mrbayes →
3.2.3+dfsg-1 →
armhf → 2014-11-05 18:10:53
sbuild (Debian sbuild) 0.63.2 (18 Aug 2012) on testwandboard
╔══════════════════════════════════════════════════════════════════════════════╗
║ mrbayes 3.2.3+dfsg-1 (armhf) 05 Nov 2014 17:40 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: mrbayes
Version: 3.2.3+dfsg-1
Source Version: 3.2.3+dfsg-1
Distribution: jessie-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'build/mrbayes-BLgDuk/mrbayes-3.2.3+dfsg' with '«PKGBUILDDIR»'
I: NOTICE: Log filtering will replace 'build/mrbayes-BLgDuk' with '«BUILDDIR»'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/jessie-staging-armhf-sbuild-8d6cf8f3-2523-4d0e-b339-e925b7adad2b' with '«CHROOT»'
┌──────────────────────────────────────────────────────────────────────────────┐
│ Update chroot │
└──────────────────────────────────────────────────────────────────────────────┘
Get:1 http://172.17.0.1 jessie-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1 jessie-staging/main Sources [7732 kB]
Get:3 http://172.17.0.1 jessie-staging/main armhf Packages [8958 kB]
Ign http://172.17.0.1 jessie-staging/main Translation-en
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Fetch source files │
└──────────────────────────────────────────────────────────────────────────────┘
Check APT
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Checking available source versions...
Download source files with APT
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Reading state information...
NOTICE: 'mrbayes' packaging is maintained in the 'Svn' version control system at:
svn://anonscm.debian.org/debian-med/trunk/packages/mrbayes/trunk/
Need to get 2295 kB of source archives.
Get:1 http://172.17.0.1/private/ jessie-staging/main mrbayes 3.2.3+dfsg-1 (dsc) [2405 B]
Get:2 http://172.17.0.1/private/ jessie-staging/main mrbayes 3.2.3+dfsg-1 (tar) [2286 kB]
Get:3 http://172.17.0.1/private/ jessie-staging/main mrbayes 3.2.3+dfsg-1 (diff) [6276 B]
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Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-lsj4go/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install core build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 1 newly installed, 0 to remove and 53 not upgraded.
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Selecting previously unselected package sbuild-build-depends-core-dummy.
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Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
Merged Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), libreadline-dev, mpi-default-dev, libhmsbeagle-dev (<< 2.1-1) | libhmsbeagle-dev (>= 2.1-2), autoconf, automake
Filtered Build-Depends: libc6-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), libreadline-dev, mpi-default-dev, libhmsbeagle-dev (<< 2.1-1) | libhmsbeagle-dev (>= 2.1-2), autoconf, automake
dpkg-deb: building package `sbuild-build-depends-mrbayes-dummy' in `/«BUILDDIR»/resolver-ZSt4_k/apt_archive/sbuild-build-depends-mrbayes-dummy.deb'.
OK
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install mrbayes build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
adduser autoconf automake autotools-dev bsdmainutils cpp-4.9 debhelper
dpkg-dev file g++-4.9 gcc-4.9 gcc-4.9-base gettext gettext-base groff-base
intltool-debian libasan1 libasprintf0c2 libatomic1 libcr0 libcroco3
libdpkg-perl libffi6 libgcc-4.9-dev libgcc1 libgfortran3 libglib2.0-0
libgomp1 libhmsbeagle-dev libhmsbeagle1 libhwloc-dev libhwloc5
libibverbs-dev libibverbs1 libltdl-dev libltdl7 libmagic1 libopenmpi-dev
libopenmpi1.6 libpipeline1 libreadline-dev libreadline6-dev libsctp1
libsigsegv2 libstdc++-4.9-dev libstdc++6 libtinfo-dev libtorque2 libubsan0
libunistring0 libxml2 m4 man-db mpi-default-dev openmpi-common po-debconf
Suggested packages:
liblocale-gettext-perl autoconf-archive gnu-standards autoconf-doc libtool
wamerican wordlist whois vacation gcc-4.9-locales dh-make debian-keyring
gcc-4.9-doc libstdc++6-4.9-dbg libgcc1-dbg libgomp1-dbg libitm1-dbg
libatomic1-dbg libasan1-dbg liblsan0-dbg libtsan0-dbg libubsan0-dbg
libcilkrts5-dbg libquadmath-dbg gettext-doc groff blcr-dkms
libhwloc-contrib-plugins libtool-doc readline-doc libstdc++-4.9-doc less
www-browser libmail-box-perl
Recommended packages:
libalgorithm-merge-perl curl wget lynx-cur autopoint libasprintf-dev
libgettextpo-dev libfile-fcntllock-perl libglib2.0-data shared-mime-info
xdg-user-dirs libhwloc-plugins lksctp-tools xml-core libmail-sendmail-perl
The following NEW packages will be installed:
adduser autoconf automake autotools-dev bsdmainutils debhelper file gettext
gettext-base groff-base intltool-debian libasprintf0c2 libcr0 libcroco3
libffi6 libgfortran3 libglib2.0-0 libhmsbeagle-dev libhmsbeagle1
libhwloc-dev libhwloc5 libibverbs-dev libibverbs1 libltdl-dev libltdl7
libmagic1 libopenmpi-dev libopenmpi1.6 libpipeline1 libreadline-dev
libreadline6-dev libsctp1 libsigsegv2 libtinfo-dev libtorque2 libunistring0
libxml2 m4 man-db mpi-default-dev openmpi-common po-debconf
sbuild-build-depends-mrbayes-dummy
The following packages will be upgraded:
cpp-4.9 dpkg-dev g++-4.9 gcc-4.9 gcc-4.9-base libasan1 libatomic1
libdpkg-perl libgcc-4.9-dev libgcc1 libgomp1 libstdc++-4.9-dev libstdc++6
libubsan0
14 upgraded, 43 newly installed, 0 to remove and 39 not upgraded.
