molmodel →
3.1.0-4 →
armhf → 2023-12-01 11:38:58
sbuild (Debian sbuild) 0.85.0 (04 January 2023) on test2023
+==============================================================================+
| molmodel 3.1.0-4 (armhf) Fri, 01 Dec 2023 11:35:41 +0000 |
+==============================================================================+
Package: molmodel
Version: 3.1.0-4
Source Version: 3.1.0-4
Distribution: trixie-staging
Machine Architecture: arm64
Host Architecture: armhf
Build Architecture: armhf
Build Type: any
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/trixie-staging-armhf-sbuild-cde610e0-244f-4436-a6cf-47783d1f51cc' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/molmodel-ljhOip/resolver-aKzCs7' with '<<RESOLVERDIR>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private trixie-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private trixie-staging/main Sources [14.3 MB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf Packages [15.0 MB]
Fetched 29.2 MB in 5s (5575 kB/s)
Reading package lists...
W: http://172.17.4.1/private/dists/trixie-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'molmodel' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/debichem-team/molmodel.git
Please use:
git clone https://salsa.debian.org/debichem-team/molmodel.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 11.1 MB of source archives.
Get:1 http://172.17.4.1/private trixie-staging/main molmodel 3.1.0-4 (dsc) [2227 B]
Get:2 http://172.17.4.1/private trixie-staging/main molmodel 3.1.0-4 (tar) [11.1 MB]
Get:3 http://172.17.4.1/private trixie-staging/main molmodel 3.1.0-4 (diff) [4480 B]
Fetched 11.1 MB in 1s (8312 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/molmodel-ljhOip/molmodel-3.1.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/molmodel-ljhOip' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: cmake, debhelper-compat (= 13), gemmi-dev, libmmdb2-dev, libopenmm-dev, libopenblas-pthread-dev, libsimbody-dev, tao-pegtl-dev, zlib1g-dev, build-essential, fakeroot
Filtered Build-Depends: cmake, debhelper-compat (= 13), gemmi-dev, libmmdb2-dev, libopenmm-dev, libopenblas-pthread-dev, libsimbody-dev, tao-pegtl-dev, zlib1g-dev, build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [609 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [732 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [764 B]
Fetched 2105 B in 0s (0 B/s)
Reading package lists...
Reading package lists...
Install main build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils bsdutils cmake
cmake-data debhelper dh-autoreconf dh-strip-nondeterminism dpkg-dev dwz file
freeglut3-dev gemmi-dev gettext gettext-base groff-base intltool-debian
libarchive-zip-perl libarchive13 libblkid1 libbrotli1 libbsd0 libcurl4
libdebhelper-perl libdpkg-perl libdrm-amdgpu1 libdrm-common libdrm-nouveau2
libdrm-radeon1 libdrm2 libedit2 libegl-dev libegl-mesa0 libegl1 libelf1
libexpat1 libfile-stripnondeterminism-perl libgbm1 libgfortran5 libgl-dev
libgl1 libgl1-mesa-dev libgl1-mesa-dri libglapi-mesa libgles-dev libgles1
libgles2 libglu1-mesa libglu1-mesa-dev libglut-dev libglut3.12
libglvnd-core-dev libglvnd-dev libglvnd0 libglx-dev libglx-mesa0 libglx0
libice-dev libice6 libicu72 libjsoncpp25 liblapack-dev liblapack3 libllvm15
libmagic-mgc libmagic1 libmmdb2-0 libmmdb2-dev libmount1 libnghttp2-14
libopenblas-pthread-dev libopenblas0-pthread libopengl-dev libopengl0
libopenmm-dev libopenmm8.0 libpipeline1 libproc2-0 libpsl5
libpthread-stubs0-dev librhash0 librtmp1 libsensors-config libsensors5
libsimbody-dev libsimbody3.7 libsm-dev libsm6 libsmartcols1 libssh2-1
libsub-override-perl libtool libuchardet0 libuuid1 libuv1 libwayland-client0
libwayland-server0 libx11-6 libx11-data libx11-dev libx11-xcb1 libxau-dev
libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0
libxcb-randr0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxcb1-dev
libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes-dev libxfixes3
libxi-dev libxi6 libxml2 libxmu-dev libxmu-headers libxmu6 libxshmfence1
libxt-dev libxt6 libxxf86vm1 libz3-4 m4 man-db mount po-debconf procps
sensible-utils tao-pegtl-dev util-linux x11-common x11proto-dev
xorg-sgml-doctools xtrans-dev zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc cmake-doc cmake-format
elpa-cmake-mode ninja-build dh-make debian-keyring gettext-doc
libasprintf-dev libgettextpo-dev groff lrzip git bzr libice-doc
liblapack-doc cryptsetup-bin lm-sensors libsm-doc libtool-doc gfortran
| fortran95-compiler gcj-jdk libx11-doc libxcb-doc libxext-doc libxt-doc
m4-doc apparmor less www-browser nfs-common libmail-box-perl dosfstools kbd
util-linux-extra util-linux-locales
Recommended packages:
libalgorithm-merge-perl curl | wget | lynx ca-certificates
libfile-fcntllock-perl libarchive-cpio-perl publicsuffix libltdl-dev
uuid-runtime libmail-sendmail-perl psmisc
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils cmake cmake-data
debhelper dh-autoreconf dh-strip-nondeterminism dwz file freeglut3-dev
gemmi-dev gettext gettext-base groff-base intltool-debian
libarchive-zip-perl libarchive13 libbrotli1 libbsd0 libcurl4
libdebhelper-perl libdrm-amdgpu1 libdrm-common libdrm-nouveau2
libdrm-radeon1 libdrm2 libedit2 libegl-dev libegl-mesa0 libegl1 libelf1
libexpat1 libfile-stripnondeterminism-perl libgbm1 libgfortran5 libgl-dev
libgl1 libgl1-mesa-dev libgl1-mesa-dri libglapi-mesa libgles-dev libgles1
libgles2 libglu1-mesa libglu1-mesa-dev libglut-dev libglut3.12
libglvnd-core-dev libglvnd-dev libglvnd0 libglx-dev libglx-mesa0 libglx0
libice-dev libice6 libicu72 libjsoncpp25 liblapack-dev liblapack3 libllvm15
libmagic-mgc libmagic1 libmmdb2-0 libmmdb2-dev libnghttp2-14
libopenblas-pthread-dev libopenblas0-pthread libopengl-dev libopengl0
libopenmm-dev libopenmm8.0 libpipeline1 libproc2-0 libpsl5
libpthread-stubs0-dev librhash0 librtmp1 libsensors-config libsensors5
libsimbody-dev libsimbody3.7 libsm-dev libsm6 libssh2-1 libsub-override-perl
libtool libuchardet0 libuv1 libwayland-client0 libwayland-server0 libx11-6
libx11-data libx11-dev libx11-xcb1 libxau-dev libxau6 libxcb-dri2-0
libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-shm0
libxcb-sync1 libxcb-xfixes0 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6
libxext-dev libxext6 libxfixes-dev libxfixes3 libxi-dev libxi6 libxml2
libxmu-dev libxmu-headers libxmu6 libxshmfence1 libxt-dev libxt6 libxxf86vm1
libz3-4 m4 man-db po-debconf procps sbuild-build-depends-main-dummy
sensible-utils tao-pegtl-dev x11-common x11proto-dev xorg-sgml-doctools
xtrans-dev zlib1g-dev
The following packages will be upgraded:
bsdutils dpkg-dev libblkid1 libdpkg-perl libmount1 libsmartcols1 libuuid1
mount util-linux
9 upgraded, 138 newly installed, 0 to remove and 40 not upgraded.
1 not fully installed or removed.
Need to get 90.2 MB/92.2 MB of archives.
After this operation, 378 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [932 B]
Get:2 http://172.17.4.1/private trixie-staging/main armhf mount armhf 2.39.2-6 [134 kB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf bsdutils armhf 1:2.39.2-6 [86.5 kB]
Get:4 http://172.17.4.1/private trixie-staging/main armhf util-linux armhf 2.39.2-6 [1110 kB]
Get:5 http://172.17.4.1/private trixie-staging/main armhf libblkid1 armhf 2.39.2-6 [145 kB]
Get:6 http://172.17.4.1/private trixie-staging/main armhf libmount1 armhf 2.39.2-6 [167 kB]
Get:7 http://172.17.4.1/private trixie-staging/main armhf libsmartcols1 armhf 2.39.2-6 [102 kB]
Get:8 http://172.17.4.1/private trixie-staging/main armhf libuuid1 armhf 2.39.2-6 [28.1 kB]
Get:9 http://172.17.4.1/private trixie-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:10 http://172.17.4.1/private trixie-staging/main armhf groff-base armhf 1.23.0-3 [1033 kB]
Get:11 http://172.17.4.1/private trixie-staging/main armhf bsdextrautils armhf 2.39.2-6 [81.2 kB]
Get:12 http://172.17.4.1/private trixie-staging/main armhf libpipeline1 armhf 1.5.7-1 [33.4 kB]
Get:13 http://172.17.4.1/private trixie-staging/main armhf man-db armhf 2.12.0-1 [1358 kB]
Get:14 http://172.17.4.1/private trixie-staging/main armhf libproc2-0 armhf 2:4.0.4-2 [54.9 kB]
Get:15 http://172.17.4.1/private trixie-staging/main armhf procps armhf 2:4.0.4-2 [848 kB]
Get:16 http://172.17.4.1/private trixie-staging/main armhf sensible-utils all 0.0.20 [19.3 kB]
Get:17 http://172.17.4.1/private trixie-staging/main armhf libmagic-mgc armhf 1:5.45-2 [314 kB]
Get:18 http://172.17.4.1/private trixie-staging/main armhf libmagic1 armhf 1:5.45-2 [96.1 kB]
Get:19 http://172.17.4.1/private trixie-staging/main armhf file armhf 1:5.45-2 [41.6 kB]
Get:20 http://172.17.4.1/private trixie-staging/main armhf gettext-base armhf 0.21-13 [156 kB]
Get:21 http://172.17.4.1/private trixie-staging/main armhf m4 armhf 1.4.19-4 [256 kB]
Get:22 http://172.17.4.1/private trixie-staging/main armhf autoconf all 2.71-3 [332 kB]
Get:23 http://172.17.4.1/private trixie-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:24 http://172.17.4.1/private trixie-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:25 http://172.17.4.1/private trixie-staging/main armhf autopoint all 0.21-13 [496 kB]
Get:26 http://172.17.4.1/private trixie-staging/main armhf libicu72 armhf 72.1-4 [9009 kB]
Get:27 http://172.17.4.1/private trixie-staging/main armhf libxml2 armhf 2.9.14+dfsg-1.3 [571 kB]
Get:28 http://172.17.4.1/private trixie-staging/main armhf libarchive13 armhf 3.7.2-1 [294 kB]
Get:29 http://172.17.4.1/private trixie-staging/main armhf libbrotli1 armhf 1.1.0-2 [280 kB]
Get:30 http://172.17.4.1/private trixie-staging/main armhf libnghttp2-14 armhf 1.58.0-1 [61.7 kB]
Get:31 http://172.17.4.1/private trixie-staging/main armhf libpsl5 armhf 0.21.2-1+b1 [57.8 kB]
Get:32 http://172.17.4.1/private trixie-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:33 http://172.17.4.1/private trixie-staging/main armhf libssh2-1 armhf 1.11.0-2 [195 kB]
Get:34 http://172.17.4.1/private trixie-staging/main armhf libcurl4 armhf 8.4.0-2+rpi1 [362 kB]
Get:35 http://172.17.4.1/private trixie-staging/main armhf libexpat1 armhf 2.5.0-2 [76.8 kB]
Get:36 http://172.17.4.1/private trixie-staging/main armhf libjsoncpp25 armhf 1.9.5-6 [64.7 kB]
Get:37 http://172.17.4.1/private trixie-staging/main armhf librhash0 armhf 1.4.3-3 [142 kB]
Get:38 http://172.17.4.1/private trixie-staging/main armhf libuv1 armhf 1.46.0-2+rpi1 [128 kB]
Get:39 http://172.17.4.1/private trixie-staging/main armhf cmake-data all 3.27.8-1 [2104 kB]
Get:40 http://172.17.4.1/private trixie-staging/main armhf cmake armhf 3.27.8-1 [7635 kB]
Get:41 http://172.17.4.1/private trixie-staging/main armhf libdebhelper-perl all 13.11.8 [82.1 kB]
Get:42 http://172.17.4.1/private trixie-staging/main armhf libtool all 2.4.7-7 [517 kB]
Get:43 http://172.17.4.1/private trixie-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:44 http://172.17.4.1/private trixie-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:45 http://172.17.4.1/private trixie-staging/main armhf libsub-override-perl all 0.09-4 [9304 B]
