mrbayes →
3.2.2+dfsg-1 →
armhf → 2014-01-20 05:37:31
sbuild (Debian sbuild) 0.63.2 (18 Aug 2012) on testbuildd.raspbian.org
╔══════════════════════════════════════════════════════════════════════════════╗
║ mrbayes 3.2.2+dfsg-1 (armhf) 20 Jan 2014 05:14 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: mrbayes
Version: 3.2.2+dfsg-1
Source Version: 3.2.2+dfsg-1
Distribution: jessie-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'build/mrbayes-NWVxhx/mrbayes-3.2.2+dfsg' with '«PKGBUILDDIR»'
I: NOTICE: Log filtering will replace 'build/mrbayes-NWVxhx' with '«BUILDDIR»'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/jessie-staging-armhf-sbuild-96f43bad-5d04-4c64-beec-1cb25f1875ac' with '«CHROOT»'
┌──────────────────────────────────────────────────────────────────────────────┐
│ Update chroot │
└──────────────────────────────────────────────────────────────────────────────┘
Get:1 http://172.17.0.1 jessie-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1 jessie-staging/main Sources [7195 kB]
Get:3 http://172.17.0.1 jessie-staging/main armhf Packages [8319 kB]
Ign http://172.17.0.1 jessie-staging/main Translation-en
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Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Fetch source files │
└──────────────────────────────────────────────────────────────────────────────┘
Check APT
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Checking available source versions...
Download source files with APT
──────────────────────────────
Reading package lists...
Building dependency tree...
Reading state information...
NOTICE: 'mrbayes' packaging is maintained in the 'Svn' version control system at:
svn://anonscm.debian.org/debian-med/trunk/packages/mrbayes/trunk/
Need to get 2248 kB of source archives.
Get:1 http://172.17.0.1/private/ jessie-staging/main mrbayes 3.2.2+dfsg-1 (dsc) [1750 B]
Get:2 http://172.17.0.1/private/ jessie-staging/main mrbayes 3.2.2+dfsg-1 (tar) [2240 kB]
Get:3 http://172.17.0.1/private/ jessie-staging/main mrbayes 3.2.2+dfsg-1 (diff) [6464 B]
Fetched 2248 kB in 9s (243 kB/s)
Download complete and in download only mode
Check arch
──────────
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-nPKO2U/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install core build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 1 newly installed, 0 to remove and 12 not upgraded.
Need to get 0 B/764 B of archives.
After this operation, 0 B of additional disk space will be used.
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12149 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), libreadline-dev, mpi-default-dev, libhmsbeagle-dev (<< 2.1-1) | libhmsbeagle-dev (>= 2.1-2), autoconf, automake
Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), libreadline-dev, mpi-default-dev, libhmsbeagle-dev (<< 2.1-1) | libhmsbeagle-dev (>= 2.1-2), autoconf, automake
dpkg-deb: building package `sbuild-build-depends-mrbayes-dummy' in `/«BUILDDIR»/resolver-D1YuIO/apt_archive/sbuild-build-depends-mrbayes-dummy.deb'.
OK
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install mrbayes build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
adduser autoconf automake autotools-dev bsdmainutils cpp-4.8 debhelper file
g++-4.8 gcc-4.8 gcc-4.8-base gettext gettext-base groff-base intltool-debian
libasan0 libasprintf0c2 libatomic1 libcr0 libcroco3 libffi6 libgcc-4.8-dev
libgcc1 libgfortran3 libglib2.0-0 libgomp1 libhmsbeagle-dev libhmsbeagle1
libhwloc-dev libhwloc5 libibverbs-dev libibverbs1 libltdl7 libmagic1
libopenmpi-dev libopenmpi1.6 libpci-dev libpci3 libpipeline1 libreadline-dev
libreadline6-dev libsctp1 libsigsegv2 libstdc++-4.8-dev libstdc++6
libtinfo-dev libtorque2 libunistring0 libxml2 libxml2-dev m4 man-db
mpi-default-dev openmpi-common po-debconf zlib1g-dev
Suggested packages:
liblocale-gettext-perl autoconf2.13 autoconf-archive gnu-standards
autoconf-doc libtool wamerican wordlist whois vacation gcc-4.8-locales
dh-make gcc-4.8-doc libstdc++6-4.8-dbg libgcc1-dbg libgomp1-dbg libitm1-dbg
libatomic1-dbg libasan0-dbg libtsan0-dbg libbacktrace1-dbg libquadmath-dbg
gettext-doc groff blcr-dkms libhwloc-contrib-plugins libstdc++-4.8-doc
pkg-config less www-browser libmail-box-perl
Recommended packages:
curl wget lynx-cur autopoint libasprintf-dev libgettextpo-dev
libglib2.0-data shared-mime-info libhwloc-plugins lksctp-tools xml-core
libmail-sendmail-perl
The following NEW packages will be installed:
adduser autoconf automake autotools-dev bsdmainutils debhelper file gettext
gettext-base groff-base intltool-debian libasprintf0c2 libcr0 libcroco3
libffi6 libgfortran3 libglib2.0-0 libhmsbeagle-dev libhmsbeagle1
libhwloc-dev libhwloc5 libibverbs-dev libibverbs1 libltdl7 libmagic1
libopenmpi-dev libopenmpi1.6 libpci-dev libpci3 libpipeline1 libreadline-dev
libreadline6-dev libsctp1 libsigsegv2 libtinfo-dev libtorque2 libunistring0
libxml2 libxml2-dev m4 man-db mpi-default-dev openmpi-common po-debconf
sbuild-build-depends-mrbayes-dummy zlib1g-dev
The following packages will be upgraded:
cpp-4.8 g++-4.8 gcc-4.8 gcc-4.8-base libasan0 libatomic1 libgcc-4.8-dev
libgcc1 libgomp1 libstdc++-4.8-dev libstdc++6
11 upgraded, 46 newly installed, 0 to remove and 1 not upgraded.
Need to get 29.3 MB/29.3 MB of archives.
After this operation, 43.4 MB of additional disk space will be used.