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Get:1 http://172.17.0.1/private/ jessie-staging/main libgomp1 armhf 4.9.1-16 [34.7 kB]
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Get:6 http://172.17.0.1/private/ jessie-staging/main libatomic1 armhf 4.9.1-16 [6798 B]
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Get:24 http://172.17.0.1/private/ jessie-staging/main libhmsbeagle1 armhf 2.1.2-1 [48.4 kB]
Get:25 http://172.17.0.1/private/ jessie-staging/main libltdl7 armhf 2.4.2-1.11 [42.5 kB]
Get:26 http://172.17.0.1/private/ jessie-staging/main libsctp1 armhf 1.0.16+dfsg-2 [27.1 kB]
Get:27 http://172.17.0.1/private/ jessie-staging/main libsigsegv2 armhf 2.10-4 [28.2 kB]
Get:28 http://172.17.0.1/private/ jessie-staging/main libunistring0 armhf 0.9.3-5.2 [253 kB]
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Get:30 http://172.17.0.1/private/ jessie-staging/main adduser all 3.113+nmu3 [264 kB]
Get:31 http://172.17.0.1/private/ jessie-staging/main file armhf 1:5.20-1 [58.0 kB]
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Get:37 http://172.17.0.1/private/ jessie-staging/main dpkg-dev all 1.17.21 [1502 kB]
Get:38 http://172.17.0.1/private/ jessie-staging/main libdpkg-perl all 1.17.21 [1038 kB]
Get:39 http://172.17.0.1/private/ jessie-staging/main gettext armhf 0.19.3-1 [1168 kB]
Get:40 http://172.17.0.1/private/ jessie-staging/main intltool-debian all 0.35.0+20060710.1 [29.8 kB]
Get:41 http://172.17.0.1/private/ jessie-staging/main po-debconf all 1.0.16+nmu3 [220 kB]
Get:42 http://172.17.0.1/private/ jessie-staging/main debhelper all 9.20141022 [812 kB]
Get:43 http://172.17.0.1/private/ jessie-staging/main libcr0 armhf 0.8.5-2.1 [33.5 kB]
Get:44 http://172.17.0.1/private/ jessie-staging/main libhmsbeagle-dev armhf 2.1.2-1 [149 kB]
Get:45 http://172.17.0.1/private/ jessie-staging/main libltdl-dev armhf 2.4.2-1.11 [155 kB]
Get:46 http://172.17.0.1/private/ jessie-staging/main libtinfo-dev armhf 5.9+20140913-1 [65.4 kB]
Get:47 http://172.17.0.1/private/ jessie-staging/main libreadline6-dev armhf 6.3-8 [105 kB]
Get:48 http://172.17.0.1/private/ jessie-staging/main libreadline-dev armhf 6.3-8 [994 B]
Get:49 http://172.17.0.1/private/ jessie-staging/main libtorque2 armhf 2.4.16+dfsg-1.5 [93.1 kB]
Get:50 http://172.17.0.1/private/ jessie-staging/main libhwloc-dev armhf 1.10.0-2 [126 kB]
Get:51 http://172.17.0.1/private/ jessie-staging/main libibverbs1 armhf 1.1.8-1 [28.3 kB]
Get:52 http://172.17.0.1/private/ jessie-staging/main libibverbs-dev armhf 1.1.8-1 [82.4 kB]
Get:53 http://172.17.0.1/private/ jessie-staging/main libopenmpi1.6 armhf 1.6.5-8+rpi1 [1226 kB]
Get:54 http://172.17.0.1/private/ jessie-staging/main openmpi-common all 1.6.5-8+rpi1 [111 kB]
Get:55 http://172.17.0.1/private/ jessie-staging/main libopenmpi-dev armhf 1.6.5-8+rpi1 [447 kB]
Get:56 http://172.17.0.1/private/ jessie-staging/main mpi-default-dev armhf 1.0.2+nmu2 [3984 B]
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Selecting previously unselected package libtorque2.
Preparing to unpack .../libtorque2_2.4.16+dfsg-1.5_armhf.deb ...
Unpacking libtorque2 (2.4.16+dfsg-1.5) ...
Selecting previously unselected package libhwloc-dev:armhf.
Preparing to unpack .../libhwloc-dev_1.10.0-2_armhf.deb ...
Unpacking libhwloc-dev:armhf (1.10.0-2) ...
Selecting previously unselected package libibverbs1.
Preparing to unpack .../libibverbs1_1.1.8-1_armhf.deb ...
Unpacking libibverbs1 (1.1.8-1) ...
Selecting previously unselected package libibverbs-dev.
Preparing to unpack .../libibverbs-dev_1.1.8-1_armhf.deb ...
Unpacking libibverbs-dev (1.1.8-1) ...
Selecting previously unselected package libopenmpi1.6.
Preparing to unpack .../libopenmpi1.6_1.6.5-8+rpi1_armhf.deb ...
Unpacking libopenmpi1.6 (1.6.5-8+rpi1) ...
Selecting previously unselected package openmpi-common.
Preparing to unpack .../openmpi-common_1.6.5-8+rpi1_all.deb ...
Unpacking openmpi-common (1.6.5-8+rpi1) ...
Selecting previously unselected package libopenmpi-dev.
