mrbayes →
3.2.5+dfsg-1+b1 →
armhf → 2015-09-09 13:14:37
sbuild (Debian sbuild) 0.65.2 (24 Mar 2015) on testwandboard
╔══════════════════════════════════════════════════════════════════════════════╗
║ mrbayes 3.2.5+dfsg-1+b1 (armhf) 09 Sep 2015 12:46 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: mrbayes
Version: 3.2.5+dfsg-1+b1
Source Version: 3.2.5+dfsg-1
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'build/mrbayes-KTE9iq/mrbayes-3.2.5+dfsg' with '«PKGBUILDDIR»'
I: NOTICE: Log filtering will replace 'build/mrbayes-KTE9iq' with '«BUILDDIR»'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-100ad3fa-a4e3-4587-8d3d-44dad8d5a692' with '«CHROOT»'
┌──────────────────────────────────────────────────────────────────────────────┐
│ Update chroot │
└──────────────────────────────────────────────────────────────────────────────┘
Get:1 http://172.17.0.1 stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1 stretch-staging/main Sources [8313 kB]
Get:3 http://172.17.0.1 stretch-staging/main armhf Packages [10.2 MB]
Ign http://172.17.0.1 stretch-staging/main Translation-en
Fetched 18.5 MB in 1min 11s (258 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Fetch source files │
└──────────────────────────────────────────────────────────────────────────────┘
Check APT
─────────
Checking available source versions...
Download source files with APT
──────────────────────────────
Reading package lists...
Building dependency tree...
Reading state information...
NOTICE: 'mrbayes' packaging is maintained in the 'Svn' version control system at:
svn://anonscm.debian.org/debian-med/trunk/packages/mrbayes/trunk/
Need to get 2648 kB of source archives.
Get:1 http://172.17.0.1/private/ stretch-staging/main mrbayes 3.2.5+dfsg-1 (dsc) [2405 B]
Get:2 http://172.17.0.1/private/ stretch-staging/main mrbayes 3.2.5+dfsg-1 (tar) [2640 kB]
Get:3 http://172.17.0.1/private/ stretch-staging/main mrbayes 3.2.5+dfsg-1 (diff) [6336 B]
Fetched 2648 kB in 7s (340 kB/s)
Download complete and in download only mode
Check architectures
───────────────────
Check dependencies
──────────────────
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/«BUILDDIR»/resolver-oXhN05/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Ign file: ./ InRelease
Get:1 file: ./ Release.gpg [299 B]
Get:2 file: ./ Release [2119 B]
Ign file: ./ Translation-en
Reading package lists...
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install core build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 1 newly installed, 0 to remove and 12 not upgraded.
Need to get 0 B/766 B of archives.
After this operation, 0 B of additional disk space will be used.
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 12820 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
Merged Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), libreadline-dev, mpi-default-dev, libhmsbeagle-dev (<< 2.1-1) | libhmsbeagle-dev (>= 2.1-2), autoconf, automake
Filtered Build-Depends: libc6-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), libreadline-dev, mpi-default-dev, libhmsbeagle-dev (<< 2.1-1) | libhmsbeagle-dev (>= 2.1-2), autoconf, automake
dpkg-deb: building package 'sbuild-build-depends-mrbayes-dummy' in '/«BUILDDIR»/resolver-b7r_OA/apt_archive/sbuild-build-depends-mrbayes-dummy.deb'.
OK
Ign file: ./ InRelease
Get:1 file: ./ Release.gpg [299 B]
Get:2 file: ./ Release [2119 B]
Ign file: ./ Translation-en
Reading package lists...
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install mrbayes build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
autoconf automake autotools-dev bsdmainutils debhelper file gettext
gettext-base groff-base intltool-debian libasprintf0v5 libcr0 libcroco3
libffi6 libgfortran3 libglib2.0-0 libhmsbeagle-dev libhmsbeagle1v5
libhwloc-dev libhwloc5 libibverbs-dev libibverbs1 libltdl-dev libltdl7
libmagic1 libopenmpi-dev libopenmpi1.6 libpipeline1 libreadline-dev
libreadline6-dev libsigsegv2 libtinfo-dev libunistring0 libxml2 m4 man-db
mpi-default-dev openmpi-common po-debconf
Suggested packages:
autoconf-archive gnu-standards autoconf-doc libtool wamerican wordlist whois
vacation dh-make gettext-doc groff blcr-dkms libhwloc-contrib-plugins
libtool-doc readline-doc less www-browser libmail-box-perl
Recommended packages:
curl wget lynx-cur autopoint libasprintf-dev libgettextpo-dev
libglib2.0-data shared-mime-info xdg-user-dirs libhwloc-plugins xml-core
libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autotools-dev bsdmainutils debhelper file gettext
gettext-base groff-base intltool-debian libasprintf0v5 libcr0 libcroco3
libffi6 libgfortran3 libglib2.0-0 libhmsbeagle-dev libhmsbeagle1v5
libhwloc-dev libhwloc5 libibverbs-dev libibverbs1 libltdl-dev libltdl7
libmagic1 libopenmpi-dev libopenmpi1.6 libpipeline1 libreadline-dev
libreadline6-dev libsigsegv2 libtinfo-dev libunistring0 libxml2 m4 man-db
mpi-default-dev openmpi-common po-debconf sbuild-build-depends-mrbayes-dummy
0 upgraded, 40 newly installed, 0 to remove and 12 not upgraded.
Need to get 12.9 MB/12.9 MB of archives.
After this operation, 42.9 MB of additional disk space will be used.