Get:1 http://172.17.0.1/private/ jessie-staging/main libgomp1 armhf 4.8.2-14 [22.4 kB]
Get:2 http://172.17.0.1/private/ jessie-staging/main gcc-4.8-base armhf 4.8.2-14 [152 kB]
Get:3 http://172.17.0.1/private/ jessie-staging/main libstdc++6 armhf 4.8.2-14 [213 kB]
Get:4 http://172.17.0.1/private/ jessie-staging/main libasan0 armhf 4.8.2-14 [55.9 kB]
Get:5 http://172.17.0.1/private/ jessie-staging/main libatomic1 armhf 4.8.2-14 [5752 B]
Get:6 http://172.17.0.1/private/ jessie-staging/main cpp-4.8 armhf 4.8.2-14 [3854 kB]
Get:7 http://172.17.0.1/private/ jessie-staging/main libstdc++-4.8-dev armhf 4.8.2-14 [1082 kB]
Get:8 http://172.17.0.1/private/ jessie-staging/main g++-4.8 armhf 4.8.2-14 [4935 kB]
Get:9 http://172.17.0.1/private/ jessie-staging/main gcc-4.8 armhf 4.8.2-14 [3947 kB]
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Get:13 http://172.17.0.1/private/ jessie-staging/main groff-base armhf 1.22.2-4 [958 kB]
Get:14 http://172.17.0.1/private/ jessie-staging/main bsdmainutils armhf 9.0.5 [206 kB]
Get:15 http://172.17.0.1/private/ jessie-staging/main man-db armhf 2.6.5-3 [943 kB]
Get:16 http://172.17.0.1/private/ jessie-staging/main libasprintf0c2 armhf 0.18.3.1-2 [29.5 kB]
Get:17 http://172.17.0.1/private/ jessie-staging/main libmagic1 armhf 1:5.14-2 [213 kB]
Get:18 http://172.17.0.1/private/ jessie-staging/main libpci3 armhf 1:3.2.1-1 [52.7 kB]
Get:19 http://172.17.0.1/private/ jessie-staging/main libxml2 armhf 2.9.1+dfsg1-3 [836 kB]
Get:20 http://172.17.0.1/private/ jessie-staging/main libffi6 armhf 3.0.13-4 [19.8 kB]
Get:21 http://172.17.0.1/private/ jessie-staging/main libglib2.0-0 armhf 2.36.4-1 [1907 kB]
Get:22 http://172.17.0.1/private/ jessie-staging/main libcroco3 armhf 0.6.8-2 [119 kB]
Get:23 http://172.17.0.1/private/ jessie-staging/main libgfortran3 armhf 4.8.2-14 [153 kB]
Get:24 http://172.17.0.1/private/ jessie-staging/main libhmsbeagle1 armhf 2.1-2 [49.6 kB]
Get:25 http://172.17.0.1/private/ jessie-staging/main libltdl7 armhf 2.4.2-1.6 [349 kB]
Get:26 http://172.17.0.1/private/ jessie-staging/main libsctp1 armhf 1.0.15+dfsg-1 [27.8 kB]
Get:27 http://172.17.0.1/private/ jessie-staging/main libsigsegv2 armhf 2.10-2 [29.2 kB]
Get:28 http://172.17.0.1/private/ jessie-staging/main libunistring0 armhf 0.9.3-5 [408 kB]
Get:29 http://172.17.0.1/private/ jessie-staging/main libhwloc5 armhf 1.8-1 [86.4 kB]
Get:30 http://172.17.0.1/private/ jessie-staging/main adduser all 3.113+nmu3 [264 kB]
Get:31 http://172.17.0.1/private/ jessie-staging/main file armhf 1:5.14-2 [53.8 kB]
Get:32 http://172.17.0.1/private/ jessie-staging/main gettext-base armhf 0.18.3.1-2 [135 kB]
Get:33 http://172.17.0.1/private/ jessie-staging/main m4 armhf 1.4.16-5 [245 kB]
Get:34 http://172.17.0.1/private/ jessie-staging/main autoconf all 2.69-2 [339 kB]
Get:35 http://172.17.0.1/private/ jessie-staging/main autotools-dev all 20130810.1 [69.6 kB]
Get:36 http://172.17.0.1/private/ jessie-staging/main automake all 1:1.14.1-2 [724 kB]
Get:37 http://172.17.0.1/private/ jessie-staging/main gettext armhf 0.18.3.1-2 [1829 kB]
Get:38 http://172.17.0.1/private/ jessie-staging/main intltool-debian all 0.35.0+20060710.1 [29.8 kB]
Get:39 http://172.17.0.1/private/ jessie-staging/main po-debconf all 1.0.16+nmu2 [223 kB]
Get:40 http://172.17.0.1/private/ jessie-staging/main debhelper all 9.20131227 [687 kB]
Get:41 http://172.17.0.1/private/ jessie-staging/main libcr0 armhf 0.8.5-2.1 [33.5 kB]
Get:42 http://172.17.0.1/private/ jessie-staging/main libhmsbeagle-dev armhf 2.1-2 [151 kB]
Get:43 http://172.17.0.1/private/ jessie-staging/main zlib1g-dev armhf 1:1.2.8.dfsg-1 [212 kB]
Get:44 http://172.17.0.1/private/ jessie-staging/main libpci-dev armhf 1:3.2.1-1 [74.8 kB]
Get:45 http://172.17.0.1/private/ jessie-staging/main libtinfo-dev armhf 5.9+20130608-1 [92.5 kB]
Get:46 http://172.17.0.1/private/ jessie-staging/main libreadline6-dev armhf 6.2+dfsg-0.1 [164 kB]
Get:47 http://172.17.0.1/private/ jessie-staging/main libreadline-dev armhf 6.2+dfsg-0.1 [898 B]
Get:48 http://172.17.0.1/private/ jessie-staging/main libtorque2 armhf 2.4.16+dfsg-1.3 [108 kB]
Get:49 http://172.17.0.1/private/ jessie-staging/main libxml2-dev armhf 2.9.1+dfsg1-3 [837 kB]
Get:50 http://172.17.0.1/private/ jessie-staging/main libhwloc-dev armhf 1.8-1 [158 kB]
Get:51 http://172.17.0.1/private/ jessie-staging/main libibverbs1 armhf 1.1.7-1 [31.0 kB]
Get:52 http://172.17.0.1/private/ jessie-staging/main libibverbs-dev armhf 1.1.7-1 [82.3 kB]
Get:53 http://172.17.0.1/private/ jessie-staging/main libopenmpi1.6 armhf 1.6.5-8+rpi1 [1226 kB]
Get:54 http://172.17.0.1/private/ jessie-staging/main openmpi-common all 1.6.5-8+rpi1 [111 kB]
Get:55 http://172.17.0.1/private/ jessie-staging/main libopenmpi-dev armhf 1.6.5-8+rpi1 [447 kB]
Get:56 http://172.17.0.1/private/ jessie-staging/main mpi-default-dev armhf 1.0.2 [3802 B]
debconf: delaying package configuration, since apt-utils is not installed
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Preparing to unpack .../libreadline6-dev_6.2+dfsg-0.1_armhf.deb ...
