mrbayes →
3.2.6+dfsg-1+b1 →
armhf → 2016-03-10 05:23:17
sbuild (Debian sbuild) 0.66.0 (04 Oct 2015) on testbuildd.raspbian.org
+==============================================================================+
| mrbayes 3.2.6+dfsg-1+b1 (armhf) 10 Mar 2016 04:52 |
+==============================================================================+
Package: mrbayes
Version: 3.2.6+dfsg-1+b1
Source Version: 3.2.6+dfsg-1
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'build/mrbayes-zq0Dwk/mrbayes-3.2.6+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/mrbayes-zq0Dwk' with '<<BUILDDIR>>'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-a68c64a0-eacd-4c06-857c-273eda651f98' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private stretch-staging/main Sources [8789 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf Packages [10.9 MB]
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+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'mrbayes' packaging is maintained in the 'Git' version control system at:
git://anonscm.debian.org/debian-med/mrbayes.git
Please use:
git clone git://anonscm.debian.org/debian-med/mrbayes.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 2653 kB of source archives.
Get:1 http://172.17.0.1/private stretch-staging/main mrbayes 3.2.6+dfsg-1 (dsc) [2317 B]
Get:2 http://172.17.0.1/private stretch-staging/main mrbayes 3.2.6+dfsg-1 (tar) [2644 kB]
Get:3 http://172.17.0.1/private stretch-staging/main mrbayes 3.2.6+dfsg-1 (diff) [6192 B]
Fetched 2653 kB in 1s (2221 kB/s)
Download complete and in download only mode
Check architectures
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Check dependencies
------------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-5hSCF2/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Get:1 file:/<<BUILDDIR>>/resolver-5hSCF2/apt_archive ./ InRelease
Ign:1 file:/<<BUILDDIR>>/resolver-5hSCF2/apt_archive ./ InRelease
Get:2 file:/<<BUILDDIR>>/resolver-5hSCF2/apt_archive ./ Release [2119 B]
Get:2 file:/<<BUILDDIR>>/resolver-5hSCF2/apt_archive ./ Release [2119 B]
Get:3 file:/<<BUILDDIR>>/resolver-5hSCF2/apt_archive ./ Release.gpg [299 B]
Get:3 file:/<<BUILDDIR>>/resolver-5hSCF2/apt_archive ./ Release.gpg [299 B]
Get:4 file:/<<BUILDDIR>>/resolver-5hSCF2/apt_archive ./ Sources [214 B]
Get:5 file:/<<BUILDDIR>>/resolver-5hSCF2/apt_archive ./ Packages [526 B]
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+------------------------------------------------------------------------------+
| Install core build dependencies (apt-based resolver) |
+------------------------------------------------------------------------------+
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 71 not upgraded.
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Get:1 file:/<<BUILDDIR>>/resolver-5hSCF2/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [768 B]
debconf: delaying package configuration, since apt-utils is not installed
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Merged Build-Depends: debhelper (>= 9), libreadline-dev, mpi-default-dev, libhmsbeagle-dev (<< 2.1-1) | libhmsbeagle-dev (>= 2.1-2), autoconf, automake
Filtered Build-Depends: debhelper (>= 9), libreadline-dev, mpi-default-dev, libhmsbeagle-dev (<< 2.1-1) | libhmsbeagle-dev (>= 2.1-2), autoconf, automake
dpkg-deb: building package 'sbuild-build-depends-mrbayes-dummy' in '/<<BUILDDIR>>/resolver-bWGP7B/apt_archive/sbuild-build-depends-mrbayes-dummy.deb'.
OK
Get:1 file:/<<BUILDDIR>>/resolver-bWGP7B/apt_archive ./ InRelease
Ign:1 file:/<<BUILDDIR>>/resolver-bWGP7B/apt_archive ./ InRelease
Get:2 file:/<<BUILDDIR>>/resolver-bWGP7B/apt_archive ./ Release [2119 B]
Get:2 file:/<<BUILDDIR>>/resolver-bWGP7B/apt_archive ./ Release [2119 B]
Get:3 file:/<<BUILDDIR>>/resolver-bWGP7B/apt_archive ./ Release.gpg [299 B]
Get:3 file:/<<BUILDDIR>>/resolver-bWGP7B/apt_archive ./ Release.gpg [299 B]
Get:4 file:/<<BUILDDIR>>/resolver-bWGP7B/apt_archive ./ Sources [269 B]
Get:5 file:/<<BUILDDIR>>/resolver-bWGP7B/apt_archive ./ Packages [590 B]
Reading package lists...
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+------------------------------------------------------------------------------+
| Install mrbayes build dependencies (apt-based resolver) |
+------------------------------------------------------------------------------+
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
autoconf automake autotools-dev bsdmainutils cpp-5 debhelper
dh-strip-nondeterminism file g++-5 gcc-5 gcc-5-base gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libasan2 libatomic1 libcc1-0
libcroco3 libffi6 libfile-stripnondeterminism-perl libgcc-5-dev libgcc1
libgfortran3 libglib2.0-0 libgomp1 libhmsbeagle-dev libhmsbeagle1v5
libhwloc-dev libhwloc5 libibverbs-dev libibverbs1 libicu55 libltdl-dev
libltdl7 libmagic1 libncurses5 libncursesw5 libopenmpi-dev libopenmpi1.10
libpipeline1 libreadline-dev libreadline6-dev libsigsegv2 libstdc++-5-dev
libstdc++6 libtimedate-perl libtinfo-dev libtinfo5 libubsan0 libunistring0
libxml2 m4 man-db mpi-default-dev openmpi-common po-debconf
Suggested packages:
autoconf-archive gnu-standards autoconf-doc libtool wamerican | wordlist
whois vacation gcc-5-locales dh-make gcc-5-doc libstdc++6-5-dbg libgcc1-dbg
libgomp1-dbg libitm1-dbg libatomic1-dbg libasan2-dbg liblsan0-dbg
libtsan0-dbg libubsan0-dbg libcilkrts5-dbg libmpx0-dbg libquadmath0-dbg
gettext-doc autopoint libasprintf-dev libgettextpo-dev groff
libhwloc-contrib-plugins libtool-doc opennmpi-doc readline-doc
libstdc++-5-doc less www-browser libmail-box-perl
Recommended packages:
curl | wget | lynx-cur libglib2.0-data shared-mime-info xdg-user-dirs
libhwloc-plugins libtool libgpm2 openmpi-bin xml-core libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autotools-dev bsdmainutils debhelper
dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian
libarchive-zip-perl libcroco3 libffi6 libfile-stripnondeterminism-perl
libgfortran3 libglib2.0-0 libhmsbeagle-dev libhmsbeagle1v5 libhwloc-dev
libhwloc5 libibverbs-dev libibverbs1 libicu55 libltdl-dev libltdl7 libmagic1
libopenmpi-dev libopenmpi1.10 libpipeline1 libreadline-dev libreadline6-dev
libsigsegv2 libtimedate-perl libtinfo-dev libunistring0 libxml2 m4 man-db
mpi-default-dev openmpi-common po-debconf sbuild-build-depends-mrbayes-dummy
The following packages will be upgraded:
cpp-5 g++-5 gcc-5 gcc-5-base libasan2 libatomic1 libcc1-0 libgcc-5-dev
libgcc1 libgomp1 libncurses5 libncursesw5 libstdc++-5-dev libstdc++6
libtinfo5 libubsan0
16 upgraded, 43 newly installed, 0 to remove and 55 not upgraded.
