mrbayes →
3.2.6+dfsg-1 →
armhf → 2016-01-05 06:42:42
sbuild (Debian sbuild) 0.65.2 (24 Mar 2015) on testwandboard
╔══════════════════════════════════════════════════════════════════════════════╗
║ mrbayes 3.2.6+dfsg-1 (armhf) 05 Jan 2016 06:16 ║
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Package: mrbayes
Version: 3.2.6+dfsg-1
Source Version: 3.2.6+dfsg-1
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'build/mrbayes-l_ktyO/mrbayes-3.2.6+dfsg' with '«PKGBUILDDIR»'
I: NOTICE: Log filtering will replace 'build/mrbayes-l_ktyO' with '«BUILDDIR»'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-ab5e53f6-8347-4290-b336-cad98c692c29' with '«CHROOT»'
┌──────────────────────────────────────────────────────────────────────────────┐
│ Update chroot │
└──────────────────────────────────────────────────────────────────────────────┘
Get:1 http://172.17.0.1/private stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private stretch-staging/main Sources [8574 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf Packages [10.6 MB]
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Fetch source files │
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Check APT
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NOTICE: 'mrbayes' packaging is maintained in the 'Git' version control system at:
git://anonscm.debian.org/debian-med/mrbayes.git
Please use:
git clone git://anonscm.debian.org/debian-med/mrbayes.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 2653 kB of source archives.
Get:1 http://172.17.0.1/private stretch-staging/main mrbayes 3.2.6+dfsg-1 (dsc) [2317 B]
Get:2 http://172.17.0.1/private stretch-staging/main mrbayes 3.2.6+dfsg-1 (tar) [2644 kB]
Get:3 http://172.17.0.1/private stretch-staging/main mrbayes 3.2.6+dfsg-1 (diff) [6192 B]
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Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/«BUILDDIR»/resolver-dDyBYI/apt_archive/sbuild-build-depends-core-dummy.deb'.
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Get:2 file:/«BUILDDIR»/resolver-dDyBYI/apt_archive ./ Release [2119 B]
Get:3 file:/«BUILDDIR»/resolver-dDyBYI/apt_archive ./ Release.gpg [299 B]
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Get:4 file:/«BUILDDIR»/resolver-dDyBYI/apt_archive ./ Sources [188 B]
Get:5 file:/«BUILDDIR»/resolver-dDyBYI/apt_archive ./ Packages [506 B]
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Install core build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
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Building dependency tree...
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The following NEW packages will be installed:
sbuild-build-depends-core-dummy
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Merged Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), libreadline-dev, mpi-default-dev, libhmsbeagle-dev (<< 2.1-1) | libhmsbeagle-dev (>= 2.1-2), autoconf, automake
Filtered Build-Depends: libc6-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), libreadline-dev, mpi-default-dev, libhmsbeagle-dev (<< 2.1-1) | libhmsbeagle-dev (>= 2.1-2), autoconf, automake
dpkg-deb: building package 'sbuild-build-depends-mrbayes-dummy' in '/«BUILDDIR»/resolver-q0B44Y/apt_archive/sbuild-build-depends-mrbayes-dummy.deb'.
OK
Get:1 file:/«BUILDDIR»/resolver-q0B44Y/apt_archive ./ InRelease
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Get:3 file:/«BUILDDIR»/resolver-q0B44Y/apt_archive ./ Release.gpg [299 B]
Get:3 file:/«BUILDDIR»/resolver-q0B44Y/apt_archive ./ Release.gpg [299 B]
Get:4 file:/«BUILDDIR»/resolver-q0B44Y/apt_archive ./ Sources [348 B]
Get:5 file:/«BUILDDIR»/resolver-q0B44Y/apt_archive ./ Packages [604 B]
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Install mrbayes build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
autoconf automake autotools-dev bsdmainutils debhelper
dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian
libarchive-zip-perl libcr0 libcroco3 libffi6
libfile-stripnondeterminism-perl libgfortran3 libglib2.0-0 libhmsbeagle-dev
libhmsbeagle1v5 libhwloc-dev libhwloc5 libibverbs-dev libibverbs1 libicu55
libltdl-dev libltdl7 libmagic1 libopenmpi-dev libopenmpi1.6 libpipeline1
libreadline-dev libreadline6-dev libsigsegv2 libtimedate-perl libtinfo-dev
libunistring0 libxml2 m4 man-db mpi-default-dev openmpi-common po-debconf
Suggested packages:
autoconf-archive gnu-standards autoconf-doc libtool wamerican | wordlist
whois vacation dh-make gettext-doc autopoint libasprintf-dev
libgettextpo-dev groff blcr-dkms libhwloc-contrib-plugins libtool-doc
readline-doc less www-browser libmail-box-perl
Recommended packages:
curl | wget | lynx-cur libglib2.0-data shared-mime-info xdg-user-dirs
libhwloc-plugins libtool xml-core libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autotools-dev bsdmainutils debhelper
dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian
libarchive-zip-perl libcr0 libcroco3 libffi6
libfile-stripnondeterminism-perl libgfortran3 libglib2.0-0 libhmsbeagle-dev
libhmsbeagle1v5 libhwloc-dev libhwloc5 libibverbs-dev libibverbs1 libicu55
libltdl-dev libltdl7 libmagic1 libopenmpi-dev libopenmpi1.6 libpipeline1
libreadline-dev libreadline6-dev libsigsegv2 libtimedate-perl libtinfo-dev
libunistring0 libxml2 m4 man-db mpi-default-dev openmpi-common po-debconf
sbuild-build-depends-mrbayes-dummy
0 upgraded, 44 newly installed, 0 to remove and 3 not upgraded.