Unpacking libreadline6-dev:armhf (6.2+dfsg-0.1) ...
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Unpacking libreadline-dev:armhf (6.2+dfsg-0.1) ...
Selecting previously unselected package libtorque2.
Preparing to unpack .../libtorque2_2.4.16+dfsg-1.3_armhf.deb ...
Unpacking libtorque2 (2.4.16+dfsg-1.3) ...
Selecting previously unselected package libxml2-dev:armhf.
Preparing to unpack .../libxml2-dev_2.9.1+dfsg1-3_armhf.deb ...
Unpacking libxml2-dev:armhf (2.9.1+dfsg1-3) ...
Selecting previously unselected package libhwloc-dev:armhf.
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Unpacking libhwloc-dev:armhf (1.8-1) ...
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Unpacking libibverbs1 (1.1.7-1) ...
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Unpacking libibverbs-dev (1.1.7-1) ...
Selecting previously unselected package libopenmpi1.6.
Preparing to unpack .../libopenmpi1.6_1.6.5-8+rpi1_armhf.deb ...
Unpacking libopenmpi1.6 (1.6.5-8+rpi1) ...
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Preparing to unpack .../openmpi-common_1.6.5-8+rpi1_all.deb ...
Unpacking openmpi-common (1.6.5-8+rpi1) ...
Selecting previously unselected package libopenmpi-dev.
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Unpacking libopenmpi-dev (1.6.5-8+rpi1) ...
Selecting previously unselected package mpi-default-dev.
Preparing to unpack .../mpi-default-dev_1.0.2_armhf.deb ...
Unpacking mpi-default-dev (1.0.2) ...
Selecting previously unselected package sbuild-build-depends-mrbayes-dummy.
Preparing to unpack .../sbuild-build-depends-mrbayes-dummy.deb ...
Unpacking sbuild-build-depends-mrbayes-dummy (0.invalid.0) ...
Setting up libgomp1:armhf (4.8.2-14) ...
Setting up libasan0:armhf (4.8.2-14) ...
Setting up libatomic1:armhf (4.8.2-14) ...
Setting up cpp-4.8 (4.8.2-14) ...
Setting up libgcc-4.8-dev:armhf (4.8.2-14) ...
Setting up libstdc++-4.8-dev:armhf (4.8.2-14) ...
Setting up gcc-4.8 (4.8.2-14) ...
Setting up g++-4.8 (4.8.2-14) ...
Setting up libpipeline1:armhf (1.2.6-1) ...
Setting up groff-base (1.22.2-4) ...
Setting up bsdmainutils (9.0.5) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up man-db (2.6.5-3) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libasprintf0c2:armhf (0.18.3.1-2) ...
Setting up libmagic1:armhf (1:5.14-2) ...
Setting up libpci3:armhf (1:3.2.1-1) ...
Setting up libxml2:armhf (2.9.1+dfsg1-3) ...
Setting up libffi6:armhf (3.0.13-4) ...
Setting up libglib2.0-0:armhf (2.36.4-1) ...
No schema files found: doing nothing.
Setting up libcroco3:armhf (0.6.8-2) ...
Setting up libgfortran3:armhf (4.8.2-14) ...
Setting up libhmsbeagle1 (2.1-2) ...
Setting up libltdl7:armhf (2.4.2-1.6) ...
Setting up libsctp1:armhf (1.0.15+dfsg-1) ...
Setting up libsigsegv2:armhf (2.10-2) ...
Setting up libunistring0:armhf (0.9.3-5) ...
Setting up libhwloc5:armhf (1.8-1) ...
Setting up adduser (3.113+nmu3) ...
Setting up file (1:5.14-2) ...
Setting up gettext-base (0.18.3.1-2) ...
Setting up m4 (1.4.16-5) ...
Setting up autoconf (2.69-2) ...
Setting up autotools-dev (20130810.1) ...
Setting up automake (1:1.14.1-2) ...
update-alternatives: using /usr/bin/automake-1.14 to provide /usr/bin/automake (automake) in auto mode
Setting up gettext (0.18.3.1-2) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu2) ...
Setting up debhelper (9.20131227) ...
Setting up libcr0 (0.8.5-2.1) ...
Setting up libhmsbeagle-dev (2.1-2) ...
Setting up zlib1g-dev:armhf (1:1.2.8.dfsg-1) ...
Setting up libpci-dev (1:3.2.1-1) ...
Setting up libtinfo-dev:armhf (5.9+20130608-1) ...
Setting up libreadline6-dev:armhf (6.2+dfsg-0.1) ...
Setting up libreadline-dev:armhf (6.2+dfsg-0.1) ...
Setting up libtorque2 (2.4.16+dfsg-1.3) ...
Setting up libxml2-dev:armhf (2.9.1+dfsg1-3) ...
Setting up libhwloc-dev:armhf (1.8-1) ...
Setting up libibverbs1 (1.1.7-1) ...
Setting up libibverbs-dev (1.1.7-1) ...
Setting up libopenmpi1.6 (1.6.5-8+rpi1) ...
Setting up openmpi-common (1.6.5-8+rpi1) ...
Setting up libopenmpi-dev (1.6.5-8+rpi1) ...
update-alternatives: using /usr/lib/openmpi/include to provide /usr/include/mpi (mpi) in auto mode
Setting up mpi-default-dev (1.0.2) ...