Need to get 95.0 MB/95.0 MB of archives.
After this operation, 76.8 MB of additional disk space will be used.
Get:1 file:/<<BUILDDIR>>/resolver-bWGP7B/apt_archive ./ sbuild-build-depends-mrbayes-dummy 0.invalid.0 [822 B]
Get:2 http://172.17.0.1/private stretch-staging/main armhf libgomp1 armhf 5.3.1-10 [47.2 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf libatomic1 armhf 5.3.1-10 [6550 B]
Get:4 http://172.17.0.1/private stretch-staging/main armhf gcc-5-base armhf 5.3.1-10 [169 kB]
Get:5 http://172.17.0.1/private stretch-staging/main armhf libgcc1 armhf 1:5.3.1-10 [38.4 kB]
Get:6 http://172.17.0.1/private stretch-staging/main armhf libasan2 armhf 5.3.1-10 [227 kB]
Get:7 http://172.17.0.1/private stretch-staging/main armhf libubsan0 armhf 5.3.1-10 [84.3 kB]
Get:8 http://172.17.0.1/private stretch-staging/main armhf cpp-5 armhf 5.3.1-10 [22.9 MB]
Get:9 http://172.17.0.1/private stretch-staging/main armhf libcc1-0 armhf 5.3.1-10 [24.8 kB]
Get:10 http://172.17.0.1/private stretch-staging/main armhf g++-5 armhf 5.3.1-10 [24.5 MB]
Get:11 http://172.17.0.1/private stretch-staging/main armhf gcc-5 armhf 5.3.1-10 [23.0 MB]
Get:12 http://172.17.0.1/private stretch-staging/main armhf libgcc-5-dev armhf 5.3.1-10 [448 kB]
Get:13 http://172.17.0.1/private stretch-staging/main armhf libstdc++-5-dev armhf 5.3.1-10 [1430 kB]
Get:14 http://172.17.0.1/private stretch-staging/main armhf libstdc++6 armhf 5.3.1-10 [326 kB]
Get:15 http://172.17.0.1/private stretch-staging/main armhf groff-base armhf 1.22.3-7 [1083 kB]
Get:16 http://172.17.0.1/private stretch-staging/main armhf libtinfo5 armhf 6.0+20160213-1 [281 kB]
Get:17 http://172.17.0.1/private stretch-staging/main armhf libncurses5 armhf 6.0+20160213-1 [74.8 kB]
Get:18 http://172.17.0.1/private stretch-staging/main armhf libncursesw5 armhf 6.0+20160213-1 [93.3 kB]
Get:19 http://172.17.0.1/private stretch-staging/main armhf bsdmainutils armhf 9.0.6 [177 kB]
Get:20 http://172.17.0.1/private stretch-staging/main armhf libpipeline1 armhf 1.4.1-2 [23.7 kB]
Get:21 http://172.17.0.1/private stretch-staging/main armhf man-db armhf 2.7.5-1 [975 kB]
Get:22 http://172.17.0.1/private stretch-staging/main armhf libsigsegv2 armhf 2.10-4 [28.2 kB]
Get:23 http://172.17.0.1/private stretch-staging/main armhf libunistring0 armhf 0.9.3-5.2 [253 kB]
Get:24 http://172.17.0.1/private stretch-staging/main armhf libmagic1 armhf 1:5.25-2 [250 kB]
Get:25 http://172.17.0.1/private stretch-staging/main armhf file armhf 1:5.25-2 [61.2 kB]
Get:26 http://172.17.0.1/private stretch-staging/main armhf gettext-base armhf 0.19.7-2 [111 kB]
Get:27 http://172.17.0.1/private stretch-staging/main armhf libicu55 armhf 55.1-7 [7380 kB]
Get:28 http://172.17.0.1/private stretch-staging/main armhf libxml2 armhf 2.9.3+dfsg1-1 [800 kB]
Get:29 http://172.17.0.1/private stretch-staging/main armhf m4 armhf 1.4.17-5 [239 kB]
Get:30 http://172.17.0.1/private stretch-staging/main armhf autoconf all 2.69-9 [338 kB]
Get:31 http://172.17.0.1/private stretch-staging/main armhf autotools-dev all 20150820.1 [71.7 kB]
Get:32 http://172.17.0.1/private stretch-staging/main armhf automake all 1:1.15-4 [735 kB]
Get:33 http://172.17.0.1/private stretch-staging/main armhf libffi6 armhf 3.2.1-4 [18.5 kB]
Get:34 http://172.17.0.1/private stretch-staging/main armhf libglib2.0-0 armhf 2.46.2-3 [2482 kB]
Get:35 http://172.17.0.1/private stretch-staging/main armhf libcroco3 armhf 0.6.11-1 [131 kB]
Get:36 http://172.17.0.1/private stretch-staging/main armhf gettext armhf 0.19.7-2 [1400 kB]
Get:37 http://172.17.0.1/private stretch-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:38 http://172.17.0.1/private stretch-staging/main armhf po-debconf all 1.0.19 [249 kB]
Get:39 http://172.17.0.1/private stretch-staging/main armhf libarchive-zip-perl all 1.56-2 [94.9 kB]
Get:40 http://172.17.0.1/private stretch-staging/main armhf libfile-stripnondeterminism-perl all 0.016-1 [11.9 kB]