Preparing to unpack .../libopenmpi-dev_1.6.5-8+rpi1_armhf.deb ...
Unpacking libopenmpi-dev (1.6.5-8+rpi1) ...
Selecting previously unselected package mpi-default-dev.
Preparing to unpack .../mpi-default-dev_1.0.2+nmu2_armhf.deb ...
Unpacking mpi-default-dev (1.0.2+nmu2) ...
Selecting previously unselected package sbuild-build-depends-mrbayes-dummy.
Preparing to unpack .../sbuild-build-depends-mrbayes-dummy.deb ...
Unpacking sbuild-build-depends-mrbayes-dummy (0.invalid.0) ...
Setting up libgomp1:armhf (4.9.1-16) ...
Setting up libasan1:armhf (4.9.1-16) ...
Setting up libubsan0:armhf (4.9.1-16) ...
Setting up libatomic1:armhf (4.9.1-16) ...
Setting up libgcc-4.9-dev:armhf (4.9.1-16) ...
Setting up cpp-4.9 (4.9.1-16) ...
Setting up gcc-4.9 (4.9.1-16) ...
Setting up libstdc++-4.9-dev:armhf (4.9.1-16) ...
Setting up g++-4.9 (4.9.1-16) ...
Setting up libpipeline1:armhf (1.4.0-1) ...
Setting up groff-base (1.22.2-8) ...
Setting up bsdmainutils (9.0.6) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up man-db (2.7.0.2-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libasprintf0c2:armhf (0.19.3-1) ...
Setting up libmagic1:armhf (1:5.20-1) ...
Setting up libxml2:armhf (2.9.1+dfsg1-4) ...
Setting up libffi6:armhf (3.1-2) ...
Setting up libglib2.0-0:armhf (2.42.0-2) ...
No schema files found: doing nothing.
Setting up libcroco3:armhf (0.6.8-3) ...
Setting up libgfortran3:armhf (4.9.1-16) ...
Setting up libhmsbeagle1 (2.1.2-1) ...
Setting up libltdl7:armhf (2.4.2-1.11) ...
Setting up libsctp1:armhf (1.0.16+dfsg-2) ...
Setting up libsigsegv2:armhf (2.10-4) ...
Setting up libunistring0:armhf (0.9.3-5.2) ...
Setting up libhwloc5:armhf (1.10.0-2) ...
Setting up adduser (3.113+nmu3) ...
Setting up file (1:5.20-1) ...
Setting up gettext-base (0.19.3-1) ...
Setting up m4 (1.4.17-4) ...
Setting up autoconf (2.69-8) ...
Setting up autotools-dev (20140911.1) ...
Setting up automake (1:1.14.1-3) ...
update-alternatives: using /usr/bin/automake-1.14 to provide /usr/bin/automake (automake) in auto mode
Setting up libdpkg-perl (1.17.21) ...
Setting up dpkg-dev (1.17.21) ...
Setting up gettext (0.19.3-1) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu3) ...
Setting up debhelper (9.20141022) ...
Setting up libcr0 (0.8.5-2.1) ...
Setting up libhmsbeagle-dev (2.1.2-1) ...
Setting up libltdl-dev:armhf (2.4.2-1.11) ...
Setting up libtinfo-dev:armhf (5.9+20140913-1) ...
Setting up libreadline6-dev:armhf (6.3-8) ...
Setting up libreadline-dev:armhf (6.3-8) ...
Setting up libtorque2 (2.4.16+dfsg-1.5) ...
Setting up libhwloc-dev:armhf (1.10.0-2) ...
Setting up libibverbs1 (1.1.8-1) ...
Setting up libibverbs-dev (1.1.8-1) ...
Setting up libopenmpi1.6 (1.6.5-8+rpi1) ...
Setting up openmpi-common (1.6.5-8+rpi1) ...
Setting up libopenmpi-dev (1.6.5-8+rpi1) ...
update-alternatives: using /usr/lib/openmpi/include to provide /usr/include/mpi (mpi) in auto mode
Setting up mpi-default-dev (1.0.2+nmu2) ...