Setting up sbuild-build-depends-mrbayes-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.17-97) ...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build environment │
└──────────────────────────────────────────────────────────────────────────────┘
Kernel: Linux 3.11.0-armv7-x13 armhf (armv7l)
Toolchain package versions: binutils_2.24-2 dpkg-dev_1.17.5+rpi1 g++-4.6_4.6.4-5+rpi1 g++-4.8_4.8.2-14 gcc-4.6_4.6.4-5+rpi1 gcc-4.8_4.8.2-14 libc6-dev_2.17-97 libstdc++-4.8-dev_4.8.2-14 libstdc++6_4.8.2-14 libstdc++6-4.6-dev_4.6.4-5+rpi1 linux-libc-dev_3.12.6-2+rpi1
Package versions: adduser_3.113+nmu3 apt_0.9.14.2 autoconf_2.69-2 automake_1:1.14.1-2 autotools-dev_20130810.1 base-files_7.2+rpi1 base-passwd_3.5.28 bash_4.2+dfsg-1 binutils_2.24-2 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.5 build-essential_11.6 bzip2_1.0.6-5 coreutils_8.21-1 cpio_2.11+dfsg-1 cpp_4:4.8.2-1 cpp-4.6_4.6.4-5+rpi1 cpp-4.8_4.8.2-14 dash_0.5.7-3+nmu1 debconf_1.5.52 debfoster_2.7-1.2 debhelper_9.20131227 debianutils_4.4 diffutils_1:3.3-1 dpkg_1.17.5+rpi1 dpkg-dev_1.17.5+rpi1 e2fslibs_1.42.9-2 e2fsprogs_1.42.9-2 fakeroot_1.18.4-2 file_1:5.14-2 findutils_4.4.2-7 g++_4:4.8.2-1 g++-4.6_4.6.4-5+rpi1 g++-4.8_4.8.2-14 gcc_4:4.8.2-1 gcc-4.5-base_4.5.3-12+rpi1 gcc-4.6_4.6.4-5+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-9+rpi1 gcc-4.8_4.8.2-14 gcc-4.8-base_4.8.2-14 gettext_0.18.3.1-2 gettext-base_0.18.3.1-2 gnupg_1.4.16-1 gpgv_1.4.16-1 grep_2.15-2 groff-base_1.22.2-4 gzip_1.6-3 hostname_3.15 initramfs-tools_0.115 initscripts_2.88dsf-45 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.1 klibc-utils_2.0.2-1+rpi1 kmod_16-2 libacl1_2.2.52-1 libapt-pkg4.12_0.9.14.2 libarchive-extract-perl_0.70-1 libasan0_4.8.2-14 libasprintf0c2_0.18.3.1-2 libatomic1_4.8.2-14 libattr1_1:2.4.47-1 libaudit-common_1:2.3.2-3 libaudit1_1:2.3.2-3 libblkid1_2.20.1-5.5 libbz2-1.0_1.0.6-5 libc-bin_2.17-97 libc-dev-bin_2.17-97 libc6_2.17-97 libc6-dev_2.17-97 libcap2_1:2.22-1.2 libclass-isa-perl_0.36-5 libcloog-isl4_0.18.1-3 libcomerr2_1.42.9-2 libcr0_0.8.5-2.1 libcroco3_0.6.8-2 libdb5.1_5.1.29-6 libdbus-1-3_1.7.10-2 libdpkg-perl_1.17.5+rpi1 libffi6_3.0.13-4 libgc1c2_1:7.2d-6 libgcc-4.8-dev_4.8.2-14 libgcc1_1:4.8.2-14 libgdbm3_1.8.3-12 libgfortran3_4.8.2-14 libglib2.0-0_2.36.4-1 libgmp10_2:5.1.3+dfsg-1 libgomp1_4.8.2-14 libhmsbeagle-dev_2.1-2 libhmsbeagle1_2.1-2 libhwloc-dev_1.8-1 libhwloc5_1.8-1 libibverbs-dev_1.1.7-1 libibverbs1_1.1.7-1 libisl10_0.12.1-2 libklibc_2.0.2-1+rpi1 libkmod2_16-2 liblog-message-simple-perl_0.10-1 libltdl7_2.4.2-1.6 liblzma5_5.1.1alpha+20120614-2 libmagic1_1:5.14-2 libmodule-pluggable-perl_5.1-1 libmount1_2.20.1-5.5 libmpc2_0.9-4 libmpc3_1.0.1-1 libmpfr4_3.1.2-1 libncurses5_5.9+20130608-1 libncursesw5_5.9+20130608-1 libopenmpi-dev_1.6.5-8+rpi1 libopenmpi1.6_1.6.5-8+rpi1 libpam-modules_1.1.3-9 libpam-modules-bin_1.1.3-9 libpam-runtime_1.1.3-9 libpam0g_1.1.3-9 libpci-dev_1:3.2.1-1 libpci3_1:3.2.1-1 libpcre3_1:8.31-2 libpipeline1_1.2.6-1 libpod-latex-perl_0.61-1 libprocps0_1:3.3.4-2 libreadline-dev_6.2+dfsg-0.1 libreadline6_6.2+dfsg-0.1 libreadline6-dev_6.2+dfsg-0.1 libsctp1_1.0.15+dfsg-1 libselinux1_2.2.2-1 libsemanage-common_2.2-1 libsemanage1_2.2-1 libsepol1_2.2-1 libsigsegv2_2.10-2 libslang2_2.2.4-16 libss2_1.42.9-2 libstdc++-4.8-dev_4.8.2-14 libstdc++6_4.8.2-14 libstdc++6-4.6-dev_4.6.4-5+rpi1 libswitch-perl_2.16-2 libterm-ui-perl_0.42-1 libtimedate-perl_2.3000-1 libtinfo-dev_5.9+20130608-1 libtinfo5_5.9+20130608-1 libtorque2_2.4.16+dfsg-1.3 libudev0_175-7.2 libudev1_204-6 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-23.3 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5.5 libxml2_2.9.1+dfsg1-3 libxml2-dev_2.9.1+dfsg1-3 linux-libc-dev_3.12.6-2+rpi1 login_1:4.1.5.1-1 lsb-base_4.1+Debian12+rpi1 m4_1.4.16-5 make_3.81-8.3 makedev_2.3.1-93 man-db_2.6.5-3 mawk_1.3.3-17 mount_2.20.1-5.5 mpi-default-dev_1.0.2 multiarch-support_2.17-97 ncurses-base_5.9+20130608-1 ncurses-bin_5.9+20130608-1 openmpi-common_1.6.5-8+rpi1 passwd_1:4.1.5.1-1 patch_2.7.1-4 perl_5.18.1-5 perl-base_5.18.1-5 perl-modules_5.18.1-5 plymouth_0.8.8-6+deb8u3 po-debconf_1.0.16+nmu2 procps_1:3.3.4-2 raspbian-archive-keyring_20120528.2 readline-common_6.2+dfsg-0.1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-mrbayes-dummy_0.invalid.0 sed_4.2.2-3 sensible-utils_0.0.9 sysv-rc_2.88dsf-45 sysvinit_2.88dsf-45 sysvinit-core_2.88dsf-45 sysvinit-utils_2.88dsf-45 tar_1.26+dfsg-8 tzdata_2013i-1 udev_204-6 util-linux_2.20.1-5.5 xz-utils_5.1.1alpha+20120614-2 zlib1g_1:1.2.8.dfsg-1 zlib1g-dev_1:1.2.8.dfsg-1
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
└──────────────────────────────────────────────────────────────────────────────┘
Unpack source
─────────────
gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Tue Jan 14 08:22:41 2014 UTC using DSA key ID C09FD35A
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./mrbayes_3.2.2+dfsg-1.dsc
dpkg-source: info: extracting mrbayes in mrbayes-3.2.2+dfsg
dpkg-source: info: unpacking mrbayes_3.2.2+dfsg.orig.tar.xz
dpkg-source: info: unpacking mrbayes_3.2.2+dfsg-1.debian.tar.gz
dpkg-source: info: applying as-needed.patch
dpkg-source: info: applying ldlibs.patch
Check disc space
────────────────
Sufficient free space for build
User Environment
────────────────
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LANG=en_US.UTF-8
LC_ALL=POSIX
LOGNAME=root
LS_OPTIONS=--color=auto
MAIL=/var/mail/root
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/root