Get:41 http://172.17.0.1/private stretch-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:42 http://172.17.0.1/private stretch-staging/main armhf dh-strip-nondeterminism all 0.016-1 [6998 B]
Get:43 http://172.17.0.1/private stretch-staging/main armhf debhelper all 9.20160115 [827 kB]
Get:44 http://172.17.0.1/private stretch-staging/main armhf libgfortran3 armhf 5.3.1-10 [153 kB]
Get:45 http://172.17.0.1/private stretch-staging/main armhf libhmsbeagle1v5 armhf 2.1.2+20150609-1.1 [48.0 kB]
Get:46 http://172.17.0.1/private stretch-staging/main armhf libhmsbeagle-dev armhf 2.1.2+20150609-1.1 [149 kB]
Get:47 http://172.17.0.1/private stretch-staging/main armhf libltdl7 armhf 2.4.6-0.1 [42.8 kB]
Get:48 http://172.17.0.1/private stretch-staging/main armhf libltdl-dev armhf 2.4.6-0.1 [159 kB]
Get:49 http://172.17.0.1/private stretch-staging/main armhf libtinfo-dev armhf 6.0+20160213-1 [66.0 kB]
Get:50 http://172.17.0.1/private stretch-staging/main armhf libreadline6-dev armhf 6.3-8+b3 [105 kB]
Get:51 http://172.17.0.1/private stretch-staging/main armhf libreadline-dev armhf 6.3-8+b3 [958 B]
Get:52 http://172.17.0.1/private stretch-staging/main armhf libhwloc5 armhf 1.11.2-3 [80.8 kB]
Get:53 http://172.17.0.1/private stretch-staging/main armhf libhwloc-dev armhf 1.11.2-3 [133 kB]
Get:54 http://172.17.0.1/private stretch-staging/main armhf libibverbs1 armhf 1.1.8-1.1 [28.5 kB]
Get:55 http://172.17.0.1/private stretch-staging/main armhf libibverbs-dev armhf 1.1.8-1.1 [82.6 kB]
Get:56 http://172.17.0.1/private stretch-staging/main armhf libopenmpi1.10 armhf 1.10.2-8+rpi1 [1781 kB]
Get:57 http://172.17.0.1/private stretch-staging/main armhf openmpi-common all 1.10.2-8+rpi1 [141 kB]
Get:58 http://172.17.0.1/private stretch-staging/main armhf libopenmpi-dev armhf 1.10.2-8+rpi1 [625 kB]
Get:59 http://172.17.0.1/private stretch-staging/main armhf mpi-default-dev armhf 1.4 [4612 B]
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Processing triggers for libc-bin (2.21-7) ...
Setting up libgomp1:armhf (5.3.1-10) ...
Setting up libatomic1:armhf (5.3.1-10) ...
Setting up libasan2:armhf (5.3.1-10) ...
Setting up libubsan0:armhf (5.3.1-10) ...
Setting up cpp-5 (5.3.1-10) ...
Setting up libcc1-0:armhf (5.3.1-10) ...
Setting up libgcc-5-dev:armhf (5.3.1-10) ...
Setting up gcc-5 (5.3.1-10) ...
Setting up libstdc++-5-dev:armhf (5.3.1-10) ...
Setting up g++-5 (5.3.1-10) ...
Setting up groff-base (1.22.3-7) ...
Setting up bsdmainutils (9.0.6) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libpipeline1:armhf (1.4.1-2) ...
Setting up man-db (2.7.5-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libsigsegv2:armhf (2.10-4) ...
Setting up libunistring0:armhf (0.9.3-5.2) ...
Setting up libmagic1:armhf (1:5.25-2) ...
Setting up file (1:5.25-2) ...
Setting up gettext-base (0.19.7-2) ...
Setting up libicu55:armhf (55.1-7) ...
Setting up libxml2:armhf (2.9.3+dfsg1-1) ...
Setting up m4 (1.4.17-5) ...
Setting up autoconf (2.69-9) ...
Setting up autotools-dev (20150820.1) ...
Setting up automake (1:1.15-4) ...
update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode
Setting up libffi6:armhf (3.2.1-4) ...
Setting up libglib2.0-0:armhf (2.46.2-3) ...
No schema files found: doing nothing.
Setting up libcroco3:armhf (0.6.11-1) ...
Setting up gettext (0.19.7-2) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up po-debconf (1.0.19) ...
Setting up libarchive-zip-perl (1.56-2) ...
Setting up libfile-stripnondeterminism-perl (0.016-1) ...
Setting up libtimedate-perl (2.3000-2) ...
Setting up libgfortran3:armhf (5.3.1-10) ...
Setting up libhmsbeagle1v5 (2.1.2+20150609-1.1) ...
Setting up libhmsbeagle-dev (2.1.2+20150609-1.1) ...
Setting up libltdl7:armhf (2.4.6-0.1) ...
Setting up libltdl-dev:armhf (2.4.6-0.1) ...
Setting up libtinfo-dev:armhf (6.0+20160213-1) ...
Setting up libreadline6-dev:armhf (6.3-8+b3) ...
Setting up libreadline-dev:armhf (6.3-8+b3) ...
Setting up libhwloc5:armhf (1.11.2-3) ...
Setting up libhwloc-dev:armhf (1.11.2-3) ...