Setting up sbuild-build-depends-mrbayes-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.19-11) ...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build environment │
└──────────────────────────────────────────────────────────────────────────────┘
Kernel: Linux 3.16-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.24.51.20140918-1 dpkg-dev_1.17.21 g++-4.6_4.6.4-5+rpi1 g++-4.9_4.9.1-16 gcc-4.6_4.6.4-5+rpi1 gcc-4.8_4.8.3-11 gcc-4.9_4.9.1-16 libc6-dev_2.19-11 libstdc++-4.9-dev_4.9.1-16 libstdc++6_4.9.1-16 libstdc++6-4.6-dev_4.6.4-5+rpi1 linux-libc-dev_3.14.4-1+rpi1+b4
Package versions: adduser_3.113+nmu3 apt_1.0.9.1 autoconf_2.69-8 automake_1:1.14.1-3 autotools-dev_20140911.1 base-files_7.5+rpi1 base-passwd_3.5.36 bash_4.3-9.2 binutils_2.24.51.20140918-1 bsdmainutils_9.0.6 bsdutils_1:2.20.1-5.9 build-essential_11.7 bzip2_1.0.6-7 coreutils_8.23-2 cpio_2.11+dfsg-2 cpp_4:4.9.1-1 cpp-4.6_4.6.4-5+rpi1 cpp-4.8_4.8.3-11 cpp-4.9_4.9.1-16 dash_0.5.7-4 debconf_1.5.53 debfoster_2.7-2 debhelper_9.20141022 debianutils_4.4 diffutils_1:3.3-1 dpkg_1.17.13 dpkg-dev_1.17.21 e2fslibs_1.42.12-1 e2fsprogs_1.42.12-1 fakeroot_1.20.1-1.1 file_1:5.20-1 findutils_4.4.2-9 g++_4:4.9.1-1 g++-4.6_4.6.4-5+rpi1 g++-4.9_4.9.1-16 gcc_4:4.9.1-1 gcc-4.5-base_4.5.3-12+rpi1 gcc-4.6_4.6.4-5+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8_4.8.3-11 gcc-4.8-base_4.8.3-11 gcc-4.9_4.9.1-16 gcc-4.9-base_4.9.1-16 gettext_0.19.3-1 gettext-base_0.19.3-1 gnupg_1.4.18-4 gpgv_1.4.18-4 grep_2.20-3 groff-base_1.22.2-8 gzip_1.6-3 hostname_3.15 init_1.21 initramfs-tools_0.116 initscripts_2.88dsf-53.4 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.1 klibc-utils_2.0.3-1+rpi1 kmod_18-3 libacl1_2.2.52-2 libapt-pkg4.12_1.0.9.1 libarchive-extract-perl_0.72-1 libasan0_4.8.3-11 libasan1_4.9.1-16 libasprintf0c2_0.19.3-1 libatomic1_4.9.1-16 libattr1_1:2.4.47-2 libaudit-common_1:2.4-1 libaudit1_1:2.4-1 libblkid1_2.20.1-5.9 libbz2-1.0_1.0.6-7 libc-bin_2.19-11 libc-dev-bin_2.19-11 libc6_2.19-11 libc6-dev_2.19-11 libcap2_1:2.24-6 libcgi-pm-perl_4.03-1 libclass-isa-perl_0.36-5 libcloog-isl4_0.18.2-1 libcomerr2_1.42.12-1 libcr0_0.8.5-2.1 libcroco3_0.6.8-3 libdb5.1_5.1.29-6 libdb5.3_5.3.28-6 libdbus-1-3_1.8.6-2 libdebconfclient0_0.192 libdpkg-perl_1.17.21 libdrm2_2.4.56-1 libfakeroot_1.20.1-1.1 libffi6_3.1-2 libgc1c2_1:7.2d-6.3 libgcc-4.8-dev_4.8.3-11 libgcc-4.9-dev_4.9.1-16 libgcc1_1:4.9.1-16 libgdbm3_1.8.3-13 libgfortran3_4.9.1-16 libglib2.0-0_2.42.0-2 libgmp10_2:6.0.0+dfsg-4+rpi1 libgomp1_4.9.1-16 libhmsbeagle-dev_2.1.2-1 libhmsbeagle1_2.1.2-1 libhwloc-dev_1.10.0-2 libhwloc5_1.10.0-2 libibverbs-dev_1.1.8-1 libibverbs1_1.1.8-1 libisl10_0.12.2-2 libklibc_2.0.3-1+rpi1 libkmod2_18-3 libltdl-dev_2.4.2-1.11 libltdl7_2.4.2-1.11 liblzma5_5.1.1alpha+20120614-2 libmagic1_1:5.20-1 libmodule-pluggable-perl_5.1-1 libmount1_2.20.1-5.9 libmpc3_1.0.2-1 libmpfr4_3.1.2-1 libncurses5_5.9+20140913-1 libncursesw5_5.9+20140913-1 libopenmpi-dev_1.6.5-8+rpi1 libopenmpi1.6_1.6.5-8+rpi1 libpackage-constants-perl_0.04-1 libpam-modules_1.1.8-3.1 libpam-modules-bin_1.1.8-3.1 libpam-runtime_1.1.8-3.1 libpam0g_1.1.8-3.1 libpcre3_1:8.35-3 libpipeline1_1.4.0-1 libpng12-0_1.2.50-2 libpod-latex-perl_0.61-1 libprocps0_1:3.3.4-2 libprocps3_1:3.3.9-7 libreadline-dev_6.3-8 libreadline6_6.3-8 libreadline6-dev_6.3-8 libsctp1_1.0.16+dfsg-2 libselinux1_2.3-2 libsemanage-common_2.3-1 libsemanage1_2.3-1 libsepol1_2.3-2 libsigsegv2_2.10-4 libslang2_2.3.0-1 libss2_1.42.12-1 libstdc++-4.9-dev_4.9.1-16 libstdc++6_4.9.1-16 libstdc++6-4.6-dev_4.6.4-5+rpi1 libswitch-perl_2.17-2 libtimedate-perl_2.3000-2 libtinfo-dev_5.9+20140913-1 libtinfo5_5.9+20140913-1 libtorque2_2.4.16+dfsg-1.5 libubsan0_4.9.1-16 libudev0_175-7.2 libudev1_208-8 libunistring0_0.9.3-5.2 libusb-0.1-4_2:0.1.12-24 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5.9 libxml2_2.9.1+dfsg1-4 linux-libc-dev_3.14.4-1+rpi1+b4 login_1:4.2-2 lsb-base_4.1+Debian13+rpi1 m4_1.4.17-4 make_4.0-8 makedev_2.3.1-93 man-db_2.7.0.2-2 mawk_1.3.3-17 mount_2.20.1-5.9 mpi-default-dev_1.0.2+nmu2 multiarch-support_2.19-11 nano_2.2.6-3 ncurses-base_5.9+20140913-1 ncurses-bin_5.9+20140913-1 openmpi-common_1.6.5-8+rpi1 passwd_1:4.2-2 patch_2.7.1-6 perl_5.20.1-1 perl-base_5.20.1-1 perl-modules_5.20.1-1 plymouth_0.9.0-7 po-debconf_1.0.16+nmu3 procps_1:3.3.9-7 raspbian-archive-keyring_20120528.2 readline-common_6.3-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-mrbayes-dummy_0.invalid.0 sed_4.2.2-4 sensible-utils_0.0.9 startpar_0.59-3 sysv-rc_2.88dsf-53.4 sysvinit_2.88dsf-53.4 sysvinit-core_2.88dsf-53.4 sysvinit-utils_2.88dsf-53.4 tar_1.27.1-2 tzdata_2014g-1 udev_208-8 util-linux_2.20.1-5.9 xz-utils_5.1.1alpha+20120614-2 zlib1g_1:1.2.8.dfsg-1+rpi1
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
└──────────────────────────────────────────────────────────────────────────────┘
Unpack source
─────────────
gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Sat Oct 25 08:16:32 2014 UTC using RSA key ID D1C646D1
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./mrbayes_3.2.3+dfsg-1.dsc
dpkg-source: info: extracting mrbayes in mrbayes-3.2.3+dfsg
dpkg-source: info: unpacking mrbayes_3.2.3+dfsg.orig.tar.xz