SCHROOT_ALIAS_NAME=jessie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=jessie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=111
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=jessie-staging-armhf-sbuild-96f43bad-5d04-4c64-beec-1cb25f1875ac
SCHROOT_UID=106
SCHROOT_USER=buildd
SHELL=/bin/sh
SHLVL=1
SSH_CLIENT=192.168.1.2 41755 22
SSH_CONNECTION=192.168.1.2 41755 192.168.1.45 22
SSH_TTY=/dev/pts/1
TERM=xterm
USER=buildd
XDG_SESSION_COOKIE=106ef489ba27ee071ab233f6518d3bce-1387159518.865139-1344995867
_=/etc/init.d/buildd
dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package mrbayes
dpkg-buildpackage: source version 3.2.2+dfsg-1
dpkg-buildpackage: source distribution unstable
dpkg-source --before-build mrbayes-3.2.2+dfsg
dpkg-buildpackage: host architecture armhf
fakeroot debian/rules clean
dh clean --sourcedirectory=src
dh_testdir -O--sourcedirectory=src
debian/rules override_dh_auto_clean
make[1]: Entering directory `/«BUILDDIR»/mrbayes-3.2.2+dfsg'
( cd src ; /usr/bin/make -f Makefile.in distclean )
make[2]: Entering directory `/«BUILDDIR»/mrbayes-3.2.2+dfsg/src'
rm -f *.o *~ mb
rm -f Makefile config.log config.status config.cache config.h
make[2]: Leaving directory `/«BUILDDIR»/mrbayes-3.2.2+dfsg/src'
rm -f src/configure
rm -f mb mb-mpi src/mb
make[1]: Leaving directory `/«BUILDDIR»/mrbayes-3.2.2+dfsg'
dh_clean -O--sourcedirectory=src
debian/rules build-arch
dh build-arch --sourcedirectory=src
dh_testdir -a -O--sourcedirectory=src
debian/rules override_dh_auto_configure
make[1]: Entering directory `/«BUILDDIR»/mrbayes-3.2.2+dfsg'
#Configure for MPI at first
( cd src ; autoconf )
dh_auto_configure -- --with-beagle=/usr --enable-mpi=yes --enable-debug=yes
configure: WARNING: unrecognized options: --disable-maintainer-mode, --disable-dependency-tracking
configure:
NOTICE: Because the variable $CFLAGS is defined in your shell, the default MrBayes flags will be overridden.
To ensure optimal performance, please check that your $CFLAGS variable is set correctly. Alternatively, unset the
$CFLAGS variable in your shell in order to use the default MrBayes compiler options.
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for exp in -lm... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking for mpicc... yes
checking for SSE support... no
checking for /usr/include/libhmsbeagle/libhmsbeagle/beagle.h... yes
checking for /usr/include/libhmsbeagle/libhmsbeagle/platform.h... yes
checking for /usr/lib... yes
checking for readline in -lreadline... yes
checking for rl_completion_matches function... yes
checking for 32 or 64 bits cpu... 32
configure: creating ./config.status
config.status: creating Makefile
config.status: creating config.h
configure: WARNING: unrecognized options: --disable-maintainer-mode, --disable-dependency-tracking
make[1]: Leaving directory `/«BUILDDIR»/mrbayes-3.2.2+dfsg'
debian/rules override_dh_auto_build
make[1]: Entering directory `/«BUILDDIR»/mrbayes-3.2.2+dfsg'
# build mb-mpi (from initial config)
LIBS="-Wl,--as-needed" dh_auto_build
make[2]: Entering directory `/«BUILDDIR»/mrbayes-3.2.2+dfsg/src'
mpicc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o mb.o mb.c
mpicc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o bayes.o bayes.c
mpicc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o command.o command.c
mpicc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o mbmath.o mbmath.c
mpicc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o mcmc.o mcmc.c
mpicc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o model.o model.c
mpicc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o plot.o plot.c
mpicc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o sump.o sump.c
sump.c: In function 'DoSumSs':
sump.c:806:14: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result]
scanf("%d",&j);
^
sump.c:814:22: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result]
scanf("%f",&tmpf);
^
sump.c:912:14: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result]
scanf("%d",&j);
^
sump.c:918:18: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result]
scanf("%d",&j);
^
sump.c:939:18: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result]
scanf("%d",&j);
^
sump.c:949:22: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result]
scanf("%d",&stepBurnin);
^
mpicc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o sumt.o sumt.c
mpicc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o tree.o tree.c
mpicc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o utils.o utils.c
mpicc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o mbbeagle.o mbbeagle.c
mpicc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o best.o best.c
mpicc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -o mb mb.o bayes.o command.o mbmath.o mcmc.o model.o plot.o sump.o sumt.o tree.o utils.o mbbeagle.o best.o -Wl,-z,relro -L/usr/lib -lhmsbeagle -lreadline -lm
make[2]: Leaving directory `/«BUILDDIR»/mrbayes-3.2.2+dfsg/src'
mv src/mb ./mb-mpi
# Now - build mb
( cd src ; make clean )
make[2]: Entering directory `/«BUILDDIR»/mrbayes-3.2.2+dfsg/src'
rm -f *.o *~ mb
make[2]: Leaving directory `/«BUILDDIR»/mrbayes-3.2.2+dfsg/src'
dh_auto_configure -- --with-beagle=/usr --enable-mpi=no --enable-debug=yes
configure: WARNING: unrecognized options: --disable-maintainer-mode, --disable-dependency-tracking
configure:
NOTICE: Because the variable $CFLAGS is defined in your shell, the default MrBayes flags will be overridden.
