mrbayes →
3.2.1+dfsg-2 →
armhf → 2013-05-25 04:26:53
sbuild (Debian sbuild) 0.63.2 (18 Aug 2012) on debian-armhf
╔══════════════════════════════════════════════════════════════════════════════╗
║ mrbayes 3.2.1+dfsg-2 (armhf) 25 May 2013 04:07 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: mrbayes
Version: 3.2.1+dfsg-2
Source Version: 3.2.1+dfsg-2
Distribution: jessie-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'build/mrbayes-vakeAL/mrbayes-3.2.1+dfsg' with '«PKGBUILDDIR»'
I: NOTICE: Log filtering will replace 'build/mrbayes-vakeAL' with '«BUILDDIR»'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/jessie-staging-armhf-sbuild-8f757a46-1e83-4095-9952-ab98254231e2' with '«CHROOT»'
┌──────────────────────────────────────────────────────────────────────────────┐
│ Update chroot │
└──────────────────────────────────────────────────────────────────────────────┘
Get:1 http://172.17.0.1 jessie-staging Release.gpg [490 B]
Get:2 http://172.17.0.1 jessie-staging Release [10.8 kB]
Get:3 http://172.17.0.1 jessie-staging/main Sources [6553 kB]
Get:4 http://172.17.0.1 jessie-staging/main armhf Packages [7529 kB]
Ign http://172.17.0.1 jessie-staging/main Translation-en
Fetched 14.1 MB in 41s (336 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Fetch source files │
└──────────────────────────────────────────────────────────────────────────────┘
Check APT
─────────
Checking available source versions...
Download source files with APT
──────────────────────────────
Reading package lists...
Building dependency tree...
Reading state information...
NOTICE: 'mrbayes' packaging is maintained in the 'Svn' version control system at:
svn://svn.debian.org/debian-med/trunk/packages/mrbayes/trunk/
Need to get 3237 kB of source archives.
Get:1 http://172.17.0.1/private/ jessie-staging/main mrbayes 3.2.1+dfsg-2 (dsc) [1744 B]
Get:2 http://172.17.0.1/private/ jessie-staging/main mrbayes 3.2.1+dfsg-2 (tar) [3229 kB]
Get:3 http://172.17.0.1/private/ jessie-staging/main mrbayes 3.2.1+dfsg-2 (diff) [6074 B]
Fetched 3237 kB in 4s (792 kB/s)
Download complete and in download only mode
Check arch
──────────
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-YQT1SJ/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install core build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 0 B/706 B of archives.
After this operation, 0 B of additional disk space will be used.
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 11288 files and directories currently installed.)
Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
Merged Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), libreadline-dev, mpi-default-dev, libhmsbeagle-dev, autoconf (>= 2.65), automake (>= 1:1.11)
Filtered Build-Depends: libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), libreadline-dev, mpi-default-dev, libhmsbeagle-dev, autoconf (>= 2.65), automake (>= 1:1.11)
dpkg-deb: building package `sbuild-build-depends-mrbayes-dummy' in `/«BUILDDIR»/resolver-JTsmDQ/apt_archive/sbuild-build-depends-mrbayes-dummy.deb'.
OK
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install mrbayes build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
adduser autoconf automake autotools-dev bsdmainutils debhelper file gettext
gettext-base groff-base html2text intltool-debian libasprintf0c2 libcroco3
libffi5 libgettextpo0 libgfortran3 libglib2.0-0 libhmsbeagle-dev
libhmsbeagle1 libibverbs-dev libibverbs1 libmagic1 libopenmpi-dev
libopenmpi1.3 libpcre3 libpipeline1 libreadline-dev libreadline6-dev
libtinfo-dev libtorque2 libunistring0 libxml2 m4 man-db mpi-default-dev
openmpi-common po-debconf
Suggested packages:
autoconf2.13 autoconf-archive gnu-standards autoconf-doc libtool wamerican
wordlist whois vacation dh-make gettext-doc groff less www-browser
libmail-box-perl
Recommended packages:
curl wget lynx-cur autopoint libglib2.0-data shared-mime-info xml-core
libmail-sendmail-perl
The following NEW packages will be installed:
adduser autoconf automake autotools-dev bsdmainutils debhelper file gettext
gettext-base groff-base html2text intltool-debian libasprintf0c2 libcroco3
libffi5 libgettextpo0 libgfortran3 libglib2.0-0 libhmsbeagle-dev
libhmsbeagle1 libibverbs-dev libibverbs1 libmagic1 libopenmpi-dev
libopenmpi1.3 libpcre3 libpipeline1 libreadline-dev libreadline6-dev
libtinfo-dev libtorque2 libunistring0 libxml2 m4 man-db mpi-default-dev
openmpi-common po-debconf sbuild-build-depends-mrbayes-dummy
0 upgraded, 39 newly installed, 0 to remove and 0 not upgraded.
Need to get 15.9 MB/15.9 MB of archives.
After this operation, 48.9 MB of additional disk space will be used.