dpkg-source: info: unpacking mrbayes_3.2.3+dfsg-1.debian.tar.xz
dpkg-source: info: applying as-needed.patch
dpkg-source: info: applying ldlibs.patch
Check disc space
────────────────
Sufficient free space for build
User Environment
────────────────
APT_CONFIG=/var/lib/sbuild/apt.conf
COLUMNS=80
CONSOLE=/dev/console
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
INIT_VERSION=sysvinit-2.88
LC_ALL=POSIX
LINES=24
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PREVLEVEL=N
PWD=/
RUNLEVEL=2
SCHROOT_ALIAS_NAME=jessie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=jessie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=jessie-staging-armhf-sbuild-8d6cf8f3-2523-4d0e-b339-e925b7adad2b
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
init=/sbin/init
previous=N
rootmnt=/root
runlevel=2
dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package mrbayes
dpkg-buildpackage: source version 3.2.3+dfsg-1
dpkg-buildpackage: source distribution unstable
dpkg-source --before-build mrbayes-3.2.3+dfsg
dpkg-buildpackage: host architecture armhf
fakeroot debian/rules clean
dh clean --sourcedirectory=src
dh_testdir -O--sourcedirectory=src
debian/rules override_dh_auto_clean
make[1]: Entering directory '/«BUILDDIR»/mrbayes-3.2.3+dfsg'
( cd src ; /usr/bin/make -f Makefile.in distclean )
make[2]: Entering directory '/«BUILDDIR»/mrbayes-3.2.3+dfsg/src'
rm -f *.o *~ mb
rm -rf Makefile config.log config.status config.h *.cache
make[2]: Leaving directory '/«BUILDDIR»/mrbayes-3.2.3+dfsg/src'
rm -f src/configure
rm -f mb mb-mpi src/mb
make[1]: Leaving directory '/«BUILDDIR»/mrbayes-3.2.3+dfsg'
dh_clean -O--sourcedirectory=src
debian/rules build-arch
dh build-arch --sourcedirectory=src
dh_testdir -a -O--sourcedirectory=src
debian/rules override_dh_auto_configure
make[1]: Entering directory '/«BUILDDIR»/mrbayes-3.2.3+dfsg'
#Configure for MPI at first
( cd src ; autoconf )
dh_auto_configure -- --with-beagle=/usr --enable-mpi=yes --enable-debug=yes
configure: WARNING: unrecognized options: --disable-maintainer-mode, --disable-dependency-tracking
configure: NOTICE: Because the variable $CFLAGS is defined in your shell, the
default MrBayes flags will be overridden. To ensure optimal performance, please check
that your $CFLAGS variable is set correctly. Alternatively, unset the $CFLAGS
variable in your shell in order to use the default MrBayes compiler options.
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for exp in -lm... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking for mpicc... yes
checking for SSE support... no
checking for /usr/include/libhmsbeagle/libhmsbeagle/beagle.h... no
checking for /usr/include/libhmsbeagle-1/libhmsbeagle/beagle.h... yes
checking for /usr/include/libhmsbeagle/libhmsbeagle/platform.h... no
checking for /usr/include/libhmsbeagle-1/libhmsbeagle/platform.h... yes
checking for /usr/lib... yes
checking for readline in -lreadline... yes
checking for rl_completion_matches function... yes
checking for 32 or 64 bits cpu... 32
configure: creating ./config.status
config.status: creating Makefile
config.status: creating config.h
configure: WARNING: unrecognized options: --disable-maintainer-mode, --disable-dependency-tracking
make[1]: Leaving directory '/«BUILDDIR»/mrbayes-3.2.3+dfsg'
debian/rules override_dh_auto_build
make[1]: Entering directory '/«BUILDDIR»/mrbayes-3.2.3+dfsg'
# build mb-mpi (from initial config)
LIBS="-Wl,--as-needed" dh_auto_build
make[2]: Entering directory '/«BUILDDIR»/mrbayes-3.2.3+dfsg/src'
mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o bayes.o bayes.c
mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o command.o command.c
mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o mcmc.o mcmc.c
mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o model.o model.c
mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o proposal.o proposal.c
mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o sumpt.o sumpt.c
mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o utils.o utils.c
mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o mbbeagle.o mbbeagle.c
mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o best.o best.c
mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -o mb bayes.o command.o mcmc.o model.o proposal.o sumpt.o utils.o mbbeagle.o best.o -Wl,-z,relro -L/usr/lib -lhmsbeagle -lreadline -lm
make[2]: Leaving directory '/«BUILDDIR»/mrbayes-3.2.3+dfsg/src'
mv src/mb ./mb-mpi
# Now - build mb
( cd src ; make clean )
make[2]: Entering directory '/«BUILDDIR»/mrbayes-3.2.3+dfsg/src'
rm -f *.o *~ mb
make[2]: Leaving directory '/«BUILDDIR»/mrbayes-3.2.3+dfsg/src'
dh_auto_configure -- --with-beagle=/usr --enable-mpi=no --enable-debug=yes
configure: WARNING: unrecognized options: --disable-maintainer-mode, --disable-dependency-tracking
configure: NOTICE: Because the variable $CFLAGS is defined in your shell, the
default MrBayes flags will be overridden. To ensure optimal performance, please check
that your $CFLAGS variable is set correctly. Alternatively, unset the $CFLAGS
variable in your shell in order to use the default MrBayes compiler options.