Get:1 http://172.17.0.1/private/ stretch-staging/main groff-base armhf 1.22.3-1 [1085 kB]
Get:2 http://172.17.0.1/private/ stretch-staging/main bsdmainutils armhf 9.0.6 [177 kB]
Get:3 http://172.17.0.1/private/ stretch-staging/main libpipeline1 armhf 1.4.1-1 [23.9 kB]
Get:4 http://172.17.0.1/private/ stretch-staging/main man-db armhf 2.7.2-1 [973 kB]
Get:5 http://172.17.0.1/private/ stretch-staging/main libasprintf0v5 armhf 0.19.5.1-1 [32.0 kB]
Get:6 http://172.17.0.1/private/ stretch-staging/main libmagic1 armhf 1:5.22+15-2 [244 kB]
Get:7 http://172.17.0.1/private/ stretch-staging/main libxml2 armhf 2.9.1+dfsg1-5 [703 kB]
Get:8 http://172.17.0.1/private/ stretch-staging/main libffi6 armhf 3.2.1-3 [18.5 kB]
Get:9 http://172.17.0.1/private/ stretch-staging/main libglib2.0-0 armhf 2.44.1-1.1 [2312 kB]
Get:10 http://172.17.0.1/private/ stretch-staging/main libcroco3 armhf 0.6.8-3 [121 kB]
Get:11 http://172.17.0.1/private/ stretch-staging/main libgfortran3 armhf 5.2.1-16+rpi1 [154 kB]
Get:12 http://172.17.0.1/private/ stretch-staging/main libltdl7 armhf 2.4.2-1.11 [42.5 kB]
Get:13 http://172.17.0.1/private/ stretch-staging/main libsigsegv2 armhf 2.10-4 [28.2 kB]
Get:14 http://172.17.0.1/private/ stretch-staging/main libunistring0 armhf 0.9.3-5.2 [253 kB]
Get:15 http://172.17.0.1/private/ stretch-staging/main libhwloc5 armhf 1.11.0-1 [73.5 kB]
Get:16 http://172.17.0.1/private/ stretch-staging/main file armhf 1:5.22+15-2 [59.9 kB]
Get:17 http://172.17.0.1/private/ stretch-staging/main gettext-base armhf 0.19.5.1-1 [118 kB]
Get:18 http://172.17.0.1/private/ stretch-staging/main m4 armhf 1.4.17-4 [238 kB]
Get:19 http://172.17.0.1/private/ stretch-staging/main autoconf all 2.69-9 [338 kB]
Get:20 http://172.17.0.1/private/ stretch-staging/main autotools-dev all 20140911.1 [70.5 kB]
Get:21 http://172.17.0.1/private/ stretch-staging/main automake all 1:1.15-3 [735 kB]
Get:22 http://172.17.0.1/private/ stretch-staging/main gettext armhf 0.19.5.1-1 [1386 kB]
Get:23 http://172.17.0.1/private/ stretch-staging/main intltool-debian all 0.35.0+20060710.2 [25.9 kB]
Get:24 http://172.17.0.1/private/ stretch-staging/main po-debconf all 1.0.18 [248 kB]
Get:25 http://172.17.0.1/private/ stretch-staging/main debhelper all 9.20150811 [817 kB]
Get:26 http://172.17.0.1/private/ stretch-staging/main libcr0 armhf 0.8.5-2.2 [30.0 kB]
Get:27 http://172.17.0.1/private/ stretch-staging/main libhmsbeagle1v5 armhf 2.1.2+20150609-1.1 [48.0 kB]
Get:28 http://172.17.0.1/private/ stretch-staging/main libhmsbeagle-dev armhf 2.1.2+20150609-1.1 [149 kB]
Get:29 http://172.17.0.1/private/ stretch-staging/main libltdl-dev armhf 2.4.2-1.11 [155 kB]
Get:30 http://172.17.0.1/private/ stretch-staging/main libtinfo-dev armhf 6.0+20150810-1 [65.8 kB]
Get:31 http://172.17.0.1/private/ stretch-staging/main libreadline6-dev armhf 6.3-8 [105 kB]
Get:32 http://172.17.0.1/private/ stretch-staging/main libreadline-dev armhf 6.3-8 [994 B]
Get:33 http://172.17.0.1/private/ stretch-staging/main libhwloc-dev armhf 1.11.0-1 [131 kB]
Get:34 http://172.17.0.1/private/ stretch-staging/main libibverbs1 armhf 1.1.8-1.1 [28.5 kB]
Get:35 http://172.17.0.1/private/ stretch-staging/main libibverbs-dev armhf 1.1.8-1.1 [82.6 kB]
Get:36 http://172.17.0.1/private/ stretch-staging/main libopenmpi1.6 armhf 1.6.5-10+rpi1 [1240 kB]
Get:37 http://172.17.0.1/private/ stretch-staging/main openmpi-common all 1.6.5-10+rpi1 [111 kB]
Get:38 http://172.17.0.1/private/ stretch-staging/main libopenmpi-dev armhf 1.6.5-10+rpi1 [447 kB]
Get:39 http://172.17.0.1/private/ stretch-staging/main mpi-default-dev armhf 1.0.2+nmu2 [3984 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 12.9 MB in 37s (345 kB/s)
Selecting previously unselected package groff-base.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 12820 files and directories currently installed.)
Preparing to unpack .../groff-base_1.22.3-1_armhf.deb ...
Unpacking groff-base (1.22.3-1) ...
Selecting previously unselected package bsdmainutils.
Preparing to unpack .../bsdmainutils_9.0.6_armhf.deb ...
Unpacking bsdmainutils (9.0.6) ...
Selecting previously unselected package libpipeline1:armhf.
Preparing to unpack .../libpipeline1_1.4.1-1_armhf.deb ...
Unpacking libpipeline1:armhf (1.4.1-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../man-db_2.7.2-1_armhf.deb ...
Unpacking man-db (2.7.2-1) ...
Selecting previously unselected package libasprintf0v5:armhf.
Preparing to unpack .../libasprintf0v5_0.19.5.1-1_armhf.deb ...
Unpacking libasprintf0v5:armhf (0.19.5.1-1) ...
Selecting previously unselected package libmagic1:armhf.
Preparing to unpack .../libmagic1_1%3a5.22+15-2_armhf.deb ...
Unpacking libmagic1:armhf (1:5.22+15-2) ...
Selecting previously unselected package libxml2:armhf.
Preparing to unpack .../libxml2_2.9.1+dfsg1-5_armhf.deb ...
Unpacking libxml2:armhf (2.9.1+dfsg1-5) ...
Selecting previously unselected package libffi6:armhf.
Preparing to unpack .../libffi6_3.2.1-3_armhf.deb ...
Unpacking libffi6:armhf (3.2.1-3) ...
Selecting previously unselected package libglib2.0-0:armhf.
Preparing to unpack .../libglib2.0-0_2.44.1-1.1_armhf.deb ...
Unpacking libglib2.0-0:armhf (2.44.1-1.1) ...
Selecting previously unselected package libcroco3:armhf.
Preparing to unpack .../libcroco3_0.6.8-3_armhf.deb ...
Unpacking libcroco3:armhf (0.6.8-3) ...
Selecting previously unselected package libgfortran3:armhf.
Preparing to unpack .../libgfortran3_5.2.1-16+rpi1_armhf.deb ...
Unpacking libgfortran3:armhf (5.2.1-16+rpi1) ...