Get:1 http://172.17.0.1/private/ jessie-staging/main libpcre3 armhf 1:8.30-5 [242 kB]
Get:2 http://172.17.0.1/private/ jessie-staging/main libpipeline1 armhf 1.2.1-1 [35.0 kB]
Get:3 http://172.17.0.1/private/ jessie-staging/main libasprintf0c2 armhf 0.18.1.1-9 [26.4 kB]
Get:4 http://172.17.0.1/private/ jessie-staging/main libmagic1 armhf 5.11-2 [199 kB]
Get:5 http://172.17.0.1/private/ jessie-staging/main libxml2 armhf 2.8.0+dfsg1-7+nmu1 [822 kB]
Get:6 http://172.17.0.1/private/ jessie-staging/main libffi5 armhf 3.0.10-3+b3 [22.9 kB]
Get:7 http://172.17.0.1/private/ jessie-staging/main libglib2.0-0 armhf 2.33.12+really2.32.4-5 [1689 kB]
Get:8 http://172.17.0.1/private/ jessie-staging/main libcroco3 armhf 0.6.6-2 [119 kB]
Get:9 http://172.17.0.1/private/ jessie-staging/main libunistring0 armhf 0.9.3-5 [408 kB]
Get:10 http://172.17.0.1/private/ jessie-staging/main libgettextpo0 armhf 0.18.1.1-9 [130 kB]
Get:11 http://172.17.0.1/private/ jessie-staging/main libgfortran3 armhf 4.7.2-5+rpi1 [237 kB]
Get:12 http://172.17.0.1/private/ jessie-staging/main adduser all 3.113+nmu3 [264 kB]
Get:13 http://172.17.0.1/private/ jessie-staging/main bsdmainutils armhf 9.0.3 [207 kB]
Get:14 http://172.17.0.1/private/ jessie-staging/main groff-base armhf 1.21-9 [1071 kB]
Get:15 http://172.17.0.1/private/ jessie-staging/main man-db armhf 2.6.2-1 [1027 kB]
Get:16 http://172.17.0.1/private/ jessie-staging/main file armhf 5.11-2 [51.4 kB]
Get:17 http://172.17.0.1/private/ jessie-staging/main gettext-base armhf 0.18.1.1-9 [138 kB]
Get:18 http://172.17.0.1/private/ jessie-staging/main m4 armhf 1.4.16-3 [246 kB]
Get:19 http://172.17.0.1/private/ jessie-staging/main autoconf all 2.69-1 [589 kB]
Get:20 http://172.17.0.1/private/ jessie-staging/main autotools-dev all 20120608.1 [73.0 kB]
Get:21 http://172.17.0.1/private/ jessie-staging/main automake all 1:1.11.6-1 [607 kB]
Get:22 http://172.17.0.1/private/ jessie-staging/main html2text armhf 1.3.2a-15 [98.5 kB]
Get:23 http://172.17.0.1/private/ jessie-staging/main gettext armhf 0.18.1.1-9 [1879 kB]
Get:24 http://172.17.0.1/private/ jessie-staging/main intltool-debian all 0.35.0+20060710.1 [29.8 kB]
Get:25 http://172.17.0.1/private/ jessie-staging/main po-debconf all 1.0.16+nmu2 [223 kB]
Get:26 http://172.17.0.1/private/ jessie-staging/main debhelper all 9.20120909 [705 kB]
Get:27 http://172.17.0.1/private/ jessie-staging/main libtinfo-dev armhf 5.9-10 [89.6 kB]
Get:28 http://172.17.0.1/private/ jessie-staging/main libreadline6-dev armhf 6.2+dfsg-0.1 [164 kB]
Get:29 http://172.17.0.1/private/ jessie-staging/main libreadline-dev armhf 6.2+dfsg-0.1 [898 B]
Get:30 http://172.17.0.1/private/ jessie-staging/main libtorque2 armhf 2.4.16+dfsg-1 [109 kB]
Get:31 http://172.17.0.1/private/ jessie-staging/main libhmsbeagle1 armhf 1.0-6 [64.0 kB]
Get:32 http://172.17.0.1/private/ jessie-staging/main libhmsbeagle-dev armhf 1.0-6 [535 kB]
Get:33 http://172.17.0.1/private/ jessie-staging/main libibverbs1 armhf 1.1.6-1 [30.9 kB]
Get:34 http://172.17.0.1/private/ jessie-staging/main libibverbs-dev armhf 1.1.6-1 [81.4 kB]
Get:35 http://172.17.0.1/private/ jessie-staging/main libopenmpi1.3 armhf 1.4.5-1 [1206 kB]
Get:36 http://172.17.0.1/private/ jessie-staging/main openmpi-common all 1.4.5-1 [101 kB]
Get:37 http://172.17.0.1/private/ jessie-staging/main libopenmpi-dev armhf 1.4.5-1 [2363 kB]
Get:38 http://172.17.0.1/private/ jessie-staging/main mpi-default-dev armhf 1.0.1 [3610 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 15.9 MB in 17s (933 kB/s)
Selecting previously unselected package libpcre3:armhf.
(Reading database ... 11288 files and directories currently installed.)
Unpacking libpcre3:armhf (from .../libpcre3_1%3a8.30-5_armhf.deb) ...
Selecting previously unselected package libpipeline1:armhf.
Unpacking libpipeline1:armhf (from .../libpipeline1_1.2.1-1_armhf.deb) ...
Selecting previously unselected package libasprintf0c2:armhf.
Unpacking libasprintf0c2:armhf (from .../libasprintf0c2_0.18.1.1-9_armhf.deb) ...
Selecting previously unselected package libmagic1:armhf.
Unpacking libmagic1:armhf (from .../libmagic1_5.11-2_armhf.deb) ...
Selecting previously unselected package libxml2:armhf.
Unpacking libxml2:armhf (from .../libxml2_2.8.0+dfsg1-7+nmu1_armhf.deb) ...
Selecting previously unselected package libffi5:armhf.
Unpacking libffi5:armhf (from .../libffi5_3.0.10-3+b3_armhf.deb) ...
Selecting previously unselected package libglib2.0-0:armhf.
Unpacking libglib2.0-0:armhf (from .../libglib2.0-0_2.33.12+really2.32.4-5_armhf.deb) ...
Selecting previously unselected package libcroco3:armhf.
Unpacking libcroco3:armhf (from .../libcroco3_0.6.6-2_armhf.deb) ...
Selecting previously unselected package libunistring0:armhf.
Unpacking libunistring0:armhf (from .../libunistring0_0.9.3-5_armhf.deb) ...
Selecting previously unselected package libgettextpo0:armhf.
Unpacking libgettextpo0:armhf (from .../libgettextpo0_0.18.1.1-9_armhf.deb) ...
Selecting previously unselected package libgfortran3:armhf.
Unpacking libgfortran3:armhf (from .../libgfortran3_4.7.2-5+rpi1_armhf.deb) ...
Selecting previously unselected package adduser.
Unpacking adduser (from .../adduser_3.113+nmu3_all.deb) ...
Selecting previously unselected package bsdmainutils.
Unpacking bsdmainutils (from .../bsdmainutils_9.0.3_armhf.deb) ...