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for exp in -lm... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking for SSE support... no
checking for /usr/include/libhmsbeagle/libhmsbeagle/beagle.h... no
checking for /usr/include/libhmsbeagle-1/libhmsbeagle/beagle.h... yes
checking for /usr/include/libhmsbeagle/libhmsbeagle/platform.h... no
checking for /usr/include/libhmsbeagle-1/libhmsbeagle/platform.h... yes
checking for /usr/lib... yes
checking for readline in -lreadline... yes
checking for rl_completion_matches function... yes
checking for 32 or 64 bits cpu... 32
configure: creating ./config.status
config.status: creating Makefile
config.status: creating config.h
configure: WARNING: unrecognized options: --disable-maintainer-mode, --disable-dependency-tracking
LIBS="-Wl,--as-needed" dh_auto_build
make[2]: Entering directory '/«BUILDDIR»/mrbayes-3.2.3+dfsg/src'
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o bayes.o bayes.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o command.o command.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o mcmc.o mcmc.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o model.o model.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o proposal.o proposal.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o sumpt.o sumpt.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o utils.o utils.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o mbbeagle.o mbbeagle.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o best.o best.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -o mb bayes.o command.o mcmc.o model.o proposal.o sumpt.o utils.o mbbeagle.o best.o -Wl,-z,relro -L/usr/lib -lhmsbeagle -lreadline -lm
make[2]: Leaving directory '/«BUILDDIR»/mrbayes-3.2.3+dfsg/src'
mv src/mb .
make[1]: Leaving directory '/«BUILDDIR»/mrbayes-3.2.3+dfsg'
dh_auto_test -a -O--sourcedirectory=src
fakeroot debian/rules binary-arch
dh binary-arch --sourcedirectory=src
dh_testroot -a -O--sourcedirectory=src
dh_prep -a -O--sourcedirectory=src
debian/rules override_dh_auto_install
make[1]: Entering directory '/«BUILDDIR»/mrbayes-3.2.3+dfsg'
echo "Do not try to install to /usr/local/bin"
Do not try to install to /usr/local/bin
make[1]: Leaving directory '/«BUILDDIR»/mrbayes-3.2.3+dfsg'
dh_install -a -O--sourcedirectory=src
dh_installdocs -a -O--sourcedirectory=src
dh_installchangelogs -a -O--sourcedirectory=src
dh_installman -a -O--sourcedirectory=src
dh_perl -a -O--sourcedirectory=src
dh_link -a -O--sourcedirectory=src
debian/rules override_dh_compress
make[1]: Entering directory '/«BUILDDIR»/mrbayes-3.2.3+dfsg'
dh_compress --exclude=.pdf
make[1]: Leaving directory '/«BUILDDIR»/mrbayes-3.2.3+dfsg'
dh_fixperms -a -O--sourcedirectory=src
debian/rules override_dh_strip
make[1]: Entering directory '/«BUILDDIR»/mrbayes-3.2.3+dfsg'
dh_strip --dbg-package=mrbayes-dbg
make[1]: Leaving directory '/«BUILDDIR»/mrbayes-3.2.3+dfsg'
dh_makeshlibs -a -O--sourcedirectory=src
dh_shlibdeps -a -O--sourcedirectory=src
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrbayes-mpi/usr/lib/mrbayes-mpi/mb-mpi was not linked against libhwloc.so.5 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrbayes-mpi/usr/lib/mrbayes-mpi/mb-mpi was not linked against libdl.so.2 (it uses none of the library's symbols)
dh_installdeb -a -O--sourcedirectory=src
dh_gencontrol -a -O--sourcedirectory=src
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dh_md5sums -a -O--sourcedirectory=src
dh_builddeb -a -O--sourcedirectory=src
dpkg-deb: building package `mrbayes-mpi' in `../mrbayes-mpi_3.2.3+dfsg-1_armhf.deb'.
dpkg-deb: building package `mrbayes' in `../mrbayes_3.2.3+dfsg-1_armhf.deb'.
dpkg-deb: building package `mrbayes-dbg' in `../mrbayes-dbg_3.2.3+dfsg-1_armhf.deb'.
dpkg-genchanges -B -mRaspbian wandboard test autobuilder <root@raspbian.org> >../mrbayes_3.2.3+dfsg-1_armhf.changes
dpkg-genchanges: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build mrbayes-3.2.3+dfsg
dpkg-buildpackage: binary-only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
Build finished at 20141105-1810
Finished
────────
I: Built successfully
┌──────────────────────────────────────────────────────────────────────────────┐
│ Changes │
└──────────────────────────────────────────────────────────────────────────────┘
mrbayes_3.2.3+dfsg-1_armhf.changes:
───────────────────────────────────
Format: 1.8
Date: Sat, 25 Oct 2014 09:38:38 +0200
Source: mrbayes
Binary: mrbayes mrbayes-mpi mrbayes-dbg mrbayes-doc
Architecture: armhf
Version: 3.2.3+dfsg-1
Distribution: jessie-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
mrbayes - Bayesian Inference of Phylogeny
mrbayes-dbg - Bayesian Inference of Phylogeny - debug symbols
mrbayes-doc - Bayesian Inference of Phylogeny - manual
mrbayes-mpi - Bayesian Inference of Phylogeny - mpi version
Changes:
mrbayes (3.2.3+dfsg-1) unstable; urgency=medium
.
