: warning: '.trprobs' directive writing 8 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (tFilename, "%s.trprobs", sumtParams.sumtOutfile);
^~~~~~~~
In file included from /usr/include/stdio.h:862:0,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 9 and 128 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7157:32: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (pFilename, "%s.tree%d.parts", sumtParams.sumtOutfile, treeNo+1);
^~~~~
In file included from /usr/include/stdio.h:862:0,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 13 and 142 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7158:32: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (sFilename, "%s.tree%d.tstat", sumtParams.sumtOutfile, treeNo+1);
^~~~~
In file included from /usr/include/stdio.h:862:0,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 13 and 142 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7159:32: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (vFilename, "%s.tree%d.vstat", sumtParams.sumtOutfile, treeNo+1);
^~~~~
In file included from /usr/include/stdio.h:862:0,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 13 and 142 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7160:32: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (cFilename, "%s.tree%d.con.tre", sumtParams.sumtOutfile, treeNo+1);
^~~~~
In file included from /usr/include/stdio.h:862:0,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 15 and 144 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7161:32: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (tFilename, "%s.tree%d.trprobs", sumtParams.sumtOutfile, treeNo+1);
^~~~~
In file included from /usr/include/stdio.h:862:0,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 15 and 144 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7165:32: warning: '.parts' directive writing 6 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (pFilename, "%s.parts", sumtParams.sumtOutfile);
^~~~~~
In file included from /usr/include/stdio.h:862:0,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 7 and 126 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7166:32: warning: '.tstat' directive writing 6 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (sFilename, "%s.tstat", sumtParams.sumtOutfile);
^~~~~~
In file included from /usr/include/stdio.h:862:0,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 7 and 126 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7167:32: warning: '.vstat' directive writing 6 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (vFilename, "%s.vstat", sumtParams.sumtOutfile);
^~~~~~
In file included from /usr/include/stdio.h:862:0,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 7 and 126 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7168:32: warning: '.con.tre' directive writing 8 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (cFilename, "%s.con.tre", sumtParams.sumtOutfile);
^~~~~~~~
In file included from /usr/include/stdio.h:862:0,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 9 and 128 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7169:32: warning: '.trprobs' directive writing 8 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (tFilename, "%s.trprobs", sumtParams.sumtOutfile);
^~~~~~~~
In file included from /usr/include/stdio.h:862:0,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 9 and 128 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c: In function 'PrintBrlensToFile':
sumpt.c:7255:29: warning: '%s' directive writing up to 119 bytes into a region of size 100 [-Wformat-overflow=]
sprintf (filename, "%s.tree%d.brlens", sumtParams.sumtOutfile, treeNo+1);
^~ ~~~~~~~~~~
In file included from /usr/include/stdio.h:862:0,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 14 and 143 bytes into a destination of size 100
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7257:29: warning: '%s' directive writing up to 119 bytes into a region of size 100 [-Wformat-overflow=]
sprintf (filename, "%s.brlens", sumtParams.sumtOutfile);
^~ ~~~~~~~~~~
In file included from /usr/include/stdio.h:862:0,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 8 and 127 bytes into a destination of size 100
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mpicc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o utils.o utils.c
mpicc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mbbeagle.o mbbeagle.c
mpicc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o best.o best.c
mpicc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -o mb bayes.o command.o model.o mcmc.o likelihood.o proposal.o sumpt.o utils.o mbbeagle.o best.o -Wl,-z,relro -L/usr/lib -lhmsbeagle -lreadline -lm
make[2]: Leaving directory '/<<BUILDDIR>>/mrbayes-3.2.6+dfsg/src'
mv src/mb ./mb-mpi
# Now - build mb
( cd src ; make clean )
make[2]: Entering directory '/<<BUILDDIR>>/mrbayes-3.2.6+dfsg/src'
rm -f *.o *~ mb
make[2]: Leaving directory '/<<BUILDDIR>>/mrbayes-3.2.6+dfsg/src'
dh_auto_configure -- --with-beagle=/usr --enable-mpi=no --enable-debug=yes
cd src && ./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --libexecdir=\${prefix}/lib/arm-linux-gnueabihf --disable-maintainer-mode --disable-dependency-tracking --with-beagle=/usr --enable-mpi=no --enable-debug=yes
configure: WARNING: unrecognized options: --disable-silent-rules, --disable-maintainer-mode, --disable-dependency-tracking
configure: NOTICE: Because the variable $CFLAGS is defined in your shell, the
default MrBayes flags will be overridden. To ensure optimal performance, please check
that your $CFLAGS variable is set correctly. Alternatively, unset the $CFLAGS
variable in your shell in order to use the default MrBayes compiler options.