Selecting previously unselected package groff-base.
Unpacking groff-base (from .../groff-base_1.21-9_armhf.deb) ...
Selecting previously unselected package man-db.
Unpacking man-db (from .../man-db_2.6.2-1_armhf.deb) ...
Selecting previously unselected package file.
Unpacking file (from .../archives/file_5.11-2_armhf.deb) ...
Selecting previously unselected package gettext-base.
Unpacking gettext-base (from .../gettext-base_0.18.1.1-9_armhf.deb) ...
Selecting previously unselected package m4.
Unpacking m4 (from .../archives/m4_1.4.16-3_armhf.deb) ...
Selecting previously unselected package autoconf.
Unpacking autoconf (from .../autoconf_2.69-1_all.deb) ...
Selecting previously unselected package autotools-dev.
Unpacking autotools-dev (from .../autotools-dev_20120608.1_all.deb) ...
Selecting previously unselected package automake.
Unpacking automake (from .../automake_1%3a1.11.6-1_all.deb) ...
Selecting previously unselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_armhf.deb) ...
Selecting previously unselected package gettext.
Unpacking gettext (from .../gettext_0.18.1.1-9_armhf.deb) ...
Selecting previously unselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
Selecting previously unselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
Selecting previously unselected package debhelper.
Unpacking debhelper (from .../debhelper_9.20120909_all.deb) ...
Selecting previously unselected package libtinfo-dev:armhf.
Unpacking libtinfo-dev:armhf (from .../libtinfo-dev_5.9-10_armhf.deb) ...
Selecting previously unselected package libreadline6-dev:armhf.
Unpacking libreadline6-dev:armhf (from .../libreadline6-dev_6.2+dfsg-0.1_armhf.deb) ...
Selecting previously unselected package libreadline-dev:armhf.
Unpacking libreadline-dev:armhf (from .../libreadline-dev_6.2+dfsg-0.1_armhf.deb) ...
Selecting previously unselected package libtorque2.
Unpacking libtorque2 (from .../libtorque2_2.4.16+dfsg-1_armhf.deb) ...
Selecting previously unselected package libhmsbeagle1.
Unpacking libhmsbeagle1 (from .../libhmsbeagle1_1.0-6_armhf.deb) ...
Selecting previously unselected package libhmsbeagle-dev.
Unpacking libhmsbeagle-dev (from .../libhmsbeagle-dev_1.0-6_armhf.deb) ...
Selecting previously unselected package libibverbs1.
Unpacking libibverbs1 (from .../libibverbs1_1.1.6-1_armhf.deb) ...
Selecting previously unselected package libibverbs-dev.
Unpacking libibverbs-dev (from .../libibverbs-dev_1.1.6-1_armhf.deb) ...
Selecting previously unselected package libopenmpi1.3.
Unpacking libopenmpi1.3 (from .../libopenmpi1.3_1.4.5-1_armhf.deb) ...
Selecting previously unselected package openmpi-common.
Unpacking openmpi-common (from .../openmpi-common_1.4.5-1_all.deb) ...
Selecting previously unselected package libopenmpi-dev.
Unpacking libopenmpi-dev (from .../libopenmpi-dev_1.4.5-1_armhf.deb) ...
Selecting previously unselected package mpi-default-dev.
Unpacking mpi-default-dev (from .../mpi-default-dev_1.0.1_armhf.deb) ...
Selecting previously unselected package sbuild-build-depends-mrbayes-dummy.
Unpacking sbuild-build-depends-mrbayes-dummy (from .../sbuild-build-depends-mrbayes-dummy.deb) ...
Setting up libpcre3:armhf (1:8.30-5) ...
Setting up libpipeline1:armhf (1.2.1-1) ...
Setting up libasprintf0c2:armhf (0.18.1.1-9) ...
Setting up libmagic1:armhf (5.11-2) ...
Setting up libxml2:armhf (2.8.0+dfsg1-7+nmu1) ...
Setting up libffi5:armhf (3.0.10-3+b3) ...
Setting up libglib2.0-0:armhf (2.33.12+really2.32.4-5) ...
No schema files found: doing nothing.
Setting up libcroco3:armhf (0.6.6-2) ...
Setting up libunistring0:armhf (0.9.3-5) ...
Setting up libgettextpo0:armhf (0.18.1.1-9) ...
Setting up libgfortran3:armhf (4.7.2-5+rpi1) ...
Setting up adduser (3.113+nmu3) ...
Setting up bsdmainutils (9.0.3) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up groff-base (1.21-9) ...
Setting up man-db (2.6.2-1) ...
Building database of manual pages ...
Setting up file (5.11-2) ...
Setting up gettext-base (0.18.1.1-9) ...
Setting up m4 (1.4.16-3) ...
Setting up autoconf (2.69-1) ...
Setting up autotools-dev (20120608.1) ...
Setting up automake (1:1.11.6-1) ...
update-alternatives: using /usr/bin/automake-1.11 to provide /usr/bin/automake (automake) in auto mode
Setting up html2text (1.3.2a-15) ...
Setting up gettext (0.18.1.1-9) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu2) ...
Setting up debhelper (9.20120909) ...
Setting up libtinfo-dev:armhf (5.9-10) ...
Setting up libreadline6-dev:armhf (6.2+dfsg-0.1) ...
Setting up libreadline-dev:armhf (6.2+dfsg-0.1) ...
Setting up libtorque2 (2.4.16+dfsg-1) ...
Setting up libhmsbeagle1 (1.0-6) ...
Setting up libhmsbeagle-dev (1.0-6) ...
Setting up libibverbs1 (1.1.6-1) ...
Setting up libibverbs-dev (1.1.6-1) ...
Setting up libopenmpi1.3 (1.4.5-1) ...
Setting up openmpi-common (1.4.5-1) ...
Setting up libopenmpi-dev (1.4.5-1) ...
update-alternatives: using /usr/lib/openmpi/include to provide /usr/include/mpi (mpi) in auto mode
Setting up mpi-default-dev (1.0.1) ...