Setting up libibverbs1 (1.1.8-1.1) ...
Setting up libibverbs-dev (1.1.8-1.1) ...
Setting up libopenmpi1.10 (1.10.2-8+rpi1) ...
Setting up openmpi-common (1.10.2-8+rpi1) ...
Setting up libopenmpi-dev (1.10.2-8+rpi1) ...
update-alternatives: using /usr/lib/openmpi/include to provide /usr/include/mpi (mpi) in auto mode
Setting up mpi-default-dev (1.4) ...
Setting up debhelper (9.20160115) ...
Setting up sbuild-build-depends-mrbayes-dummy (0.invalid.0) ...
Setting up dh-strip-nondeterminism (0.016-1) ...
Processing triggers for libc-bin (2.21-7) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 3.19.0-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.26-3 dpkg-dev_1.18.4 g++-5_5.3.1-10 gcc-5_5.3.1-10 libc6-dev_2.21-7 libstdc++-5-dev_5.3.1-10 libstdc++6_5.3.1-10 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: adduser_3.113+nmu3 apt_1.2.3 autoconf_2.69-9 automake_1:1.15-4 autotools-dev_20150820.1 base-files_9.5+rpi1 base-passwd_3.5.39 bash_4.3-14 binutils_2.26-3 bsdmainutils_9.0.6 bsdutils_1:2.27.1-3 build-essential_11.7 bzip2_1.0.6-8 coreutils_8.24-1 cpio_2.11+dfsg-4.1 cpp_4:5.3.1-1+rpi1 cpp-5_5.3.1-10 dash_0.5.8-2.1 debconf_1.5.58 debfoster_2.7-2 debhelper_9.20160115 debianutils_4.7 dh-strip-nondeterminism_0.016-1 diffutils_1:3.3-3 dmsetup_2:1.02.115-2 dpkg_1.18.4 dpkg-dev_1.18.4 e2fslibs_1.42.13-1 e2fsprogs_1.42.13-1 fakeroot_1.20.2-1 file_1:5.25-2 findutils_4.6.0+git+20160126-2 g++_4:5.3.1-1+rpi1 g++-5_5.3.1-10 gcc_4:5.3.1-1+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-10 gcc-5_5.3.1-10 gcc-5-base_5.3.1-10 gettext_0.19.7-2 gettext-base_0.19.7-2 gnupg_1.4.20-1 gpgv_1.4.20-1 grep_2.22-1 groff-base_1.22.3-7 gzip_1.6-4 hostname_3.16 init_1.24 init-system-helpers_1.24 initramfs-tools_0.120 initscripts_2.88dsf-59.2 insserv_1.14.0-5.2 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-7+rpi1 kmod_22-1 libacl1_2.2.52-3 libapparmor1_2.10-3 libapt-pkg5.0_1.2.3 libarchive-zip-perl_1.56-2 libasan2_5.3.1-10 libatomic1_5.3.1-10 libattr1_1:2.4.47-2 libaudit-common_1:2.4.5-1 libaudit1_1:2.4.5-1 libblkid1_2.27.1-3 libbz2-1.0_1.0.6-8 libc-bin_2.21-7 libc-dev-bin_2.21-7 libc6_2.21-7 libc6-dev_2.21-7 libcap2_1:2.24-12 libcap2-bin_1:2.24-12 libcc1-0_5.3.1-10 libcomerr2_1.42.13-1 libcroco3_0.6.11-1 libcryptsetup4_2:1.7.0-2 libdb5.3_5.3.28-11 libdbus-1-3_1.10.6-1 libdebconfclient0_0.204 libdevmapper1.02.1_2:1.02.115-2 libdpkg-perl_1.18.4 libdrm2_2.4.66-2 libfakeroot_1.20.2-1 libfdisk1_2.27.1-3 libffi6_3.2.1-4 libfile-stripnondeterminism-perl_0.016-1 libgc1c2_1:7.4.2-7.3 libgcc-5-dev_5.3.1-10 libgcc1_1:5.3.1-10 libgcrypt20_1.6.4-5 libgdbm3_1.8.3-13.1 libgfortran3_5.3.1-10 libglib2.0-0_2.46.2-3 libgmp10_2:6.1.0+dfsg-2 libgomp1_5.3.1-10 libgpg-error0_1.21-1 libhmsbeagle-dev_2.1.2+20150609-1.1 libhmsbeagle1v5_2.1.2+20150609-1.1 libhwloc-dev_1.11.2-3 libhwloc5_1.11.2-3 libibverbs-dev_1.1.8-1.1 libibverbs1_1.1.8-1.1 libicu55_55.1-7 libisl15_0.16.1-1 libklibc_2.0.4-7+rpi1 libkmod2_22-1 libltdl-dev_2.4.6-0.1 libltdl7_2.4.6-0.1 liblz4-1_0.0~r131-1 liblzma5_5.1.1alpha+20120614-2.1 libmagic1_1:5.25-2 libmount1_2.27.1-3 libmpc3_1.0.3-1 libmpfr4_3.1.3-2 libncurses5_6.0+20160213-1 libncursesw5_6.0+20160213-1 libopenmpi-dev_1.10.2-8+rpi1 libopenmpi1.10_1.10.2-8+rpi1 libpam-modules_1.1.8-3.2 libpam-modules-bin_1.1.8-3.2 libpam-runtime_1.1.8-3.2 libpam0g_1.1.8-3.2 libpcre3_2:8.38-1 libperl5.22_5.22.1-5 libpipeline1_1.4.1-2 libpng12-0_1.2.54-1 libprocps5_2:3.3.11-3 libreadline-dev_6.3-8+b3 libreadline6_6.3-8+b3 libreadline6-dev_6.3-8+b3 libseccomp2_2.2.3-2 libselinux1_2.4-3 libsemanage-common_2.4-3 libsemanage1_2.4-3 libsepol1_2.4-2 libsigsegv2_2.10-4 libsmartcols1_2.27.1-3 libss2_1.42.13-1 libstdc++-5-dev_5.3.1-10 libstdc++6_5.3.1-10 libsystemd0_228-6 libtext-charwidth-perl_0.04-7+b6 