* New upstream version
* d/rules
- use xz in get-orig-source target
- drop redundant xz compression for binary package
* Adapt get-orig-source script
* cme fix dpkg-control
Checksums-Sha1:
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9f30f2c72704b3f9335c0eccd011f391a1515000 489814 mrbayes-mpi_3.2.3+dfsg-1_armhf.deb
8c9c5556944e7237d875275b680b58abd4f720c4 1601022 mrbayes-dbg_3.2.3+dfsg-1_armhf.deb
Checksums-Sha256:
09c203d70744071ca05fe9f43d3a16f88cd182ba9deeb343c448a5f03f5ed7f3 479866 mrbayes_3.2.3+dfsg-1_armhf.deb
0c0ba7ae1364e5015e65147027b1f10281d28fa83310859a15c053371da28ca7 489814 mrbayes-mpi_3.2.3+dfsg-1_armhf.deb
e3b7e33bbc1a5e9910cba0a10bb166d53d98fb131deb966fe102161fba5dc368 1601022 mrbayes-dbg_3.2.3+dfsg-1_armhf.deb
Files:
fd5e1ea1a7097cf2d299c750632b5937 479866 science optional mrbayes_3.2.3+dfsg-1_armhf.deb
da1deb8bbaa62a9af54c930db32f5e29 489814 science optional mrbayes-mpi_3.2.3+dfsg-1_armhf.deb
0391eb078fa37ee31c8e08cef45a8993 1601022 debug extra mrbayes-dbg_3.2.3+dfsg-1_armhf.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
mrbayes_3.2.3+dfsg-1_armhf.deb
──────────────────────────────
new debian package, version 2.0.
size 479866 bytes: control archive=901 bytes.
842 bytes, 18 lines control
318 bytes, 5 lines md5sums
Package: mrbayes
Version: 3.2.3+dfsg-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1379
Depends: libc6 (>= 2.7), libhmsbeagle1, libreadline6 (>= 6.0)
Suggests: mrbayes-doc
Section: science
Priority: optional
Homepage: http://mrbayes.csit.fsu.edu/
Description: Bayesian Inference of Phylogeny
Bayesian inference of phylogeny is based upon a quantity called the posterior
probability distribution of trees, which is the probability of a tree
conditioned on the observations. The conditioning is accomplished using
Bayes's theorem. The posterior probability distribution of trees is
impossible to calculate analytically; instead, MrBayes uses a simulation
technique called Markov chain Monte Carlo (or MCMC) to approximate the
posterior probabilities of trees.
drwxr-xr-x root/root 0 2014-11-05 18:09 ./
drwxr-xr-x root/root 0 2014-11-05 18:09 ./usr/
drwxr-xr-x root/root 0 2014-11-05 18:09 ./usr/bin/
-rwxr-xr-x root/root 1407208 2014-11-05 18:09 ./usr/bin/mb
drwxr-xr-x root/root 0 2014-11-05 18:09 ./usr/share/
drwxr-xr-x root/root 0 2014-11-05 18:09 ./usr/share/doc/
drwxr-xr-x root/root 0 2014-11-05 18:09 ./usr/share/doc/mrbayes/
-rw-r--r-- root/root 311 2013-09-12 08:57 ./usr/share/doc/mrbayes/README.Debian
-rw-r--r-- root/root 1482 2013-09-12 08:57 ./usr/share/doc/mrbayes/copyright
-rw-r--r-- root/root 1731 2014-10-25 08:07 ./usr/share/doc/mrbayes/changelog.Debian.gz
drwxr-xr-x root/root 0 2014-11-05 18:09 ./usr/share/man/
drwxr-xr-x root/root 0 2014-11-05 18:09 ./usr/share/man/man1/
-rw-r--r-- root/root 206 2014-11-05 18:09 ./usr/share/man/man1/mb.1.gz
mrbayes-mpi_3.2.3+dfsg-1_armhf.deb
──────────────────────────────────
new debian package, version 2.0.
size 489814 bytes: control archive=1029 bytes.
1009 bytes, 21 lines control
399 bytes, 6 lines md5sums
Package: mrbayes-mpi
Source: mrbayes
Version: 3.2.3+dfsg-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1403
Depends: libc6 (>= 2.7), libhmsbeagle1, libhwloc5, libopenmpi1.6, libreadline6 (>= 6.0), mpi-default-bin
Suggests: mpi-default, mrbayes-doc
Section: science
Priority: optional
Homepage: http://mrbayes.csit.fsu.edu/
Description: Bayesian Inference of Phylogeny - mpi version
Bayesian inference of phylogeny is based upon a quantity called the posterior
probability distribution of trees, which is the probability of a tree
conditioned on the observations. The conditioning is accomplished using
Bayes's theorem. The posterior probability distribution of trees is
impossible to calculate analytically; instead, MrBayes uses a simulation
technique called Markov chain Monte Carlo (or MCMC) to approximate the
posterior probabilities of trees.