To ensure optimal performance, please check that your $CFLAGS variable is set correctly. Alternatively, unset the
$CFLAGS variable in your shell in order to use the default MrBayes compiler options.
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for exp in -lm... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking for SSE support... no
checking for /usr/include/libhmsbeagle/libhmsbeagle/beagle.h... yes
checking for /usr/include/libhmsbeagle/libhmsbeagle/platform.h... yes
checking for /usr/lib... yes
checking for readline in -lreadline... yes
checking for rl_completion_matches function... yes
checking for 32 or 64 bits cpu... 32
configure: creating ./config.status
config.status: creating Makefile
config.status: creating config.h
configure: WARNING: unrecognized options: --disable-maintainer-mode, --disable-dependency-tracking
LIBS="-Wl,--as-needed" dh_auto_build
make[2]: Entering directory `/«BUILDDIR»/mrbayes-3.2.2+dfsg/src'
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o mb.o mb.c
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o bayes.o bayes.c
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o command.o command.c
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o mbmath.o mbmath.c
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o mcmc.o mcmc.c
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o model.o model.c
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o plot.o plot.c
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o sump.o sump.c
sump.c: In function 'DoSumSs':
sump.c:806:14: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result]
scanf("%d",&j);
^
sump.c:814:22: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result]
scanf("%f",&tmpf);
^
sump.c:912:14: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result]
scanf("%d",&j);
^
sump.c:918:18: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result]
scanf("%d",&j);
^
sump.c:939:18: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result]
scanf("%d",&j);
^
sump.c:949:22: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result]
scanf("%d",&stepBurnin);
^
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o sumt.o sumt.c
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o tree.o tree.c
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o utils.o utils.c
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o mbbeagle.o mbbeagle.c
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o best.o best.c
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -o mb mb.o bayes.o command.o mbmath.o mcmc.o model.o plot.o sump.o sumt.o tree.o utils.o mbbeagle.o best.o -Wl,-z,relro -L/usr/lib -lhmsbeagle -lreadline -lm
make[2]: Leaving directory `/«BUILDDIR»/mrbayes-3.2.2+dfsg/src'
mv src/mb .
make[1]: Leaving directory `/«BUILDDIR»/mrbayes-3.2.2+dfsg'
dh_auto_test -a -O--sourcedirectory=src
fakeroot debian/rules binary-arch
dh binary-arch --sourcedirectory=src
dh_testroot -a -O--sourcedirectory=src
dh_prep -a -O--sourcedirectory=src
debian/rules override_dh_auto_install
make[1]: Entering directory `/«BUILDDIR»/mrbayes-3.2.2+dfsg'
echo "Do not try to install to /usr/local/bin"
Do not try to install to /usr/local/bin
make[1]: Leaving directory `/«BUILDDIR»/mrbayes-3.2.2+dfsg'
dh_install -a -O--sourcedirectory=src
dh_installdocs -a -O--sourcedirectory=src
dh_installchangelogs -a -O--sourcedirectory=src
dh_installman -a -O--sourcedirectory=src
dh_perl -a -O--sourcedirectory=src
dh_link -a -O--sourcedirectory=src
debian/rules override_dh_compress
make[1]: Entering directory `/«BUILDDIR»/mrbayes-3.2.2+dfsg'
dh_compress --exclude=.pdf
make[1]: Leaving directory `/«BUILDDIR»/mrbayes-3.2.2+dfsg'
dh_fixperms -a -O--sourcedirectory=src
debian/rules override_dh_strip
make[1]: Entering directory `/«BUILDDIR»/mrbayes-3.2.2+dfsg'
dh_strip --dbg-package=mrbayes-dbg
make[1]: Leaving directory `/«BUILDDIR»/mrbayes-3.2.2+dfsg'
dh_makeshlibs -a -O--sourcedirectory=src
dh_shlibdeps -a -O--sourcedirectory=src
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrbayes-mpi/usr/lib/mrbayes-mpi/mb-mpi was not linked against libhwloc.so.5 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrbayes-mpi/usr/lib/mrbayes-mpi/mb-mpi was not linked against libdl.so.2 (it uses none of the library's symbols)
dh_installdeb -a -O--sourcedirectory=src
dh_gencontrol -a -O--sourcedirectory=src
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dh_md5sums -a -O--sourcedirectory=src
debian/rules override_dh_builddeb
make[1]: Entering directory `/«BUILDDIR»/mrbayes-3.2.2+dfsg'
dh_builddeb -- -Z xz
dpkg-deb: building package `mrbayes' in `../mrbayes_3.2.2+dfsg-1_armhf.deb'.
dpkg-deb: building package `mrbayes-mpi' in `../mrbayes-mpi_3.2.2+dfsg-1_armhf.deb'.
dpkg-deb: building package `mrbayes-dbg' in `../mrbayes-dbg_3.2.2+dfsg-1_armhf.deb'.