Need to get 20.7 MB/20.7 MB of archives.
After this operation, 74.9 MB of additional disk space will be used.
Get:1 file:/«BUILDDIR»/resolver-q0B44Y/apt_archive ./ sbuild-build-depends-mrbayes-dummy 0.invalid.0 [866 B]
Get:2 http://172.17.0.1/private stretch-staging/main armhf groff-base armhf 1.22.3-4 [1084 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf bsdmainutils armhf 9.0.6 [177 kB]
Get:4 http://172.17.0.1/private stretch-staging/main armhf libpipeline1 armhf 1.4.1-1 [23.9 kB]
Get:5 http://172.17.0.1/private stretch-staging/main armhf man-db armhf 2.7.5-1 [975 kB]
Get:6 http://172.17.0.1/private stretch-staging/main armhf libltdl7 armhf 2.4.2-1.11 [42.5 kB]
Get:7 http://172.17.0.1/private stretch-staging/main armhf libsigsegv2 armhf 2.10-4 [28.2 kB]
Get:8 http://172.17.0.1/private stretch-staging/main armhf libunistring0 armhf 0.9.3-5.2 [253 kB]
Get:9 http://172.17.0.1/private stretch-staging/main armhf libmagic1 armhf 1:5.25-2 [250 kB]
Get:10 http://172.17.0.1/private stretch-staging/main armhf file armhf 1:5.25-2 [61.2 kB]
Get:11 http://172.17.0.1/private stretch-staging/main armhf gettext-base armhf 0.19.7-1 [111 kB]
Get:12 http://172.17.0.1/private stretch-staging/main armhf libicu55 armhf 55.1-6 [7379 kB]
Get:13 http://172.17.0.1/private stretch-staging/main armhf libxml2 armhf 2.9.3+dfsg1-1 [800 kB]
Get:14 http://172.17.0.1/private stretch-staging/main armhf m4 armhf 1.4.17-5 [239 kB]
Get:15 http://172.17.0.1/private stretch-staging/main armhf autoconf all 2.69-9 [338 kB]
Get:16 http://172.17.0.1/private stretch-staging/main armhf autotools-dev all 20150820.1 [71.7 kB]
Get:17 http://172.17.0.1/private stretch-staging/main armhf automake all 1:1.15-3 [735 kB]
Get:18 http://172.17.0.1/private stretch-staging/main armhf libffi6 armhf 3.2.1-4 [18.5 kB]
Get:19 http://172.17.0.1/private stretch-staging/main armhf libglib2.0-0 armhf 2.46.2-3 [2482 kB]
Get:20 http://172.17.0.1/private stretch-staging/main armhf libcroco3 armhf 0.6.11-1 [131 kB]
Get:21 http://172.17.0.1/private stretch-staging/main armhf gettext armhf 0.19.7-1 [1417 kB]
Get:22 http://172.17.0.1/private stretch-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:23 http://172.17.0.1/private stretch-staging/main armhf po-debconf all 1.0.18 [248 kB]
Get:24 http://172.17.0.1/private stretch-staging/main armhf libarchive-zip-perl all 1.55-1 [97.4 kB]
Get:25 http://172.17.0.1/private stretch-staging/main armhf libfile-stripnondeterminism-perl all 0.014-1 [10.6 kB]
Get:26 http://172.17.0.1/private stretch-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:27 http://172.17.0.1/private stretch-staging/main armhf dh-strip-nondeterminism all 0.014-1 [7472 B]
Get:28 http://172.17.0.1/private stretch-staging/main armhf debhelper all 9.20151225 [830 kB]
Get:29 http://172.17.0.1/private stretch-staging/main armhf libcr0 armhf 0.8.5-2.2 [30.0 kB]
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Get:34 http://172.17.0.1/private stretch-staging/main armhf libtinfo-dev armhf 6.0+20151024-2 [65.8 kB]
Get:35 http://172.17.0.1/private stretch-staging/main armhf libreadline6-dev armhf 6.3-8+b3 [105 kB]
Get:36 http://172.17.0.1/private stretch-staging/main armhf libreadline-dev armhf 6.3-8+b3 [958 B]
Get:37 http://172.17.0.1/private stretch-staging/main armhf libhwloc5 armhf 1.11.2-2 [80.7 kB]
Get:38 http://172.17.0.1/private stretch-staging/main armhf libhwloc-dev armhf 1.11.2-2 [133 kB]
Get:39 http://172.17.0.1/private stretch-staging/main armhf libibverbs1 armhf 1.1.8-1.1 [28.5 kB]
Get:40 http://172.17.0.1/private stretch-staging/main armhf libibverbs-dev armhf 1.1.8-1.1 [82.6 kB]
Get:41 http://172.17.0.1/private stretch-staging/main armhf libopenmpi1.6 armhf 1.6.5-11+rpi1 [1232 kB]
Get:42 http://172.17.0.1/private stretch-staging/main armhf openmpi-common all 1.6.5-11+rpi1 [111 kB]
Get:43 http://172.17.0.1/private stretch-staging/main armhf libopenmpi-dev armhf 1.6.5-11+rpi1 [447 kB]
Get:44 http://172.17.0.1/private stretch-staging/main armhf mpi-default-dev armhf 1.0.2+nmu2 [3984 B]
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Setting up groff-base (1.22.3-4) ...