libtext-iconv-perl_1.7-5+b7 libtext-wrapi18n-perl_0.06-7.1 libtimedate-perl_2.3000-2 libtinfo-dev_6.0+20160213-1 libtinfo5_6.0+20160213-1 libubsan0_5.3.1-10 libudev1_228-6 libunistring0_0.9.3-5.2 libusb-0.1-4_2:0.1.12-28 libustr-1.0-1_1.0.4-5 libuuid1_2.27.1-3 libxml2_2.9.3+dfsg1-1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.2-3.1 lsb-base_9.20160110+rpi1 m4_1.4.17-5 make_4.1-5 makedev_2.3.1-93 man-db_2.7.5-1 manpages_4.04-1 mawk_1.3.3-17 mount_2.27.1-3 mpi-default-dev_1.4 multiarch-support_2.21-7 nano_2.5.1-1 ncurses-base_6.0+20151024-2 ncurses-bin_6.0+20151024-2 openmpi-common_1.10.2-8+rpi1 passwd_1:4.2-3.1 patch_2.7.5-1 perl_5.22.1-5 perl-base_5.22.1-5 perl-modules-5.22_5.22.1-7 po-debconf_1.0.19 procps_2:3.3.11-3 raspbian-archive-keyring_20120528.2 readline-common_6.3-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-mrbayes-dummy_0.invalid.0 sed_4.2.2-6.1 sensible-utils_0.0.9 startpar_0.59-3 systemd_228-6 systemd-sysv_228-6 sysv-rc_2.88dsf-59.2 sysvinit-utils_2.88dsf-59.2 tar_1.28-2.1 tzdata_2016a-1 udev_228-6 util-linux_2.27.1-3 xz-utils_5.1.1alpha+20120614-2.1 zlib1g_1:1.2.8.dfsg-2+b1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Wed Dec 30 21:43:36 2015 UTC using RSA key ID D1C646D1
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./mrbayes_3.2.6+dfsg-1.dsc
dpkg-source: info: extracting mrbayes in mrbayes-3.2.6+dfsg
dpkg-source: info: unpacking mrbayes_3.2.6+dfsg.orig.tar.xz
dpkg-source: info: unpacking mrbayes_3.2.6+dfsg-1.debian.tar.xz
dpkg-source: info: applying as-needed.patch
dpkg-source: info: applying ldlibs.patch
Check disc space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 3.2.6+dfsg-1+b1
User Environment
----------------
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=111
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-a68c64a0-eacd-4c06-857c-273eda651f98
SCHROOT_UID=106
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: source package mrbayes
dpkg-buildpackage: source version 3.2.6+dfsg-1+b1
dpkg-buildpackage: source distribution stretch-staging
dpkg-source --before-build mrbayes-3.2.6+dfsg
dpkg-buildpackage: host architecture armhf
fakeroot debian/rules clean
dh clean --sourcedirectory=src
dh_testdir -O--sourcedirectory=src
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<BUILDDIR>>/mrbayes-3.2.6+dfsg'
( cd src ; /usr/bin/make -f Makefile.in distclean )
make[2]: Entering directory '/<<BUILDDIR>>/mrbayes-3.2.6+dfsg/src'
rm -f *.o *~ mb
rm -rf Makefile config.log config.status config.h *.cache
make[2]: Leaving directory '/<<BUILDDIR>>/mrbayes-3.2.6+dfsg/src'
rm -f src/configure
rm -f mb mb-mpi src/mb
make[1]: Leaving directory '/<<BUILDDIR>>/mrbayes-3.2.6+dfsg'
dh_clean -O--sourcedirectory=src
debian/rules build-arch
dh build-arch --sourcedirectory=src
dh_testdir -a -O--sourcedirectory=src
dh_update_autotools_config -a -O--sourcedirectory=src
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<BUILDDIR>>/mrbayes-3.2.6+dfsg'
#Configure for MPI at first
( cd src ; autoconf )
dh_auto_configure -- --with-beagle=/usr --enable-mpi=yes --enable-debug=yes
./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --libexecdir=\${prefix}/lib/arm-linux-gnueabihf --disable-maintainer-mode --disable-dependency-tracking --with-beagle=/usr --enable-mpi=yes --enable-debug=yes
configure: WARNING: unrecognized options: --disable-silent-rules, --disable-maintainer-mode, --disable-dependency-tracking
configure: NOTICE: Because the variable $CFLAGS is defined in your shell, the
default MrBayes flags will be overridden. To ensure optimal performance, please check
that your $CFLAGS variable is set correctly. Alternatively, unset the $CFLAGS
variable in your shell in order to use the default MrBayes compiler options.