Setting up sbuild-build-depends-mrbayes-dummy (0.invalid.0) ...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build environment │
└──────────────────────────────────────────────────────────────────────────────┘
Kernel: Linux 3.9.1-imx4 armhf (armv7l)
Toolchain package versions: binutils_2.22-8 dpkg-dev_1.16.10 g++-4.6_4.6.3-14+rpi1 gcc-4.6_4.6.3-14+rpi1 libc6-dev_2.13-38+rpi2 libstdc++6_4.7.2-5+rpi1 libstdc++6-4.6-dev_4.6.3-14+rpi1 linux-libc-dev_3.2.41-2+rpi1
Package versions: adduser_3.113+nmu3 apt_0.9.7.8+rpi1 autoconf_2.69-1 automake_1:1.11.6-1 autotools-dev_20120608.1 base-files_7.1 base-passwd_3.5.26 bash_4.2+dfsg-0.1 binutils_2.22-8 bsdmainutils_9.0.3 bsdutils_1:2.20.1-5.3 build-essential_11.5+b1 bzip2_1.0.6-4 coreutils_8.13-3.5 cpio_2.11+dfsg-0.1 cpp_4:4.6.3-8 cpp-4.6_4.6.3-14+rpi1 dash_0.5.7-3 debconf_1.5.50 debconf-i18n_1.5.50 debfoster_2.7-1.2 debhelper_9.20120909 debianutils_4.3.2 diffutils_1:3.2-6 dpkg_1.16.10 dpkg-dev_1.16.10 e2fslibs_1.42.5-1.1 e2fsprogs_1.42.5-1.1 fakeroot_1.18.4-2 file_5.11-2 findutils_4.4.2-4 g++_4:4.6.3-8 g++-4.6_4.6.3-14+rpi1 gcc_4:4.6.3-8 gcc-4.5-base_4.5.3-12+rpi1 gcc-4.6_4.6.3-14+rpi1 gcc-4.6-base_4.6.3-14+rpi1 gcc-4.7-base_4.7.2-5+rpi1 gettext_0.18.1.1-9 gettext-base_0.18.1.1-9 gnupg_1.4.12-7 gpgv_1.4.12-7 grep_2.12-2 groff-base_1.21-9 gzip_1.5-1.1 hostname_3.11 html2text_1.3.2a-15 initramfs-tools_0.112 initscripts_2.88dsf-41 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.1 klibc-utils_2.0.1-3.1+rpi1 kmod_9-3 libacl1_2.2.51-8 libapt-pkg4.12_0.9.7.8+rpi1 libasprintf0c2_0.18.1.1-9 libattr1_1:2.4.46-8 libblkid1_2.20.1-5.3 libbz2-1.0_1.0.6-4 libc-bin_2.13-38+rpi2 libc-dev-bin_2.13-38+rpi2 libc6_2.13-38+rpi2 libc6-dev_2.13-38+rpi2 libclass-isa-perl_0.36-5 libcomerr2_1.42.5-1.1 libcroco3_0.6.6-2 libdb5.1_5.1.29-5 libdbus-1-3_1.6.8-1 libdpkg-perl_1.16.10 libffi5_3.0.10-3+b3 libgc1c2_1:7.1-9.1 libgcc1_1:4.7.2-5+rpi1 libgdbm3_1.8.3-11 libgettextpo0_0.18.1.1-9 libgfortran3_4.7.2-5+rpi1 libglib2.0-0_2.33.12+really2.32.4-5 libgmp10_2:5.0.5+dfsg-2 libgomp1_4.7.2-5+rpi1 libhmsbeagle-dev_1.0-6 libhmsbeagle1_1.0-6 libibverbs-dev_1.1.6-1 libibverbs1_1.1.6-1 libklibc_2.0.1-3.1+rpi1 libkmod2_9-3 liblocale-gettext-perl_1.05-7 liblzma5_5.1.1alpha+20120614-2 libmagic1_5.11-2 libmount1_2.20.1-5.3 libmpc2_0.9-4 libmpfr4_3.1.0-5 libncurses5_5.9-10 libncursesw5_5.9-10 libnih-dbus1_1.0.3-4.1 libnih1_1.0.3-4.1 libopenmpi-dev_1.4.5-1 libopenmpi1.3_1.4.5-1 libpam-modules_1.1.3-7.1 libpam-modules-bin_1.1.3-7.1 libpam-runtime_1.1.3-9 libpam0g_1.1.3-7.1 libpcre3_1:8.30-5 libpipeline1_1.2.1-1 libprocps0_1:3.3.3-3 libreadline-dev_6.2+dfsg-0.1 libreadline6_6.2+dfsg-0.1 libreadline6-dev_6.2+dfsg-0.1 libselinux1_2.1.9-5 libsemanage-common_2.1.6-6 libsemanage1_2.1.6-6 libsepol1_2.1.4-3 libslang2_2.2.4-15 libss2_1.42.5-1.1 libstdc++6_4.7.2-5+rpi1 libstdc++6-4.6-dev_4.6.3-14+rpi1 libswitch-perl_2.16-2 libtext-charwidth-perl_0.04-7 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-10 libtinfo5_5.9-10 libtorque2_2.4.16+dfsg-1 libudev0_175-7.2 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-20+nmu1 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5.3 libxml2_2.8.0+dfsg1-7+nmu1 linux-libc-dev_3.2.41-2+rpi1 login_1:4.1.5.1-1 lsb-base_4.1+Debian8+rpi1 m4_1.4.16-3 make_3.81-8.2 makedev_2.3.1-92 man-db_2.6.2-1 mawk_1.3.3-17 mount_2.20.1-5.3 mountall_2.46 mpi-default-dev_1.0.1 multiarch-support_2.13-38+rpi2 ncurses-base_5.9-10 ncurses-bin_5.9-10 openmpi-common_1.4.5-1 passwd_1:4.1.5.1-1 patch_2.6.1-3 perl_5.14.2-21+rpi1 perl-base_5.14.2-21+rpi1 perl-modules_5.14.2-21+rpi1 plymouth_0.8.5.1-5 po-debconf_1.0.16+nmu2 procps_1:3.3.3-3 raspbian-archive-keyring_20120528.2 readline-common_6.2+dfsg-0.1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-mrbayes-dummy_0.invalid.0 sed_4.2.1-10 sensible-utils_0.0.7 sysv-rc_2.88dsf-41 sysvinit_2.88dsf-41 sysvinit-utils_2.88dsf-41 tar_1.26+dfsg-0.1 tzdata_2013b-2 udev_175-7.2 util-linux_2.20.1-5.3 xz-utils_5.1.1alpha+20120614-2 zlib1g_1:1.2.7.dfsg-13
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
└──────────────────────────────────────────────────────────────────────────────┘
Unpack source
─────────────
gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Fri Aug 10 13:51:28 2012 UTC using DSA key ID C09FD35A
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./mrbayes_3.2.1+dfsg-2.dsc
dpkg-source: info: extracting mrbayes in mrbayes-3.2.1+dfsg
dpkg-source: info: unpacking mrbayes_3.2.1+dfsg.orig.tar.gz
dpkg-source: info: unpacking mrbayes_3.2.1+dfsg-2.debian.tar.gz
dpkg-source: info: applying as-needed.patch
Check disc space
────────────────
Sufficient free space for build
User Environment
────────────────
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LANG=en_US.UTF-8
LC_ALL=POSIX
LOGNAME=root
LS_OPTIONS=--color=auto
MAIL=/var/mail/root