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for exp in -lm... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking for SSE support... no
checking for /usr/include/libhmsbeagle/libhmsbeagle/beagle.h... no
checking for /usr/include/libhmsbeagle-1/libhmsbeagle/beagle.h... yes
checking for /usr/include/libhmsbeagle/libhmsbeagle/platform.h... no
checking for /usr/include/libhmsbeagle-1/libhmsbeagle/platform.h... yes
checking for /usr/lib... yes
checking for readline in -lreadline... yes
checking for rl_completion_matches function... yes
checking for 32 or 64 bits cpu... 32
configure: creating ./config.status
config.status: creating Makefile
config.status: creating config.h
configure: WARNING: unrecognized options: --disable-silent-rules, --disable-maintainer-mode, --disable-dependency-tracking
LIBS="-Wl,--as-needed" dh_auto_build
cd src && make -j1
make[2]: Entering directory '/<<BUILDDIR>>/mrbayes-3.2.6+dfsg/src'
gcc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bayes.o bayes.c
gcc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o command.o command.c
gcc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o model.o model.c
gcc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mcmc.o mcmc.c
gcc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o likelihood.o likelihood.c
gcc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o proposal.o proposal.c
gcc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sumpt.o sumpt.c
sumpt.c: In function 'OpenSumtFiles':
sumpt.c:7093:40: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (pFilename, "%s.tree%d.parts", sumtParams.sumtOutfile, i+1);
^~~~~
sumpt.c:7093:37: note: directive argument in the range [1, 2147483647]
sprintf (pFilename, "%s.tree%d.parts", sumtParams.sumtOutfile, i+1);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:862:0,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 13 and 141 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7094:40: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (sFilename, "%s.tree%d.tstat", sumtParams.sumtOutfile, i+1);
^~~~~
sumpt.c:7094:37: note: directive argument in the range [1, 2147483647]
sprintf (sFilename, "%s.tree%d.tstat", sumtParams.sumtOutfile, i+1);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:862:0,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 13 and 141 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7095:40: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (vFilename, "%s.tree%d.vstat", sumtParams.sumtOutfile, i+1);
^~~~~
sumpt.c:7095:37: note: directive argument in the range [1, 2147483647]
sprintf (vFilename, "%s.tree%d.vstat", sumtParams.sumtOutfile, i+1);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:862:0,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 13 and 141 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7096:40: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (cFilename, "%s.tree%d.con.tre", sumtParams.sumtOutfile, i+1);
^~~~~
sumpt.c:7096:37: note: directive argument in the range [1, 2147483647]
sprintf (cFilename, "%s.tree%d.con.tre", sumtParams.sumtOutfile, i+1);
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:862:0,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 15 and 143 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7097:40: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (tFilename, "%s.tree%d.trprobs", sumtParams.sumtOutfile, i+1);
^~~~~
sumpt.c:7097:37: note: directive argument in the range [1, 2147483647]
sprintf (tFilename, "%s.tree%d.trprobs", sumtParams.sumtOutfile, i+1);
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:862:0,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 15 and 143 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7101:40: warning: '.parts' directive writing 6 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (pFilename, "%s.parts", sumtParams.sumtOutfile);
^~~~~~
In file included from /usr/include/stdio.h:862:0,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 7 and 126 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7102:40: warning: '.tstat' directive writing 6 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (sFilename, "%s.tstat", sumtParams.sumtOutfile);
^~~~~~
In file included from /usr/include/stdio.h:862:0,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 7 and 126 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7103:40: warning: '.vstat' directive writing 6 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (vFilename, "%s.vstat", sumtParams.sumtOutfile);
^~~~~~
In file included from /usr/include/stdio.h:862:0,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 7 and 126 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7104:40: warning: '.con.tre' directive writing 8 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (cFilename, "%s.con.tre", sumtParams.sumtOutfile);
^~~~~~~~