Selecting previously unselected package libltdl7:armhf.
Preparing to unpack .../libltdl7_2.4.2-1.11_armhf.deb ...
Unpacking libltdl7:armhf (2.4.2-1.11) ...
Selecting previously unselected package libsigsegv2:armhf.
Preparing to unpack .../libsigsegv2_2.10-4_armhf.deb ...
Unpacking libsigsegv2:armhf (2.10-4) ...
Selecting previously unselected package libunistring0:armhf.
Preparing to unpack .../libunistring0_0.9.3-5.2_armhf.deb ...
Unpacking libunistring0:armhf (0.9.3-5.2) ...
Selecting previously unselected package libhwloc5:armhf.
Preparing to unpack .../libhwloc5_1.11.0-1_armhf.deb ...
Unpacking libhwloc5:armhf (1.11.0-1) ...
Selecting previously unselected package file.
Preparing to unpack .../file_1%3a5.22+15-2_armhf.deb ...
Unpacking file (1:5.22+15-2) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../gettext-base_0.19.5.1-1_armhf.deb ...
Unpacking gettext-base (0.19.5.1-1) ...
Selecting previously unselected package m4.
Preparing to unpack .../archives/m4_1.4.17-4_armhf.deb ...
Unpacking m4 (1.4.17-4) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../autoconf_2.69-9_all.deb ...
Unpacking autoconf (2.69-9) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../autotools-dev_20140911.1_all.deb ...
Unpacking autotools-dev (20140911.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../automake_1%3a1.15-3_all.deb ...
Unpacking automake (1:1.15-3) ...
Selecting previously unselected package gettext.
Preparing to unpack .../gettext_0.19.5.1-1_armhf.deb ...
Unpacking gettext (0.19.5.1-1) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../intltool-debian_0.35.0+20060710.2_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.2) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../po-debconf_1.0.18_all.deb ...
Unpacking po-debconf (1.0.18) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../debhelper_9.20150811_all.deb ...
Unpacking debhelper (9.20150811) ...
Selecting previously unselected package libcr0.
Preparing to unpack .../libcr0_0.8.5-2.2_armhf.deb ...
Unpacking libcr0 (0.8.5-2.2) ...
Selecting previously unselected package libhmsbeagle1v5.
Preparing to unpack .../libhmsbeagle1v5_2.1.2+20150609-1.1_armhf.deb ...
Unpacking libhmsbeagle1v5 (2.1.2+20150609-1.1) ...
Selecting previously unselected package libhmsbeagle-dev.
Preparing to unpack .../libhmsbeagle-dev_2.1.2+20150609-1.1_armhf.deb ...
Unpacking libhmsbeagle-dev (2.1.2+20150609-1.1) ...
Selecting previously unselected package libltdl-dev:armhf.
Preparing to unpack .../libltdl-dev_2.4.2-1.11_armhf.deb ...
Unpacking libltdl-dev:armhf (2.4.2-1.11) ...
Selecting previously unselected package libtinfo-dev:armhf.
Preparing to unpack .../libtinfo-dev_6.0+20150810-1_armhf.deb ...
Unpacking libtinfo-dev:armhf (6.0+20150810-1) ...
Selecting previously unselected package libreadline6-dev:armhf.
Preparing to unpack .../libreadline6-dev_6.3-8_armhf.deb ...
Unpacking libreadline6-dev:armhf (6.3-8) ...
Selecting previously unselected package libreadline-dev:armhf.
Preparing to unpack .../libreadline-dev_6.3-8_armhf.deb ...
Unpacking libreadline-dev:armhf (6.3-8) ...
Selecting previously unselected package libhwloc-dev:armhf.
Preparing to unpack .../libhwloc-dev_1.11.0-1_armhf.deb ...
Unpacking libhwloc-dev:armhf (1.11.0-1) ...
Selecting previously unselected package libibverbs1.
Preparing to unpack .../libibverbs1_1.1.8-1.1_armhf.deb ...
Unpacking libibverbs1 (1.1.8-1.1) ...
Selecting previously unselected package libibverbs-dev.
Preparing to unpack .../libibverbs-dev_1.1.8-1.1_armhf.deb ...
Unpacking libibverbs-dev (1.1.8-1.1) ...
Selecting previously unselected package libopenmpi1.6.
Preparing to unpack .../libopenmpi1.6_1.6.5-10+rpi1_armhf.deb ...
Unpacking libopenmpi1.6 (1.6.5-10+rpi1) ...
Selecting previously unselected package openmpi-common.
Preparing to unpack .../openmpi-common_1.6.5-10+rpi1_all.deb ...
Unpacking openmpi-common (1.6.5-10+rpi1) ...
Selecting previously unselected package libopenmpi-dev.
Preparing to unpack .../libopenmpi-dev_1.6.5-10+rpi1_armhf.deb ...
Unpacking libopenmpi-dev (1.6.5-10+rpi1) ...
Selecting previously unselected package mpi-default-dev.
Preparing to unpack .../mpi-default-dev_1.0.2+nmu2_armhf.deb ...
Unpacking mpi-default-dev (1.0.2+nmu2) ...
Selecting previously unselected package sbuild-build-depends-mrbayes-dummy.
Preparing to unpack .../sbuild-build-depends-mrbayes-dummy.deb ...
Unpacking sbuild-build-depends-mrbayes-dummy (0.invalid.0) ...
Setting up groff-base (1.22.3-1) ...
Setting up bsdmainutils (9.0.6) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libpipeline1:armhf (1.4.1-1) ...
Setting up man-db (2.7.2-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libasprintf0v5:armhf (0.19.5.1-1) ...
Setting up libmagic1:armhf (1:5.22+15-2) ...
Setting up libxml2:armhf (2.9.1+dfsg1-5) ...
Setting up libffi6:armhf (3.2.1-3) ...
Setting up libglib2.0-0:armhf (2.44.1-1.1) ...
No schema files found: doing nothing.
Setting up libcroco3:armhf (0.6.8-3) ...
Setting up libgfortran3:armhf (5.2.1-16+rpi1) ...
Setting up libltdl7:armhf (2.4.2-1.11) ...
Setting up libsigsegv2:armhf (2.10-4) ...
Setting up libunistring0:armhf (0.9.3-5.2) ...
Setting up libhwloc5:armhf (1.11.0-1) ...
Setting up file (1:5.22+15-2) ...
Setting up gettext-base (0.19.5.1-1) ...
Setting up m4 (1.4.17-4) ...
Setting up autoconf (2.69-9) ...