Get:46 http://172.17.4.1/private trixie-staging/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get:47 http://172.17.4.1/private trixie-staging/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get:48 http://172.17.4.1/private trixie-staging/main armhf libelf1 armhf 0.188-2.1+rpi1 [171 kB]
Get:49 http://172.17.4.1/private trixie-staging/main armhf dwz armhf 0.15-1 [92.4 kB]
Get:50 http://172.17.4.1/private trixie-staging/main armhf gettext armhf 0.21-13 [1201 kB]
Get:51 http://172.17.4.1/private trixie-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:52 http://172.17.4.1/private trixie-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:53 http://172.17.4.1/private trixie-staging/main armhf debhelper all 13.11.8 [956 kB]
Get:54 http://172.17.4.1/private trixie-staging/main armhf libglvnd0 armhf 1.7.0-1 [49.4 kB]
Get:55 http://172.17.4.1/private trixie-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:56 http://172.17.4.1/private trixie-staging/main armhf libbsd0 armhf 0.11.7-4 [111 kB]
Get:57 http://172.17.4.1/private trixie-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:58 http://172.17.4.1/private trixie-staging/main armhf libxcb1 armhf 1.15-1 [139 kB]
Get:59 http://172.17.4.1/private trixie-staging/main armhf libx11-data all 2:1.8.7-1 [328 kB]
Get:60 http://172.17.4.1/private trixie-staging/main armhf libx11-6 armhf 2:1.8.7-1 [729 kB]
Get:61 http://172.17.4.1/private trixie-staging/main armhf libdrm-common all 2.4.117-1+rpi1 [7468 B]
Get:62 http://172.17.4.1/private trixie-staging/main armhf libdrm2 armhf 2.4.117-1+rpi1 [33.3 kB]
Get:63 http://172.17.4.1/private trixie-staging/main armhf libglapi-mesa armhf 23.1.7-1+rpi1 [46.1 kB]
Get:64 http://172.17.4.1/private trixie-staging/main armhf libx11-xcb1 armhf 2:1.8.7-1 [231 kB]
Get:65 http://172.17.4.1/private trixie-staging/main armhf libxcb-dri2-0 armhf 1.15-1 [107 kB]
Get:66 http://172.17.4.1/private trixie-staging/main armhf libxcb-dri3-0 armhf 1.15-1 [107 kB]
Get:67 http://172.17.4.1/private trixie-staging/main armhf libxcb-glx0 armhf 1.15-1 [121 kB]
Get:68 http://172.17.4.1/private trixie-staging/main armhf libxcb-present0 armhf 1.15-1 [105 kB]
Get:69 http://172.17.4.1/private trixie-staging/main armhf libxcb-randr0 armhf 1.15-1 [116 kB]
Get:70 http://172.17.4.1/private trixie-staging/main armhf libxcb-shm0 armhf 1.15-1 [106 kB]
Get:71 http://172.17.4.1/private trixie-staging/main armhf libxcb-sync1 armhf 1.15-1 [108 kB]
Get:72 http://172.17.4.1/private trixie-staging/main armhf libxcb-xfixes0 armhf 1.15-1 [109 kB]
Get:73 http://172.17.4.1/private trixie-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:74 http://172.17.4.1/private trixie-staging/main armhf libxfixes3 armhf 1:6.0.0-2 [21.2 kB]
Get:75 http://172.17.4.1/private trixie-staging/main armhf libxshmfence1 armhf 1.3-1 [8636 B]
Get:76 http://172.17.4.1/private trixie-staging/main armhf libxxf86vm1 armhf 1:1.1.4-1+b2 [20.1 kB]
Get:77 http://172.17.4.1/private trixie-staging/main armhf libdrm-amdgpu1 armhf 2.4.117-1+rpi1 [19.8 kB]
Get:78 http://172.17.4.1/private trixie-staging/main armhf libdrm-nouveau2 armhf 2.4.117-1+rpi1 [17.1 kB]
Get:79 http://172.17.4.1/private trixie-staging/main armhf libdrm-radeon1 armhf 2.4.117-1+rpi1 [20.8 kB]
Get:80 http://172.17.4.1/private trixie-staging/main armhf libedit2 armhf 3.1-20230828-1 [76.0 kB]
Get:81 http://172.17.4.1/private trixie-staging/main armhf libz3-4 armhf 4.8.12-3.1 [5797 kB]
Get:82 http://172.17.4.1/private trixie-staging/main armhf libllvm15 armhf 1:15.0.7-10+rpi1 [20.7 MB]
Get:83 http://172.17.4.1/private trixie-staging/main armhf libsensors-config all 1:3.6.0-8 [14.4 kB]
Get:84 http://172.17.4.1/private trixie-staging/main armhf libsensors5 armhf 1:3.6.0-8 [31.7 kB]
Get:85 http://172.17.4.1/private trixie-staging/main armhf libgl1-mesa-dri armhf 23.1.7-1+rpi1 [5778 kB]
Get:86 http://172.17.4.1/private trixie-staging/main armhf libglx-mesa0 armhf 23.1.7-1+rpi1 [130 kB]
Get:87 http://172.17.4.1/private trixie-staging/main armhf libglx0 armhf 1.7.0-1 [32.2 kB]
Get:88 http://172.17.4.1/private trixie-staging/main armhf libgl1 armhf 1.7.0-1 [89.3 kB]
Get:89 http://172.17.4.1/private trixie-staging/main armhf libxi6 armhf 2:1.8-1 [78.1 kB]
Get:90 http://172.17.4.1/private trixie-staging/main armhf libglut3.12 armhf 3.4.0-1 [124 kB]
Get:91 http://172.17.4.1/private trixie-staging/main armhf xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB]
Get:92 http://172.17.4.1/private trixie-staging/main armhf x11proto-dev all 2023.2-1 [598 kB]
Get:93 http://172.17.4.1/private trixie-staging/main armhf libxau-dev armhf 1:1.0.9-1 [22.3 kB]
Get:94 http://172.17.4.1/private trixie-staging/main armhf libxdmcp-dev armhf 1:1.1.2-3 [40.9 kB]
Get:95 http://172.17.4.1/private trixie-staging/main armhf xtrans-dev all 1.4.0-1 [98.7 kB]
Get:96 http://172.17.4.1/private trixie-staging/main armhf libpthread-stubs0-dev armhf 0.4-1 [5344 B]
Get:97 http://172.17.4.1/private trixie-staging/main armhf libxcb1-dev armhf 1.15-1 [175 kB]
Get:98 http://172.17.4.1/private trixie-staging/main armhf libx11-dev armhf 2:1.8.7-1 [807 kB]
Get:99 http://172.17.4.1/private trixie-staging/main armhf libglx-dev armhf 1.7.0-1 [15.5 kB]
Get:100 http://172.17.4.1/private trixie-staging/main armhf libgl-dev armhf 1.7.0-1 [100 kB]
Get:101 http://172.17.4.1/private trixie-staging/main armhf libglvnd-core-dev armhf 1.7.0-1 [13.1 kB]
Get:102 http://172.17.4.1/private trixie-staging/main armhf libwayland-server0 armhf 1.22.0-2.1 [26.0 kB]
Get:103 http://172.17.4.1/private trixie-staging/main armhf libgbm1 armhf 23.1.7-1+rpi1 [35.1 kB]
Get:104 http://172.17.4.1/private trixie-staging/main armhf libwayland-client0 armhf 1.22.0-2.1 [20.0 kB]
Get:105 http://172.17.4.1/private trixie-staging/main armhf libegl-mesa0 armhf 23.1.7-1+rpi1 [94.3 kB]
Get:106 http://172.17.4.1/private trixie-staging/main armhf libegl1 armhf 1.7.0-1 [28.4 kB]
Get:107 http://172.17.4.1/private trixie-staging/main armhf libegl-dev armhf 1.7.0-1 [19.2 kB]
Get:108 http://172.17.4.1/private trixie-staging/main armhf libgles1 armhf 1.7.0-1 [11.8 kB]
Get:109 http://172.17.4.1/private trixie-staging/main armhf libgles2 armhf 1.7.0-1 [17.3 kB]
Get:110 http://172.17.4.1/private trixie-staging/main armhf libgles-dev armhf 1.7.0-1 [50.5 kB]
Get:111 http://172.17.4.1/private trixie-staging/main armhf libopengl0 armhf 1.7.0-1 [31.8 kB]
Get:112 http://172.17.4.1/private trixie-staging/main armhf libopengl-dev armhf 1.7.0-1 [5104 B]
Get:113 http://172.17.4.1/private trixie-staging/main armhf libglvnd-dev armhf 1.7.0-1 [4868 B]
Get:114 http://172.17.4.1/private trixie-staging/main armhf libgl1-mesa-dev armhf 23.1.7-1+rpi1 [15.3 kB]
Get:115 http://172.17.4.1/private trixie-staging/main armhf libglu1-mesa armhf 9.0.2-1.1 [133 kB]
Get:116 http://172.17.4.1/private trixie-staging/main armhf libglu1-mesa-dev armhf 9.0.2-1.1 [175 kB]
Get:117 http://172.17.4.1/private trixie-staging/main armhf libxext-dev armhf 2:1.3.4-1 [102 kB]
Get:118 http://172.17.4.1/private trixie-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:119 http://172.17.4.1/private trixie-staging/main armhf libice6 armhf 2:1.0.10-1 [51.7 kB]
Get:120 http://172.17.4.1/private trixie-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:121 http://172.17.4.1/private trixie-staging/main armhf libxt6 armhf 1:1.2.1-1.1 [155 kB]
Get:122 http://172.17.4.1/private trixie-staging/main armhf libice-dev armhf 2:1.0.10-1 [58.7 kB]
Get:123 http://172.17.4.1/private trixie-staging/main armhf libsm-dev armhf 2:1.2.3-1 [35.4 kB]
Get:124 http://172.17.4.1/private trixie-staging/main armhf libxt-dev armhf 1:1.2.1-1.1 [368 kB]
Get:125 http://172.17.4.1/private trixie-staging/main armhf libglut-dev armhf 3.4.0-1 [146 kB]
Get:126 http://172.17.4.1/private trixie-staging/main armhf freeglut3-dev armhf 3.4.0-1 [53.1 kB]
Get:127 http://172.17.4.1/private trixie-staging/main armhf gemmi-dev armhf 0.6.3+ds-1 [1046 kB]
Get:128 http://172.17.4.1/private trixie-staging/main armhf libgfortran5 armhf 13.2.0-5+rpi1 [247 kB]
Get:129 http://172.17.4.1/private trixie-staging/main armhf libopenblas0-pthread armhf 0.3.24+ds-1+rpi1 [2217 kB]
Get:130 http://172.17.4.1/private trixie-staging/main armhf liblapack3 armhf 3.11.0-2 [1624 kB]
Get:131 http://172.17.4.1/private trixie-staging/main armhf libopenblas-pthread-dev armhf 0.3.24+ds-1+rpi1 [2054 kB]
Get:132 http://172.17.4.1/private trixie-staging/main armhf liblapack-dev armhf 3.11.0-2 [3007 kB]
Get:133 http://172.17.4.1/private trixie-staging/main armhf libmmdb2-0 armhf 2.0.22-1 [269 kB]
Get:134 http://172.17.4.1/private trixie-staging/main armhf libmmdb2-dev armhf 2.0.22-1 [92.9 kB]
Get:135 http://172.17.4.1/private trixie-staging/main armhf libopenmm8.0 armhf 8.0.0+dfsg-6 [834 kB]
Get:136 http://172.17.4.1/private trixie-staging/main armhf libopenmm-dev armhf 8.0.0+dfsg-6 [317 kB]
Get:137 http://172.17.4.1/private trixie-staging/main armhf libxfixes-dev armhf 1:6.0.0-2 [23.2 kB]
Get:138 http://172.17.4.1/private trixie-staging/main armhf libxi-dev armhf 2:1.8-1 [238 kB]
Get:139 http://172.17.4.1/private trixie-staging/main armhf libxmu6 armhf 2:1.1.3-3 [52.0 kB]
Get:140 http://172.17.4.1/private trixie-staging/main armhf libxmu-headers all 2:1.1.3-3 [68.5 kB]
Get:141 http://172.17.4.1/private trixie-staging/main armhf libxmu-dev armhf 2:1.1.3-3 [56.1 kB]
Get:142 http://172.17.4.1/private trixie-staging/main armhf libsimbody3.7 armhf 3.7+dfsg-3 [2610 kB]
Get:143 http://172.17.4.1/private trixie-staging/main armhf libsimbody-dev armhf 3.7+dfsg-3 [2727 kB]
Get:144 http://172.17.4.1/private trixie-staging/main armhf tao-pegtl-dev all 3.2.7-1 [69.4 kB]
Get:145 http://172.17.4.1/private trixie-staging/main armhf zlib1g-dev armhf 1:1.2.13.dfsg-3 [901 kB]
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Setting up libexpat1:armhf (2.5.0-2) ...
Setting up libpipeline1:armhf (1.5.7-1) ...
Setting up libwayland-server0:armhf (1.22.0-2.1) ...
Setting up libxau6:armhf (1:1.0.9-1) ...
Setting up libpsl5:armhf (0.21.2-1+b1) ...
Setting up libicu72:armhf (72.1-4) ...
Setting up bsdextrautils (2.39.2-6) ...
Setting up libglvnd-core-dev:armhf (1.7.0-1) ...
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Setting up libarchive-zip-perl (1.68-1) ...
Setting up libglvnd0:armhf (1.7.0-1) ...
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Setting up gemmi-dev (0.6.3+ds-1) ...
Setting up x11-common (1:7.7+23) ...
invoke-rc.d: could not determine current runlevel
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of restart.
Setting up libsensors-config (1:3.6.0-8) ...
Setting up libnghttp2-14:armhf (1.58.0-1) ...
Setting up libmagic1:armhf (1:5.45-2) ...
Setting up gettext-base (0.21-13) ...
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Setting up libopengl0:armhf (1.7.0-1) ...
Setting up xtrans-dev (1.4.0-1) ...
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Setting up libuv1:armhf (1.46.0-2+rpi1) ...
Setting up libgles2:armhf (1.7.0-1) ...
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Setting up libgles1:armhf (1.7.0-1) ...
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Setting up libmmdb2-dev (2.0.22-1) ...
Setting up autopoint (0.21-13) ...
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Setting up libsensors5:armhf (1:3.6.0-8) ...