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/root
SCHROOT_ALIAS_NAME=jessie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=jessie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=111
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=jessie-staging-armhf-sbuild-8f757a46-1e83-4095-9952-ab98254231e2
SCHROOT_UID=106
SCHROOT_USER=buildd
SHELL=/bin/sh
SHLVL=1
SSH_CLIENT=192.168.1.2 53109 22
SSH_CONNECTION=192.168.1.2 53109 192.168.1.45 22
SSH_TTY=/dev/pts/1
TERM=xterm
USER=root
XDG_SESSION_COOKIE=106ef489ba27ee071ab233f6518d3bce-1369081280.146676-2082782793
_=/etc/init.d/buildd
dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package mrbayes
dpkg-buildpackage: source version 3.2.1+dfsg-2
dpkg-buildpackage: source changed by Andreas Tille <tille@debian.org>
dpkg-source --before-build mrbayes-3.2.1+dfsg
dpkg-buildpackage: host architecture armhf
fakeroot debian/rules clean
dh clean --sourcedirectory=src
dh_testdir -O--sourcedirectory=src
debian/rules override_dh_auto_clean
make[1]: Entering directory `/«BUILDDIR»/mrbayes-3.2.1+dfsg'
( cd src ; /usr/bin/make -f Makefile.in distclean )
make[2]: Entering directory `/«BUILDDIR»/mrbayes-3.2.1+dfsg/src'
rm -f *.o *~ mb
rm -f Makefile config.log config.status config.cache config.h
make[2]: Leaving directory `/«BUILDDIR»/mrbayes-3.2.1+dfsg/src'
rm -f src/configure
rm -f mb mb-mpi src/mb
make[1]: Leaving directory `/«BUILDDIR»/mrbayes-3.2.1+dfsg'
dh_clean -O--sourcedirectory=src
debian/rules build-arch
dh build-arch --sourcedirectory=src
dh_testdir -a -O--sourcedirectory=src
debian/rules override_dh_auto_configure
make[1]: Entering directory `/«BUILDDIR»/mrbayes-3.2.1+dfsg'
#Configure for MPI at first
( cd src ; autoconf )
dh_auto_configure -- --with-beagle=/usr --enable-mpi=yes --enable-debug=yes
configure: WARNING: unrecognized options: --disable-maintainer-mode, --disable-dependency-tracking
configure:
NOTICE: Because the variable $CFLAGS is defined in your shell, the default MrBayes flags will be overridden.
To ensure optimal performance, please check that your $CFLAGS variable is set correctly. Alternatively, unset the
$CFLAGS variable in your shell in order to use the default MrBayes compiler options.
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for exp in -lm... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking for mpicc... yes
checking for SSE support... no
checking for /usr/include/libhmsbeagle-1... yes
checking for /usr/lib... yes
checking for readline in -lreadline... yes
checking for rl_completion_matches function... yes
checking for 32 or 64 bits cpu... 32
configure: creating ./config.status
config.status: creating Makefile
config.status: creating config.h
configure: WARNING: unrecognized options: --disable-maintainer-mode, --disable-dependency-tracking
make[1]: Leaving directory `/«BUILDDIR»/mrbayes-3.2.1+dfsg'
debian/rules override_dh_auto_build
make[1]: Entering directory `/«BUILDDIR»/mrbayes-3.2.1+dfsg'
# build mb-mpi (from initial config)
LIBS="-Wl,--as-needed" dh_auto_build
make[2]: Entering directory `/«BUILDDIR»/mrbayes-3.2.1+dfsg/src'
mpicc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o bayes.o bayes.c
mpicc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o command.o command.c
mpicc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o mbmath.o mbmath.c
mpicc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o mcmc.o mcmc.c
mpicc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o model.o model.c
mpicc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o plot.o plot.c
mpicc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o sump.o sump.c
mpicc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o sumt.o sumt.c
mpicc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o tree.o tree.c
mpicc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o utils.o utils.c
mpicc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o mbbeagle.o mbbeagle.c
mpicc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o best.o best.c
mpicc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -Wl,-z,relro mb.c bayes.o command.o mbmath.o mcmc.o model.o plot.o sump.o sumt.o tree.o utils.o mbbeagle.o best.o -Wl,-z,relro -L/usr/lib -lhmsbeagle -lreadline -lm -o mb
make[2]: Leaving directory `/«BUILDDIR»/mrbayes-3.2.1+dfsg/src'
mv src/mb ./mb-mpi
# Now - build mb
( cd src ; make clean )
make[2]: Entering directory `/«BUILDDIR»/mrbayes-3.2.1+dfsg/src'
rm -f *.o *~ mb
make[2]: Leaving directory `/«BUILDDIR»/mrbayes-3.2.1+dfsg/src'
dh_auto_configure -- --with-beagle=/usr --enable-mpi=no --enable-debug=yes
configure: WARNING: unrecognized options: --disable-maintainer-mode, --disable-dependency-tracking
configure:
NOTICE: Because the variable $CFLAGS is defined in your shell, the default MrBayes flags will be overridden.