In file included from /usr/include/stdio.h:862:0,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 9 and 128 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7105:40: warning: '.trprobs' directive writing 8 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (tFilename, "%s.trprobs", sumtParams.sumtOutfile);
^~~~~~~~
In file included from /usr/include/stdio.h:862:0,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 9 and 128 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7157:32: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (pFilename, "%s.tree%d.parts", sumtParams.sumtOutfile, treeNo+1);
^~~~~
In file included from /usr/include/stdio.h:862:0,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 13 and 142 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7158:32: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (sFilename, "%s.tree%d.tstat", sumtParams.sumtOutfile, treeNo+1);
^~~~~
In file included from /usr/include/stdio.h:862:0,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 13 and 142 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7159:32: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (vFilename, "%s.tree%d.vstat", sumtParams.sumtOutfile, treeNo+1);
^~~~~
In file included from /usr/include/stdio.h:862:0,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 13 and 142 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7160:32: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (cFilename, "%s.tree%d.con.tre", sumtParams.sumtOutfile, treeNo+1);
^~~~~
In file included from /usr/include/stdio.h:862:0,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 15 and 144 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7161:32: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (tFilename, "%s.tree%d.trprobs", sumtParams.sumtOutfile, treeNo+1);
^~~~~
In file included from /usr/include/stdio.h:862:0,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 15 and 144 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7165:32: warning: '.parts' directive writing 6 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (pFilename, "%s.parts", sumtParams.sumtOutfile);
^~~~~~
In file included from /usr/include/stdio.h:862:0,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 7 and 126 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7166:32: warning: '.tstat' directive writing 6 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (sFilename, "%s.tstat", sumtParams.sumtOutfile);
^~~~~~
In file included from /usr/include/stdio.h:862:0,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 7 and 126 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7167:32: warning: '.vstat' directive writing 6 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (vFilename, "%s.vstat", sumtParams.sumtOutfile);
^~~~~~
In file included from /usr/include/stdio.h:862:0,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 7 and 126 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7168:32: warning: '.con.tre' directive writing 8 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (cFilename, "%s.con.tre", sumtParams.sumtOutfile);
^~~~~~~~
In file included from /usr/include/stdio.h:862:0,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 9 and 128 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7169:32: warning: '.trprobs' directive writing 8 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
sprintf (tFilename, "%s.trprobs", sumtParams.sumtOutfile);
^~~~~~~~
In file included from /usr/include/stdio.h:862:0,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 9 and 128 bytes into a destination of size 120
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c: In function 'PrintBrlensToFile':
sumpt.c:7255:29: warning: '%s' directive writing up to 119 bytes into a region of size 100 [-Wformat-overflow=]
sprintf (filename, "%s.tree%d.brlens", sumtParams.sumtOutfile, treeNo+1);
^~ ~~~~~~~~~~
In file included from /usr/include/stdio.h:862:0,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 14 and 143 bytes into a destination of size 100
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sumpt.c:7257:29: warning: '%s' directive writing up to 119 bytes into a region of size 100 [-Wformat-overflow=]
sprintf (filename, "%s.brlens", sumtParams.sumtOutfile);
^~ ~~~~~~~~~~
In file included from /usr/include/stdio.h:862:0,
from bayes.h:10,
from sumpt.c:37:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 8 and 127 bytes into a destination of size 100
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o utils.o utils.c
gcc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mbbeagle.o mbbeagle.c
gcc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o best.o best.c
gcc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -o mb bayes.o command.o model.o mcmc.o likelihood.o proposal.o sumpt.o utils.o mbbeagle.o best.o -Wl,-z,relro -L/usr/lib -lhmsbeagle -lreadline -lm
make[2]: Leaving directory '/<<BUILDDIR>>/mrbayes-3.2.6+dfsg/src'
mv src/mb .