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for exp in -lm... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking for mpicc... yes
checking for SSE support... no
checking for /usr/include/libhmsbeagle/libhmsbeagle/beagle.h... no
checking for /usr/include/libhmsbeagle-1/libhmsbeagle/beagle.h... yes
checking for /usr/include/libhmsbeagle/libhmsbeagle/platform.h... no
checking for /usr/include/libhmsbeagle-1/libhmsbeagle/platform.h... yes
checking for /usr/lib... yes
checking for readline in -lreadline... yes
checking for rl_completion_matches function... yes
checking for 32 or 64 bits cpu... 32
configure: creating ./config.status
config.status: creating Makefile
config.status: creating config.h
configure: WARNING: unrecognized options: --disable-silent-rules, --disable-maintainer-mode, --disable-dependency-tracking
make[1]: Leaving directory '/<<BUILDDIR>>/mrbayes-3.2.6+dfsg'
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<BUILDDIR>>/mrbayes-3.2.6+dfsg'
# build mb-mpi (from initial config)
LIBS="-Wl,--as-needed" dh_auto_build
make -j1
make[2]: Entering directory '/<<BUILDDIR>>/mrbayes-3.2.6+dfsg/src'
mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bayes.o bayes.c
mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o command.o command.c
mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o model.o model.c
mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mcmc.o mcmc.c
mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o likelihood.o likelihood.c
mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o proposal.o proposal.c
mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sumpt.o sumpt.c
mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o utils.o utils.c
mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mbbeagle.o mbbeagle.c
mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o best.o best.c
mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -o mb bayes.o command.o model.o mcmc.o likelihood.o proposal.o sumpt.o utils.o mbbeagle.o best.o -Wl,-z,relro -L/usr/lib -lhmsbeagle -lreadline -lm
make[2]: Leaving directory '/<<BUILDDIR>>/mrbayes-3.2.6+dfsg/src'
mv src/mb ./mb-mpi
# Now - build mb
( cd src ; make clean )
make[2]: Entering directory '/<<BUILDDIR>>/mrbayes-3.2.6+dfsg/src'
rm -f *.o *~ mb
make[2]: Leaving directory '/<<BUILDDIR>>/mrbayes-3.2.6+dfsg/src'
dh_auto_configure -- --with-beagle=/usr --enable-mpi=no --enable-debug=yes
./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --libexecdir=\${prefix}/lib/arm-linux-gnueabihf --disable-maintainer-mode --disable-dependency-tracking --with-beagle=/usr --enable-mpi=no --enable-debug=yes
configure: WARNING: unrecognized options: --disable-silent-rules, --disable-maintainer-mode, --disable-dependency-tracking
configure: NOTICE: Because the variable $CFLAGS is defined in your shell, the
default MrBayes flags will be overridden. To ensure optimal performance, please check
that your $CFLAGS variable is set correctly. Alternatively, unset the $CFLAGS
variable in your shell in order to use the default MrBayes compiler options.
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for exp in -lm... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking for SSE support... no
checking for /usr/include/libhmsbeagle/libhmsbeagle/beagle.h... no
checking for /usr/include/libhmsbeagle-1/libhmsbeagle/beagle.h... yes
checking for /usr/include/libhmsbeagle/libhmsbeagle/platform.h... no
checking for /usr/include/libhmsbeagle-1/libhmsbeagle/platform.h... yes
checking for /usr/lib... yes
checking for readline in -lreadline... yes
checking for rl_completion_matches function... yes
checking for 32 or 64 bits cpu... 32
configure: creating ./config.status
config.status: creating Makefile
config.status: creating config.h
configure: WARNING: unrecognized options: --disable-silent-rules, --disable-maintainer-mode, --disable-dependency-tracking
LIBS="-Wl,--as-needed" dh_auto_build
make -j1
make[2]: Entering directory '/<<BUILDDIR>>/mrbayes-3.2.6+dfsg/src'
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bayes.o bayes.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o command.o command.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o model.o model.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mcmc.o mcmc.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o likelihood.o likelihood.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o proposal.o proposal.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sumpt.o sumpt.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o utils.o utils.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mbbeagle.o mbbeagle.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o best.o best.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -o mb bayes.o command.o model.o mcmc.o likelihood.o proposal.o sumpt.o utils.o mbbeagle.o best.o -Wl,-z,relro -L/usr/lib -lhmsbeagle -lreadline -lm
make[2]: Leaving directory '/<<BUILDDIR>>/mrbayes-3.2.6+dfsg/src'
mv src/mb .
make[1]: Leaving directory '/<<BUILDDIR>>/mrbayes-3.2.6+dfsg'
dh_auto_test -a -O--sourcedirectory=src
fakeroot debian/rules binary-arch
dh binary-arch --sourcedirectory=src
dh_testroot -a -O--sourcedirectory=src
dh_prep -a -O--sourcedirectory=src
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<BUILDDIR>>/mrbayes-3.2.6+dfsg'
echo "Do not try to install to /usr/local/bin"
Do not try to install to /usr/local/bin
make[1]: Leaving directory '/<<BUILDDIR>>/mrbayes-3.2.6+dfsg'
dh_install -a -O--sourcedirectory=src
dh_installdocs -a -O--sourcedirectory=src
dh_installchangelogs -a -O--sourcedirectory=src
dh_installman -a -O--sourcedirectory=src
dh_perl -a -O--sourcedirectory=src
dh_link -a -O--sourcedirectory=src
dh_strip_nondeterminism -a -O--sourcedirectory=src
debian/rules override_dh_compress
make[1]: Entering directory '/<<BUILDDIR>>/mrbayes-3.2.6+dfsg'
dh_compress --exclude=.pdf
make[1]: Leaving directory '/<<BUILDDIR>>/mrbayes-3.2.6+dfsg'
dh_fixperms -a -O--sourcedirectory=src
dh_strip -a -O--sourcedirectory=src
dh_makeshlibs -a -O--sourcedirectory=src
dh_shlibdeps -a -O--sourcedirectory=src
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrbayes/usr/bin/mb was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrbayes-mpi/usr/lib/mrbayes-mpi/mb-mpi was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
dh_installdeb -a -O--sourcedirectory=src
dh_gencontrol -a -O--sourcedirectory=src
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dh_md5sums -a -O--sourcedirectory=src
dh_builddeb -a -O--sourcedirectory=src
dpkg-deb: building package 'mrbayes-mpi-dbgsym' in '../mrbayes-mpi-dbgsym_3.2.6+dfsg-1+b1_armhf.deb'.
dpkg-deb: building package 'mrbayes-dbgsym' in '../mrbayes-dbgsym_3.2.6+dfsg-1+b1_armhf.deb'.
dpkg-deb: building package 'mrbayes' in '../mrbayes_3.2.6+dfsg-1+b1_armhf.deb'.
dpkg-deb: building package 'mrbayes-mpi' in '../mrbayes-mpi_3.2.6+dfsg-1+b1_armhf.deb'.