Setting up autotools-dev (20140911.1) ...
Setting up automake (1:1.15-3) ...
update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode
Setting up gettext (0.19.5.1-1) ...
Setting up intltool-debian (0.35.0+20060710.2) ...
Setting up po-debconf (1.0.18) ...
Setting up debhelper (9.20150811) ...
Setting up libcr0 (0.8.5-2.2) ...
Setting up libhmsbeagle1v5 (2.1.2+20150609-1.1) ...
Setting up libhmsbeagle-dev (2.1.2+20150609-1.1) ...
Setting up libltdl-dev:armhf (2.4.2-1.11) ...
Setting up libtinfo-dev:armhf (6.0+20150810-1) ...
Setting up libreadline6-dev:armhf (6.3-8) ...
Setting up libreadline-dev:armhf (6.3-8) ...
Setting up libhwloc-dev:armhf (1.11.0-1) ...
Setting up libibverbs1 (1.1.8-1.1) ...
Setting up libibverbs-dev (1.1.8-1.1) ...
Setting up libopenmpi1.6 (1.6.5-10+rpi1) ...
Setting up openmpi-common (1.6.5-10+rpi1) ...
Setting up libopenmpi-dev (1.6.5-10+rpi1) ...
update-alternatives: using /usr/lib/openmpi/include to provide /usr/include/mpi (mpi) in auto mode
Setting up mpi-default-dev (1.0.2+nmu2) ...
Setting up sbuild-build-depends-mrbayes-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.19-19) ...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build environment │
└──────────────────────────────────────────────────────────────────────────────┘
Kernel: Linux 3.19.0-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.25.1-1 dpkg-dev_1.18.2 g++-4.9_4.9.3-4 g++-5_5.2.1-16+rpi1 gcc-4.9_4.9.3-4 gcc-5_5.2.1-16+rpi1 libc6-dev_2.19-19 libstdc++-4.9-dev_4.9.3-4 libstdc++-5-dev_5.2.1-16+rpi1 libstdc++6_5.2.1-16+rpi1 linux-libc-dev_3.16.7-ckt4-1+rpi1+b2
Package versions: acl_2.2.52-2 adduser_3.113+nmu3 apt_1.0.9.10 autoconf_2.69-9 automake_1:1.15-3 autotools-dev_20140911.1 base-files_9.2+rpi1 base-passwd_3.5.38 bash_4.3-13 binutils_2.25.1-1 bsdmainutils_9.0.6 bsdutils_1:2.26.2-9 build-essential_11.7 bzip2_1.0.6-8 coreutils_8.23-4 cpio_2.11+dfsg-4.1 cpp_4:5.2.1-4+rpi1 cpp-4.9_4.9.3-4 cpp-5_5.2.1-16+rpi1 dash_0.5.7-4 debconf_1.5.57 debfoster_2.7-2 debhelper_9.20150811 debianutils_4.5.1 diffutils_1:3.3-1 dmsetup_2:1.02.104-1 dpkg_1.18.2 dpkg-dev_1.18.2 e2fslibs_1.42.13-1 e2fsprogs_1.42.13-1 fakeroot_1.20.2-1 file_1:5.22+15-2 findutils_4.4.2-9 g++_4:5.2.1-4+rpi1 g++-4.9_4.9.3-4 g++-5_5.2.1-16+rpi1 gcc_4:5.2.1-4+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.4-4 gcc-4.9_4.9.3-4 gcc-4.9-base_4.9.3-4 gcc-5_5.2.1-16+rpi1 gcc-5-base_5.2.1-16+rpi1 gettext_0.19.5.1-1 gettext-base_0.19.5.1-1 gnupg_1.4.19-5 gpgv_1.4.19-5 grep_2.21-2 groff-base_1.22.3-1 gzip_1.6-4 hostname_3.15 init_1.23 init-system-helpers_1.23 initramfs-tools_0.120 initscripts_2.88dsf-59.2 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.2 klibc-utils_2.0.4-2+rpi1 kmod_21-1 libacl1_2.2.52-2 libapparmor1_2.9.2-3 libapt-pkg4.12_1.0.9.10 libasan1_4.9.3-4 libasan2_5.2.1-16+rpi1 libasprintf0v5_0.19.5.1-1 libatomic1_5.2.1-16+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.4.4-1 libaudit1_1:2.4.4-1 libblkid1_2.26.2-9 libbz2-1.0_1.0.6-8 libc-bin_2.19-19 libc-dev-bin_2.19-19 libc6_2.19-19 libc6-dev_2.19-19 libcap2_1:2.24-11 libcap2-bin_1:2.24-11 libcc1-0_5.2.1-16+rpi1 libcloog-isl4_0.18.3-1 libcomerr2_1.42.13-1 libcr0_0.8.5-2.2 libcroco3_0.6.8-3 libcryptsetup4_2:1.6.6-5 libdb5.3_5.3.28-9 libdbus-1-3_1.8.20-1 libdebconfclient0_0.195 libdevmapper1.02.1_2:1.02.104-1 libdpkg-perl_1.18.2 libdrm2_2.4.64-1 libfakeroot_1.20.2-1 libfdisk1_2.26.2-9 libffi6_3.2.1-3 libgc1c2_1:7.2d-6.4 libgcc-4.9-dev_4.9.3-4 libgcc-5-dev_5.2.1-16+rpi1 libgcc1_1:5.2.1-16+rpi1 libgcrypt20_1.6.3-2 libgdbm3_1.8.3-13.1 libgfortran3_5.2.1-16+rpi1 libglib2.0-0_2.44.1-1.1 libgmp10_2:6.0.0+dfsg-7+rpi1 libgomp1_5.2.1-16+rpi1 libgpg-error0_1.19-2 libhmsbeagle-dev_2.1.2+20150609-1.1 libhmsbeagle1v5_2.1.2+20150609-1.1 libhwloc-dev_1.11.0-1 libhwloc5_1.11.0-1 libibverbs-dev_1.1.8-1.1 libibverbs1_1.1.8-1.1 libisl13_0.14-2 libklibc_2.0.4-2+rpi1 libkmod2_21-1 liblocale-gettext-perl_1.05-9 libltdl-dev_2.4.2-1.11 libltdl7_2.4.2-1.11 liblzma5_5.1.1alpha+20120614-2.1 libmagic1_1:5.22+15-2 libmount1_2.26.2-9 libmpc3_1.0.3-1 libmpfr4_3.1.3-1 libncurses5_6.0+20150810-1 libncursesw5_6.0+20150810-1 libnih-dbus1_1.0.3-4.3 libnih1_1.0.3-4.3 libopenmpi-dev_1.6.5-10+rpi1 libopenmpi1.6_1.6.5-10+rpi1 libpam-modules_1.1.8-3.1 libpam-modules-bin_1.1.8-3.1 libpam-runtime_1.1.8-3.1 libpam0g_1.1.8-3.1 libpcre3_2:8.35-7 libpipeline1_1.4.1-1 libpng12-0_1.2.50-2 libprocps3_2:3.3.9-9 