Setting up bsdmainutils (9.0.6) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libpipeline1:armhf (1.4.1-1) ...
Setting up man-db (2.7.5-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libltdl7:armhf (2.4.2-1.11) ...
Setting up libsigsegv2:armhf (2.10-4) ...
Setting up libunistring0:armhf (0.9.3-5.2) ...
Setting up libmagic1:armhf (1:5.25-2) ...
Setting up file (1:5.25-2) ...
Setting up gettext-base (0.19.7-1) ...
Setting up libicu55:armhf (55.1-6) ...
Setting up libxml2:armhf (2.9.3+dfsg1-1) ...
Setting up m4 (1.4.17-5) ...
Setting up autoconf (2.69-9) ...
Setting up autotools-dev (20150820.1) ...
Setting up automake (1:1.15-3) ...
update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode
Setting up libffi6:armhf (3.2.1-4) ...
Setting up libglib2.0-0:armhf (2.46.2-3) ...
No schema files found: doing nothing.
Setting up libcroco3:armhf (0.6.11-1) ...
Setting up gettext (0.19.7-1) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up po-debconf (1.0.18) ...
Setting up libarchive-zip-perl (1.55-1) ...
Setting up libfile-stripnondeterminism-perl (0.014-1) ...
Setting up libtimedate-perl (2.3000-2) ...
Setting up libcr0 (0.8.5-2.2) ...
Setting up libgfortran3:armhf (5.3.1-4+rpi1) ...
Setting up libhmsbeagle1v5 (2.1.2+20150609-1.1) ...
Setting up libhmsbeagle-dev (2.1.2+20150609-1.1) ...
Setting up libltdl-dev:armhf (2.4.2-1.11) ...
Setting up libtinfo-dev:armhf (6.0+20151024-2) ...
Setting up libreadline6-dev:armhf (6.3-8+b3) ...
Setting up libreadline-dev:armhf (6.3-8+b3) ...
Setting up libhwloc5:armhf (1.11.2-2) ...
Setting up libhwloc-dev:armhf (1.11.2-2) ...
Setting up libibverbs1 (1.1.8-1.1) ...
Setting up libibverbs-dev (1.1.8-1.1) ...
Setting up libopenmpi1.6 (1.6.5-11+rpi1) ...
Setting up openmpi-common (1.6.5-11+rpi1) ...
Setting up libopenmpi-dev (1.6.5-11+rpi1) ...
update-alternatives: using /usr/lib/openmpi/include to provide /usr/include/mpi (mpi) in auto mode
Setting up mpi-default-dev (1.0.2+nmu2) ...
Setting up debhelper (9.20151225) ...
Setting up sbuild-build-depends-mrbayes-dummy (0.invalid.0) ...
Setting up dh-strip-nondeterminism (0.014-1) ...
Processing triggers for libc-bin (2.21-6) ...
W: No sandbox user '_apt' on the system, can not drop privileges
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build environment │
└──────────────────────────────────────────────────────────────────────────────┘
Kernel: Linux 3.19.0-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.25.90.20151209-1 dpkg-dev_1.18.4 g++-5_5.3.1-4+rpi1 gcc-5_5.3.1-4+rpi1 libc6-dev_2.21-6 libstdc++-5-dev_5.3.1-4+rpi1 libstdc++6_5.3.1-4+rpi1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: adduser_3.113+nmu3 apt_1.1.5 autoconf_2.69-9 automake_1:1.15-3 autotools-dev_20150820.1 base-files_9.4+rpi1 base-passwd_3.5.38 bash_4.3-14 binutils_2.25.90.20151209-1 bsdmainutils_9.0.6 bsdutils_1:2.27.1-1 build-essential_11.7 bzip2_1.0.6-8 coreutils_8.23-4 cpio_2.11+dfsg-4.1 cpp_4:5.3.1-1+rpi1 cpp-5_5.3.1-4+rpi1 dash_0.5.7-4 debconf_1.5.58 debfoster_2.7-2 debhelper_9.20151225 debianutils_4.5.1 dh-strip-nondeterminism_0.014-1 diffutils_1:3.3-3 dmsetup_2:1.02.114-1 dpkg_1.18.4 dpkg-dev_1.18.4 e2fslibs_1.42.13-1 e2fsprogs_1.42.13-1 fakeroot_1.20.2-1 file_1:5.25-2 findutils_4.4.2-10 g++_4:5.3.1-1+rpi1 g++-5_5.3.1-4+rpi1 gcc_4:5.3.1-1+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-3 gcc-4.9-base_4.9.3-10 gcc-5_5.3.1-4+rpi1 gcc-5-base_5.3.1-4+rpi1 gettext_0.19.7-1 gettext-base_0.19.7-1 gnupg_1.4.20-1 gpgv_1.4.20-1 grep_2.22-1 groff-base_1.22.3-4 gzip_1.6-4 hostname_3.16 init_1.24 init-system-helpers_1.24 initramfs-tools_0.120 initscripts_2.88dsf-59.2 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-4+rpi1 kmod_21-1 libacl1_2.2.52-2 libapparmor1_2.10-2+b2 libapt-pkg4.16_1.0.10.2 libapt-pkg5.0_1.1.5 libarchive-zip-perl_1.55-1 libasan2_5.3.1-4+rpi1 libatomic1_5.3.1-4+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.4.5-1 libaudit1_1:2.4.5-1 libblkid1_2.27.1-1 libbz2-1.0_1.0.6-8 libc-bin_2.21-6 libc-dev-bin_2.21-6 libc6_2.21-6 libc6-dev_2.21-6 libcap2_1:2.24-12 libcap2-bin_1:2.24-12 libcc1-0_5.3.1-4+rpi1 libcomerr2_1.42.13-1 libcr0_0.8.5-2.2 libcroco3_0.6.11-1 libcryptsetup4_2:1.6.6-5 libdb5.3_5.3.28-11 