make[1]: Leaving directory '/<<BUILDDIR>>/mrbayes-3.2.6+dfsg'
dh_auto_test -a -O--sourcedirectory=src
fakeroot debian/rules binary-arch
dh binary-arch --sourcedirectory=src
dh_testroot -a -O--sourcedirectory=src
dh_prep -a -O--sourcedirectory=src
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<BUILDDIR>>/mrbayes-3.2.6+dfsg'
echo "Do not try to install to /usr/local/bin"
Do not try to install to /usr/local/bin
make[1]: Leaving directory '/<<BUILDDIR>>/mrbayes-3.2.6+dfsg'
dh_install -a -O--sourcedirectory=src
dh_installdocs -a -O--sourcedirectory=src
dh_installchangelogs -a -O--sourcedirectory=src
dh_installman -a -O--sourcedirectory=src
dh_perl -a -O--sourcedirectory=src
dh_link -a -O--sourcedirectory=src
dh_strip_nondeterminism -a -O--sourcedirectory=src
debian/rules override_dh_compress
make[1]: Entering directory '/<<BUILDDIR>>/mrbayes-3.2.6+dfsg'
dh_compress --exclude=.pdf
make[1]: Leaving directory '/<<BUILDDIR>>/mrbayes-3.2.6+dfsg'
dh_fixperms -a -O--sourcedirectory=src
dh_missing -a -O--sourcedirectory=src
dh_strip -a -O--sourcedirectory=src
dh_makeshlibs -a -O--sourcedirectory=src
dh_shlibdeps -a -O--sourcedirectory=src
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrbayes/usr/bin/mb was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrbayes-mpi/usr/lib/mrbayes-mpi/mb-mpi was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
dh_installdeb -a -O--sourcedirectory=src
dh_gencontrol -a -O--sourcedirectory=src
dh_md5sums -a -O--sourcedirectory=src
dh_builddeb -a -O--sourcedirectory=src
dpkg-deb: building package 'mrbayes' in '../mrbayes_3.2.6+dfsg-2+b5_armhf.deb'.
dpkg-deb: building package 'mrbayes-mpi-dbgsym' in '../mrbayes-mpi-dbgsym_3.2.6+dfsg-2+b5_armhf.deb'.
dpkg-deb: building package 'mrbayes-mpi' in '../mrbayes-mpi_3.2.6+dfsg-2+b5_armhf.deb'.
dpkg-deb: building package 'mrbayes-dbgsym' in '../mrbayes-dbgsym_3.2.6+dfsg-2+b5_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../mrbayes_3.2.6+dfsg-2+b5_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build mrbayes-3.2.6+dfsg
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2018-05-03T02:45:10Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
mrbayes_3.2.6+dfsg-2+b5_armhf.changes:
--------------------------------------
Format: 1.8
Date: Wed, 19 Jul 2017 23:40:13 -0400
Source: mrbayes (3.2.6+dfsg-2)
Binary: mrbayes mrbayes-mpi mrbayes-doc
Binary-Only: yes
Architecture: armhf
Version: 3.2.6+dfsg-2+b5
Distribution: buster-staging
Urgency: low
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Raspbian wandboard test autobuilder <root@raspbian.org>
Description:
mrbayes - Bayesian Inference of Phylogeny
mrbayes-doc - Bayesian Inference of Phylogeny - manual
mrbayes-mpi - Bayesian Inference of Phylogeny - mpi version
Changes:
mrbayes (3.2.6+dfsg-2+b5) buster-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
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7be5b53277418008fdd8716a4dc59906 579548 science optional mrbayes_3.2.6+dfsg-2+b5_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
mrbayes-dbgsym_3.2.6+dfsg-2+b5_armhf.deb
----------------------------------------
new Debian package, version 2.0.
size 755948 bytes: control archive=544 bytes.
401 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: mrbayes-dbgsym
Source: mrbayes (3.2.6+dfsg-2)
Version: 3.2.6+dfsg-2+b5
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 813
Depends: mrbayes (= 3.2.6+dfsg-2+b5)
Section: debug
Priority: optional
Description: debug symbols for mrbayes
Build-Ids: 27c832e809e780ef72b2395014c24d053f8e07a5
drwxr-xr-x root/root 0 2017-07-20 03:40 ./
drwxr-xr-x root/root 0 2017-07-20 03:40 ./usr/
drwxr-xr-x root/root 0 2017-07-20 03:40 ./usr/lib/
drwxr-xr-x root/root 0 2017-07-20 03:40 ./usr/lib/debug/
drwxr-xr-x root/root 0 2017-07-20 03:40 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2017-07-20 03:40 ./usr/lib/debug/.build-id/27/
-rw-r--r-- root/root 821552 2017-07-20 03:40 ./usr/lib/debug/.build-id/27/c832e809e780ef72b2395014c24d053f8e07a5.debug
drwxr-xr-x root/root 0 2017-07-20 03:40 ./usr/share/
drwxr-xr-x root/root 0 2017-07-20 03:40 ./usr/share/doc/
lrwxrwxrwx root/root 0 2017-07-20 03:40 ./usr/share/doc/mrbayes-dbgsym -> mrbayes
mrbayes-mpi-dbgsym_3.2.6+dfsg-2+b5_armhf.deb
--------------------------------------------
new Debian package, version 2.0.
size 774356 bytes: control archive=548 bytes.