Setting up libglapi-mesa:armhf (23.1.7-1+rpi1) ...
Setting up libdpkg-perl (1.22.1+rpi1) ...
Setting up libgfortran5:armhf (13.2.0-5+rpi1) ...
Setting up autoconf (2.71-3) ...
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Setting up mount (2.39.2-6) ...
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Setting up librhash0:armhf (1.4.3-3) ...
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Setting up procps (2:4.0.4-2) ...
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Setting up cmake-data (3.27.8-1) ...
Setting up libglu1-mesa:armhf (9.0.2-1.1) ...
Setting up libopenmm8.0 (8.0.0+dfsg-6) ...
Setting up libopengl-dev:armhf (1.7.0-1) ...
Setting up libbsd0:armhf (0.11.7-4) ...
Setting up libdrm-common (2.4.117-1+rpi1) ...
Setting up libelf1:armhf (0.188-2.1+rpi1) ...
Setting up libxml2:armhf (2.9.14+dfsg-1.3) ...
Setting up tao-pegtl-dev (3.2.7-1) ...
Setting up libwayland-client0:armhf (1.22.0-2.1) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up x11proto-dev (2023.2-1) ...
Setting up libfile-stripnondeterminism-perl (1.13.1-1) ...
Setting up libice6:armhf (2:1.0.10-1) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
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Setting up gettext (0.21-13) ...
Setting up libopenblas0-pthread:armhf (0.3.24+ds-1+rpi1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/openblas-pthread/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
update-alternatives: using /usr/lib/arm-linux-gnueabihf/openblas-pthread/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
update-alternatives: using /usr/lib/arm-linux-gnueabihf/openblas-pthread/libopenblas.so.0 to provide /usr/lib/arm-linux-gnueabihf/libopenblas.so.0 (libopenblas.so.0-arm-linux-gnueabihf) in auto mode
Setting up libxcb-xfixes0:armhf (1.15-1) ...
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Setting up libtool (2.4.7-7) ...
Setting up libarchive13:armhf (3.7.2-1) ...
Setting up libxcb-glx0:armhf (1.15-1) ...
Setting up libedit2:armhf (3.1-20230828-1) ...
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Setting up libopenmm-dev (8.0.0+dfsg-6) ...
Setting up dpkg-dev (1.22.1+rpi1) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up libxcb-present0:armhf (1.15-1) ...
Setting up dh-autoreconf (20) ...
Setting up libxdmcp-dev:armhf (1:1.1.2-3) ...
Setting up libxcb-sync1:armhf (1.15-1) ...
Setting up libxcb-dri2-0:armhf (1.15-1) ...
Setting up dh-strip-nondeterminism (1.13.1-1) ...
Setting up libdrm2:armhf (2.4.117-1+rpi1) ...
Setting up dwz (0.15-1) ...
Setting up groff-base (1.23.0-3) ...
Setting up libxcb-randr0:armhf (1.15-1) ...
Setting up libllvm15:armhf (1:15.0.7-10+rpi1) ...
Setting up libcurl4:armhf (8.4.0-2+rpi1) ...
Setting up libx11-6:armhf (2:1.8.7-1) ...
Setting up libsm6:armhf (2:1.2.3-1) ...
Setting up libdrm-amdgpu1:armhf (2.4.117-1+rpi1) ...
Setting up libopenblas-pthread-dev:armhf (0.3.24+ds-1+rpi1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/openblas-pthread/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
update-alternatives: using /usr/lib/arm-linux-gnueabihf/openblas-pthread/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
update-alternatives: using /usr/lib/arm-linux-gnueabihf/openblas-pthread/libopenblas.so to provide /usr/lib/arm-linux-gnueabihf/libopenblas.so (libopenblas.so-arm-linux-gnueabihf) in auto mode
Setting up libxcb-dri3-0:armhf (1.15-1) ...
Setting up libx11-xcb1:armhf (2:1.8.7-1) ...
Setting up liblapack3:armhf (3.11.0-2) ...
Setting up libdrm-nouveau2:armhf (2.4.117-1+rpi1) ...
Setting up libxcb1-dev:armhf (1.15-1) ...
Setting up libgbm1:armhf (23.1.7-1+rpi1) ...
Setting up libsm-dev:armhf (2:1.2.3-1) ...
Setting up libdrm-radeon1:armhf (2.4.117-1+rpi1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libgl1-mesa-dri:armhf (23.1.7-1+rpi1) ...
Setting up libx11-dev:armhf (2:1.8.7-1) ...
Setting up libxext6:armhf (2:1.3.4-1) ...
Setting up man-db (2.12.0-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libxxf86vm1:armhf (1:1.1.4-1+b2) ...
Setting up libegl-mesa0:armhf (23.1.7-1+rpi1) ...
Setting up libxfixes3:armhf (1:6.0.0-2) ...
Setting up liblapack-dev:armhf (3.11.0-2) ...
Setting up libxt6:armhf (1:1.2.1-1.1) ...
Setting up libxext-dev:armhf (2:1.3.4-1) ...
Setting up libegl1:armhf (1.7.0-1) ...
Setting up cmake (3.27.8-1) ...
Setting up libxmu-headers (2:1.1.3-3) ...
Setting up libxmu6:armhf (2:1.1.3-3) ...
Setting up libglx-mesa0:armhf (23.1.7-1+rpi1) ...
Setting up libxi6:armhf (2:1.8-1) ...
Setting up libglx0:armhf (1.7.0-1) ...
Setting up debhelper (13.11.8) ...
Setting up libxfixes-dev:armhf (1:6.0.0-2) ...
Setting up libgl1:armhf (1.7.0-1) ...
Setting up libxt-dev:armhf (1:1.2.1-1.1) ...
Setting up libglut3.12:armhf (3.4.0-1) ...
Setting up libsimbody3.7:armhf (3.7+dfsg-3) ...
Setting up libglx-dev:armhf (1.7.0-1) ...
Setting up libxi-dev:armhf (2:1.8-1) ...
Setting up libgl-dev:armhf (1.7.0-1) ...
Setting up libegl-dev:armhf (1.7.0-1) ...
Setting up libxmu-dev:armhf (2:1.1.3-3) ...
Setting up libglu1-mesa-dev:armhf (9.0.2-1.1) ...
Setting up libgles-dev:armhf (1.7.0-1) ...
Setting up libglvnd-dev:armhf (1.7.0-1) ...
Setting up libgl1-mesa-dev:armhf (23.1.7-1+rpi1) ...
Setting up libglut-dev:armhf (3.4.0-1) ...
Setting up freeglut3-dev:armhf (3.4.0-1) ...
Setting up libsimbody-dev:armhf (3.7+dfsg-3) ...
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.37-12+rpi2) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 6.1.47-v8+ #1 SMP PREEMPT Fri Sep 1 07:05:33 BST 2023 arm64 (aarch64)
Toolchain package versions: binutils_2.41-6+rpi1 dpkg-dev_1.22.1+rpi1 g++-12_12.3.0-10+rpi1 g++-13_13.2.0-5+rpi1 gcc-12_12.3.0-10+rpi1 gcc-13_13.2.0-5+rpi1 libc6-dev_2.37-12+rpi2 libstdc++-12-dev_12.3.0-10+rpi1 libstdc++-13-dev_13.2.0-5+rpi1 libstdc++6_13.2.0-5+rpi1 linux-libc-dev_6.5.6-1+rpi1
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+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: molmodel
Binary: libsimtkmolmodel-dev, libsimtkmolmodel3.1, libsimtkmolmodel-plugins
Architecture: any
Version: 3.1.0-4
Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
Uploaders: Andrius Merkys <merkys@debian.org>,
Homepage: https://simtk.org/projects/molmodel
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/debichem-team/molmodel
Vcs-Git: https://salsa.debian.org/debichem-team/molmodel.git
Build-Depends: cmake, debhelper-compat (= 13), gemmi-dev, libmmdb2-dev, libopenmm-dev, libopenblas-pthread-dev, libsimbody-dev, tao-pegtl-dev, zlib1g-dev
Package-List:
libsimtkmolmodel-dev deb libdevel optional arch=any
libsimtkmolmodel-plugins deb libs optional arch=any
libsimtkmolmodel3.1 deb libs optional arch=any
Checksums-Sha1:
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0ca5b68b7af1abda35ebf33b55ec7e311ab59497 4480 molmodel_3.1.0-4.debian.tar.xz
Checksums-Sha256:
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Files:
082b507dc0ac23db29b0984b28176c41 11118182 molmodel_3.1.0.orig.tar.gz
c100ea37f960949d37e777a9f241442d 4480 molmodel_3.1.0-4.debian.tar.xz
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gpgv: Signature made Thu Jul 20 08:51:10 2023 UTC
gpgv: using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287
gpgv: issuer "merkys@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./molmodel_3.1.0-4.dsc: no acceptable signature found
dpkg-source: info: extracting molmodel in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking molmodel_3.1.0.orig.tar.gz
dpkg-source: info: unpacking molmodel_3.1.0-4.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying drop-CMAKE_CXX_STANDARD.patch
dpkg-source: info: applying plugin_dir.patch
dpkg-source: info: applying f8492b9346dd8a2c32e3aa815294a3248b051d1f.patch
dpkg-source: info: applying 968a0af8bc1a224337a3d1e1bd2fec3aec9e3fa1.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LANG=en_GB.UTF-8
LC_ALL=C.UTF-8
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=trixie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=trixie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=124
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=trixie-staging-armhf-sbuild-cde610e0-244f-4436-a6cf-47783d1f51cc
SCHROOT_UID=114
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage --sanitize-env -us -uc -mRaspbian pi5 test autobuilder <root@raspbian.org> -B -rfakeroot
dpkg-buildpackage: info: source package molmodel
dpkg-buildpackage: info: source version 3.1.0-4
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean
dh_clean
debian/rules binary-arch
dh binary-arch
dh_update_autotools_config -a
dh_autoreconf -a
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure -- -DBUILD_EXAMPLES=OFF -DBUILD_TESTING=OFF
cd obj-arm-linux-gnueabihf && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf -DBUILD_EXAMPLES=OFF -DBUILD_TESTING=OFF ..
-- The C compiler identification is GNU 13.2.0
-- The CXX compiler identification is GNU 13.2.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found OpenMM: /usr/include
-- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.13")
CMake Warning (dev) at CMakeLists.txt:277 (INCLUDE):
Policy CMP0145 is not set: The Dart and FindDart modules are removed. Run
"cmake --help-policy CMP0145" for policy details. Use the cmake_policy
command to set the policy and suppress this warning.
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at /usr/share/cmake-3.27/Modules/Dart.cmake:47 (message):
Policy CMP0145 is not set: The Dart and FindDart modules are removed. Run
"cmake --help-policy CMP0145" for policy details. Use the cmake_policy
command to set the policy and suppress this warning.
Call Stack (most recent call first):
CMakeLists.txt:277 (INCLUDE)
This warning is for project developers. Use -Wno-dev to suppress it.
-- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE)
-- Configuring done (0.8s)
-- Generating done (0.0s)
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_EXPORT_NO_PACKAGE_REGISTRY
CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY
FETCHCONTENT_FULLY_DISCONNECTED
-- Build files have been written to: /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build -a
cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -S/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f CMakeFiles/SimTKmolmodel.dir/build.make CMakeFiles/SimTKmolmodel.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles/SimTKmolmodel.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f CMakeFiles/SimTKmolmodel.dir/build.make CMakeFiles/SimTKmolmodel.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 9%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/About.cpp.o
[ 9%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/Biotype.cpp.o
[ 12%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/BondGeometry.cpp.o
[ 12%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/AtomSubsystem.cpp.o
/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/Biotype.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/Biotype.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/Biotype.cpp.o -c /<<PKGBUILDDIR>>/src/Biotype.cpp
/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/About.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/About.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/About.cpp.o -c /<<PKGBUILDDIR>>/src/About.cpp
/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/AtomSubsystem.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/AtomSubsystem.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/AtomSubsystem.cpp.o -c /<<PKGBUILDDIR>>/src/AtomSubsystem.cpp
/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/BondGeometry.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/BondGeometry.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/BondGeometry.cpp.o -c /<<PKGBUILDDIR>>/src/BondGeometry.cpp
In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36,
from /usr/include/simbody/SimTKcommon.h:35,
from /<<PKGBUILDDIR>>/src/About.cpp:37:
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(double)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1169 | approxCompleteEllipticIntegralsKE(double m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::approxCompleteEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1177 | approxCompleteEllipticIntegralsKE(float m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1186 | approxCompleteEllipticIntegralsKE(int m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::completeEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1257 | inline std::pair<float,float> completeEllipticIntegralsKE(float m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::completeEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1265 | inline std::pair<double,double> completeEllipticIntegralsKE(int m)
| ^
In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36,
from /usr/include/simbody/SimTKcommon.h:35,
from /<<PKGBUILDDIR>>/src/BiotypeRep.h:36,
from /<<PKGBUILDDIR>>/src/Biotype.cpp:37:
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(double)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1169 | approxCompleteEllipticIntegralsKE(double m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::approxCompleteEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1177 | approxCompleteEllipticIntegralsKE(float m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1186 | approxCompleteEllipticIntegralsKE(int m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::completeEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1257 | inline std::pair<float,float> completeEllipticIntegralsKE(float m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::completeEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1265 | inline std::pair<double,double> completeEllipticIntegralsKE(int m)
| ^
In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36,
from /usr/include/simbody/SimTKcommon.h:35,
from /<<PKGBUILDDIR>>/./include/molmodel/internal/common.h:40,
from /<<PKGBUILDDIR>>/./include/molmodel/internal/bondGeometry.h:35,
from /<<PKGBUILDDIR>>/src/BondGeometry.cpp:1:
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(double)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1169 | approxCompleteEllipticIntegralsKE(double m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::approxCompleteEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1177 | approxCompleteEllipticIntegralsKE(float m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1186 | approxCompleteEllipticIntegralsKE(int m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::completeEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1257 | inline std::pair<float,float> completeEllipticIntegralsKE(float m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::completeEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1265 | inline std::pair<double,double> completeEllipticIntegralsKE(int m)
| ^
In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36,
from /usr/include/simbody/SimTKcommon.h:35,
from /usr/include/simbody/SimTKsimbody.h:43,
from /<<PKGBUILDDIR>>/./include/molmodel/internal/AtomSubsystem.h:4,
from /<<PKGBUILDDIR>>/src/AtomSubsystem.cpp:1:
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(double)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1169 | approxCompleteEllipticIntegralsKE(double m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::approxCompleteEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1177 | approxCompleteEllipticIntegralsKE(float m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1186 | approxCompleteEllipticIntegralsKE(int m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::completeEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1257 | inline std::pair<float,float> completeEllipticIntegralsKE(float m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::completeEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1265 | inline std::pair<double,double> completeEllipticIntegralsKE(int m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1178:54: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1095 | static inline std::pair<T,T> approxCompleteEllipticIntegralsKE_T(T m) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1249:49: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1258:48: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1178:54: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1095 | static inline std::pair<T,T> approxCompleteEllipticIntegralsKE_T(T m) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1249:49: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1258:48: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1178:54: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1095 | static inline std::pair<T,T> approxCompleteEllipticIntegralsKE_T(T m) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1249:49: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1258:48: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
[ 15%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/Compound.cpp.o
/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/Compound.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/Compound.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/Compound.cpp.o -c /<<PKGBUILDDIR>>/src/Compound.cpp
[ 18%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/CompoundSystem.cpp.o
/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/CompoundSystem.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/CompoundSystem.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/CompoundSystem.cpp.o -c /<<PKGBUILDDIR>>/src/CompoundSystem.cpp
/<<PKGBUILDDIR>>/./include/molmodel/internal/AtomSubsystem.h: At global scope:
/<<PKGBUILDDIR>>/./include/molmodel/internal/AtomSubsystem.h:180:23: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
180 | : public std::iterator<std::forward_iterator_tag, std::pair<AtomSubsystem::AtomIndex, AtomSubsystem::AtomIndex> >
| ^~~~~~~~
In file included from /usr/include/c++/13/bits/stl_algobase.h:65,
from /usr/include/c++/13/bits/specfun.h:43,
from /usr/include/c++/13/cmath:3699,
from /usr/include/simbody/SimTKcommon/internal/common.h:255,
from /usr/include/simbody/SimTKcommon/basics.h:38,
from /usr/include/simbody/SimTKcommon.h:32:
/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36,
from /usr/include/simbody/SimTKcommon.h:35,
from /usr/include/simbody/SimTKsimbody.h:43,
from /<<PKGBUILDDIR>>/src/Compound.cpp:32:
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(double)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1169 | approxCompleteEllipticIntegralsKE(double m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::approxCompleteEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1177 | approxCompleteEllipticIntegralsKE(float m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1186 | approxCompleteEllipticIntegralsKE(int m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::completeEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1257 | inline std::pair<float,float> completeEllipticIntegralsKE(float m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::completeEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1265 | inline std::pair<double,double> completeEllipticIntegralsKE(int m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1178:54: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1095 | static inline std::pair<T,T> approxCompleteEllipticIntegralsKE_T(T m) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1249:49: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1258:48: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36,
from /usr/include/simbody/SimTKcommon.h:35,
from /usr/include/simbody/SimTKsimbody.h:43,
from /<<PKGBUILDDIR>>/./include/molmodel/internal/CompoundSystem.h:4,
from /<<PKGBUILDDIR>>/src/CompoundSystem.cpp:1:
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(double)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1169 | approxCompleteEllipticIntegralsKE(double m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::approxCompleteEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1177 | approxCompleteEllipticIntegralsKE(float m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1186 | approxCompleteEllipticIntegralsKE(int m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::completeEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1257 | inline std::pair<float,float> completeEllipticIntegralsKE(float m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::completeEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1265 | inline std::pair<double,double> completeEllipticIntegralsKE(int m)
| ^
In file included from /<<PKGBUILDDIR>>/src/CompoundAtom.h:36,
from /<<PKGBUILDDIR>>/src/CompoundRep.h:42,
from /<<PKGBUILDDIR>>/src/Compound.cpp:45:
/<<PKGBUILDDIR>>/./include/molmodel/internal/AtomSubsystem.h: At global scope:
/<<PKGBUILDDIR>>/./include/molmodel/internal/AtomSubsystem.h:180:23: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
180 | : public std::iterator<std::forward_iterator_tag, std::pair<AtomSubsystem::AtomIndex, AtomSubsystem::AtomIndex> >
| ^~~~~~~~
In file included from /usr/include/c++/13/bits/stl_algobase.h:65,
from /usr/include/c++/13/bits/specfun.h:43,
from /usr/include/c++/13/cmath:3699,
from /usr/include/simbody/SimTKcommon/internal/common.h:255,
from /usr/include/simbody/SimTKcommon/basics.h:38,
from /usr/include/simbody/SimTKcommon.h:32:
/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/CompoundAtom.h:36,
from /<<PKGBUILDDIR>>/src/CompoundRep.h:42,
from /<<PKGBUILDDIR>>/src/CompoundSystem.cpp:3:
/<<PKGBUILDDIR>>/./include/molmodel/internal/AtomSubsystem.h: At global scope:
/<<PKGBUILDDIR>>/./include/molmodel/internal/AtomSubsystem.h:180:23: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
180 | : public std::iterator<std::forward_iterator_tag, std::pair<AtomSubsystem::AtomIndex, AtomSubsystem::AtomIndex> >
| ^~~~~~~~
In file included from /usr/include/c++/13/bits/stl_algobase.h:65,
from /usr/include/c++/13/bits/specfun.h:43,
from /usr/include/c++/13/cmath:3699,
from /usr/include/simbody/SimTKcommon/internal/common.h:255,
from /usr/include/simbody/SimTKcommon/basics.h:38,
from /usr/include/simbody/SimTKcommon.h:32:
/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /usr/include/c++/13/vector:72,
from /usr/include/simbody/SimTKcommon/internal/Array.h:39,
from /usr/include/simbody/SimTKcommon/basics.h:53:
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair<SimTK::Vec<3, double, 1>, SimTK::AtomSubsystem::AtomIndex>}; _Tp = std::pair<SimTK::Vec<3>, SimTK::AtomSubsystem::AtomIndex>; _Alloc = std::allocator<std::pair<SimTK::Vec<3>, SimTK::AtomSubsystem::AtomIndex> >]’:
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<std::pair<SimTK::Vec<3>, SimTK::AtomSubsystem::AtomIndex>, std::allocator<std::pair<SimTK::Vec<3>, SimTK::AtomSubsystem::AtomIndex> > >::iterator’ changed in GCC 7.1
445 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/memory:69,
from /usr/include/simbody/SimTKcommon/internal/ClonePtr.h:29,
from /usr/include/simbody/SimTKcommon/basics.h:44:
/usr/include/c++/13/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const SimTK::AtomSubsystem::Atom*, vector<SimTK::AtomSubsystem::Atom> >; _ForwardIterator = SimTK::AtomSubsystem::Atom*]’:
/usr/include/c++/13/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const SimTK::AtomSubsystem::Atom*, std::vector<SimTK::AtomSubsystem::Atom> >’ changed in GCC 7.1
113 | __do_uninit_copy(_InputIterator __first, _InputIterator __last,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const SimTK::AtomSubsystem::Atom*, std::vector<SimTK::AtomSubsystem::Atom> >’ changed in GCC 7.1
In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const SimTK::AtomSubsystem::Atom*, std::vector<SimTK::AtomSubsystem::Atom> >; _ForwardIterator = SimTK::AtomSubsystem::Atom*; bool _TrivialValueTypes = false]’,
inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const SimTK::AtomSubsystem::Atom*, vector<SimTK::AtomSubsystem::Atom> >; _ForwardIterator = SimTK::AtomSubsystem::Atom*]’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15,
inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const SimTK::AtomSubsystem::Atom*, vector<SimTK::AtomSubsystem::Atom> >; _ForwardIterator = SimTK::AtomSubsystem::Atom*; _Tp = SimTK::AtomSubsystem::Atom]’ at /usr/include/c++/13/bits/stl_uninitialized.h:373:37,
inlined from ‘std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = SimTK::AtomSubsystem::Atom; _Alloc = std::allocator<SimTK::AtomSubsystem::Atom>]’ at /usr/include/c++/13/bits/stl_vector.h:603:31,
inlined from ‘SimTK::AtomSubsystem::Impl::Impl(const SimTK::AtomSubsystem::Impl&)’ at /<<PKGBUILDDIR>>/src/AtomSubsystem.cpp:8:22:
/usr/include/c++/13/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const SimTK::AtomSubsystem::Atom*, std::vector<SimTK::AtomSubsystem::Atom> >’ changed in GCC 7.1
137 | { return std::__do_uninit_copy(__first, __last, __result); }
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<SimTK::Vec<3, double, 1>, SimTK::AtomSubsystem::AtomIndex>}; _Tp = std::pair<SimTK::Vec<3>, SimTK::AtomSubsystem::AtomIndex>; _Alloc = std::allocator<std::pair<SimTK::Vec<3>, SimTK::AtomSubsystem::AtomIndex> >]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair<SimTK::Vec<3>, SimTK::AtomSubsystem::AtomIndex>; _Alloc = std::allocator<std::pair<SimTK::Vec<3>, SimTK::AtomSubsystem::AtomIndex> >]’ at /usr/include/c++/13/bits/stl_vector.h:1296:21,
inlined from ‘void SimTK::VoxelHash<T>::insert(const T&, const SimTK::Vec3&) [with T = SimTK::AtomSubsystem::AtomIndex]’ at /<<PKGBUILDDIR>>/./include/molmodel/internal/VoxelHash.h:108:24,
inlined from ‘void SimTK::AtomSubsystem::PairIterator::populateVoxelHash(std::vector<SimTK::AtomSubsystem::AtomsByBody>::const_iterator)’ at /<<PKGBUILDDIR>>/src/AtomSubsystem.cpp:613:25:
/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<SimTK::Vec<3>, SimTK::AtomSubsystem::AtomIndex>*, std::vector<std::pair<SimTK::Vec<3>, SimTK::AtomSubsystem::AtomIndex>, std::allocator<std::pair<SimTK::Vec<3>, SimTK::AtomSubsystem::AtomIndex> > > >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1178:54: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1095 | static inline std::pair<T,T> approxCompleteEllipticIntegralsKE_T(T m) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1249:49: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1258:48: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {SimTK::AtomSubsystem::Atom}; _Tp = SimTK::AtomSubsystem::Atom; _Alloc = std::allocator<SimTK::AtomSubsystem::Atom>]’:
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<SimTK::AtomSubsystem::Atom>::iterator’ changed in GCC 7.1
445 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {SimTK::AtomSubsystem::Atom}; _Tp = SimTK::AtomSubsystem::Atom; _Alloc = std::allocator<SimTK::AtomSubsystem::Atom>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = SimTK::AtomSubsystem::Atom; _Alloc = std::allocator<SimTK::AtomSubsystem::Atom>]’ at /usr/include/c++/13/bits/stl_vector.h:1296:21,
inlined from ‘SimTK::AtomSubsystem::AtomIndex SimTK::AtomSubsystem::addAtom(mass_t)’ at /<<PKGBUILDDIR>>/src/AtomSubsystem.cpp:172:29:
/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<SimTK::AtomSubsystem::Atom*, std::vector<SimTK::AtomSubsystem::Atom> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1178:54: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1095 | static inline std::pair<T,T> approxCompleteEllipticIntegralsKE_T(T m) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1249:49: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1258:48: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
[ 21%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/DuMMForceFieldSubsystem.cpp.o
/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/DuMMForceFieldSubsystem.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/DuMMForceFieldSubsystem.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/DuMMForceFieldSubsystem.cpp.o -c /<<PKGBUILDDIR>>/src/DuMMForceFieldSubsystem.cpp
In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36,
from /usr/include/simbody/SimTKcommon.h:35,
from /<<PKGBUILDDIR>>/./include/molmodel/internal/common.h:40,
from /<<PKGBUILDDIR>>/src/DuMMForceFieldSubsystem.cpp:40:
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(double)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1169 | approxCompleteEllipticIntegralsKE(double m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::approxCompleteEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1177 | approxCompleteEllipticIntegralsKE(float m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1186 | approxCompleteEllipticIntegralsKE(int m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::completeEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1257 | inline std::pair<float,float> completeEllipticIntegralsKE(float m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::completeEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1265 | inline std::pair<double,double> completeEllipticIntegralsKE(int m)
| ^
In file included from /<<PKGBUILDDIR>>/src/gbsa/ObcParameters.h:28,
from /<<PKGBUILDDIR>>/src/DuMMForceFieldSubsystemRep.h:50,
from /<<PKGBUILDDIR>>/src/DuMMForceFieldSubsystem.cpp:43:
/<<PKGBUILDDIR>>/src/gbsa/SimTKOpenMMCommon.h: At global scope:
/<<PKGBUILDDIR>>/src/gbsa/SimTKOpenMMCommon.h:163:47: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
163 | class StringComparisonForMapPtr : public std::binary_function< std::string*, std::string*, bool > {
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/string:49,
from /usr/include/c++/13/bits/locale_classes.h:40,
from /usr/include/c++/13/bits/ios_base.h:41,
from /usr/include/c++/13/ios:44,
from /usr/include/c++/13/istream:40,
from /usr/include/c++/13/sstream:40,
from /usr/include/c++/13/complex:45,
from /usr/include/simbody/SimTKcommon/internal/common.h:257,
from /usr/include/simbody/SimTKcommon/basics.h:38,
from /usr/include/simbody/SimTKcommon.h:32:
/usr/include/c++/13/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gbsa/SimTKOpenMMCommon.h:172:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
172 | class StringComparisonForMap : public std::binary_function< const std::string&, const std::string&, bool > {
| ^~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1178:54: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1095 | static inline std::pair<T,T> approxCompleteEllipticIntegralsKE_T(T m) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1249:49: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1258:48: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
In file included from /usr/include/c++/13/set:62,
from /usr/include/simbody/simmath/internal/Contact.h:30,
from /usr/include/simbody/SimTKmath.h:46,
from /usr/include/simbody/SimTKsimbody.h:44:
/usr/include/c++/13/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const SimTK::Compound::AtomIndex&>, std::tuple<>}; _Key = SimTK::Compound::AtomIndex; _Val = std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding>; _KeyOfValue = std::_Select1st<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> >; _Compare = std::less<SimTK::Compound::AtomIndex>; _Alloc = std::allocator<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> >]’:
/usr/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree<SimTK::Compound::AtomIndex, std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding>, std::_Select1st<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> >, std::less<SimTK::Compound::AtomIndex>, std::allocator<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> > >::const_iterator’ changed in GCC 7.1
2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const SimTK::DuMM::ClusterIndex&>, std::tuple<>}; _Key = SimTK::DuMM::ClusterIndex; _Val = std::pair<const SimTK::DuMM::ClusterIndex, SimTK::RigidUnit>; _KeyOfValue = std::_Select1st<std::pair<const SimTK::DuMM::ClusterIndex, SimTK::RigidUnit> >; _Compare = std::less<SimTK::DuMM::ClusterIndex>; _Alloc = std::allocator<std::pair<const SimTK::DuMM::ClusterIndex, SimTK::RigidUnit> >]’:
/usr/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree<SimTK::DuMM::ClusterIndex, std::pair<const SimTK::DuMM::ClusterIndex, SimTK::RigidUnit>, std::_Select1st<std::pair<const SimTK::DuMM::ClusterIndex, SimTK::RigidUnit> >, std::less<SimTK::DuMM::ClusterIndex>, std::allocator<std::pair<const SimTK::DuMM::ClusterIndex, SimTK::RigidUnit> > >::const_iterator’ changed in GCC 7.1
In file included from /usr/include/c++/13/map:63,
from /usr/include/simbody/simmath/internal/CollisionDetectionAlgorithm.h:32,
from /usr/include/simbody/SimTKmath.h:48:
/usr/include/c++/13/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = SimTK::Compound::AtomIndex; _Tp = SimTK::AtomBonding; _Compare = std::less<SimTK::Compound::AtomIndex>; _Alloc = std::allocator<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> >]’:
/usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree<SimTK::Compound::AtomIndex, std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding>, std::_Select1st<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> >, std::less<SimTK::Compound::AtomIndex>, std::allocator<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> > >::const_iterator’ changed in GCC 7.1
513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
514 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
515 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = SimTK::Compound::AtomIndex; _Tp = SimTK::AtomBonding; _Compare = std::less<SimTK::Compound::AtomIndex>; _Alloc = std::allocator<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> >]’,
inlined from ‘void SimTK::CompoundSystem::modelOneCompound(CompoundIndex, SimTK::String)’ at /<<PKGBUILDDIR>>/src/CompoundSystem.cpp:165:20:
/usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree<SimTK::Compound::AtomIndex, std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding>, std::_Select1st<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> >, std::less<SimTK::Compound::AtomIndex>, std::allocator<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> > >::const_iterator’ changed in GCC 7.1
513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
514 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
515 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = SimTK::Compound::AtomIndex; _Tp = SimTK::AtomBonding; _Compare = std::less<SimTK::Compound::AtomIndex>; _Alloc = std::allocator<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> >]’,
inlined from ‘void SimTK::CompoundSystem::modelOneCompound(CompoundIndex, SimTK::String)’ at /<<PKGBUILDDIR>>/src/CompoundSystem.cpp:166:47:
/usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree<SimTK::Compound::AtomIndex, std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding>, std::_Select1st<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> >, std::less<SimTK::Compound::AtomIndex>, std::allocator<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> > >::const_iterator’ changed in GCC 7.1
513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
514 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
515 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = SimTK::Compound::AtomIndex; _Tp = SimTK::AtomBonding; _Compare = std::less<SimTK::Compound::AtomIndex>; _Alloc = std::allocator<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> >]’,
inlined from ‘void SimTK::CompoundSystem::modelOneCompound(CompoundIndex, SimTK::String)’ at /<<PKGBUILDDIR>>/src/CompoundSystem.cpp:204:59:
/usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree<SimTK::Compound::AtomIndex, std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding>, std::_Select1st<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> >, std::less<SimTK::Compound::AtomIndex>, std::allocator<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> > >::const_iterator’ changed in GCC 7.1
513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
514 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
515 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = SimTK::Compound::AtomIndex; _Tp = SimTK::AtomBonding; _Compare = std::less<SimTK::Compound::AtomIndex>; _Alloc = std::allocator<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> >]’,
inlined from ‘void SimTK::CompoundSystem::modelOneCompound(CompoundIndex, SimTK::String)’ at /<<PKGBUILDDIR>>/src/CompoundSystem.cpp:204:88:
/usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree<SimTK::Compound::AtomIndex, std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding>, std::_Select1st<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> >, std::less<SimTK::Compound::AtomIndex>, std::allocator<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> > >::const_iterator’ changed in GCC 7.1
513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
514 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
515 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = SimTK::DuMM::ClusterIndex; _Tp = SimTK::RigidUnit; _Compare = std::less<SimTK::DuMM::ClusterIndex>; _Alloc = std::allocator<std::pair<const SimTK::DuMM::ClusterIndex, SimTK::RigidUnit> >]’,
inlined from ‘void SimTK::CompoundSystem::modelOneCompound(CompoundIndex, SimTK::String)’ at /<<PKGBUILDDIR>>/src/CompoundSystem.cpp:239:29:
/usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree<SimTK::DuMM::ClusterIndex, std::pair<const SimTK::DuMM::ClusterIndex, SimTK::RigidUnit>, std::_Select1st<std::pair<const SimTK::DuMM::ClusterIndex, SimTK::RigidUnit> >, std::less<SimTK::DuMM::ClusterIndex>, std::allocator<std::pair<const SimTK::DuMM::ClusterIndex, SimTK::RigidUnit> > >::const_iterator’ changed in GCC 7.1
513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
514 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
515 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = SimTK::DuMM::ClusterIndex; _Tp = SimTK::RigidUnit; _Compare = std::less<SimTK::DuMM::ClusterIndex>; _Alloc = std::allocator<std::pair<const SimTK::DuMM::ClusterIndex, SimTK::RigidUnit> >]’,
inlined from ‘void SimTK::CompoundSystem::modelOneCompound(CompoundIndex, SimTK::String)’ at /<<PKGBUILDDIR>>/src/CompoundSystem.cpp:240:52:
/usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree<SimTK::DuMM::ClusterIndex, std::pair<const SimTK::DuMM::ClusterIndex, SimTK::RigidUnit>, std::_Select1st<std::pair<const SimTK::DuMM::ClusterIndex, SimTK::RigidUnit> >, std::less<SimTK::DuMM::ClusterIndex>, std::allocator<std::pair<const SimTK::DuMM::ClusterIndex, SimTK::RigidUnit> > >::const_iterator’ changed in GCC 7.1
513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
514 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
515 | std::tuple<>());
| ~~~~~~~~~~~~~~~
[ 25%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/DuMMForceFieldSubsystemRep.cpp.o
/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/DuMMForceFieldSubsystemRep.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/DuMMForceFieldSubsystemRep.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/DuMMForceFieldSubsystemRep.cpp.o -c /<<PKGBUILDDIR>>/src/DuMMForceFieldSubsystemRep.cpp
In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36,
from /usr/include/simbody/SimTKcommon.h:35,
from /<<PKGBUILDDIR>>/./include/molmodel/internal/common.h:40,
from /<<PKGBUILDDIR>>/src/DuMMForceFieldSubsystemRep.cpp:38:
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(double)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1169 | approxCompleteEllipticIntegralsKE(double m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::approxCompleteEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1177 | approxCompleteEllipticIntegralsKE(float m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1186 | approxCompleteEllipticIntegralsKE(int m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::completeEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1257 | inline std::pair<float,float> completeEllipticIntegralsKE(float m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::completeEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1265 | inline std::pair<double,double> completeEllipticIntegralsKE(int m)
| ^
[ 28%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/Element.cpp.o
/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/Element.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/Element.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/Element.cpp.o -c /<<PKGBUILDDIR>>/src/Element.cpp
In file included from /<<PKGBUILDDIR>>/src/gbsa/ObcParameters.h:28,
from /<<PKGBUILDDIR>>/src/DuMMForceFieldSubsystemRep.h:50,
from /<<PKGBUILDDIR>>/src/DuMMForceFieldSubsystemRep.cpp:40:
/<<PKGBUILDDIR>>/src/gbsa/SimTKOpenMMCommon.h: At global scope:
/<<PKGBUILDDIR>>/src/gbsa/SimTKOpenMMCommon.h:163:47: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
163 | class StringComparisonForMapPtr : public std::binary_function< std::string*, std::string*, bool > {
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/string:49,
from /usr/include/c++/13/bits/locale_classes.h:40,
from /usr/include/c++/13/bits/ios_base.h:41,
from /usr/include/c++/13/ios:44,
from /usr/include/c++/13/istream:40,
from /usr/include/c++/13/sstream:40,
from /usr/include/c++/13/complex:45,
from /usr/include/simbody/SimTKcommon/internal/common.h:257,
from /usr/include/simbody/SimTKcommon/basics.h:38,
from /usr/include/simbody/SimTKcommon.h:32:
/usr/include/c++/13/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gbsa/SimTKOpenMMCommon.h:172:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
172 | class StringComparisonForMap : public std::binary_function< const std::string&, const std::string&, bool > {
| ^~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36,
from /usr/include/simbody/SimTKcommon.h:35,
from /<<PKGBUILDDIR>>/./include/molmodel/internal/Element.h:35,
from /<<PKGBUILDDIR>>/src/Element.cpp:34:
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(double)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1169 | approxCompleteEllipticIntegralsKE(double m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::approxCompleteEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1177 | approxCompleteEllipticIntegralsKE(float m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1186 | approxCompleteEllipticIntegralsKE(int m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::completeEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1257 | inline std::pair<float,float> completeEllipticIntegralsKE(float m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::completeEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1265 | inline std::pair<double,double> completeEllipticIntegralsKE(int m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1178:54: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1095 | static inline std::pair<T,T> approxCompleteEllipticIntegralsKE_T(T m) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1249:49: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1258:48: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1178:54: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1095 | static inline std::pair<T,T> approxCompleteEllipticIntegralsKE_T(T m) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1249:49: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1258:48: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