libdbus-1-3_1.10.6-1 libdebconfclient0_0.201 libdevmapper1.02.1_2:1.02.114-1 libdpkg-perl_1.18.4 libdrm2_2.4.65-3 libfakeroot_1.20.2-1 libfdisk1_2.27.1-1 libffi6_3.2.1-4 libfile-stripnondeterminism-perl_0.014-1 libgc1c2_1:7.4.2-7.3 libgcc-5-dev_5.3.1-4+rpi1 libgcc1_1:5.3.1-4+rpi1 libgcrypt20_1.6.4-4 libgdbm3_1.8.3-13.1 libgfortran3_5.3.1-4+rpi1 libglib2.0-0_2.46.2-3 libgmp10_2:6.1.0+dfsg-2 libgomp1_5.3.1-4+rpi1 libgpg-error0_1.21-1 libhmsbeagle-dev_2.1.2+20150609-1.1 libhmsbeagle1v5_2.1.2+20150609-1.1 libhwloc-dev_1.11.2-2 libhwloc5_1.11.2-2 libibverbs-dev_1.1.8-1.1 libibverbs1_1.1.8-1.1 libicu55_55.1-6 libisl13_0.14-2 libisl15_0.15-3 libklibc_2.0.4-4+rpi1 libkmod2_21-1 libltdl-dev_2.4.2-1.11 libltdl7_2.4.2-1.11 liblzma5_5.1.1alpha+20120614-2.1 libmagic1_1:5.25-2 libmount1_2.27.1-1 libmpc3_1.0.3-1 libmpfr4_3.1.3-2 libncurses5_6.0+20151024-2 libncursesw5_6.0+20151024-2 libopenmpi-dev_1.6.5-11+rpi1 libopenmpi1.6_1.6.5-11+rpi1 libpam-modules_1.1.8-3.1 libpam-modules-bin_1.1.8-3.1 libpam-runtime_1.1.8-3.1 libpam0g_1.1.8-3.1 libpcre3_2:8.35-8 libperl5.22_5.22.1-3 libpipeline1_1.4.1-1 libplymouth4_0.9.2-3 libpng12-0_1.2.54-1 libprocps4_2:3.3.10-2 libreadline-dev_6.3-8+b3 libreadline6_6.3-8+b3 libreadline6-dev_6.3-8+b3 libseccomp2_2.2.3-2 libselinux1_2.4-3 libsemanage-common_2.4-3 libsemanage1_2.4-3 libsepol1_2.4-2 libsigsegv2_2.10-4 libsmartcols1_2.27.1-1 libss2_1.42.13-1 libstdc++-5-dev_5.3.1-4+rpi1 libstdc++6_5.3.1-4+rpi1 libsystemd0_228-2 libtext-charwidth-perl_0.04-7+b6 libtext-iconv-perl_1.7-5+b7 libtext-wrapi18n-perl_0.06-7.1 libtimedate-perl_2.3000-2 libtinfo-dev_6.0+20151024-2 libtinfo5_6.0+20151024-2 libubsan0_5.3.1-4+rpi1 libudev1_228-2 libunistring0_0.9.3-5.2 libusb-0.1-4_2:0.1.12-27 libustr-1.0-1_1.0.4-5 libuuid1_2.27.1-1 libxml2_2.9.3+dfsg1-1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.2-3.1 lsb-base_4.1+Debian13+rpi1+nmu1 m4_1.4.17-5 make_4.0-8.2 makedev_2.3.1-93 man-db_2.7.5-1 manpages_3.74-1 mawk_1.3.3-17 mount_2.27.1-1 mpi-default-dev_1.0.2+nmu2 multiarch-support_2.21-6 ncurses-base_6.0+20151024-2 ncurses-bin_6.0+20151024-2 openmpi-common_1.6.5-11+rpi1 passwd_1:4.2-3.1 patch_2.7.5-1 perl_5.22.1-3 perl-base_5.22.1-3 perl-modules-5.22_5.22.1-3 plymouth_0.9.2-3 po-debconf_1.0.18 procps_2:3.3.10-2 raspbian-archive-keyring_20120528.2 readline-common_6.3-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-mrbayes-dummy_0.invalid.0 sed_4.2.2-6.1 sensible-utils_0.0.9 startpar_0.59-3 systemd_228-2 systemd-sysv_228-2 sysv-rc_2.88dsf-59.2 sysvinit-utils_2.88dsf-59.2 tar_1.28-2.1 tzdata_2015g-1 udev_228-2 util-linux_2.27.1-1 xz-utils_5.1.1alpha+20120614-2.1 zlib1g_1:1.2.8.dfsg-2+b1
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
└──────────────────────────────────────────────────────────────────────────────┘
Unpack source
─────────────
gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Wed Dec 30 21:43:36 2015 UTC using RSA key ID D1C646D1
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./mrbayes_3.2.6+dfsg-1.dsc
dpkg-source: info: extracting mrbayes in mrbayes-3.2.6+dfsg
dpkg-source: info: unpacking mrbayes_3.2.6+dfsg.orig.tar.xz
dpkg-source: info: unpacking mrbayes_3.2.6+dfsg-1.debian.tar.xz
dpkg-source: info: applying as-needed.patch
dpkg-source: info: applying ldlibs.patch
Check disc space
────────────────
Sufficient free space for build
User Environment
────────────────
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-ab5e53f6-8347-4290-b336-cad98c692c29
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package mrbayes
dpkg-buildpackage: source version 3.2.6+dfsg-1
dpkg-buildpackage: source distribution unstable
dpkg-source --before-build mrbayes-3.2.6+dfsg
dpkg-buildpackage: host architecture armhf
fakeroot debian/rules clean
dh clean --sourcedirectory=src
dh_testdir -O--sourcedirectory=src
debian/rules override_dh_auto_clean
make[1]: Entering directory '/«BUILDDIR»/mrbayes-3.2.6+dfsg'
( cd src ; /usr/bin/make -f Makefile.in distclean )
make[2]: Entering directory '/«BUILDDIR»/mrbayes-3.2.6+dfsg/src'
rm -f *.o *~ mb
rm -rf Makefile config.log config.status config.h *.cache
make[2]: Leaving directory '/«BUILDDIR»/mrbayes-3.2.6+dfsg/src'
rm -f src/configure