413 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: mrbayes-mpi-dbgsym
Source: mrbayes (3.2.6+dfsg-2)
Version: 3.2.6+dfsg-2+b5
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 833
Depends: mrbayes-mpi (= 3.2.6+dfsg-2+b5)
Section: debug
Priority: optional
Description: debug symbols for mrbayes-mpi
Build-Ids: a518b81ea4bfa2643db02c96bb905928fa82b127
drwxr-xr-x root/root 0 2017-07-20 03:40 ./
drwxr-xr-x root/root 0 2017-07-20 03:40 ./usr/
drwxr-xr-x root/root 0 2017-07-20 03:40 ./usr/lib/
drwxr-xr-x root/root 0 2017-07-20 03:40 ./usr/lib/debug/
drwxr-xr-x root/root 0 2017-07-20 03:40 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2017-07-20 03:40 ./usr/lib/debug/.build-id/a5/
-rw-r--r-- root/root 842344 2017-07-20 03:40 ./usr/lib/debug/.build-id/a5/18b81ea4bfa2643db02c96bb905928fa82b127.debug
drwxr-xr-x root/root 0 2017-07-20 03:40 ./usr/share/
drwxr-xr-x root/root 0 2017-07-20 03:40 ./usr/share/doc/
lrwxrwxrwx root/root 0 2017-07-20 03:40 ./usr/share/doc/mrbayes-mpi-dbgsym -> mrbayes-mpi
mrbayes-mpi_3.2.6+dfsg-2+b5_armhf.deb
-------------------------------------
new Debian package, version 2.0.
size 485940 bytes: control archive=1068 bytes.
1021 bytes, 21 lines control
485 bytes, 7 lines md5sums
Package: mrbayes-mpi
Source: mrbayes (3.2.6+dfsg-2)
Version: 3.2.6+dfsg-2+b5
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1378
Depends: libc6 (>= 2.7), libhmsbeagle1v5, libopenmpi3, libreadline7 (>= 6.0), mpi-default-bin, ssh
Suggests: mpi-default, mrbayes-doc
Section: science
Priority: optional
Homepage: http://mrbayes.csit.fsu.edu/
Description: Bayesian Inference of Phylogeny - mpi version
Bayesian inference of phylogeny is based upon a quantity called the posterior
probability distribution of trees, which is the probability of a tree
conditioned on the observations. The conditioning is accomplished using
Bayes's theorem. The posterior probability distribution of trees is
impossible to calculate analytically; instead, MrBayes uses a simulation
technique called Markov chain Monte Carlo (or MCMC) to approximate the
posterior probabilities of trees.
.
This package offers a binary compiled for parallel computation with MPI.
drwxr-xr-x root/root 0 2017-07-20 03:40 ./
drwxr-xr-x root/root 0 2017-07-20 03:40 ./usr/
drwxr-xr-x root/root 0 2017-07-20 03:40 ./usr/bin/
-rwxr-xr-x root/root 162 2017-07-20 03:40 ./usr/bin/mb-mpi
drwxr-xr-x root/root 0 2017-07-20 03:40 ./usr/lib/
drwxr-xr-x root/root 0 2017-07-20 03:40 ./usr/lib/mrbayes-mpi/
-rwxr-xr-x root/root 1391004 2017-07-20 03:40 ./usr/lib/mrbayes-mpi/mb-mpi
drwxr-xr-x root/root 0 2017-07-20 03:40 ./usr/share/
drwxr-xr-x root/root 0 2017-07-20 03:40 ./usr/share/doc/
drwxr-xr-x root/root 0 2017-07-20 03:40 ./usr/share/doc/mrbayes-mpi/
-rw-r--r-- root/root 348 2017-07-20 03:40 ./usr/share/doc/mrbayes-mpi/README.Debian
-rw-r--r-- root/root 224 2017-07-20 03:40 ./usr/share/doc/mrbayes-mpi/changelog.Debian.armhf.gz
-rw-r--r-- root/root 2027 2017-07-20 03:40 ./usr/share/doc/mrbayes-mpi/changelog.Debian.gz
-rw-r--r-- root/root 1482 2017-07-20 03:40 ./usr/share/doc/mrbayes-mpi/copyright
drwxr-xr-x root/root 0 2017-07-20 03:40 ./usr/share/man/
drwxr-xr-x root/root 0 2017-07-20 03:40 ./usr/share/man/man1/
-rw-r--r-- root/root 226 2017-07-20 03:40 ./usr/share/man/man1/mb-mpi.1.gz
mrbayes_3.2.6+dfsg-2+b5_armhf.deb
---------------------------------
new Debian package, version 2.0.
size 579548 bytes: control archive=1276 bytes.