To ensure optimal performance, please check that your $CFLAGS variable is set correctly. Alternatively, unset the
$CFLAGS variable in your shell in order to use the default MrBayes compiler options.
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for exp in -lm... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking for SSE support... no
checking for /usr/include/libhmsbeagle-1... yes
checking for /usr/lib... yes
checking for readline in -lreadline... yes
checking for rl_completion_matches function... yes
checking for 32 or 64 bits cpu... 32
configure: creating ./config.status
config.status: creating Makefile
config.status: creating config.h
configure: WARNING: unrecognized options: --disable-maintainer-mode, --disable-dependency-tracking
LIBS="-Wl,--as-needed" dh_auto_build
make[2]: Entering directory `/«BUILDDIR»/mrbayes-3.2.1+dfsg/src'
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o bayes.o bayes.c
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o command.o command.c
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o mbmath.o mbmath.c
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o mcmc.o mcmc.c
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o model.o model.c
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o plot.o plot.c
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o sump.o sump.c
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o sumt.o sumt.c
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o tree.o tree.c
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o utils.o utils.c
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o mbbeagle.o mbbeagle.c
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o best.o best.c
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -Wl,-z,relro mb.c bayes.o command.o mbmath.o mcmc.o model.o plot.o sump.o sumt.o tree.o utils.o mbbeagle.o best.o -Wl,-z,relro -L/usr/lib -lhmsbeagle -lreadline -lm -o mb
make[2]: Leaving directory `/«BUILDDIR»/mrbayes-3.2.1+dfsg/src'
mv src/mb .
make[1]: Leaving directory `/«BUILDDIR»/mrbayes-3.2.1+dfsg'
dh_auto_test -a -O--sourcedirectory=src
fakeroot debian/rules binary-arch
dh binary-arch --sourcedirectory=src
dh_testroot -a -O--sourcedirectory=src
dh_prep -a -O--sourcedirectory=src
dh_installdirs -a -O--sourcedirectory=src
dh_auto_install -a -O--sourcedirectory=src
dh_install -a -O--sourcedirectory=src
dh_installdocs -a -O--sourcedirectory=src
dh_installchangelogs -a -O--sourcedirectory=src
dh_installexamples -a -O--sourcedirectory=src
dh_installman -a -O--sourcedirectory=src
dh_installcatalogs -a -O--sourcedirectory=src
dh_installcron -a -O--sourcedirectory=src
dh_installdebconf -a -O--sourcedirectory=src
dh_installemacsen -a -O--sourcedirectory=src
dh_installifupdown -a -O--sourcedirectory=src
dh_installinfo -a -O--sourcedirectory=src
dh_installinit -a -O--sourcedirectory=src
dh_installmenu -a -O--sourcedirectory=src
dh_installmime -a -O--sourcedirectory=src
dh_installmodules -a -O--sourcedirectory=src
dh_installlogcheck -a -O--sourcedirectory=src
dh_installlogrotate -a -O--sourcedirectory=src
dh_installpam -a -O--sourcedirectory=src
dh_installppp -a -O--sourcedirectory=src
dh_installudev -a -O--sourcedirectory=src
dh_installwm -a -O--sourcedirectory=src
dh_installxfonts -a -O--sourcedirectory=src
dh_installgsettings -a -O--sourcedirectory=src
dh_bugfiles -a -O--sourcedirectory=src
dh_ucf -a -O--sourcedirectory=src
dh_lintian -a -O--sourcedirectory=src
dh_gconf -a -O--sourcedirectory=src
dh_icons -a -O--sourcedirectory=src
dh_perl -a -O--sourcedirectory=src
dh_usrlocal -a -O--sourcedirectory=src
dh_link -a -O--sourcedirectory=src
debian/rules override_dh_compress
make[1]: Entering directory `/«BUILDDIR»/mrbayes-3.2.1+dfsg'
dh_compress --exclude=.pdf
make[1]: Leaving directory `/«BUILDDIR»/mrbayes-3.2.1+dfsg'
dh_fixperms -a -O--sourcedirectory=src
debian/rules override_dh_strip
make[1]: Entering directory `/«BUILDDIR»/mrbayes-3.2.1+dfsg'
dh_strip --dbg-package=mrbayes-dbg
make[1]: Leaving directory `/«BUILDDIR»/mrbayes-3.2.1+dfsg'
dh_makeshlibs -a -O--sourcedirectory=src
dh_shlibdeps -a -O--sourcedirectory=src
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrbayes-mpi/usr/lib/mrbayes-mpi/mb-mpi was not linked against libdl.so.2 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrbayes-mpi/usr/lib/mrbayes-mpi/mb-mpi was not linked against libopen-pal.so.0 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrbayes-mpi/usr/lib/mrbayes-mpi/mb-mpi was not linked against libutil.so.1 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrbayes-mpi/usr/lib/mrbayes-mpi/mb-mpi was not linked against libnsl.so.1 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrbayes-mpi/usr/lib/mrbayes-mpi/mb-mpi was not linked against libopen-rte.so.0 (it uses none of the library's symbols)
dh_installdeb -a -O--sourcedirectory=src
dh_gencontrol -a -O--sourcedirectory=src
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dh_md5sums -a -O--sourcedirectory=src
debian/rules override_dh_builddeb
make[1]: Entering directory `/«BUILDDIR»/mrbayes-3.2.1+dfsg'
dh_builddeb -- -Z xz
dpkg-deb: building package `mrbayes' in `../mrbayes_3.2.1+dfsg-2_armhf.deb'.
dpkg-deb: building package `mrbayes-mpi' in `../mrbayes-mpi_3.2.1+dfsg-2_armhf.deb'.
dpkg-deb: building package `mrbayes-dbg' in `../mrbayes-dbg_3.2.1+dfsg-2_armhf.deb'.