rm -f mb mb-mpi src/mb
make[1]: Leaving directory '/«BUILDDIR»/mrbayes-3.2.6+dfsg'
dh_clean -O--sourcedirectory=src
debian/rules build-arch
dh build-arch --sourcedirectory=src
dh_testdir -a -O--sourcedirectory=src
debian/rules override_dh_auto_configure
make[1]: Entering directory '/«BUILDDIR»/mrbayes-3.2.6+dfsg'
#Configure for MPI at first
( cd src ; autoconf )
dh_auto_configure -- --with-beagle=/usr --enable-mpi=yes --enable-debug=yes
./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --libexecdir=\${prefix}/lib/arm-linux-gnueabihf --disable-maintainer-mode --disable-dependency-tracking --with-beagle=/usr --enable-mpi=yes --enable-debug=yes
configure: WARNING: unrecognized options: --disable-silent-rules, --disable-maintainer-mode, --disable-dependency-tracking
configure: NOTICE: Because the variable $CFLAGS is defined in your shell, the
default MrBayes flags will be overridden. To ensure optimal performance, please check
that your $CFLAGS variable is set correctly. Alternatively, unset the $CFLAGS
variable in your shell in order to use the default MrBayes compiler options.
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for exp in -lm... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking for mpicc... yes
checking for SSE support... no
checking for /usr/include/libhmsbeagle/libhmsbeagle/beagle.h... no
checking for /usr/include/libhmsbeagle-1/libhmsbeagle/beagle.h... yes
checking for /usr/include/libhmsbeagle/libhmsbeagle/platform.h... no
checking for /usr/include/libhmsbeagle-1/libhmsbeagle/platform.h... yes
checking for /usr/lib... yes
checking for readline in -lreadline... yes
checking for rl_completion_matches function... yes
checking for 32 or 64 bits cpu... 32
configure: creating ./config.status
config.status: creating Makefile
config.status: creating config.h
configure: WARNING: unrecognized options: --disable-silent-rules, --disable-maintainer-mode, --disable-dependency-tracking
make[1]: Leaving directory '/«BUILDDIR»/mrbayes-3.2.6+dfsg'
debian/rules override_dh_auto_build
make[1]: Entering directory '/«BUILDDIR»/mrbayes-3.2.6+dfsg'
# build mb-mpi (from initial config)
LIBS="-Wl,--as-needed" dh_auto_build
make -j1
make[2]: Entering directory '/«BUILDDIR»/mrbayes-3.2.6+dfsg/src'
mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bayes.o bayes.c
mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o command.o command.c
mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o model.o model.c
mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mcmc.o mcmc.c
mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o likelihood.o likelihood.c
mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o proposal.o proposal.c
mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sumpt.o sumpt.c
mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o utils.o utils.c
mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mbbeagle.o mbbeagle.c
mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o best.o best.c
mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -o mb bayes.o command.o model.o mcmc.o likelihood.o proposal.o sumpt.o utils.o mbbeagle.o best.o -Wl,-z,relro -L/usr/lib -lhmsbeagle -lreadline -lm
make[2]: Leaving directory '/«BUILDDIR»/mrbayes-3.2.6+dfsg/src'
mv src/mb ./mb-mpi
# Now - build mb
( cd src ; make clean )
make[2]: Entering directory '/«BUILDDIR»/mrbayes-3.2.6+dfsg/src'
rm -f *.o *~ mb
make[2]: Leaving directory '/«BUILDDIR»/mrbayes-3.2.6+dfsg/src'
dh_auto_configure -- --with-beagle=/usr --enable-mpi=no --enable-debug=yes
./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --libexecdir=\${prefix}/lib/arm-linux-gnueabihf --disable-maintainer-mode --disable-dependency-tracking --with-beagle=/usr --enable-mpi=no --enable-debug=yes
configure: WARNING: unrecognized options: --disable-silent-rules, --disable-maintainer-mode, --disable-dependency-tracking
configure: NOTICE: Because the variable $CFLAGS is defined in your shell, the
default MrBayes flags will be overridden. To ensure optimal performance, please check
that your $CFLAGS variable is set correctly. Alternatively, unset the $CFLAGS
variable in your shell in order to use the default MrBayes compiler options.