878 bytes, 19 lines control
1187 bytes, 16 lines md5sums
Package: mrbayes
Source: mrbayes (3.2.6+dfsg-2)
Version: 3.2.6+dfsg-2+b5
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1459
Depends: libc6 (>= 2.7), libhmsbeagle1v5, libreadline7 (>= 6.0)
Suggests: mrbayes-doc
Section: science
Priority: optional
Homepage: http://mrbayes.csit.fsu.edu/
Description: Bayesian Inference of Phylogeny
Bayesian inference of phylogeny is based upon a quantity called the posterior
probability distribution of trees, which is the probability of a tree
conditioned on the observations. The conditioning is accomplished using
Bayes's theorem. The posterior probability distribution of trees is
impossible to calculate analytically; instead, MrBayes uses a simulation
technique called Markov chain Monte Carlo (or MCMC) to approximate the
posterior probabilities of trees.
drwxr-xr-x root/root 0 2017-07-20 03:40 ./
drwxr-xr-x root/root 0 2017-07-20 03:40 ./usr/
drwxr-xr-x root/root 0 2017-07-20 03:40 ./usr/bin/
-rwxr-xr-x root/root 1366388 2017-07-20 03:40 ./usr/bin/mb
drwxr-xr-x root/root 0 2017-07-20 03:40 ./usr/share/
drwxr-xr-x root/root 0 2017-07-20 03:40 ./usr/share/doc/
drwxr-xr-x root/root 0 2017-07-20 03:40 ./usr/share/doc/mrbayes/
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-rw-r--r-- root/root 262 2017-07-20 03:40 ./usr/share/doc/mrbayes/README.test
-rw-r--r-- root/root 224 2017-07-20 03:40 ./usr/share/doc/mrbayes/changelog.Debian.armhf.gz
-rw-r--r-- root/root 2027 2017-07-20 03:40 ./usr/share/doc/mrbayes/changelog.Debian.gz
-rw-r--r-- root/root 1482 2017-07-20 03:40 ./usr/share/doc/mrbayes/copyright
drwxr-xr-x root/root 0 2017-07-20 03:40 ./usr/share/doc/mrbayes/examples/
-rw-r--r-- root/root 3041 2015-04-07 17:23 ./usr/share/doc/mrbayes/examples/avian_ovomucoids.nex.gz
-rw-r--r-- root/root 1689 2015-01-27 12:31 ./usr/share/doc/mrbayes/examples/codon.nex
-rw-r--r-- root/root 15939 2015-01-27 12:31 ./usr/share/doc/mrbayes/examples/cynmix.nex.gz
-rw-r--r-- root/root 8740 2015-01-27 12:31 ./usr/share/doc/mrbayes/examples/finch.nex.gz
-rw-r--r-- root/root 60092 2015-04-07 17:23 ./usr/share/doc/mrbayes/examples/hymfossil.nex.gz
-rw-r--r-- root/root 2932 2015-01-27 12:31 ./usr/share/doc/mrbayes/examples/primates.nex.gz
-rw-r--r-- root/root 2563 2014-11-21 11:58 ./usr/share/doc/mrbayes/examples/replicase.nex.gz
-rw-r--r-- root/root 9885 2015-04-07 17:23 ./usr/share/doc/mrbayes/examples/sceloporus.nex.gz
-rw-r--r-- root/root 405 2017-07-20 03:40 ./usr/share/doc/mrbayes/run-unit-test
drwxr-xr-x root/root 0 2017-07-20 03:40 ./usr/share/man/
drwxr-xr-x root/root 0 2017-07-20 03:40 ./usr/share/man/man1/
-rw-r--r-- root/root 206 2017-07-20 03:40 ./usr/share/man/man1/mb.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 32860
Build-Time: 1262
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 648
Job: mrbayes_3.2.6+dfsg-2
Machine Architecture: armhf
Package: mrbayes
Package-Time: 1963
Source-Version: 3.2.6+dfsg-2
Space: 32860
Status: successful
Version: 3.2.6+dfsg-2+b5
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Finished at 2018-05-03T02:45:10Z
Build needed 00:32:43, 32860k disc space