make[1]: Leaving directory `/«BUILDDIR»/mrbayes-3.2.2+dfsg'
dpkg-genchanges -B -mRaspbian nitrogen6x test autobuilder <root@raspbian.org> >../mrbayes_3.2.2+dfsg-1_armhf.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
dpkg-source --after-build mrbayes-3.2.2+dfsg
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
Build finished at 20140120-0537
Finished
────────
I: Built successfully
┌──────────────────────────────────────────────────────────────────────────────┐
│ Changes │
└──────────────────────────────────────────────────────────────────────────────┘
mrbayes_3.2.2+dfsg-1_armhf.changes:
───────────────────────────────────
Format: 1.8
Date: Mon, 13 Jan 2014 14:38:47 +0100
Source: mrbayes
Binary: mrbayes mrbayes-mpi mrbayes-dbg mrbayes-doc
Architecture: armhf
Version: 3.2.2+dfsg-1
Distribution: jessie-staging
Urgency: medium
Maintainer: Raspbian nitrogen6x test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
mrbayes - Bayesian Inference of Phylogeny
mrbayes-dbg - Bayesian Inference of Phylogeny - debug symbols
mrbayes-doc - Bayesian Inference of Phylogeny - manual
mrbayes-mpi - Bayesian Inference of Phylogeny - mpi version
Changes:
mrbayes (3.2.2+dfsg-1) unstable; urgency=medium
.
* New upstream version
* debian/control:
- cme fix dpkg-control
Remark: Pre-Depends: dpkg (>= 1.15.6~) can definitely be dropped
since even oldstable has a later dpkg. Most probably a very old
lintian was used in the check for the previous version
- Canoncial Vcs fields
- mrbayes-dbg: s/Conflicts/Breaks/
- Build-Depends: libhmsbeagle-dev (<< 2.1-1) | libhmsbeagle-dev (>= 2.1-2)
since libhmsbeagle-dev (= 2.1-1) is lacking the unversioned header dir
* debian/patches/ldlibs.patch: Make sure we are properly linking against
all libs
* debian/rules: deactivate dh_auto_install since it tries to move files
to /usr/local/bin
* debian/README.source: removed since redundant
Checksums-Sha1:
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13a79884eaf46401beed5c9baa40e8b03a9944fb 485870 mrbayes-mpi_3.2.2+dfsg-1_armhf.deb
2df8d40991693254ee74c9b6b425f631290cb94b 1550952 mrbayes-dbg_3.2.2+dfsg-1_armhf.deb
Checksums-Sha256:
b65586b7f81835a7351b0966b44e0f12c611ee06e9b5aed7d449f7256e66150f 475514 mrbayes_3.2.2+dfsg-1_armhf.deb
6db2b951d65db4ee3b6511b28f525d68383f19feacd5caa3c1aa6b9785c54f5b 485870 mrbayes-mpi_3.2.2+dfsg-1_armhf.deb
08a8600e7a92cf5bc8b0acc1a1578a7306b0f173ceafcff0fa802d153aa446c6 1550952 mrbayes-dbg_3.2.2+dfsg-1_armhf.deb
Files:
9282dd8b5b5b22ddd5eb8add77e4bd04 475514 science optional mrbayes_3.2.2+dfsg-1_armhf.deb
ae192d41c85e6256bfd4f0e8844883a7 485870 science optional mrbayes-mpi_3.2.2+dfsg-1_armhf.deb
d0820cb3f7db150a9b631f686bc73be5 1550952 debug extra mrbayes-dbg_3.2.2+dfsg-1_armhf.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
mrbayes_3.2.2+dfsg-1_armhf.deb
──────────────────────────────
new debian package, version 2.0.
size 475514 bytes: control archive=841 bytes.
842 bytes, 18 lines control
318 bytes, 5 lines md5sums
Package: mrbayes
Version: 3.2.2+dfsg-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1354
Depends: libc6 (>= 2.7), libhmsbeagle1, libreadline6 (>= 6.0)
Suggests: mrbayes-doc
Section: science
Priority: optional
Homepage: http://mrbayes.csit.fsu.edu/
Description: Bayesian Inference of Phylogeny
Bayesian inference of phylogeny is based upon a quantity called the posterior
probability distribution of trees, which is the probability of a tree
conditioned on the observations. The conditioning is accomplished using
Bayes's theorem. The posterior probability distribution of trees is
impossible to calculate analytically; instead, MrBayes uses a simulation
technique called Markov chain Monte Carlo (or MCMC) to approximate the
posterior probabilities of trees.
drwxr-xr-x root/root 0 2014-01-20 05:37 ./
drwxr-xr-x root/root 0 2014-01-20 05:37 ./usr/
drwxr-xr-x root/root 0 2014-01-20 05:37 ./usr/bin/
-rwxr-xr-x root/root 1382636 2014-01-20 05:37 ./usr/bin/mb
drwxr-xr-x root/root 0 2014-01-20 05:37 ./usr/share/
drwxr-xr-x root/root 0 2014-01-20 05:37 ./usr/share/doc/
drwxr-xr-x root/root 0 2014-01-20 05:37 ./usr/share/doc/mrbayes/
-rw-r--r-- root/root 311 2013-09-12 08:57 ./usr/share/doc/mrbayes/README.Debian
-rw-r--r-- root/root 1482 2013-09-12 08:57 ./usr/share/doc/mrbayes/copyright
-rw-r--r-- root/root 1667 2014-01-14 08:19 ./usr/share/doc/mrbayes/changelog.Debian.gz
drwxr-xr-x root/root 0 2014-01-20 05:37 ./usr/share/man/
drwxr-xr-x root/root 0 2014-01-20 05:37 ./usr/share/man/man1/
-rw-r--r-- root/root 206 2014-01-20 05:37 ./usr/share/man/man1/mb.1.gz
mrbayes-mpi_3.2.2+dfsg-1_armhf.deb
──────────────────────────────────
new debian package, version 2.0.
size 485870 bytes: control archive=965 bytes.