libprocps4_2:3.3.10-2 libreadline-dev_6.3-8 libreadline6_6.3-8 libreadline6-dev_6.3-8 libseccomp2_2.2.3-1 libselinux1_2.3-2 libsemanage-common_2.3-1 libsemanage1_2.3-1 libsepol1_2.3-2 libsigsegv2_2.10-4 libslang2_2.3.0-2 libsmartcols1_2.26.2-9 libss2_1.42.13-1 libstdc++-4.9-dev_4.9.3-4 libstdc++-5-dev_5.2.1-16+rpi1 libstdc++6_5.2.1-16+rpi1 libsystemd0_225-1 libtext-charwidth-perl_0.04-7+b4 libtext-iconv-perl_1.7-5+b5 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_2.3000-2 libtinfo-dev_6.0+20150810-1 libtinfo5_6.0+20150810-1 libubsan0_5.2.1-16+rpi1 libudev1_225-1 libunistring0_0.9.3-5.2 libusb-0.1-4_2:0.1.12-25 libustr-1.0-1_1.0.4-5 libuuid1_2.26.2-9 libxml2_2.9.1+dfsg1-5 linux-libc-dev_3.16.7-ckt4-1+rpi1+b2 login_1:4.2-3 lsb-base_4.1+Debian13+rpi1+nmu1 m4_1.4.17-4 make_4.0-8.2 makedev_2.3.1-93 man-db_2.7.2-1 mawk_1.3.3-17 mount_2.26.2-9 mountall_2.54 mpi-default-dev_1.0.2+nmu2 multiarch-support_2.19-19 ncurses-base_6.0+20150810-1 ncurses-bin_6.0+20150810-1 openmpi-common_1.6.5-10+rpi1 passwd_1:4.2-3 patch_2.7.5-1 perl_5.20.2-6 perl-base_5.20.2-6 perl-modules_5.20.2-6 plymouth_0.9.0-9 po-debconf_1.0.18 procps_2:3.3.10-2 raspbian-archive-keyring_20120528.2 readline-common_6.3-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-mrbayes-dummy_0.invalid.0 sed_4.2.2-6.1 sensible-utils_0.0.9 startpar_0.59-3 systemd_225-1 systemd-sysv_225-1 sysv-rc_2.88dsf-59.2 sysvinit-utils_2.88dsf-59.2 tar_1.28-1 tzdata_2015f-1 udev_225-1 util-linux_2.26.2-9 xz-utils_5.1.1alpha+20120614-2.1 zlib1g_1:1.2.8.dfsg-2
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
└──────────────────────────────────────────────────────────────────────────────┘
Unpack source
─────────────
gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Mon Jun 29 07:02:40 2015 UTC using RSA key ID D1C646D1
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./mrbayes_3.2.5+dfsg-1.dsc
dpkg-source: info: extracting mrbayes in mrbayes-3.2.5+dfsg
dpkg-source: info: unpacking mrbayes_3.2.5+dfsg.orig.tar.xz
dpkg-source: info: unpacking mrbayes_3.2.5+dfsg-1.debian.tar.xz
dpkg-source: info: applying as-needed.patch
dpkg-source: info: applying ldlibs.patch
Check disc space
────────────────
Sufficient free space for build
Hack binNMU version
───────────────────
Created changelog entry for binNMU version 3.2.5+dfsg-1+b1
User Environment
────────────────
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LOGNAME=root
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-100ad3fa-a4e3-4587-8d3d-44dad8d5a692
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd
dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package mrbayes
dpkg-buildpackage: source version 3.2.5+dfsg-1+b1
dpkg-buildpackage: source distribution stretch-staging
dpkg-source --before-build mrbayes-3.2.5+dfsg
dpkg-buildpackage: host architecture armhf
fakeroot debian/rules clean
dh clean --sourcedirectory=src
dh_testdir -O--sourcedirectory=src
debian/rules override_dh_auto_clean
make[1]: Entering directory '/«BUILDDIR»/mrbayes-3.2.5+dfsg'
( cd src ; /usr/bin/make -f Makefile.in distclean )
make[2]: Entering directory '/«BUILDDIR»/mrbayes-3.2.5+dfsg/src'
rm -f *.o *~ mb
rm -rf Makefile config.log config.status config.h *.cache
make[2]: Leaving directory '/«BUILDDIR»/mrbayes-3.2.5+dfsg/src'
rm -f src/configure
rm -f mb mb-mpi src/mb
make[1]: Leaving directory '/«BUILDDIR»/mrbayes-3.2.5+dfsg'
dh_clean -O--sourcedirectory=src
debian/rules build-arch
dh build-arch --sourcedirectory=src
dh_testdir -a -O--sourcedirectory=src
debian/rules override_dh_auto_configure
make[1]: Entering directory '/«BUILDDIR»/mrbayes-3.2.5+dfsg'
#Configure for MPI at first
( cd src ; autoconf )
dh_auto_configure -- --with-beagle=/usr --enable-mpi=yes --enable-debug=yes
./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --libexecdir=\${prefix}/lib/arm-linux-gnueabihf --disable-maintainer-mode --disable-dependency-tracking --with-beagle=/usr --enable-mpi=yes --enable-debug=yes
configure: WARNING: unrecognized options: --disable-silent-rules, --disable-maintainer-mode, --disable-dependency-tracking
configure: NOTICE: Because the variable $CFLAGS is defined in your shell, the
default MrBayes flags will be overridden. To ensure optimal performance, please check
that your $CFLAGS variable is set correctly. Alternatively, unset the $CFLAGS
variable in your shell in order to use the default MrBayes compiler options.