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for exp in -lm... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking for SSE support... no
checking for /usr/include/libhmsbeagle/libhmsbeagle/beagle.h... no
checking for /usr/include/libhmsbeagle-1/libhmsbeagle/beagle.h... yes
checking for /usr/include/libhmsbeagle/libhmsbeagle/platform.h... no
checking for /usr/include/libhmsbeagle-1/libhmsbeagle/platform.h... yes
checking for /usr/lib... yes
checking for readline in -lreadline... yes
checking for rl_completion_matches function... yes
checking for 32 or 64 bits cpu... 32
configure: creating ./config.status
config.status: creating Makefile
config.status: creating config.h
configure: WARNING: unrecognized options: --disable-silent-rules, --disable-maintainer-mode, --disable-dependency-tracking
LIBS="-Wl,--as-needed" dh_auto_build
make -j1
make[2]: Entering directory '/«BUILDDIR»/mrbayes-3.2.6+dfsg/src'
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bayes.o bayes.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o command.o command.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o model.o model.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mcmc.o mcmc.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o likelihood.o likelihood.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o proposal.o proposal.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sumpt.o sumpt.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o utils.o utils.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mbbeagle.o mbbeagle.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o best.o best.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -o mb bayes.o command.o model.o mcmc.o likelihood.o proposal.o sumpt.o utils.o mbbeagle.o best.o -Wl,-z,relro -L/usr/lib -lhmsbeagle -lreadline -lm
make[2]: Leaving directory '/«BUILDDIR»/mrbayes-3.2.6+dfsg/src'
mv src/mb .
make[1]: Leaving directory '/«BUILDDIR»/mrbayes-3.2.6+dfsg'
dh_auto_test -a -O--sourcedirectory=src
fakeroot debian/rules binary-arch
dh binary-arch --sourcedirectory=src
dh_testroot -a -O--sourcedirectory=src
dh_prep -a -O--sourcedirectory=src
debian/rules override_dh_auto_install
make[1]: Entering directory '/«BUILDDIR»/mrbayes-3.2.6+dfsg'
echo "Do not try to install to /usr/local/bin"
Do not try to install to /usr/local/bin
make[1]: Leaving directory '/«BUILDDIR»/mrbayes-3.2.6+dfsg'
dh_install -a -O--sourcedirectory=src
dh_installdocs -a -O--sourcedirectory=src
dh_installchangelogs -a -O--sourcedirectory=src
dh_installman -a -O--sourcedirectory=src
dh_perl -a -O--sourcedirectory=src
dh_link -a -O--sourcedirectory=src
dh_strip_nondeterminism -a -O--sourcedirectory=src
debian/rules override_dh_compress
make[1]: Entering directory '/«BUILDDIR»/mrbayes-3.2.6+dfsg'
dh_compress --exclude=.pdf
make[1]: Leaving directory '/«BUILDDIR»/mrbayes-3.2.6+dfsg'
dh_fixperms -a -O--sourcedirectory=src
dh_strip -a -O--sourcedirectory=src
dh_makeshlibs -a -O--sourcedirectory=src
dh_shlibdeps -a -O--sourcedirectory=src
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrbayes/usr/bin/mb was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrbayes-mpi/usr/lib/mrbayes-mpi/mb-mpi was not linked against libhwloc.so.5 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrbayes-mpi/usr/lib/mrbayes-mpi/mb-mpi was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrbayes-mpi/usr/lib/mrbayes-mpi/mb-mpi was not linked against libdl.so.2 (it uses none of the library's symbols)
dh_installdeb -a -O--sourcedirectory=src
dh_gencontrol -a -O--sourcedirectory=src
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dh_md5sums -a -O--sourcedirectory=src
dh_builddeb -a -O--sourcedirectory=src
dpkg-deb: building package 'mrbayes-dbgsym' in '../mrbayes-dbgsym_3.2.6+dfsg-1_armhf.deb'.
dpkg-deb: building package 'mrbayes-mpi-dbgsym' in '../mrbayes-mpi-dbgsym_3.2.6+dfsg-1_armhf.deb'.
dpkg-deb: building package 'mrbayes' in '../mrbayes_3.2.6+dfsg-1_armhf.deb'.
dpkg-deb: building package 'mrbayes-mpi' in '../mrbayes-mpi_3.2.6+dfsg-1_armhf.deb'.
dpkg-genchanges -B -mRaspbian wandboard test autobuilder <root@raspbian.org> >../mrbayes_3.2.6+dfsg-1_armhf.changes
dpkg-genchanges: warning: package mrbayes-mpi-dbgsym listed in files list but not in control info
dpkg-genchanges: warning: package mrbayes-dbgsym listed in files list but not in control info
dpkg-genchanges: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build mrbayes-3.2.6+dfsg
dpkg-buildpackage: binary-only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
Build finished at 20160105-0642
Finished
────────
I: Built successfully
┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build Chroot │
└──────────────────────────────────────────────────────────────────────────────┘
┌──────────────────────────────────────────────────────────────────────────────┐
│ Changes │
└──────────────────────────────────────────────────────────────────────────────┘
mrbayes_3.2.6+dfsg-1_armhf.changes:
───────────────────────────────────
Format: 1.8
Date: Wed, 30 Dec 2015 22:35:51 +0100
Source: mrbayes
Binary: mrbayes mrbayes-mpi mrbayes-doc
Architecture: armhf
Version: 3.2.6+dfsg-1
Distribution: stretch-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
mrbayes - Bayesian Inference of Phylogeny
mrbayes-doc - Bayesian Inference of Phylogeny - manual
mrbayes-mpi - Bayesian Inference of Phylogeny - mpi version
Changes:
mrbayes (3.2.6+dfsg-1) unstable; urgency=medium
.