make[1]: Leaving directory `/«BUILDDIR»/mrbayes-3.2.1+dfsg'
dpkg-genchanges -B >../mrbayes_3.2.1+dfsg-2_armhf.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
dpkg-source --after-build mrbayes-3.2.1+dfsg
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
Build finished at 20130525-0426
Finished
────────
I: Built successfully
┌──────────────────────────────────────────────────────────────────────────────┐
│ Changes │
└──────────────────────────────────────────────────────────────────────────────┘
mrbayes_3.2.1+dfsg-2_armhf.changes:
───────────────────────────────────
Format: 1.8
Date: Fri, 10 Aug 2012 15:37:50 +0200
Source: mrbayes
Binary: mrbayes mrbayes-mpi mrbayes-dbg mrbayes-doc
Architecture: armhf
Version: 3.2.1+dfsg-2
Distribution: jessie-staging
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
mrbayes - Bayesian Inference of Phylogeny
mrbayes-dbg - Bayesian Inference of Phylogeny - debug symbols
mrbayes-doc - Bayesian Inference of Phylogeny - manual
mrbayes-mpi - Bayesian Inference of Phylogeny - mpi version
Closes: 671666 678175
Changes:
mrbayes (3.2.1+dfsg-2) unstable; urgency=low
.
[ Andreas Tille ]
* debian/upstream: Add publication data
* debian/patches/as-needed.patch: Enable building using --as-needed
thanks for the patch to Ilya Barygin <randomaction@ubuntu.com>
Closes: #678175
* debian/control: Dropped quilt from Build-Depends
* debhelper 9 (control+compat)
* debian/rules: use xz compression
.
[ Charles Plessy ]
* debian/control: corrected a typo (Closes: #671666).
Checksums-Sha1:
9701651ddea92c59082a3d9ad3e05cd5ecbcd4ff 463242 mrbayes_3.2.1+dfsg-2_armhf.deb
89180e53b0ddbc9c5f01792ab27799cbf92f9af7 496678 mrbayes-mpi_3.2.1+dfsg-2_armhf.deb
255b1b6d7157ca39d140bbaef1cca497cbc5de81 1162138 mrbayes-dbg_3.2.1+dfsg-2_armhf.deb
Checksums-Sha256:
f0c5d70739f7d2937c230701e22b868b3489b63d5cffa29ea8bc1cfee2b6d4e2 463242 mrbayes_3.2.1+dfsg-2_armhf.deb
b12c3361b1b2bfe5c23bc4f97a90b485cf7ca91cfb381223574e68b73df69791 496678 mrbayes-mpi_3.2.1+dfsg-2_armhf.deb
76c41286d7b77303e5fbf9547d422ae3b43946a8695d46f8aecb6a3f706a39eb 1162138 mrbayes-dbg_3.2.1+dfsg-2_armhf.deb
Files:
c23c5cc0db23ff801f7c6f5b7b38622d 463242 science optional mrbayes_3.2.1+dfsg-2_armhf.deb
ca2e0a8b57f7dc637513d4bd398ec69d 496678 science optional mrbayes-mpi_3.2.1+dfsg-2_armhf.deb
e009369c4ce99cc7482d87ce174b4f1b 1162138 debug extra mrbayes-dbg_3.2.1+dfsg-2_armhf.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
mrbayes_3.2.1+dfsg-2_armhf.deb
──────────────────────────────
new debian package, version 2.0.
size 463242 bytes: control archive=846 bytes.
846 bytes, 18 lines control
318 bytes, 5 lines md5sums
Package: mrbayes
Version: 3.2.1+dfsg-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1330
Depends: libc6 (>= 2.13-28), libhmsbeagle1, libreadline6 (>= 6.0)
Suggests: mrbayes-doc
Section: science
Priority: optional
Homepage: http://mrbayes.csit.fsu.edu/
Description: Bayesian Inference of Phylogeny
Bayesian inference of phylogeny is based upon a quantity called the posterior
probability distribution of trees, which is the probability of a tree
conditioned on the observations. The conditioning is accomplished using
Bayes's theorem. The posterior probability distribution of trees is
impossible to calculate analytically; instead, MrBayes uses a simulation
technique called Markov chain Monte Carlo (or MCMC) to approximate the
posterior probabilities of trees.
drwxr-xr-x root/root 0 2013-05-25 04:26 ./
drwxr-xr-x root/root 0 2013-05-25 04:26 ./usr/
drwxr-xr-x root/root 0 2013-05-25 04:26 ./usr/bin/
-rwxr-xr-x root/root 1358120 2013-05-25 04:26 ./usr/bin/mb
drwxr-xr-x root/root 0 2013-05-25 04:26 ./usr/share/
drwxr-xr-x root/root 0 2013-05-25 04:26 ./usr/share/doc/
drwxr-xr-x root/root 0 2013-05-25 04:26 ./usr/share/doc/mrbayes/
-rw-r--r-- root/root 311 2011-02-04 06:46 ./usr/share/doc/mrbayes/README.Debian
-rw-r--r-- root/root 1482 2012-04-03 08:45 ./usr/share/doc/mrbayes/copyright
-rw-r--r-- root/root 1278 2012-08-10 13:49 ./usr/share/doc/mrbayes/changelog.Debian.gz
drwxr-xr-x root/root 0 2013-05-25 04:26 ./usr/share/man/
drwxr-xr-x root/root 0 2013-05-25 04:26 ./usr/share/man/man1/
-rw-r--r-- root/root 206 2013-05-25 04:26 ./usr/share/man/man1/mb.1.gz
mrbayes-mpi_3.2.1+dfsg-2_armhf.deb
──────────────────────────────────
new debian package, version 2.0.
size 496678 bytes: control archive=958 bytes.
