mrbayes →
3.2.6+dfsg-2+b4 →
armhf → 2018-04-09 10:37:48
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-03
+==============================================================================+
| mrbayes 3.2.6+dfsg-2+b4 (armhf) Mon, 09 Apr 2018 10:35:39 +0000 |
+==============================================================================+
Package: mrbayes
Version: 3.2.6+dfsg-2+b4
Source Version: 3.2.6+dfsg-2
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-6f629b5a-97d7-4d6d-8644-98c5f8bc5e87' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
E: Release file for http://172.17.0.1/private/dists/buster-staging/InRelease is not valid yet (invalid for another 2s). Updates for this repository will not be applied.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'mrbayes' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/mrbayes.git
Please use:
git clone https://anonscm.debian.org/git/debian-med/mrbayes.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 2653 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main mrbayes 3.2.6+dfsg-2 (dsc) [2381 B]
Get:2 http://172.17.0.1/private buster-staging/main mrbayes 3.2.6+dfsg-2 (tar) [2644 kB]
Get:3 http://172.17.0.1/private buster-staging/main mrbayes 3.2.6+dfsg-2 (diff) [6716 B]
Fetched 2653 kB in 0s (7516 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/mrbayes-oDcljX/mrbayes-3.2.6+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/mrbayes-oDcljX' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-DyvZir/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-DyvZir/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-DyvZir/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-DyvZir/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-DyvZir/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-DyvZir/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-DyvZir/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-DyvZir/apt_archive ./ Packages [431 B]
Fetched 2107 B in 1s (2595 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates dbus dbus-user-session e2fsprogs-l10n libexpat1
libnss-systemd libpam-systemd libssl1.1 openssl systemd-sysv
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-DyvZir/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (20.8 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 13952 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 9), libreadline-dev, mpi-default-dev, libhmsbeagle-dev (<< 2.1-1) | libhmsbeagle-dev (>= 2.1-2), autoconf, automake
Filtered Build-Depends: debhelper (>= 9), libreadline-dev, mpi-default-dev, libhmsbeagle-dev (<< 2.1-1) | libhmsbeagle-dev (>= 2.1-2), autoconf, automake
dpkg-deb: building package 'sbuild-build-depends-mrbayes-dummy' in '/<<BUILDDIR>>/resolver-DyvZir/apt_archive/sbuild-build-depends-mrbayes-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-mrbayes-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-DyvZir/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-DyvZir/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-DyvZir/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-DyvZir/apt_archive ./ Sources [546 B]
Get:5 copy:/<<BUILDDIR>>/resolver-DyvZir/apt_archive ./ Packages [624 B]
Fetched 2503 B in 1s (3239 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install mrbayes build dependencies (apt-based resolver)
-------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates dbus dbus-user-session e2fsprogs-l10n libnss-systemd
libpam-systemd libssl1.1 openssl systemd-sysv
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base
ibverbs-providers intltool-debian libarchive-zip-perl libbsd0
libclang-common-5.0-dev libclc-amdgcn libclc-dev libclc-r600 libcroco3
libdrm-amdgpu1 libdrm-freedreno1 libdrm-nouveau2 libdrm-radeon1 libedit2
libelf1 libfile-stripnondeterminism-perl libgfortran4 libglib2.0-0
libhmsbeagle-dev libhmsbeagle1v5 libhwloc-dev libhwloc-plugins libhwloc5
libibverbs-dev libibverbs1 libicu57 libllvm5.0 libltdl-dev libltdl7
libmagic-mgc libmagic1 libnl-3-200 libnl-route-3-200 libopenmpi-dev
libopenmpi2 libpciaccess0 libpipeline1 libreadline-dev libsensors4
libsigsegv2 libtimedate-perl libtinfo-dev libtool libxml2 m4 man-db
mesa-opencl-icd mpi-default-dev ocl-icd-libopencl1 openmpi-common po-debconf
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation dh-make dwz gettext-doc libasprintf-dev libgettextpo-dev groff
libhwloc-contrib-plugins libtool-doc openmpi-doc pciutils readline-doc
lm-sensors gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less
www-browser libmail-box-perl
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs openmpi-bin libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base
ibverbs-providers intltool-debian libarchive-zip-perl libbsd0
libclang-common-5.0-dev libclc-amdgcn libclc-dev libclc-r600 libcroco3
libdrm-amdgpu1 libdrm-freedreno1 libdrm-nouveau2 libdrm-radeon1 libedit2
libelf1 libfile-stripnondeterminism-perl libgfortran4 libglib2.0-0
libhmsbeagle-dev libhmsbeagle1v5 libhwloc-dev libhwloc-plugins libhwloc5
libibverbs-dev libibverbs1 libicu57 libllvm5.0 libltdl-dev libltdl7
libmagic-mgc libmagic1 libnl-3-200 libnl-route-3-200 libopenmpi-dev
libopenmpi2 libpciaccess0 libpipeline1 libreadline-dev libsensors4
libsigsegv2 libtimedate-perl libtinfo-dev libtool libxml2 m4 man-db
mesa-opencl-icd mpi-default-dev ocl-icd-libopencl1 openmpi-common po-debconf
sbuild-build-depends-mrbayes-dummy
0 upgraded, 64 newly installed, 0 to remove and 0 not upgraded.