* Moved to Git
* New upstream version
* Remove manual debug package which will now be created automatically
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bf0e889104958fe8c028858d7b558b27676117c8ad76a91909602d9d1d192d87 488844 mrbayes-mpi_3.2.6+dfsg-1_armhf.deb
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Files:
d388ad2be89a39e2ecbf023e3806c840 793354 debug extra mrbayes-dbgsym_3.2.6+dfsg-1_armhf.deb
af454805462ef27b432f021c3c022b47 806544 debug extra mrbayes-mpi-dbgsym_3.2.6+dfsg-1_armhf.deb
4a4473c29d5d537542060bf3ab97e75f 488844 science optional mrbayes-mpi_3.2.6+dfsg-1_armhf.deb
643d698fc9c73a4abdc5d96325b82cf9 479044 science optional mrbayes_3.2.6+dfsg-1_armhf.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
mrbayes-dbgsym_3.2.6+dfsg-1_armhf.deb
─────────────────────────────────────
new debian package, version 2.0.
size 793354 bytes: control archive=485 bytes.
416 bytes, 13 lines control
106 bytes, 1 lines md5sums
Package: mrbayes-dbgsym
Source: mrbayes
Version: 3.2.6+dfsg-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 848
Depends: mrbayes (= 3.2.6+dfsg-1)
Section: debug
Priority: extra
Homepage: http://mrbayes.csit.fsu.edu/
Description: Debug symbols for mrbayes
Auto-Built-Package: debug-symbols
Build-Ids: 200accaee366c8dd819316f8411b080b22ca807c
drwxr-xr-x root/root 0 2016-01-05 06:42 ./
drwxr-xr-x root/root 0 2016-01-05 06:42 ./usr/
drwxr-xr-x root/root 0 2016-01-05 06:42 ./usr/lib/
drwxr-xr-x root/root 0 2016-01-05 06:42 ./usr/lib/debug/
drwxr-xr-x root/root 0 2016-01-05 06:42 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2016-01-05 06:42 ./usr/lib/debug/.build-id/20/
-rw-r--r-- root/root 857968 2016-01-05 06:42 ./usr/lib/debug/.build-id/20/0accaee366c8dd819316f8411b080b22ca807c.debug
drwxr-xr-x root/root 0 2016-01-05 06:42 ./usr/share/
drwxr-xr-x root/root 0 2016-01-05 06:42 ./usr/share/doc/
lrwxrwxrwx root/root 0 2016-01-05 06:42 ./usr/share/doc/mrbayes-dbgsym -> mrbayes
mrbayes-mpi-dbgsym_3.2.6+dfsg-1_armhf.deb
─────────────────────────────────────────
new debian package, version 2.0.
size 806544 bytes: control archive=491 bytes.
428 bytes, 13 lines control
106 bytes, 1 lines md5sums
Package: mrbayes-mpi-dbgsym
Source: mrbayes
Version: 3.2.6+dfsg-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 862
Depends: mrbayes-mpi (= 3.2.6+dfsg-1)
Section: debug
Priority: extra
Homepage: http://mrbayes.csit.fsu.edu/
Description: Debug symbols for mrbayes-mpi
Auto-Built-Package: debug-symbols
Build-Ids: f983d49a2f587ef5e78534845ff5c212b746b704
drwxr-xr-x root/root 0 2016-01-05 06:42 ./
drwxr-xr-x root/root 0 2016-01-05 06:42 ./usr/
drwxr-xr-x root/root 0 2016-01-05 06:42 ./usr/lib/
drwxr-xr-x root/root 0 2016-01-05 06:42 ./usr/lib/debug/
drwxr-xr-x root/root 0 2016-01-05 06:42 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2016-01-05 06:42 ./usr/lib/debug/.build-id/f9/
-rw-r--r-- root/root 872436 2016-01-05 06:42 ./usr/lib/debug/.build-id/f9/83d49a2f587ef5e78534845ff5c212b746b704.debug
drwxr-xr-x root/root 0 2016-01-05 06:42 ./usr/share/
drwxr-xr-x root/root 0 2016-01-05 06:42 ./usr/share/doc/
lrwxrwxrwx root/root 0 2016-01-05 06:42 ./usr/share/doc/mrbayes-mpi-dbgsym -> mrbayes-mpi
mrbayes-mpi_3.2.6+dfsg-1_armhf.deb
──────────────────────────────────
new debian package, version 2.0.
size 488844 bytes: control archive=963 bytes.