dpkg-genchanges -B -mRaspbian nitrogen6x test autobuilder <root@raspbian.org> >../mrbayes_3.2.6+dfsg-1+b1_armhf.changes
dpkg-genchanges: warning: package mrbayes-mpi-dbgsym listed in files list but not in control info
dpkg-genchanges: warning: package mrbayes-dbgsym listed in files list but not in control info
dpkg-genchanges: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build mrbayes-3.2.6+dfsg
dpkg-buildpackage: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 20160310-0522
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
mrbayes_3.2.6+dfsg-1+b1_armhf.changes:
--------------------------------------
Format: 1.8
Date: Wed, 30 Dec 2015 22:35:51 +0100
Source: mrbayes (3.2.6+dfsg-1)
Binary: mrbayes mrbayes-mpi mrbayes-doc
Binary-Only: yes
Architecture: armhf
Version: 3.2.6+dfsg-1+b1
Distribution: stretch-staging
Urgency: low
Maintainer: Raspbian nitrogen6x test autobuilder <root@raspbian.org>
Changed-By: Raspbian nitrogen6x test autobuilder <root@raspbian.org>
Description:
mrbayes - Bayesian Inference of Phylogeny
mrbayes-doc - Bayesian Inference of Phylogeny - manual
mrbayes-mpi - Bayesian Inference of Phylogeny - mpi version
Changes:
mrbayes (3.2.6+dfsg-1+b1) stretch-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
Checksums-Sha1:
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7a0f486cab592ec2ddb62c0944ed555981ad7f72 807020 mrbayes-mpi-dbgsym_3.2.6+dfsg-1+b1_armhf.deb
0ca8423cb349862fb7028dd09e67a4e23c2553e8 489046 mrbayes-mpi_3.2.6+dfsg-1+b1_armhf.deb
3075b59c4018d8aa2fac21d6dba93019d7d573b8 481486 mrbayes_3.2.6+dfsg-1+b1_armhf.deb
Checksums-Sha256:
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9ed14ce9df440e7c0ea98e62a19a8aba676a631ab6ecd941064af9ae03d2f889 807020 mrbayes-mpi-dbgsym_3.2.6+dfsg-1+b1_armhf.deb
e5d01f6fa4b7bc0551bbecbc78958969a0ed7ec94bf32f2852fa611136f42b16 489046 mrbayes-mpi_3.2.6+dfsg-1+b1_armhf.deb
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Files:
5070248edb0d9d3b239d2c88af217cfc 793176 debug extra mrbayes-dbgsym_3.2.6+dfsg-1+b1_armhf.deb
3cdad468bc5d518d797d24579812dd35 807020 debug extra mrbayes-mpi-dbgsym_3.2.6+dfsg-1+b1_armhf.deb
700d96a5fa459ea3db2be78b4fb326a8 489046 science optional mrbayes-mpi_3.2.6+dfsg-1+b1_armhf.deb
bf07c44e284fdf3434513aa9e9206a85 481486 science optional mrbayes_3.2.6+dfsg-1+b1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
mrbayes-dbgsym_3.2.6+dfsg-1+b1_armhf.deb
----------------------------------------
new debian package, version 2.0.
size 793176 bytes: control archive=496 bytes.
437 bytes, 13 lines control
106 bytes, 1 lines md5sums
Package: mrbayes-dbgsym
Source: mrbayes (3.2.6+dfsg-1)
Version: 3.2.6+dfsg-1+b1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 849
Depends: mrbayes (= 3.2.6+dfsg-1+b1)
Section: debug
Priority: extra
Homepage: http://mrbayes.csit.fsu.edu/
Description: Debug symbols for mrbayes
Auto-Built-Package: debug-symbols
Build-Ids: 81f2f6e845145779af67fa09f0ec2616be48097f
drwxr-xr-x root/root 0 2016-03-10 05:22 ./
drwxr-xr-x root/root 0 2016-03-10 05:22 ./usr/
drwxr-xr-x root/root 0 2016-03-10 05:22 ./usr/lib/
drwxr-xr-x root/root 0 2016-03-10 05:22 ./usr/lib/debug/
drwxr-xr-x root/root 0 2016-03-10 05:22 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2016-03-10 05:22 ./usr/lib/debug/.build-id/81/
-rw-r--r-- root/root 858260 2016-03-10 05:22 ./usr/lib/debug/.build-id/81/f2f6e845145779af67fa09f0ec2616be48097f.debug
drwxr-xr-x root/root 0 2016-03-10 05:22 ./usr/share/
drwxr-xr-x root/root 0 2016-03-10 05:22 ./usr/share/doc/
lrwxrwxrwx root/root 0 2016-03-10 05:22 ./usr/share/doc/mrbayes-dbgsym -> mrbayes
mrbayes-mpi-dbgsym_3.2.6+dfsg-1+b1_armhf.deb
--------------------------------------------
new debian package, version 2.0.
size 807020 bytes: control archive=500 bytes.
449 bytes, 13 lines control
106 bytes, 1 lines md5sums
Package: mrbayes-mpi-dbgsym
Source: mrbayes (3.2.6+dfsg-1)
Version: 3.2.6+dfsg-1+b1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 863
Depends: mrbayes-mpi (= 3.2.6+dfsg-1+b1)
Section: debug
Priority: extra
Homepage: http://mrbayes.csit.fsu.edu/
Description: Debug symbols for mrbayes-mpi
Auto-Built-Package: debug-symbols
Build-Ids: 276112c45bc2ab359f88c71bab4d469cca52132f
drwxr-xr-x root/root 0 2016-03-10 05:22 ./
drwxr-xr-x root/root 0 2016-03-10 05:22 ./usr/
drwxr-xr-x root/root 0 2016-03-10 05:22 ./usr/lib/
drwxr-xr-x root/root 0 2016-03-10 05:22 ./usr/lib/debug/
drwxr-xr-x root/root 0 2016-03-10 05:22 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2016-03-10 05:22 ./usr/lib/debug/.build-id/27/
-rw-r--r-- root/root 872892 2016-03-10 05:22 ./usr/lib/debug/.build-id/27/6112c45bc2ab359f88c71bab4d469cca52132f.debug
drwxr-xr-x root/root 0 2016-03-10 05:22 ./usr/share/
drwxr-xr-x root/root 0 2016-03-10 05:22 ./usr/share/doc/
lrwxrwxrwx root/root 0 2016-03-10 05:22 ./usr/share/doc/mrbayes-mpi-dbgsym -> mrbayes-mpi
mrbayes-mpi_3.2.6+dfsg-1+b1_armhf.deb
-------------------------------------
new debian package, version 2.0.
size 489046 bytes: control archive=989 bytes.