In file included from /usr/include/c++/13/vector:72,
from /usr/include/simbody/SimTKcommon/internal/Array.h:39,
from /usr/include/simbody/SimTKcommon/basics.h:53:
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const gemmi::Atom&}; _Tp = gemmi::Atom; _Alloc = std::allocator<gemmi::Atom>]’:
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<gemmi::Atom>::iterator’ changed in GCC 7.1
445 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {SimTK::Compound::BondIndex&, SimTK::Compound::BondCenterIndex, SimTK::Compound::BondCenterIndex, const SimTK::Bond&}; _Tp = SimTK::BondInfo; _Alloc = std::allocator<SimTK::BondInfo>]’:
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<SimTK::BondInfo>::iterator’ changed in GCC 7.1
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const SimTK::Vec<3, double, 1>&}; _Tp = SimTK::Vec<3>; _Alloc = std::allocator<SimTK::Vec<3> >]’:
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<SimTK::Vec<3> >::iterator’ changed in GCC 7.1
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {SimTK::PdbAtomLocation}; _Tp = SimTK::PdbAtomLocation; _Alloc = std::allocator<SimTK::PdbAtomLocation>]’:
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<SimTK::PdbAtomLocation>::iterator’ changed in GCC 7.1
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {SimTK::PdbAtomLocation}; _Tp = SimTK::PdbAtomLocation; _Alloc = std::allocator<SimTK::PdbAtomLocation>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = SimTK::PdbAtomLocation; _Alloc = std::allocator<SimTK::PdbAtomLocation>]’ at /usr/include/c++/13/bits/stl_vector.h:1296:21,
inlined from ‘SimTK::PdbAtom& SimTK::PdbAtom::setLocation(SimTK::PdbAtomLocation&&)’ at /<<PKGBUILDDIR>>/./include/molmodel/internal/Pdb.h:185:32:
/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<SimTK::PdbAtomLocation*, std::vector<SimTK::PdbAtomLocation> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {SimTK::BondCenter}; _Tp = SimTK::BondCenter; _Alloc = std::allocator<SimTK::BondCenter>]’:
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<SimTK::BondCenter>::iterator’ changed in GCC 7.1
445 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {SimTK::BondCenter}; _Tp = SimTK::BondCenter; _Alloc = std::allocator<SimTK::BondCenter>]’:
/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<SimTK::BondCenter*, std::vector<SimTK::BondCenter> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 31%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/MolecularMechanicsSystem.cpp.o
/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/MolecularMechanicsSystem.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/MolecularMechanicsSystem.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/MolecularMechanicsSystem.cpp.o -c /<<PKGBUILDDIR>>/src/MolecularMechanicsSystem.cpp
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair<SimTK::UnitVec<double, 1>, SimTK::UnitVec<double, 1> >}; _Tp = std::pair<SimTK::UnitVec<double, 1>, SimTK::UnitVec<double, 1> >; _Alloc = std::allocator<std::pair<SimTK::UnitVec<double, 1>, SimTK::UnitVec<double, 1> > >]’:
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<std::pair<SimTK::UnitVec<double, 1>, SimTK::UnitVec<double, 1> > >::iterator’ changed in GCC 7.1
445 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<SimTK::UnitVec<double, 1>, SimTK::UnitVec<double, 1> >}; _Tp = std::pair<SimTK::UnitVec<double, 1>, SimTK::UnitVec<double, 1> >; _Alloc = std::allocator<std::pair<SimTK::UnitVec<double, 1>, SimTK::UnitVec<double, 1> > >]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair<SimTK::UnitVec<double, 1>, SimTK::UnitVec<double, 1> >; _Alloc = std::allocator<std::pair<SimTK::UnitVec<double, 1>, SimTK::UnitVec<double, 1> > >]’ at /usr/include/c++/13/bits/stl_vector.h:1296:21,
inlined from ‘SimTK::CompoundRep& SimTK::CompoundRep::matchDefaultAtomChirality(const SimTK::Compound::AtomTargetLocations&, double&, SimTK::Angle, bool)’ at /<<PKGBUILDDIR>>/src/CompoundRep.h:1144:38:
/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<SimTK::UnitVec<double, 1>, SimTK::UnitVec<double, 1> >*, std::vector<std::pair<SimTK::UnitVec<double, 1>, SimTK::UnitVec<double, 1> > > >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {SimTK::Vec3Pair}; _Tp = SimTK::Vec3Pair; _Alloc = std::allocator<SimTK::Vec3Pair>]’:
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<SimTK::Vec3Pair>::iterator’ changed in GCC 7.1
445 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {SimTK::Vec3Pair}; _Tp = SimTK::Vec3Pair; _Alloc = std::allocator<SimTK::Vec3Pair>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = SimTK::Vec3Pair; _Alloc = std::allocator<SimTK::Vec3Pair>]’ at /usr/include/c++/13/bits/stl_vector.h:1296:21,
inlined from ‘SimTK::TransformAndResidual SimTK::CompoundRep::getTransformAndResidual(const SimTK::Compound::AtomTargetLocations&) const’ at /<<PKGBUILDDIR>>/src/CompoundRep.h:1517:31:
/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<SimTK::Vec3Pair*, std::vector<SimTK::Vec3Pair> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {SimTK::BondInfo}; _Tp = SimTK::BondInfo; _Alloc = std::allocator<SimTK::BondInfo>]’:
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<SimTK::BondInfo>::iterator’ changed in GCC 7.1
445 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {SimTK::BondInfo}; _Tp = SimTK::BondInfo; _Alloc = std::allocator<SimTK::BondInfo>]’:
/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<SimTK::BondInfo*, std::vector<SimTK::BondInfo> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 34%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/PDBReader.cpp.o
/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/PDBReader.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/PDBReader.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/PDBReader.cpp.o -c /<<PKGBUILDDIR>>/src/PDBReader.cpp
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {SimTK::Vec<3, double, 1>}; _Tp = SimTK::Vec<3>; _Alloc = std::allocator<SimTK::Vec<3> >]’:
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<SimTK::Vec<3> >::iterator’ changed in GCC 7.1
445 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {SimTK::Vec<3, double, 1>}; _Tp = SimTK::Vec<3>; _Alloc = std::allocator<SimTK::Vec<3> >]’:
/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<SimTK::Vec<3>*, std::vector<SimTK::Vec<3> > >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36,
from /usr/include/simbody/SimTKcommon.h:35,
from /usr/include/simbody/SimTKsimbody.h:43,
from /<<PKGBUILDDIR>>/src/MolecularMechanicsSystem.cpp:37:
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(double)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1169 | approxCompleteEllipticIntegralsKE(double m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::approxCompleteEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1177 | approxCompleteEllipticIntegralsKE(float m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1186 | approxCompleteEllipticIntegralsKE(int m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::completeEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1257 | inline std::pair<float,float> completeEllipticIntegralsKE(float m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::completeEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1265 | inline std::pair<double,double> completeEllipticIntegralsKE(int m)
| ^
In file included from /usr/include/c++/13/vector:66:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = gemmi::Atom; _Alloc = std::allocator<gemmi::Atom>]’,
inlined from ‘void SimTK::CompoundRep::buildCif(const SimTK::State&, gemmi::Model*, gemmi::EntityType, int, const SimTK::Transform&) const’ at /<<PKGBUILDDIR>>/src/Compound.cpp:1058:55:
/usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Atom*, std::vector<gemmi::Atom> >’ changed in GCC 7.1
1289 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36,
from /usr/include/simbody/SimTKcommon.h:35,
from /<<PKGBUILDDIR>>/./include/molmodel/internal/common.h:40,
from /<<PKGBUILDDIR>>/./include/molmodel/internal/PDBReader.h:35,
from /<<PKGBUILDDIR>>/src/PDBReader.cpp:33:
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(double)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1169 | approxCompleteEllipticIntegralsKE(double m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::approxCompleteEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1177 | approxCompleteEllipticIntegralsKE(float m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1186 | approxCompleteEllipticIntegralsKE(int m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::completeEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1257 | inline std::pair<float,float> completeEllipticIntegralsKE(float m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::completeEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1265 | inline std::pair<double,double> completeEllipticIntegralsKE(int m)
| ^
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const SimTK::Compound::AtomIndex&, SimTK::CompoundAtom, bool}; _Tp = SimTK::AtomInfo; _Alloc = std::allocator<SimTK::AtomInfo>]’:
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<SimTK::AtomInfo>::iterator’ changed in GCC 7.1
445 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {SimTK::Compound::AtomIndex&, const SimTK::CompoundAtom&, bool&}; _Tp = SimTK::AtomInfo; _Alloc = std::allocator<SimTK::AtomInfo>]’:
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<SimTK::AtomInfo>::iterator’ changed in GCC 7.1
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {SimTK::Compound::AtomIndex&, const SimTK::CompoundAtom&, bool&}; _Tp = SimTK::AtomInfo; _Alloc = std::allocator<SimTK::AtomInfo>]’,
inlined from ‘SimTK::Compound::BondCenterIndex SimTK::CompoundRep::absorbSubcompound(SimTK::Compound::Name, const SimTK::Compound&, bool)’ at /<<PKGBUILDDIR>>/src/Compound.cpp:1213:30:
/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<SimTK::AtomInfo*, std::vector<SimTK::AtomInfo> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {SimTK::Compound::BondIndex&, SimTK::Compound::BondCenterIndex, SimTK::Compound::BondCenterIndex, const SimTK::Bond&}; _Tp = SimTK::BondInfo; _Alloc = std::allocator<SimTK::BondInfo>]’,
inlined from ‘SimTK::Compound::BondCenterIndex SimTK::CompoundRep::absorbSubcompound(SimTK::Compound::Name, const SimTK::Compound&, bool)’ at /<<PKGBUILDDIR>>/src/Compound.cpp:1275:30:
/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<SimTK::BondInfo*, std::vector<SimTK::BondInfo> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1178:54: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1095 | static inline std::pair<T,T> approxCompleteEllipticIntegralsKE_T(T m) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1249:49: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1258:48: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const SimTK::Compound::AtomIndex&, SimTK::CompoundAtom, bool}; _Tp = SimTK::AtomInfo; _Alloc = std::allocator<SimTK::AtomInfo>]’,
inlined from ‘SimTK::CompoundRep& SimTK::CompoundRep::setBaseAtom(const SimTK::Compound::AtomName&, const SimTK::Element*, const SimTK::Transform&)’ at /<<PKGBUILDDIR>>/src/Compound.cpp:274:26:
/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<SimTK::AtomInfo*, std::vector<SimTK::AtomInfo> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/vector:72,
from /usr/include/simbody/SimTKcommon/internal/Array.h:39,
from /usr/include/simbody/SimTKcommon/basics.h:53,
from /usr/include/simbody/SimTKcommon.h:32:
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair<const SimTK::MobilizedBody*, SimTK::Vec<2, SimTK::Vec<3, double, 1>, 1> >}; _Tp = std::pair<const SimTK::MobilizedBody*, SimTK::Vec<2, SimTK::Vec<3> > >; _Alloc = std::allocator<std::pair<const SimTK::MobilizedBody*, SimTK::Vec<2, SimTK::Vec<3> > > >]’:
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<std::pair<const SimTK::MobilizedBody*, SimTK::Vec<2, SimTK::Vec<3> > > >::iterator’ changed in GCC 7.1
445 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<const SimTK::MobilizedBody*, SimTK::Vec<2, SimTK::Vec<3, double, 1>, 1> >}; _Tp = std::pair<const SimTK::MobilizedBody*, SimTK::Vec<2, SimTK::Vec<3> > >; _Alloc = std::allocator<std::pair<const SimTK::MobilizedBody*, SimTK::Vec<2, SimTK::Vec<3> > > >]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair<const SimTK::MobilizedBody*, SimTK::Vec<2, SimTK::Vec<3> > >; _Alloc = std::allocator<std::pair<const SimTK::MobilizedBody*, SimTK::Vec<2, SimTK::Vec<3> > > >]’ at /usr/include/c++/13/bits/stl_vector.h:1296:21,
inlined from ‘void SimTK::MolecularMechanicsSystem::removeSystemRigidBodyMomentum(SimTK::State&, bool) const’ at /<<PKGBUILDDIR>>/src/MolecularMechanicsSystem.cpp:154:34:
/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<const SimTK::MobilizedBody*, SimTK::Vec<2, SimTK::Vec<3> > >*, std::vector<std::pair<const SimTK::MobilizedBody*, SimTK::Vec<2, SimTK::Vec<3> > > > >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair<const SimTK::MobilizedBody*, SimTK::Vec<3, double, 1> >}; _Tp = std::pair<const SimTK::MobilizedBody*, SimTK::Vec<3> >; _Alloc = std::allocator<std::pair<const SimTK::MobilizedBody*, SimTK::Vec<3> > >]’:
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<std::pair<const SimTK::MobilizedBody*, SimTK::Vec<3> > >::iterator’ changed in GCC 7.1
445 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<const SimTK::MobilizedBody*, SimTK::Vec<3, double, 1> >}; _Tp = std::pair<const SimTK::MobilizedBody*, SimTK::Vec<3> >; _Alloc = std::allocator<std::pair<const SimTK::MobilizedBody*, SimTK::Vec<3> > >]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair<const SimTK::MobilizedBody*, SimTK::Vec<3> >; _Alloc = std::allocator<std::pair<const SimTK::MobilizedBody*, SimTK::Vec<3> > >]’ at /usr/include/c++/13/bits/stl_vector.h:1296:21,
inlined from ‘void SimTK::MolecularMechanicsSystem::moveSystemMassCenter(SimTK::State&, const SimTK::Vec3&) const’ at /<<PKGBUILDDIR>>/src/MolecularMechanicsSystem.cpp:186:34:
/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<const SimTK::MobilizedBody*, SimTK::Vec<3> >*, std::vector<std::pair<const SimTK::MobilizedBody*, SimTK::Vec<3> > > >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 37%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/Pdb.cpp.o
/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/Pdb.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/Pdb.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/Pdb.cpp.o -c /<<PKGBUILDDIR>>/src/Pdb.cpp
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1178:54: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1095 | static inline std::pair<T,T> approxCompleteEllipticIntegralsKE_T(T m) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1249:49: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1258:48: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36,
from /usr/include/simbody/SimTKcommon.h:35,
from /usr/include/simbody/SimTKsimbody.h:43,
from /<<PKGBUILDDIR>>/./include/molmodel/internal/Pdb.h:4,
from /<<PKGBUILDDIR>>/src/Pdb.cpp:4:
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(double)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1169 | approxCompleteEllipticIntegralsKE(double m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::approxCompleteEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1177 | approxCompleteEllipticIntegralsKE(float m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1186 | approxCompleteEllipticIntegralsKE(int m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::completeEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1257 | inline std::pair<float,float> completeEllipticIntegralsKE(float m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::completeEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1265 | inline std::pair<double,double> completeEllipticIntegralsKE(int m)
| ^