1023 bytes, 21 lines control
399 bytes, 6 lines md5sums
Package: mrbayes-mpi
Source: mrbayes
Version: 3.2.6+dfsg-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1405
Depends: libc6 (>= 2.7), libhmsbeagle1v5, libhwloc5 (>= 1.11.2), libopenmpi1.6, libreadline6 (>= 6.0), mpi-default-bin
Suggests: mpi-default, mrbayes-doc
Section: science
Priority: optional
Homepage: http://mrbayes.csit.fsu.edu/
Description: Bayesian Inference of Phylogeny - mpi version
Bayesian inference of phylogeny is based upon a quantity called the posterior
probability distribution of trees, which is the probability of a tree
conditioned on the observations. The conditioning is accomplished using
Bayes's theorem. The posterior probability distribution of trees is
impossible to calculate analytically; instead, MrBayes uses a simulation
technique called Markov chain Monte Carlo (or MCMC) to approximate the
posterior probabilities of trees.
.
This package offers a binary compiled for parallel computation with MPI.
drwxr-xr-x root/root 0 2016-01-05 06:42 ./
drwxr-xr-x root/root 0 2016-01-05 06:42 ./usr/
drwxr-xr-x root/root 0 2016-01-05 06:42 ./usr/bin/
-rwxr-xr-x root/root 162 2015-12-30 21:41 ./usr/bin/mb-mpi
drwxr-xr-x root/root 0 2016-01-05 06:42 ./usr/lib/
drwxr-xr-x root/root 0 2016-01-05 06:42 ./usr/lib/mrbayes-mpi/
-rwxr-xr-x root/root 1419668 2016-01-05 06:42 ./usr/lib/mrbayes-mpi/mb-mpi
drwxr-xr-x root/root 0 2016-01-05 06:42 ./usr/share/
drwxr-xr-x root/root 0 2016-01-05 06:42 ./usr/share/doc/
drwxr-xr-x root/root 0 2016-01-05 06:42 ./usr/share/doc/mrbayes-mpi/
-rw-r--r-- root/root 348 2015-12-30 21:41 ./usr/share/doc/mrbayes-mpi/README.Debian
-rw-r--r-- root/root 1890 2015-12-30 21:41 ./usr/share/doc/mrbayes-mpi/changelog.Debian.gz
-rw-r--r-- root/root 1482 2015-12-30 21:41 ./usr/share/doc/mrbayes-mpi/copyright
drwxr-xr-x root/root 0 2016-01-05 06:42 ./usr/share/man/
drwxr-xr-x root/root 0 2016-01-05 06:42 ./usr/share/man/man1/
-rw-r--r-- root/root 226 2016-01-05 06:42 ./usr/share/man/man1/mb-mpi.1.gz
mrbayes_3.2.6+dfsg-1_armhf.deb
──────────────────────────────
new debian package, version 2.0.
size 479044 bytes: control archive=844 bytes.
844 bytes, 18 lines control
318 bytes, 5 lines md5sums
Package: mrbayes
Version: 3.2.6+dfsg-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1378
Depends: libc6 (>= 2.7), libhmsbeagle1v5, libreadline6 (>= 6.0)
Suggests: mrbayes-doc
Section: science
Priority: optional
Homepage: http://mrbayes.csit.fsu.edu/
Description: Bayesian Inference of Phylogeny
Bayesian inference of phylogeny is based upon a quantity called the posterior
probability distribution of trees, which is the probability of a tree
conditioned on the observations. The conditioning is accomplished using
Bayes's theorem. The posterior probability distribution of trees is
impossible to calculate analytically; instead, MrBayes uses a simulation
technique called Markov chain Monte Carlo (or MCMC) to approximate the
posterior probabilities of trees.
drwxr-xr-x root/root 0 2016-01-05 06:42 ./
drwxr-xr-x root/root 0 2016-01-05 06:42 ./usr/
drwxr-xr-x root/root 0 2016-01-05 06:42 ./usr/bin/
-rwxr-xr-x root/root 1395052 2016-01-05 06:42 ./usr/bin/mb
drwxr-xr-x root/root 0 2016-01-05 06:42 ./usr/share/
drwxr-xr-x root/root 0 2016-01-05 06:42 ./usr/share/doc/
drwxr-xr-x root/root 0 2016-01-05 06:42 ./usr/share/doc/mrbayes/
-rw-r--r-- root/root 311 2015-12-30 21:41 ./usr/share/doc/mrbayes/README.Debian
-rw-r--r-- root/root 1890 2015-12-30 21:41 ./usr/share/doc/mrbayes/changelog.Debian.gz
-rw-r--r-- root/root 1482 2015-12-30 21:41 ./usr/share/doc/mrbayes/copyright
drwxr-xr-x root/root 0 2016-01-05 06:42 ./usr/share/man/
drwxr-xr-x root/root 0 2016-01-05 06:42 ./usr/share/man/man1/
-rw-r--r-- root/root 206 2016-01-05 06:42 ./usr/share/man/man1/mb.1.gz
┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
┌──────────────────────────────────────────────────────────────────────────────┐
│ Cleanup │
└──────────────────────────────────────────────────────────────────────────────┘
Purging /«BUILDDIR»
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary │
└──────────────────────────────────────────────────────────────────────────────┘
Build Architecture: armhf
Build-Space: 33324
Build-Time: 1290
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 230
Job: mrbayes_3.2.6+dfsg-1
Machine Architecture: armhf
Package: mrbayes
Package-Time: 1568
Source-Version: 3.2.6+dfsg-1
Space: 33324
Status: successful
Version: 3.2.6+dfsg-1
────────────────────────────────────────────────────────────────────────────────
Finished at 20160105-0642
Build needed 00:26:08, 33324k disc space