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for exp in -lm... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking for mpicc... yes
checking for SSE support... no
checking for /usr/include/libhmsbeagle/libhmsbeagle/beagle.h... no
checking for /usr/include/libhmsbeagle-1/libhmsbeagle/beagle.h... yes
checking for /usr/include/libhmsbeagle/libhmsbeagle/platform.h... no
checking for /usr/include/libhmsbeagle-1/libhmsbeagle/platform.h... yes
checking for /usr/lib... yes
checking for readline in -lreadline... yes
checking for rl_completion_matches function... yes
checking for 32 or 64 bits cpu... 32
configure: creating ./config.status
config.status: creating Makefile
config.status: creating config.h
configure: WARNING: unrecognized options: --disable-silent-rules, --disable-maintainer-mode, --disable-dependency-tracking
make[1]: Leaving directory '/«BUILDDIR»/mrbayes-3.2.5+dfsg'
debian/rules override_dh_auto_build
make[1]: Entering directory '/«BUILDDIR»/mrbayes-3.2.5+dfsg'
# build mb-mpi (from initial config)
LIBS="-Wl,--as-needed" dh_auto_build
make -j1
make[2]: Entering directory '/«BUILDDIR»/mrbayes-3.2.5+dfsg/src'
mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o bayes.o bayes.c
mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o command.o command.c
mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o model.o model.c
mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o mcmc.o mcmc.c
mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o likelihood.o likelihood.c
mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o proposal.o proposal.c
mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o sumpt.o sumpt.c
mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o utils.o utils.c
mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o mbbeagle.o mbbeagle.c
mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o best.o best.c
mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -o mb bayes.o command.o model.o mcmc.o likelihood.o proposal.o sumpt.o utils.o mbbeagle.o best.o -Wl,-z,relro -L/usr/lib -lhmsbeagle -lreadline -lm
make[2]: Leaving directory '/«BUILDDIR»/mrbayes-3.2.5+dfsg/src'
mv src/mb ./mb-mpi
# Now - build mb
( cd src ; make clean )
make[2]: Entering directory '/«BUILDDIR»/mrbayes-3.2.5+dfsg/src'
rm -f *.o *~ mb
make[2]: Leaving directory '/«BUILDDIR»/mrbayes-3.2.5+dfsg/src'
dh_auto_configure -- --with-beagle=/usr --enable-mpi=no --enable-debug=yes
./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --libexecdir=\${prefix}/lib/arm-linux-gnueabihf --disable-maintainer-mode --disable-dependency-tracking --with-beagle=/usr --enable-mpi=no --enable-debug=yes
configure: WARNING: unrecognized options: --disable-silent-rules, --disable-maintainer-mode, --disable-dependency-tracking
configure: NOTICE: Because the variable $CFLAGS is defined in your shell, the
default MrBayes flags will be overridden. To ensure optimal performance, please check
that your $CFLAGS variable is set correctly. Alternatively, unset the $CFLAGS
variable in your shell in order to use the default MrBayes compiler options.
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for exp in -lm... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking for SSE support... no
checking for /usr/include/libhmsbeagle/libhmsbeagle/beagle.h... no
checking for /usr/include/libhmsbeagle-1/libhmsbeagle/beagle.h... yes
checking for /usr/include/libhmsbeagle/libhmsbeagle/platform.h... no
checking for /usr/include/libhmsbeagle-1/libhmsbeagle/platform.h... yes
checking for /usr/lib... yes
checking for readline in -lreadline... yes
checking for rl_completion_matches function... yes
checking for 32 or 64 bits cpu... 32
configure: creating ./config.status
config.status: creating Makefile
config.status: creating config.h
configure: WARNING: unrecognized options: --disable-silent-rules, --disable-maintainer-mode, --disable-dependency-tracking
LIBS="-Wl,--as-needed" dh_auto_build
make -j1
make[2]: Entering directory '/«BUILDDIR»/mrbayes-3.2.5+dfsg/src'
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o bayes.o bayes.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o command.o command.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o model.o model.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o mcmc.o mcmc.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o likelihood.o likelihood.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o proposal.o proposal.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o sumpt.o sumpt.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o utils.o utils.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o mbbeagle.o mbbeagle.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o best.o best.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -o mb bayes.o command.o model.o mcmc.o likelihood.o proposal.o sumpt.o utils.o mbbeagle.o best.o -Wl,-z,relro -L/usr/lib -lhmsbeagle -lreadline -lm
make[2]: Leaving directory '/«BUILDDIR»/mrbayes-3.2.5+dfsg/src'
mv src/mb .
make[1]: Leaving directory '/«BUILDDIR»/mrbayes-3.2.5+dfsg'
dh_auto_test -a -O--sourcedirectory=src
fakeroot debian/rules binary-arch
dh binary-arch --sourcedirectory=src
dh_testroot -a -O--sourcedirectory=src
dh_prep -a -O--sourcedirectory=src
debian/rules override_dh_auto_install
make[1]: Entering directory '/«BUILDDIR»/mrbayes-3.2.5+dfsg'
echo "Do not try to install to /usr/local/bin"
Do not try to install to /usr/local/bin
make[1]: Leaving directory '/«BUILDDIR»/mrbayes-3.2.5+dfsg'
dh_install -a -O--sourcedirectory=src
dh_installdocs -a -O--sourcedirectory=src
dh_installchangelogs -a -O--sourcedirectory=src
dh_installman -a -O--sourcedirectory=src
dh_perl -a -O--sourcedirectory=src
dh_link -a -O--sourcedirectory=src
debian/rules override_dh_compress
make[1]: Entering directory '/«BUILDDIR»/mrbayes-3.2.5+dfsg'
dh_compress --exclude=.pdf
make[1]: Leaving directory '/«BUILDDIR»/mrbayes-3.2.5+dfsg'
dh_fixperms -a -O--sourcedirectory=src
debian/rules override_dh_strip
make[1]: Entering directory '/«BUILDDIR»/mrbayes-3.2.5+dfsg'
dh_strip --dbg-package=mrbayes-dbg
make[1]: Leaving directory '/«BUILDDIR»/mrbayes-3.2.5+dfsg'
dh_makeshlibs -a -O--sourcedirectory=src
dh_shlibdeps -a -O--sourcedirectory=src
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrbayes-mpi/usr/lib/mrbayes-mpi/mb-mpi was not linked against libhwloc.so.5 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrbayes-mpi/usr/lib/mrbayes-mpi/mb-mpi was not linked against libdl.so.2 (it uses none of the library's symbols)
dh_installdeb -a -O--sourcedirectory=src
dh_gencontrol -a -O--sourcedirectory=src
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dh_md5sums -a -O--sourcedirectory=src
dh_builddeb -a -O--sourcedirectory=src
dpkg-deb: building package 'mrbayes' in '../mrbayes_3.2.5+dfsg-1+b1_armhf.deb'.