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = SimTK::Vec<3>; _Alloc = std::allocator<SimTK::Vec<3> >]’,
inlined from ‘void SimTK::Protein::loadFromPdbChain(const SimTK::PdbChain&, SimTK::Real)’ at /<<PKGBUILDDIR>>/src/Compound.cpp:2999:42:
/usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<SimTK::Vec<3>*, std::vector<SimTK::Vec<3> > >’ changed in GCC 7.1
1289 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = SimTK::Vec<3>; _Alloc = std::allocator<SimTK::Vec<3> >]’,
inlined from ‘SimTK::Compound& SimTK::Compound::fitDefaultConfiguration(const AtomTargetLocations&, SimTK::Real, bool, SimTK::Real)’ at /<<PKGBUILDDIR>>/src/Compound.cpp:2203:42:
/usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<SimTK::Vec<3>*, std::vector<SimTK::Vec<3> > >’ changed in GCC 7.1
1289 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1178:54: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1095 | static inline std::pair<T,T> approxCompleteEllipticIntegralsKE_T(T m) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1249:49: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1258:48: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
[ 40%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/PeriodicVmdReporter.cpp.o
/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/PeriodicVmdReporter.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/PeriodicVmdReporter.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/PeriodicVmdReporter.cpp.o -c /<<PKGBUILDDIR>>/src/PeriodicVmdReporter.cpp
In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36,
from /usr/include/simbody/SimTKcommon.h:35,
from /usr/include/simbody/SimTKsimbody.h:43,
from /<<PKGBUILDDIR>>/./include/molmodel/internal/PeriodicVmdReporter.h:35,
from /<<PKGBUILDDIR>>/src/PeriodicVmdReporter.cpp:1:
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(double)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1169 | approxCompleteEllipticIntegralsKE(double m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::approxCompleteEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1177 | approxCompleteEllipticIntegralsKE(float m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1186 | approxCompleteEllipticIntegralsKE(int m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::completeEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1257 | inline std::pair<float,float> completeEllipticIntegralsKE(float m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::completeEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1265 | inline std::pair<double,double> completeEllipticIntegralsKE(int m)
| ^
[ 43%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/Representation.cpp.o
/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/Representation.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/Representation.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/Representation.cpp.o -c /<<PKGBUILDDIR>>/src/Representation.cpp
[ 46%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/RiboseMobilizer.cpp.o
/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/RiboseMobilizer.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/RiboseMobilizer.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/RiboseMobilizer.cpp.o -c /<<PKGBUILDDIR>>/src/RiboseMobilizer.cpp
In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36,
from /usr/include/simbody/SimTKcommon.h:35,
from /usr/include/simbody/SimTKsimbody.h:43,
from /<<PKGBUILDDIR>>/./include/molmodel/internal/RiboseMobilizer.h:35,
from /<<PKGBUILDDIR>>/src/RiboseMobilizer.cpp:32:
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(double)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1169 | approxCompleteEllipticIntegralsKE(double m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::approxCompleteEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1177 | approxCompleteEllipticIntegralsKE(float m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1186 | approxCompleteEllipticIntegralsKE(int m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::completeEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1257 | inline std::pair<float,float> completeEllipticIntegralsKE(float m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::completeEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1265 | inline std::pair<double,double> completeEllipticIntegralsKE(int m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1178:54: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1095 | static inline std::pair<T,T> approxCompleteEllipticIntegralsKE_T(T m) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1249:49: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1258:48: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
In file included from /usr/include/c++/13/vector:72,
from /usr/include/simbody/SimTKcommon/internal/Array.h:39,
from /usr/include/simbody/SimTKcommon/basics.h:53,
from /usr/include/simbody/SimTKcommon.h:32:
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {gemmi::FTransform&}; _Tp = gemmi::FTransform; _Alloc = std::allocator<gemmi::FTransform>]’:
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<gemmi::FTransform>::iterator’ changed in GCC 7.1
445 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {gemmi::Transform}; _Tp = gemmi::FTransform; _Alloc = std::allocator<gemmi::FTransform>]’:
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<gemmi::FTransform>::iterator’ changed in GCC 7.1
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gemmi::FTransform&}; _Tp = gemmi::FTransform; _Alloc = std::allocator<gemmi::FTransform>]’,
inlined from ‘void gemmi::UnitCell::add_ncs_images_to_cs_images(const std::vector<gemmi::NcsOp>&)’ at /usr/include/gemmi/unitcell.hpp:358:28:
/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::FTransform*, std::vector<gemmi::FTransform> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gemmi::Transform}; _Tp = gemmi::FTransform; _Alloc = std::allocator<gemmi::FTransform>]’,
inlined from ‘void gemmi::UnitCell::add_ncs_images_to_cs_images(const std::vector<gemmi::NcsOp>&)’ at /usr/include/gemmi/unitcell.hpp:360:30:
/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::FTransform*, std::vector<gemmi::FTransform> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1178:54: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1095 | static inline std::pair<T,T> approxCompleteEllipticIntegralsKE_T(T m) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1249:49: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1258:48: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::TlsGroup; _Alloc = std::allocator<gemmi::TlsGroup>]’:
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<gemmi::TlsGroup>::iterator’ changed in GCC 7.1
445 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::RefinementInfo; _Alloc = std::allocator<gemmi::RefinementInfo>]’:
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<gemmi::RefinementInfo>::iterator’ changed in GCC 7.1
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::BasicRefinementInfo; _Alloc = std::allocator<gemmi::BasicRefinementInfo>]’:
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<gemmi::BasicRefinementInfo>::iterator’ changed in GCC 7.1
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::CrystalInfo; _Alloc = std::allocator<gemmi::CrystalInfo>]’:
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<gemmi::CrystalInfo>::iterator’ changed in GCC 7.1
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::DiffractionInfo; _Alloc = std::allocator<gemmi::DiffractionInfo>]’:
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<gemmi::DiffractionInfo>::iterator’ changed in GCC 7.1
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::ExperimentInfo; _Alloc = std::allocator<gemmi::ExperimentInfo>]’:
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<gemmi::ExperimentInfo>::iterator’ changed in GCC 7.1
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::ReflectionsInfo; _Alloc = std::allocator<gemmi::ReflectionsInfo>]’:
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<gemmi::ReflectionsInfo>::iterator’ changed in GCC 7.1
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {gemmi::FTransform}; _Tp = gemmi::FTransform; _Alloc = std::allocator<gemmi::FTransform>]’:
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<gemmi::FTransform>::iterator’ changed in GCC 7.1
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gemmi::FTransform}; _Tp = gemmi::FTransform; _Alloc = std::allocator<gemmi::FTransform>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = gemmi::FTransform; _Alloc = std::allocator<gemmi::FTransform>]’ at /usr/include/c++/13/bits/stl_vector.h:1296:21,
inlined from ‘void gemmi::UnitCell::set_cell_images_from_spacegroup(const gemmi::SpaceGroup*)’ at /usr/include/gemmi/unitcell.hpp:348:23:
/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::FTransform*, std::vector<gemmi::FTransform> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {gemmi::Connection&}; _Tp = gemmi::Connection; _Alloc = std::allocator<gemmi::Connection>]’:
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<gemmi::Connection>::iterator’ changed in GCC 7.1
445 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const gemmi::CisPep&}; _Tp = gemmi::CisPep; _Alloc = std::allocator<gemmi::CisPep>]’:
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<gemmi::CisPep>::iterator’ changed in GCC 7.1
/usr/include/c++/13/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gemmi::Connection&}; _Tp = gemmi::Connection; _Alloc = std::allocator<gemmi::Connection>]’:
/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Connection*, std::vector<gemmi::Connection> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {gemmi::Atom&}; _Tp = gemmi::Atom; _Alloc = std::allocator<gemmi::Atom>]’:
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<gemmi::Atom>::iterator’ changed in GCC 7.1
445 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::Assembly::Operator; _Alloc = std::allocator<gemmi::Assembly::Operator>]’:
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<gemmi::Assembly::Operator>::iterator’ changed in GCC 7.1
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {Repr::Atom}; _Tp = Repr::Atom; _Alloc = std::allocator<Repr::Atom>]’:
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<Repr::Atom>::iterator’ changed in GCC 7.1
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {SimTK::Vec<3, double, 1>}; _Tp = SimTK::Vec<3>; _Alloc = std::allocator<SimTK::Vec<3> >]’:
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<SimTK::Vec<3> >::iterator’ changed in GCC 7.1
/usr/include/c++/13/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {SimTK::Vec<3, double, 1>}; _Tp = SimTK::Vec<3>; _Alloc = std::allocator<SimTK::Vec<3> >]’:
/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<SimTK::Vec<3>*, std::vector<SimTK::Vec<3> > >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 50%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/TinkerAmber99.cpp.o
/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/TinkerAmber99.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/TinkerAmber99.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/TinkerAmber99.cpp.o -c /<<PKGBUILDDIR>>/src/TinkerAmber99.cpp
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {}; _Tp = gemmi::CrystalInfo; _Alloc = std::allocator<gemmi::CrystalInfo>]’,
inlined from ‘void gemmi::pdb_impl::read_remark_200_230_240(const char*, gemmi::Metadata&, std::string*&)’ at /usr/include/gemmi/remarks.hpp:504:33:
/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::CrystalInfo*, std::vector<gemmi::CrystalInfo> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {}; _Tp = gemmi::DiffractionInfo; _Alloc = std::allocator<gemmi::DiffractionInfo>]’,
inlined from ‘void gemmi::pdb_impl::read_remark_200_230_240(const char*, gemmi::Metadata&, std::string*&)’ at /usr/include/gemmi/remarks.hpp:507:34:
/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::DiffractionInfo*, std::vector<gemmi::DiffractionInfo> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {}; _Tp = gemmi::ExperimentInfo; _Alloc = std::allocator<gemmi::ExperimentInfo>]’,
inlined from ‘void gemmi::pdb_impl::read_remark_200_230_240(const char*, gemmi::Metadata&, std::string*&)’ at /usr/include/gemmi/remarks.hpp:509:36:
/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::ExperimentInfo*, std::vector<gemmi::ExperimentInfo> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {}; _Tp = gemmi::ReflectionsInfo; _Alloc = std::allocator<gemmi::ReflectionsInfo>]’,
inlined from ‘void gemmi::pdb_impl::read_remark_200_230_240(const char*, gemmi::Metadata&, std::string*&)’ at /usr/include/gemmi/remarks.hpp:520:52:
/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::ReflectionsInfo*, std::vector<gemmi::ReflectionsInfo> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/vector:66:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = gemmi::CisPep; _Alloc = std::allocator<gemmi::CisPep>]’,
inlined from ‘void gemmi::pdb_impl::process_conn(gemmi::Structure&, const std::vector<std::__cxx11::basic_string<char> >&)’ at /usr/include/gemmi/pdb.hpp:212:27:
/usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::CisPep*, std::vector<gemmi::CisPep> >’ changed in GCC 7.1
1289 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[ 53%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/VanderWallSphere.cpp.o
/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/VanderWallSphere.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/VanderWallSphere.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/VanderWallSphere.cpp.o -c /<<PKGBUILDDIR>>/src/VanderWallSphere.cpp
In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36,
from /usr/include/simbody/SimTKcommon.h:35,
from /<<PKGBUILDDIR>>/./include/molmodel/internal/common.h:40,
from /<<PKGBUILDDIR>>/src/TinkerAmber99.cpp:2:
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(double)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1169 | approxCompleteEllipticIntegralsKE(double m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::approxCompleteEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1177 | approxCompleteEllipticIntegralsKE(float m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1186 | approxCompleteEllipticIntegralsKE(int m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::completeEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1257 | inline std::pair<float,float> completeEllipticIntegralsKE(float m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::completeEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1265 | inline std::pair<double,double> completeEllipticIntegralsKE(int m)
| ^
In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36,
from /usr/include/simbody/SimTKcommon.h:35,
from /usr/include/simbody/SimTKsimbody.h:43,
from /<<PKGBUILDDIR>>/./include/molmodel/internal/VanderWallSphere.h:4,
from /<<PKGBUILDDIR>>/src/VanderWallSphere.cpp:1:
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(double)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1169 | approxCompleteEllipticIntegralsKE(double m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::approxCompleteEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1177 | approxCompleteEllipticIntegralsKE(float m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1186 | approxCompleteEllipticIntegralsKE(int m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::completeEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1257 | inline std::pair<float,float> completeEllipticIntegralsKE(float m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::completeEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1265 | inline std::pair<double,double> completeEllipticIntegralsKE(int m)
| ^
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {gemmi::NcsOp}; _Tp = gemmi::NcsOp; _Alloc = std::allocator<gemmi::NcsOp>]’:
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<gemmi::NcsOp>::iterator’ changed in GCC 7.1
445 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >}; _Tp = gemmi::Assembly; _Alloc = std::allocator<gemmi::Assembly>]’:
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<gemmi::Assembly>::iterator’ changed in GCC 7.1
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const char*&}; _Tp = gemmi::RefinementInfo::Restr; _Alloc = std::allocator<gemmi::RefinementInfo::Restr>]’:
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<gemmi::RefinementInfo::Restr>::iterator’ changed in GCC 7.1