1019 bytes, 21 lines control
485 bytes, 7 lines md5sums
Package: mrbayes-mpi
Source: mrbayes (3.2.6+dfsg-1)
Version: 3.2.6+dfsg-1+b1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1406
Depends: libc6 (>= 2.7), libhmsbeagle1v5, libopenmpi1.10, libreadline6 (>= 6.0), mpi-default-bin
Suggests: mpi-default, mrbayes-doc
Section: science
Priority: optional
Homepage: http://mrbayes.csit.fsu.edu/
Description: Bayesian Inference of Phylogeny - mpi version
Bayesian inference of phylogeny is based upon a quantity called the posterior
probability distribution of trees, which is the probability of a tree
conditioned on the observations. The conditioning is accomplished using
Bayes's theorem. The posterior probability distribution of trees is
impossible to calculate analytically; instead, MrBayes uses a simulation
technique called Markov chain Monte Carlo (or MCMC) to approximate the
posterior probabilities of trees.
.
This package offers a binary compiled for parallel computation with MPI.
drwxr-xr-x root/root 0 2016-03-10 05:22 ./
drwxr-xr-x root/root 0 2016-03-10 05:22 ./usr/
drwxr-xr-x root/root 0 2016-03-10 05:22 ./usr/bin/
-rwxr-xr-x root/root 162 2015-12-30 21:41 ./usr/bin/mb-mpi
drwxr-xr-x root/root 0 2016-03-10 05:22 ./usr/lib/
drwxr-xr-x root/root 0 2016-03-10 05:22 ./usr/lib/mrbayes-mpi/
-rwxr-xr-x root/root 1419668 2016-03-10 05:22 ./usr/lib/mrbayes-mpi/mb-mpi
drwxr-xr-x root/root 0 2016-03-10 05:22 ./usr/share/
drwxr-xr-x root/root 0 2016-03-10 05:22 ./usr/share/doc/
drwxr-xr-x root/root 0 2016-03-10 05:22 ./usr/share/doc/mrbayes-mpi/
-rw-r--r-- root/root 348 2015-12-30 21:41 ./usr/share/doc/mrbayes-mpi/README.Debian
-rw-r--r-- root/root 226 2016-03-10 05:00 ./usr/share/doc/mrbayes-mpi/changelog.Debian.armhf.gz
-rw-r--r-- root/root 1890 2016-03-10 05:00 ./usr/share/doc/mrbayes-mpi/changelog.Debian.gz
-rw-r--r-- root/root 1482 2015-12-30 21:41 ./usr/share/doc/mrbayes-mpi/copyright
drwxr-xr-x root/root 0 2016-03-10 05:22 ./usr/share/man/
drwxr-xr-x root/root 0 2016-03-10 05:22 ./usr/share/man/man1/
-rw-r--r-- root/root 226 2016-03-10 05:22 ./usr/share/man/man1/mb-mpi.1.gz
mrbayes_3.2.6+dfsg-1+b1_armhf.deb
---------------------------------
new debian package, version 2.0.
size 481486 bytes: control archive=889 bytes.
878 bytes, 19 lines control
400 bytes, 6 lines md5sums
Package: mrbayes
Source: mrbayes (3.2.6+dfsg-1)
Version: 3.2.6+dfsg-1+b1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1379
Depends: libc6 (>= 2.7), libhmsbeagle1v5, libreadline6 (>= 6.0)
Suggests: mrbayes-doc
Section: science
Priority: optional
Homepage: http://mrbayes.csit.fsu.edu/
Description: Bayesian Inference of Phylogeny
Bayesian inference of phylogeny is based upon a quantity called the posterior
probability distribution of trees, which is the probability of a tree
conditioned on the observations. The conditioning is accomplished using
Bayes's theorem. The posterior probability distribution of trees is
impossible to calculate analytically; instead, MrBayes uses a simulation
technique called Markov chain Monte Carlo (or MCMC) to approximate the
posterior probabilities of trees.
drwxr-xr-x root/root 0 2016-03-10 05:22 ./
drwxr-xr-x root/root 0 2016-03-10 05:22 ./usr/
drwxr-xr-x root/root 0 2016-03-10 05:22 ./usr/bin/
-rwxr-xr-x root/root 1395052 2016-03-10 05:22 ./usr/bin/mb
drwxr-xr-x root/root 0 2016-03-10 05:22 ./usr/share/
drwxr-xr-x root/root 0 2016-03-10 05:22 ./usr/share/doc/
drwxr-xr-x root/root 0 2016-03-10 05:22 ./usr/share/doc/mrbayes/
-rw-r--r-- root/root 311 2015-12-30 21:41 ./usr/share/doc/mrbayes/README.Debian
-rw-r--r-- root/root 226 2016-03-10 05:00 ./usr/share/doc/mrbayes/changelog.Debian.armhf.gz
-rw-r--r-- root/root 1890 2016-03-10 05:00 ./usr/share/doc/mrbayes/changelog.Debian.gz
-rw-r--r-- root/root 1482 2015-12-30 21:41 ./usr/share/doc/mrbayes/copyright
drwxr-xr-x root/root 0 2016-03-10 05:22 ./usr/share/man/
drwxr-xr-x root/root 0 2016-03-10 05:22 ./usr/share/man/man1/
-rw-r--r-- root/root 206 2016-03-10 05:22 ./usr/share/man/man1/mb.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 33344
Build-Time: 1318
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 444
Job: mrbayes_3.2.6+dfsg-1
Machine Architecture: armhf
Package: mrbayes
Package-Time: 1809
Source-Version: 3.2.6+dfsg-1
Space: 33344
Status: successful
Version: 3.2.6+dfsg-1+b1
--------------------------------------------------------------------------------
Finished at 20160310-0522
Build needed 00:30:09, 33344k disc space