Need to get 67.7 MB/79.2 MB of archives.
After this operation, 355 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-DyvZir/apt_archive ./ sbuild-build-depends-mrbayes-dummy 0.invalid.0 [916 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-10 [1005 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.5.0-1 [24.6 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.8.2-1 [1145 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-6 [117 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.12-1 [32.2 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:9 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.15.1-3 [736 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-6 [434 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-2 [545 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 17 [16.5 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.60-1 [95.6 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.040-1 [18.4 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 0.040-1 [11.8 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.56.0-4 [2749 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-6 [1218 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.20 [247 kB]
Err:23 http://172.17.0.1/private buster-staging/main armhf debhelper all 11.1.5
404 Not Found [IP: 172.17.0.1 80]
Get:24 http://172.17.0.1/private buster-staging/main armhf libibverbs1 armhf 17.1-1 [38.9 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf ibverbs-providers armhf 17.1-1 [19.3 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf libllvm5.0 armhf 1:5.0.1-4+rpi1 [11.8 MB]
Get:27 http://172.17.0.1/private buster-staging/main armhf libclang-common-5.0-dev armhf 1:5.0.1-4+rpi1 [1279 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf libclc-dev all 0.2.0+git20171106-1 [25.3 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf libclc-amdgcn all 0.2.0+git20171106-1 [20.4 MB]
Get:30 http://172.17.0.1/private buster-staging/main armhf libclc-r600 all 0.2.0+git20171106-1 [15.4 MB]
Get:31 http://172.17.0.1/private buster-staging/main armhf libdrm-amdgpu1 armhf 2.4.91-2+rpi1 [26.9 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf libdrm-freedreno1 armhf 2.4.91-2+rpi1 [25.1 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf libdrm-nouveau2 armhf 2.4.91-2+rpi1 [24.3 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf libdrm-radeon1 armhf 2.4.91-2+rpi1 [28.8 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf libgfortran4 armhf 7.3.0-12 [191 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf mesa-opencl-icd armhf 17.3.7-1 [6451 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf libhmsbeagle1v5 armhf 2.1.2+20171110-1 [89.4 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf libhmsbeagle-dev armhf 2.1.2+20171110-1 [153 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf libltdl-dev armhf 2.4.6-2 [159 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf libhwloc-dev armhf 1.11.9-1+rpi1 [140 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf libpciaccess0 armhf 0.14-1 [51.0 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf libibverbs-dev armhf 17.1-1 [89.8 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf libtinfo-dev armhf 6.1-1 [66.6 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf libreadline-dev armhf 7.0-3 [109 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf libopenmpi-dev armhf 2.1.1-8+rpi1 [1024 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf mpi-default-dev armhf 1.10 [5180 B]
Fetched 66.7 MB in 7s (10.2 MB/s)
W: No sandbox user '_apt' on the system, can not drop privileges
E: Failed to fetch http://172.17.0.1/private/pool/main/d/debhelper/debhelper_11.1.5_all.deb 404 Not Found [IP: 172.17.0.1 80]
E: Unable to fetch some archives, maybe run apt-get update or try with --fix-missing?
apt-get failed.
E: Package installation failed
Not removing build depends: cloned chroot in use
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
E: Package build dependencies not satisfied; skipping
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 0
Build-Time: 0
Distribution: buster-staging
Fail-Stage: install-deps
Host Architecture: armhf
Install-Time: 0
Job: mrbayes_3.2.6+dfsg-2
Machine Architecture: armhf
Package: mrbayes
Package-Time: 0
Source-Version: 3.2.6+dfsg-2
Space: 0
Status: failed
Version: 3.2.6+dfsg-2+b4
--------------------------------------------------------------------------------
Finished at 2018-04-09T10:35:39Z
Build needed 00:00:00, 0k disc space