1002 bytes, 21 lines control
399 bytes, 6 lines md5sums
Package: mrbayes-mpi
Source: mrbayes
Version: 3.2.1+dfsg-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1406
Depends: libc6 (>= 2.13-28), libhmsbeagle1, libopenmpi1.3, libreadline6 (>= 6.0), mpi-default-bin
Suggests: mpi-default, mrbayes-doc
Section: science
Priority: optional
Homepage: http://mrbayes.csit.fsu.edu/
Description: Bayesian Inference of Phylogeny - mpi version
Bayesian inference of phylogeny is based upon a quantity called the posterior
probability distribution of trees, which is the probability of a tree
conditioned on the observations. The conditioning is accomplished using
Bayes's theorem. The posterior probability distribution of trees is
impossible to calculate analytically; instead, MrBayes uses a simulation
technique called Markov chain Monte Carlo (or MCMC) to approximate the
posterior probabilities of trees.
.
This package offers a binary compiled for parallel computation with MPI.
drwxr-xr-x root/root 0 2013-05-25 04:26 ./
drwxr-xr-x root/root 0 2013-05-25 04:26 ./usr/
drwxr-xr-x root/root 0 2013-05-25 04:26 ./usr/lib/
drwxr-xr-x root/root 0 2013-05-25 04:26 ./usr/lib/mrbayes-mpi/
-rwxr-xr-x root/root 1435992 2013-05-25 04:26 ./usr/lib/mrbayes-mpi/mb-mpi
drwxr-xr-x root/root 0 2013-05-25 04:26 ./usr/bin/
-rwxr-xr-x root/root 162 2011-12-14 16:35 ./usr/bin/mb-mpi
drwxr-xr-x root/root 0 2013-05-25 04:26 ./usr/share/
drwxr-xr-x root/root 0 2013-05-25 04:26 ./usr/share/doc/
drwxr-xr-x root/root 0 2013-05-25 04:26 ./usr/share/doc/mrbayes-mpi/
-rw-r--r-- root/root 348 2011-02-04 06:46 ./usr/share/doc/mrbayes-mpi/README.Debian
-rw-r--r-- root/root 1482 2012-04-03 08:45 ./usr/share/doc/mrbayes-mpi/copyright
-rw-r--r-- root/root 1278 2012-08-10 13:49 ./usr/share/doc/mrbayes-mpi/changelog.Debian.gz
drwxr-xr-x root/root 0 2013-05-25 04:26 ./usr/share/man/
drwxr-xr-x root/root 0 2013-05-25 04:26 ./usr/share/man/man1/
-rw-r--r-- root/root 226 2013-05-25 04:26 ./usr/share/man/man1/mb-mpi.1.gz
mrbayes-dbg_3.2.1+dfsg-2_armhf.deb
──────────────────────────────────
new debian package, version 2.0.
size 1162138 bytes: control archive=990 bytes.
1193 bytes, 23 lines control
362 bytes, 4 lines md5sums
Package: mrbayes-dbg
Source: mrbayes
Version: 3.2.1+dfsg-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1263
Depends: mrbayes (= 3.2.1+dfsg-2) | mrbayes-mpi (= 3.2.1+dfsg-2)
Conflicts: mrbayes (>> 3.2.1+dfsg-2), mrbayes (<< 3.2.1+dfsg-2), mrbayes-mpi (>> 3.2.1+dfsg-2), mrbayes-mpi (<< 3.2.1+dfsg-2)
Section: debug
Priority: extra
Homepage: http://mrbayes.csit.fsu.edu/
Description: Bayesian Inference of Phylogeny - debug symbols
Bayesian inference of phylogeny is based upon a quantity called the posterior
probability distribution of trees, which is the probability of a tree
conditioned on the observations. The conditioning is accomplished using
Bayes's theorem. The posterior probability distribution of trees is
impossible to calculate analytically; instead, MrBayes uses a simulation
technique called Markov chain Monte Carlo (or MCMC) to approximate the
posterior probabilities of trees.
.
The package provides the debug symbols that are otherwise stripped from
the binaries to reduce the footprint of the package. This package can be
installed to help debugging of problems when running mrbayes.
drwxr-xr-x root/root 0 2013-05-25 04:26 ./
drwxr-xr-x root/root 0 2013-05-25 04:26 ./usr/
drwxr-xr-x root/root 0 2013-05-25 04:26 ./usr/share/
drwxr-xr-x root/root 0 2013-05-25 04:26 ./usr/share/doc/
drwxr-xr-x root/root 0 2013-05-25 04:26 ./usr/share/doc/mrbayes-dbg/
-rw-r--r-- root/root 1482 2012-04-03 08:45 ./usr/share/doc/mrbayes-dbg/copyright
-rw-r--r-- root/root 1278 2012-08-10 13:49 ./usr/share/doc/mrbayes-dbg/changelog.Debian.gz
drwxr-xr-x root/root 0 2013-05-25 04:26 ./usr/lib/
drwxr-xr-x root/root 0 2013-05-25 04:26 ./usr/lib/debug/
drwxr-xr-x root/root 0 2013-05-25 04:26 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2013-05-25 04:26 ./usr/lib/debug/.build-id/c2/
-rw-r--r-- root/root 639562 2013-05-25 04:26 ./usr/lib/debug/.build-id/c2/d2e65d0a2d25d7f2e4422dfb13765cca7f4b66.debug
drwxr-xr-x root/root 0 2013-05-25 04:26 ./usr/lib/debug/.build-id/70/
-rw-r--r-- root/root 650031 2013-05-25 04:26 ./usr/lib/debug/.build-id/70/35765090a728adbef605e476e160005df2788a.debug
┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
┌──────────────────────────────────────────────────────────────────────────────┐
│ Cleanup │
└──────────────────────────────────────────────────────────────────────────────┘
Purging /«BUILDDIR»
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary │
└──────────────────────────────────────────────────────────────────────────────┘
Build Architecture: armhf
Build-Space: 23408
Build-Time: 932
Distribution: jessie-staging
Host Architecture: armhf
Install-Time: 186
Job: mrbayes_3.2.1+dfsg-2
Machine Architecture: armhf
Package: mrbayes
Package-Time: 1181
Source-Version: 3.2.1+dfsg-2
Space: 23408
Status: successful
Version: 3.2.1+dfsg-2
────────────────────────────────────────────────────────────────────────────────
Finished at 20130525-0426
Build needed 00:19:41, 23408k disc space