.
This package offers a binary compiled for parallel computation with MPI.
drwxr-xr-x root/root 0 2014-11-05 18:09 ./
drwxr-xr-x root/root 0 2014-11-05 18:09 ./usr/
drwxr-xr-x root/root 0 2014-11-05 18:09 ./usr/lib/
drwxr-xr-x root/root 0 2014-11-05 18:09 ./usr/lib/mrbayes-mpi/
-rwxr-xr-x root/root 1431832 2014-11-05 18:09 ./usr/lib/mrbayes-mpi/mb-mpi
drwxr-xr-x root/root 0 2014-11-05 18:09 ./usr/bin/
-rwxr-xr-x root/root 162 2013-09-12 08:57 ./usr/bin/mb-mpi
drwxr-xr-x root/root 0 2014-11-05 18:09 ./usr/share/
drwxr-xr-x root/root 0 2014-11-05 18:09 ./usr/share/doc/
drwxr-xr-x root/root 0 2014-11-05 18:09 ./usr/share/doc/mrbayes-mpi/
-rw-r--r-- root/root 348 2013-09-12 08:57 ./usr/share/doc/mrbayes-mpi/README.Debian
-rw-r--r-- root/root 1482 2013-09-12 08:57 ./usr/share/doc/mrbayes-mpi/copyright
-rw-r--r-- root/root 1731 2014-10-25 08:07 ./usr/share/doc/mrbayes-mpi/changelog.Debian.gz
drwxr-xr-x root/root 0 2014-11-05 18:09 ./usr/share/man/
drwxr-xr-x root/root 0 2014-11-05 18:09 ./usr/share/man/man1/
-rw-r--r-- root/root 226 2014-11-05 18:09 ./usr/share/man/man1/mb-mpi.1.gz
mrbayes-dbg_3.2.3+dfsg-1_armhf.deb
──────────────────────────────────
new debian package, version 2.0.
size 1601022 bytes: control archive=1057 bytes.
1190 bytes, 23 lines control
362 bytes, 4 lines md5sums
Package: mrbayes-dbg
Source: mrbayes
Version: 3.2.3+dfsg-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1707
Depends: mrbayes (= 3.2.3+dfsg-1) | mrbayes-mpi (= 3.2.3+dfsg-1)
Breaks: mrbayes (>> 3.2.3+dfsg-1), mrbayes (<< 3.2.3+dfsg-1), mrbayes-mpi (>> 3.2.3+dfsg-1), mrbayes-mpi (<< 3.2.3+dfsg-1)
Section: debug
Priority: extra
Homepage: http://mrbayes.csit.fsu.edu/
Description: Bayesian Inference of Phylogeny - debug symbols
Bayesian inference of phylogeny is based upon a quantity called the posterior
probability distribution of trees, which is the probability of a tree
conditioned on the observations. The conditioning is accomplished using
Bayes's theorem. The posterior probability distribution of trees is
impossible to calculate analytically; instead, MrBayes uses a simulation
technique called Markov chain Monte Carlo (or MCMC) to approximate the
posterior probabilities of trees.
.
The package provides the debug symbols that are otherwise stripped from
the binaries to reduce the footprint of the package. This package can be
installed to help debugging of problems when running mrbayes.
drwxr-xr-x root/root 0 2014-11-05 18:09 ./
drwxr-xr-x root/root 0 2014-11-05 18:09 ./usr/
drwxr-xr-x root/root 0 2014-11-05 18:09 ./usr/share/
drwxr-xr-x root/root 0 2014-11-05 18:09 ./usr/share/doc/
drwxr-xr-x root/root 0 2014-11-05 18:09 ./usr/share/doc/mrbayes-dbg/
-rw-r--r-- root/root 1482 2013-09-12 08:57 ./usr/share/doc/mrbayes-dbg/copyright
-rw-r--r-- root/root 1731 2014-10-25 08:07 ./usr/share/doc/mrbayes-dbg/changelog.Debian.gz
drwxr-xr-x root/root 0 2014-11-05 18:09 ./usr/lib/
drwxr-xr-x root/root 0 2014-11-05 18:09 ./usr/lib/debug/
drwxr-xr-x root/root 0 2014-11-05 18:09 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2014-11-05 18:09 ./usr/lib/debug/.build-id/69/
-rw-r--r-- root/root 865132 2014-11-05 18:09 ./usr/lib/debug/.build-id/69/df27d09ad2f26e8b18b7c93e7dce7d7775b614.debug
drwxr-xr-x root/root 0 2014-11-05 18:09 ./usr/lib/debug/.build-id/c2/
-rw-r--r-- root/root 878300 2014-11-05 18:09 ./usr/lib/debug/.build-id/c2/e27bc9294b01074b962892759bd04b36eb1ca6.debug
┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
┌──────────────────────────────────────────────────────────────────────────────┐
│ Cleanup │
└──────────────────────────────────────────────────────────────────────────────┘
Purging /«BUILDDIR»
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary │
└──────────────────────────────────────────────────────────────────────────────┘
Build Architecture: armhf
Build-Space: 27424
Build-Time: 1431
Distribution: jessie-staging
Host Architecture: armhf
Install-Time: 292
Job: mrbayes_3.2.3+dfsg-1
Machine Architecture: armhf
Package: mrbayes
Package-Time: 1778
Source-Version: 3.2.3+dfsg-1
Space: 27424
Status: successful
Version: 3.2.3+dfsg-1
────────────────────────────────────────────────────────────────────────────────
Finished at 20141105-1810
Build needed 00:29:38, 27424k disc space