dpkg-deb: building package 'mrbayes-mpi' in '../mrbayes-mpi_3.2.5+dfsg-1+b1_armhf.deb'.
dpkg-deb: building package 'mrbayes-dbg' in '../mrbayes-dbg_3.2.5+dfsg-1+b1_armhf.deb'.
dpkg-genchanges -B -mRaspbian wandboard test autobuilder <root@raspbian.org> >../mrbayes_3.2.5+dfsg-1+b1_armhf.changes
dpkg-genchanges: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build mrbayes-3.2.5+dfsg
dpkg-buildpackage: binary-only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
Build finished at 20150909-1314
Finished
────────
I: Built successfully
┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build Chroot │
└──────────────────────────────────────────────────────────────────────────────┘
┌──────────────────────────────────────────────────────────────────────────────┐
│ Changes │
└──────────────────────────────────────────────────────────────────────────────┘
mrbayes_3.2.5+dfsg-1+b1_armhf.changes:
──────────────────────────────────────
Format: 1.8
Date: Mon, 29 Jun 2015 08:56:47 +0200
Source: mrbayes (3.2.5+dfsg-1)
Binary: mrbayes mrbayes-mpi mrbayes-dbg mrbayes-doc
Binary-Only: yes
Architecture: armhf
Version: 3.2.5+dfsg-1+b1
Distribution: stretch-staging
Urgency: low
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Raspbian wandboard test autobuilder <root@raspbian.org>
Description:
mrbayes - Bayesian Inference of Phylogeny
mrbayes-dbg - Bayesian Inference of Phylogeny - debug symbols
mrbayes-doc - Bayesian Inference of Phylogeny - manual
mrbayes-mpi - Bayesian Inference of Phylogeny - mpi version
Changes:
mrbayes (3.2.5+dfsg-1+b1) stretch-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
Checksums-Sha1:
983e80de7ebf3e3c20cdb17382130ff3577e8112 1597294 mrbayes-dbg_3.2.5+dfsg-1+b1_armhf.deb
c48f571fe4dc73de83857888f40e18f48ed11b24 491702 mrbayes-mpi_3.2.5+dfsg-1+b1_armhf.deb
862e0ae97fcab30fe26407db7e7aa29394c083ea 479268 mrbayes_3.2.5+dfsg-1+b1_armhf.deb
Checksums-Sha256:
4d98d721fd2d39915dae9cb228e55b8fd583f9e6e124b9d77fe1342fdc869d39 1597294 mrbayes-dbg_3.2.5+dfsg-1+b1_armhf.deb
4f1d3b889cf1dff54f19a1138e74bf90f255f93edab27874912a02dd7658b0d0 491702 mrbayes-mpi_3.2.5+dfsg-1+b1_armhf.deb
eb5bcba7fe0aba2950c8ba0b158e9d3bd3df207cb04d63827c78ad922ddaf4b2 479268 mrbayes_3.2.5+dfsg-1+b1_armhf.deb
Files:
c6323b96be34238331a663e5318c9e3d 1597294 debug extra mrbayes-dbg_3.2.5+dfsg-1+b1_armhf.deb
66b12141271961f68ae240f7bd186b30 491702 science optional mrbayes-mpi_3.2.5+dfsg-1+b1_armhf.deb
de6020dd4b33d28cfb50edfe213705cb 479268 science optional mrbayes_3.2.5+dfsg-1+b1_armhf.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
mrbayes-dbg_3.2.5+dfsg-1+b1_armhf.deb
─────────────────────────────────────
new debian package, version 2.0.
size 1597294 bytes: control archive=1026 bytes.
1226 bytes, 23 lines control
448 bytes, 5 lines md5sums
Package: mrbayes-dbg
Source: mrbayes (3.2.5+dfsg-1)
Version: 3.2.5+dfsg-1+b1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1721
Depends: mrbayes (= 3.2.5+dfsg-1+b1) | mrbayes-mpi (= 3.2.5+dfsg-1+b1)
Breaks: mrbayes (>> 3.2.5+dfsg-1+b1), mrbayes (<< 3.2.5+dfsg-1+b1), mrbayes-mpi (>> 3.2.5+dfsg-1+b1), mrbayes-mpi (<< 3.2.5+dfsg-1+b1)
Section: debug
Priority: extra
Homepage: http://mrbayes.csit.fsu.edu/
Description: Bayesian Inference of Phylogeny - debug symbols
Bayesian inference of phylogeny is based upon a quantity called the posterior
probability distribution of trees, which is the probability of a tree
conditioned on the observations. The conditioning is accomplished using
Bayes's theorem. The posterior probability distribution of trees is
impossible to calculate analytically; instead, MrBayes uses a simulation
technique called Markov chain Monte Carlo (or MCMC) to approximate the
posterior probabilities of trees.
.
The package provides the debug symbols that are otherwise stripped from
the binaries to reduce the footprint of the package. This package can be
installed to help debugging of problems when running mrbayes.
drwxr-xr-x root/root 0 2015-09-09 13:14 ./
drwxr-xr-x root/root 0 2015-09-09 13:14 ./usr/
drwxr-xr-x root/root 0 2015-09-09 13:14 ./usr/lib/
drwxr-xr-x root/root 0 2015-09-09 13:14 ./usr/lib/debug/
drwxr-xr-x root/root 0 2015-09-09 13:14 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2015-09-09 13:14 ./usr/lib/debug/.build-id/48/
-rw-r--r-- root/root 879504 2015-09-09 13:14 ./usr/lib/debug/.build-id/48/d18b50838ae0c78ce50c8b542526adf4f879b5.debug
drwxr-xr-x root/root 0 2015-09-09 13:14 ./usr/lib/debug/.build-id/e2/
-rw-r--r-- root/root 865396 2015-09-09 13:14 ./usr/lib/debug/.build-id/e2/46bd1577491c617c8b4db4b1d2210b47e96d08.debug
drwxr-xr-x root/root 0 2015-09-09 13:14 ./usr/share/
drwxr-xr-x root/root 0 2015-09-09 13:14 ./usr/share/doc/
drwxr-xr-x root/root 0 2015-09-09 13:14 ./usr/share/doc/mrbayes-dbg/
-rw-r--r-- root/root 226 2015-09-09 12:52 ./usr/share/doc/mrbayes-dbg/changelog.Debian.armhf.gz
-rw-r--r-- root/root 1771 2015-09-09 12:52 ./usr/share/doc/mrbayes-dbg/changelog.Debian.gz
-rw-r--r-- root/root 1482 2013-09-12 08:57 ./usr/share/doc/mrbayes-dbg/copyright
mrbayes-mpi_3.2.5+dfsg-1+b1_armhf.deb
─────────────────────────────────────
new debian package, version 2.0.
size 491702 bytes: control archive=1009 bytes.