1009 bytes, 21 lines control
399 bytes, 6 lines md5sums
Package: mrbayes-mpi
Source: mrbayes
Version: 3.2.2+dfsg-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1379
Depends: libc6 (>= 2.7), libhmsbeagle1, libhwloc5, libopenmpi1.6, libreadline6 (>= 6.0), mpi-default-bin
Suggests: mpi-default, mrbayes-doc
Section: science
Priority: optional
Homepage: http://mrbayes.csit.fsu.edu/
Description: Bayesian Inference of Phylogeny - mpi version
Bayesian inference of phylogeny is based upon a quantity called the posterior
probability distribution of trees, which is the probability of a tree
conditioned on the observations. The conditioning is accomplished using
Bayes's theorem. The posterior probability distribution of trees is
impossible to calculate analytically; instead, MrBayes uses a simulation
technique called Markov chain Monte Carlo (or MCMC) to approximate the
posterior probabilities of trees.
.
This package offers a binary compiled for parallel computation with MPI.
drwxr-xr-x root/root 0 2014-01-20 05:37 ./
drwxr-xr-x root/root 0 2014-01-20 05:37 ./usr/
drwxr-xr-x root/root 0 2014-01-20 05:37 ./usr/lib/
drwxr-xr-x root/root 0 2014-01-20 05:37 ./usr/lib/mrbayes-mpi/
-rwxr-xr-x root/root 1407260 2014-01-20 05:37 ./usr/lib/mrbayes-mpi/mb-mpi
drwxr-xr-x root/root 0 2014-01-20 05:37 ./usr/bin/
-rwxr-xr-x root/root 162 2013-09-12 08:57 ./usr/bin/mb-mpi
drwxr-xr-x root/root 0 2014-01-20 05:37 ./usr/share/
drwxr-xr-x root/root 0 2014-01-20 05:37 ./usr/share/doc/
drwxr-xr-x root/root 0 2014-01-20 05:37 ./usr/share/doc/mrbayes-mpi/
-rw-r--r-- root/root 348 2013-09-12 08:57 ./usr/share/doc/mrbayes-mpi/README.Debian
-rw-r--r-- root/root 1482 2013-09-12 08:57 ./usr/share/doc/mrbayes-mpi/copyright
-rw-r--r-- root/root 1667 2014-01-14 08:19 ./usr/share/doc/mrbayes-mpi/changelog.Debian.gz
drwxr-xr-x root/root 0 2014-01-20 05:37 ./usr/share/man/
drwxr-xr-x root/root 0 2014-01-20 05:37 ./usr/share/man/man1/
-rw-r--r-- root/root 226 2014-01-20 05:37 ./usr/share/man/man1/mb-mpi.1.gz
mrbayes-dbg_3.2.2+dfsg-1_armhf.deb
──────────────────────────────────
new debian package, version 2.0.
size 1550952 bytes: control archive=984 bytes.
1190 bytes, 23 lines control
362 bytes, 4 lines md5sums
Package: mrbayes-dbg
Source: mrbayes
Version: 3.2.2+dfsg-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1654
Depends: mrbayes (= 3.2.2+dfsg-1) | mrbayes-mpi (= 3.2.2+dfsg-1)
Breaks: mrbayes (>> 3.2.2+dfsg-1), mrbayes (<< 3.2.2+dfsg-1), mrbayes-mpi (>> 3.2.2+dfsg-1), mrbayes-mpi (<< 3.2.2+dfsg-1)
Section: debug
Priority: extra
Homepage: http://mrbayes.csit.fsu.edu/
Description: Bayesian Inference of Phylogeny - debug symbols
Bayesian inference of phylogeny is based upon a quantity called the posterior
probability distribution of trees, which is the probability of a tree
conditioned on the observations. The conditioning is accomplished using
Bayes's theorem. The posterior probability distribution of trees is
impossible to calculate analytically; instead, MrBayes uses a simulation
technique called Markov chain Monte Carlo (or MCMC) to approximate the
posterior probabilities of trees.
.
The package provides the debug symbols that are otherwise stripped from
the binaries to reduce the footprint of the package. This package can be
installed to help debugging of problems when running mrbayes.
drwxr-xr-x root/root 0 2014-01-20 05:37 ./
drwxr-xr-x root/root 0 2014-01-20 05:37 ./usr/
drwxr-xr-x root/root 0 2014-01-20 05:37 ./usr/share/
drwxr-xr-x root/root 0 2014-01-20 05:37 ./usr/share/doc/
drwxr-xr-x root/root 0 2014-01-20 05:37 ./usr/share/doc/mrbayes-dbg/
-rw-r--r-- root/root 1482 2013-09-12 08:57 ./usr/share/doc/mrbayes-dbg/copyright
-rw-r--r-- root/root 1667 2014-01-14 08:19 ./usr/share/doc/mrbayes-dbg/changelog.Debian.gz
drwxr-xr-x root/root 0 2014-01-20 05:37 ./usr/lib/
drwxr-xr-x root/root 0 2014-01-20 05:37 ./usr/lib/debug/
drwxr-xr-x root/root 0 2014-01-20 05:37 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2014-01-20 05:37 ./usr/lib/debug/.build-id/7c/
-rw-r--r-- root/root 838372 2014-01-20 05:37 ./usr/lib/debug/.build-id/7c/1bcc9fe95b9eecb35457093856beaf40b80b60.debug
drwxr-xr-x root/root 0 2014-01-20 05:37 ./usr/lib/debug/.build-id/a7/
-rw-r--r-- root/root 851132 2014-01-20 05:37 ./usr/lib/debug/.build-id/a7/b4931ab67ebc0b3dbc81475588e9c0a5eca283.debug
┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
┌──────────────────────────────────────────────────────────────────────────────┐
│ Cleanup │
└──────────────────────────────────────────────────────────────────────────────┘
Purging /«BUILDDIR»
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary │
└──────────────────────────────────────────────────────────────────────────────┘
Build Architecture: armhf
Build-Space: 26928
Build-Time: 986
Distribution: jessie-staging
Host Architecture: armhf
Install-Time: 327
Job: mrbayes_3.2.2+dfsg-1
Machine Architecture: armhf
Package: mrbayes
Package-Time: 1388
Source-Version: 3.2.2+dfsg-1
Space: 26928
Status: successful
Version: 3.2.2+dfsg-1
────────────────────────────────────────────────────────────────────────────────
Finished at 20140120-0537
Build needed 00:23:08, 26928k disc space