1041 bytes, 21 lines control
485 bytes, 7 lines md5sums
Package: mrbayes-mpi
Source: mrbayes (3.2.5+dfsg-1)
Version: 3.2.5+dfsg-1+b1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1410
Depends: libc6 (>= 2.7), libhmsbeagle1v5, libhwloc5 (>= 1.11.0), libopenmpi1.6, libreadline6 (>= 6.0), mpi-default-bin
Suggests: mpi-default, mrbayes-doc
Section: science
Priority: optional
Homepage: http://mrbayes.csit.fsu.edu/
Description: Bayesian Inference of Phylogeny - mpi version
Bayesian inference of phylogeny is based upon a quantity called the posterior
probability distribution of trees, which is the probability of a tree
conditioned on the observations. The conditioning is accomplished using
Bayes's theorem. The posterior probability distribution of trees is
impossible to calculate analytically; instead, MrBayes uses a simulation
technique called Markov chain Monte Carlo (or MCMC) to approximate the
posterior probabilities of trees.
.
This package offers a binary compiled for parallel computation with MPI.
drwxr-xr-x root/root 0 2015-09-09 13:14 ./
drwxr-xr-x root/root 0 2015-09-09 13:14 ./usr/
drwxr-xr-x root/root 0 2015-09-09 13:14 ./usr/bin/
-rwxr-xr-x root/root 162 2013-09-12 08:57 ./usr/bin/mb-mpi
drwxr-xr-x root/root 0 2015-09-09 13:14 ./usr/lib/
drwxr-xr-x root/root 0 2015-09-09 13:14 ./usr/lib/mrbayes-mpi/
-rwxr-xr-x root/root 1423632 2015-09-09 13:14 ./usr/lib/mrbayes-mpi/mb-mpi
drwxr-xr-x root/root 0 2015-09-09 13:14 ./usr/share/
drwxr-xr-x root/root 0 2015-09-09 13:14 ./usr/share/doc/
drwxr-xr-x root/root 0 2015-09-09 13:14 ./usr/share/doc/mrbayes-mpi/
-rw-r--r-- root/root 348 2013-09-12 08:57 ./usr/share/doc/mrbayes-mpi/README.Debian
-rw-r--r-- root/root 226 2015-09-09 12:52 ./usr/share/doc/mrbayes-mpi/changelog.Debian.armhf.gz
-rw-r--r-- root/root 1771 2015-09-09 12:52 ./usr/share/doc/mrbayes-mpi/changelog.Debian.gz
-rw-r--r-- root/root 1482 2013-09-12 08:57 ./usr/share/doc/mrbayes-mpi/copyright
drwxr-xr-x root/root 0 2015-09-09 13:14 ./usr/share/man/
drwxr-xr-x root/root 0 2015-09-09 13:14 ./usr/share/man/man1/
-rw-r--r-- root/root 226 2015-09-09 13:14 ./usr/share/man/man1/mb-mpi.1.gz
mrbayes_3.2.5+dfsg-1+b1_armhf.deb
─────────────────────────────────
new debian package, version 2.0.
size 479268 bytes: control archive=888 bytes.
893 bytes, 19 lines control
400 bytes, 6 lines md5sums
Package: mrbayes
Source: mrbayes (3.2.5+dfsg-1)
Version: 3.2.5+dfsg-1+b1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1383
Depends: libc6 (>= 2.7), libhmsbeagle1v5, libreadline6 (>= 6.0), libhmsbeagle1
Suggests: mrbayes-doc
Section: science
Priority: optional
Homepage: http://mrbayes.csit.fsu.edu/
Description: Bayesian Inference of Phylogeny
Bayesian inference of phylogeny is based upon a quantity called the posterior
probability distribution of trees, which is the probability of a tree
conditioned on the observations. The conditioning is accomplished using
Bayes's theorem. The posterior probability distribution of trees is
impossible to calculate analytically; instead, MrBayes uses a simulation
technique called Markov chain Monte Carlo (or MCMC) to approximate the
posterior probabilities of trees.
drwxr-xr-x root/root 0 2015-09-09 13:14 ./
drwxr-xr-x root/root 0 2015-09-09 13:14 ./usr/
drwxr-xr-x root/root 0 2015-09-09 13:14 ./usr/bin/
-rwxr-xr-x root/root 1399008 2015-09-09 13:14 ./usr/bin/mb
drwxr-xr-x root/root 0 2015-09-09 13:14 ./usr/share/
drwxr-xr-x root/root 0 2015-09-09 13:14 ./usr/share/doc/
drwxr-xr-x root/root 0 2015-09-09 13:14 ./usr/share/doc/mrbayes/
-rw-r--r-- root/root 311 2013-09-12 08:57 ./usr/share/doc/mrbayes/README.Debian
-rw-r--r-- root/root 226 2015-09-09 12:52 ./usr/share/doc/mrbayes/changelog.Debian.armhf.gz
-rw-r--r-- root/root 1771 2015-09-09 12:52 ./usr/share/doc/mrbayes/changelog.Debian.gz
-rw-r--r-- root/root 1482 2013-09-12 08:57 ./usr/share/doc/mrbayes/copyright
drwxr-xr-x root/root 0 2015-09-09 13:14 ./usr/share/man/
drwxr-xr-x root/root 0 2015-09-09 13:14 ./usr/share/man/man1/
-rw-r--r-- root/root 206 2015-09-09 13:14 ./usr/share/man/man1/mb.1.gz
┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
┌──────────────────────────────────────────────────────────────────────────────┐
│ Cleanup │
└──────────────────────────────────────────────────────────────────────────────┘
Purging /«BUILDDIR»
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary │
└──────────────────────────────────────────────────────────────────────────────┘
Build Architecture: armhf
Build-Space: 33492
Build-Time: 1307
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 243
Job: mrbayes_3.2.5+dfsg-1
Machine Architecture: armhf
Package: mrbayes
Package-Time: 1654
Source-Version: 3.2.5+dfsg-1
Space: 33492
Status: successful
Version: 3.2.5+dfsg-1+b1
────────────────────────────────────────────────────────────────────────────────
Finished at 20150909-1314
Build needed 00:27:34, 33492k disc space