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const char*&}; _Tp = gemmi::RefinementInfo::Restr; _Alloc = std::allocator<gemmi::RefinementInfo::Restr>]’,
inlined from ‘void gemmi::pdb_impl::add_restraint_count_weight(gemmi::RefinementInfo&, const char*, const char*)’ at /usr/include/gemmi/remarks.hpp:162:36:
/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::RefinementInfo::Restr*, std::vector<gemmi::RefinementInfo::Restr> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1178:54: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1095 | static inline std::pair<T,T> approxCompleteEllipticIntegralsKE_T(T m) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1249:49: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1258:48: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&}; _Tp = gemmi::RefinementInfo::Restr; _Alloc = std::allocator<gemmi::RefinementInfo::Restr>]’:
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<gemmi::RefinementInfo::Restr>::iterator’ changed in GCC 7.1
445 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&}; _Tp = gemmi::RefinementInfo::Restr; _Alloc = std::allocator<gemmi::RefinementInfo::Restr>]’,
inlined from ‘T& gemmi::impl::find_or_add(std::vector<T2, std::allocator<_CharT> >&, const std::string&) [with T = gemmi::RefinementInfo::Restr]’ at /usr/include/gemmi/model.hpp:42:19,
inlined from ‘T& gemmi::impl::find_or_add(std::vector<T2, std::allocator<_CharT> >&, const std::string&) [with T = gemmi::RefinementInfo::Restr]’ at /usr/include/gemmi/model.hpp:39:4:
/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::RefinementInfo::Restr*, std::vector<gemmi::RefinementInfo::Restr> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {}; _Tp = gemmi::TlsGroup; _Alloc = std::allocator<gemmi::TlsGroup>]’,
inlined from ‘void gemmi::pdb_impl::read_remark3_line(const char*, gemmi::Metadata&, std::string*&)’ at /usr/include/gemmi/remarks.hpp:325:39:
/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::TlsGroup*, std::vector<gemmi::TlsGroup> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {}; _Tp = gemmi::RefinementInfo; _Alloc = std::allocator<gemmi::RefinementInfo>]’,
inlined from ‘void gemmi::pdb_impl::read_remark3_line(const char*, gemmi::Metadata&, std::string*&)’ at /usr/include/gemmi/remarks.hpp:381:35:
/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::RefinementInfo*, std::vector<gemmi::RefinementInfo> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {}; _Tp = gemmi::BasicRefinementInfo; _Alloc = std::allocator<gemmi::BasicRefinementInfo>]’,
inlined from ‘void gemmi::pdb_impl::read_remark3_line(const char*, gemmi::Metadata&, std::string*&)’ at /usr/include/gemmi/remarks.hpp:385:49:
/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::BasicRefinementInfo*, std::vector<gemmi::BasicRefinementInfo> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/vector:72,
from /usr/include/simbody/SimTKcommon/internal/Array.h:39,
from /usr/include/simbody/SimTKcommon/basics.h:53,
from /usr/include/simbody/SimTKcommon.h:32:
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {gemmi::FTransform&}; _Tp = gemmi::FTransform; _Alloc = std::allocator<gemmi::FTransform>]’:
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<gemmi::FTransform>::iterator’ changed in GCC 7.1
445 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {gemmi::Transform}; _Tp = gemmi::FTransform; _Alloc = std::allocator<gemmi::FTransform>]’:
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<gemmi::FTransform>::iterator’ changed in GCC 7.1
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gemmi::FTransform&}; _Tp = gemmi::FTransform; _Alloc = std::allocator<gemmi::FTransform>]’,
inlined from ‘void gemmi::UnitCell::add_ncs_images_to_cs_images(const std::vector<gemmi::NcsOp>&)’ at /usr/include/gemmi/unitcell.hpp:358:28:
/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::FTransform*, std::vector<gemmi::FTransform> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gemmi::Transform}; _Tp = gemmi::FTransform; _Alloc = std::allocator<gemmi::FTransform>]’,
inlined from ‘void gemmi::UnitCell::add_ncs_images_to_cs_images(const std::vector<gemmi::NcsOp>&)’ at /usr/include/gemmi/unitcell.hpp:360:30:
/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::FTransform*, std::vector<gemmi::FTransform> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gemmi::Atom&}; _Tp = gemmi::Atom; _Alloc = std::allocator<gemmi::Atom>]’,
inlined from ‘gemmi::Structure gemmi::pdb_impl::read_pdb_from_stream(Stream&&, const std::string&, const gemmi::PdbReadOptions&) [with Stream = gemmi::FileStream]’ at /usr/include/gemmi/pdb.hpp:321:31:
/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Atom*, std::vector<gemmi::Atom> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >}; _Tp = gemmi::Assembly; _Alloc = std::allocator<gemmi::Assembly>]’,
inlined from ‘gemmi::Structure gemmi::pdb_impl::read_pdb_from_stream(Stream&&, const std::string&, const gemmi::PdbReadOptions&) [with Stream = gemmi::FileStream]’ at /usr/include/gemmi/pdb.hpp:360:37:
/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Assembly*, std::vector<gemmi::Assembly> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {}; _Tp = gemmi::Assembly::Operator; _Alloc = std::allocator<gemmi::Assembly::Operator>]’,
inlined from ‘gemmi::Structure gemmi::pdb_impl::read_pdb_from_stream(Stream&&, const std::string&, const gemmi::PdbReadOptions&) [with Stream = gemmi::FileStream]’ at /usr/include/gemmi/pdb.hpp:373:33:
/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Assembly::Operator*, std::vector<gemmi::Assembly::Operator> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gemmi::NcsOp}; _Tp = gemmi::NcsOp; _Alloc = std::allocator<gemmi::NcsOp>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = gemmi::NcsOp; _Alloc = std::allocator<gemmi::NcsOp>]’ at /usr/include/c++/13/bits/stl_vector.h:1296:21,
inlined from ‘gemmi::Structure gemmi::pdb_impl::read_pdb_from_stream(Stream&&, const std::string&, const gemmi::PdbReadOptions&) [with Stream = gemmi::FileStream]’ at /usr/include/gemmi/pdb.hpp:538:27:
/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::NcsOp*, std::vector<gemmi::NcsOp> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::TlsGroup; _Alloc = std::allocator<gemmi::TlsGroup>]’:
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<gemmi::TlsGroup>::iterator’ changed in GCC 7.1
445 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::RefinementInfo; _Alloc = std::allocator<gemmi::RefinementInfo>]’:
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<gemmi::RefinementInfo>::iterator’ changed in GCC 7.1
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::BasicRefinementInfo; _Alloc = std::allocator<gemmi::BasicRefinementInfo>]’:
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<gemmi::BasicRefinementInfo>::iterator’ changed in GCC 7.1
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::CrystalInfo; _Alloc = std::allocator<gemmi::CrystalInfo>]’:
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<gemmi::CrystalInfo>::iterator’ changed in GCC 7.1
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::DiffractionInfo; _Alloc = std::allocator<gemmi::DiffractionInfo>]’:
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<gemmi::DiffractionInfo>::iterator’ changed in GCC 7.1
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::ExperimentInfo; _Alloc = std::allocator<gemmi::ExperimentInfo>]’:
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<gemmi::ExperimentInfo>::iterator’ changed in GCC 7.1
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1178:54: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1095 | static inline std::pair<T,T> approxCompleteEllipticIntegralsKE_T(T m) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1249:49: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1258:48: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::ReflectionsInfo; _Alloc = std::allocator<gemmi::ReflectionsInfo>]’:
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<gemmi::ReflectionsInfo>::iterator’ changed in GCC 7.1
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {gemmi::FTransform}; _Tp = gemmi::FTransform; _Alloc = std::allocator<gemmi::FTransform>]’:
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<gemmi::FTransform>::iterator’ changed in GCC 7.1
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gemmi::FTransform}; _Tp = gemmi::FTransform; _Alloc = std::allocator<gemmi::FTransform>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = gemmi::FTransform; _Alloc = std::allocator<gemmi::FTransform>]’ at /usr/include/c++/13/bits/stl_vector.h:1296:21,
inlined from ‘void gemmi::UnitCell::set_cell_images_from_spacegroup(const gemmi::SpaceGroup*)’ at /usr/include/gemmi/unitcell.hpp:348:23:
/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::FTransform*, std::vector<gemmi::FTransform> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {gemmi::Connection&}; _Tp = gemmi::Connection; _Alloc = std::allocator<gemmi::Connection>]’:
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<gemmi::Connection>::iterator’ changed in GCC 7.1
445 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const gemmi::CisPep&}; _Tp = gemmi::CisPep; _Alloc = std::allocator<gemmi::CisPep>]’:
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<gemmi::CisPep>::iterator’ changed in GCC 7.1
/usr/include/c++/13/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gemmi::Connection&}; _Tp = gemmi::Connection; _Alloc = std::allocator<gemmi::Connection>]’:
/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Connection*, std::vector<gemmi::Connection> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {gemmi::Atom&}; _Tp = gemmi::Atom; _Alloc = std::allocator<gemmi::Atom>]’:
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<gemmi::Atom>::iterator’ changed in GCC 7.1
445 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gemmi::Atom&}; _Tp = gemmi::Atom; _Alloc = std::allocator<gemmi::Atom>]’:
/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Atom*, std::vector<gemmi::Atom> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::Assembly::Operator; _Alloc = std::allocator<gemmi::Assembly::Operator>]’:
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<gemmi::Assembly::Operator>::iterator’ changed in GCC 7.1
445 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {}; _Tp = gemmi::Assembly::Operator; _Alloc = std::allocator<gemmi::Assembly::Operator>]’:
/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Assembly::Operator*, std::vector<gemmi::Assembly::Operator> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {SimTK::PdbAtomLocation}; _Tp = SimTK::PdbAtomLocation; _Alloc = std::allocator<SimTK::PdbAtomLocation>]’:
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<SimTK::PdbAtomLocation>::iterator’ changed in GCC 7.1
445 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {SimTK::PdbAtomLocation}; _Tp = SimTK::PdbAtomLocation; _Alloc = std::allocator<SimTK::PdbAtomLocation>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = SimTK::PdbAtomLocation; _Alloc = std::allocator<SimTK::PdbAtomLocation>]’ at /usr/include/c++/13/bits/stl_vector.h:1296:21,
inlined from ‘void SimTK::PdbAtom::parsePdbLine(const SimTK::String&)’ at /<<PKGBUILDDIR>>/src/Pdb.cpp:326:32:
/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<SimTK::PdbAtomLocation*, std::vector<SimTK::PdbAtomLocation> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 56%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/VelocityRescalingThermostat.cpp.o
/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/VelocityRescalingThermostat.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/VelocityRescalingThermostat.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/VelocityRescalingThermostat.cpp.o -c /<<PKGBUILDDIR>>/src/VelocityRescalingThermostat.cpp
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {}; _Tp = gemmi::CrystalInfo; _Alloc = std::allocator<gemmi::CrystalInfo>]’,
inlined from ‘void gemmi::pdb_impl::read_remark_200_230_240(const char*, gemmi::Metadata&, std::string*&)’ at /usr/include/gemmi/remarks.hpp:504:33:
/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::CrystalInfo*, std::vector<gemmi::CrystalInfo> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {}; _Tp = gemmi::DiffractionInfo; _Alloc = std::allocator<gemmi::DiffractionInfo>]’,
inlined from ‘void gemmi::pdb_impl::read_remark_200_230_240(const char*, gemmi::Metadata&, std::string*&)’ at /usr/include/gemmi/remarks.hpp:507:34:
/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::DiffractionInfo*, std::vector<gemmi::DiffractionInfo> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {}; _Tp = gemmi::ExperimentInfo; _Alloc = std::allocator<gemmi::ExperimentInfo>]’,
inlined from ‘void gemmi::pdb_impl::read_remark_200_230_240(const char*, gemmi::Metadata&, std::string*&)’ at /usr/include/gemmi/remarks.hpp:509:36:
/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::ExperimentInfo*, std::vector<gemmi::ExperimentInfo> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {}; _Tp = gemmi::ReflectionsInfo; _Alloc = std::allocator<gemmi::ReflectionsInfo>]’,
inlined from ‘void gemmi::pdb_impl::read_remark_200_230_240(const char*, gemmi::Metadata&, std::string*&)’ at /usr/include/gemmi/remarks.hpp:520:52:
/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::ReflectionsInfo*, std::vector<gemmi::ReflectionsInfo> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/vector:66:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = gemmi::CisPep; _Alloc = std::allocator<gemmi::CisPep>]’,
inlined from ‘void gemmi::pdb_impl::process_conn(gemmi::Structure&, const std::vector<std::__cxx11::basic_string<char> >&)’ at /usr/include/gemmi/pdb.hpp:212:27:
/usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::CisPep*, std::vector<gemmi::CisPep> >’ changed in GCC 7.1
1289 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36,
from /usr/include/simbody/SimTKcommon.h:35,
from /<<PKGBUILDDIR>>/src/VelocityRescalingThermostat.cpp:32:
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(double)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1169 | approxCompleteEllipticIntegralsKE(double m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::approxCompleteEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1177 | approxCompleteEllipticIntegralsKE(float m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1186 | approxCompleteEllipticIntegralsKE(int m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::completeEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1257 | inline std::pair<float,float> completeEllipticIntegralsKE(float m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::completeEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1265 | inline std::pair<double,double> completeEllipticIntegralsKE(int m)
| ^
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {gemmi::NcsOp}; _Tp = gemmi::NcsOp; _Alloc = std::allocator<gemmi::NcsOp>]’:
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<gemmi::NcsOp>::iterator’ changed in GCC 7.1
445 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gemmi::NcsOp}; _Tp = gemmi::NcsOp; _Alloc = std::allocator<gemmi::NcsOp>]’:
/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::NcsOp*, std::vector<gemmi::NcsOp> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >}; _Tp = gemmi::Assembly; _Alloc = std::allocator<gemmi::Assembly>]’:
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<gemmi::Assembly>::iterator’ changed in GCC 7.1
445 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {Repr::Atom}; _Tp = Repr::Atom; _Alloc = std::allocator<Repr::Atom>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = Repr::Atom; _Alloc = std::allocator<Repr::Atom>]’ at /usr/include/c++/13/bits/stl_vector.h:1296:21,
inlined from ‘SimTK::PDBReader::PDBReaderImpl::PDBReaderImpl(const std::string&, bool)’ at /<<PKGBUILDDIR>>/src/PDBReader.cpp:186:49:
/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Repr::Atom*, std::vector<Repr::Atom> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >}; _Tp = gemmi::Assembly; _Alloc = std::allocator<gemmi::Assembly>]’:
/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Assembly*, std::vector<gemmi::Assembly> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const char*&}; _Tp = gemmi::RefinementInfo::Restr; _Alloc = std::allocator<gemmi::RefinementInfo::Restr>]’:
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<gemmi::RefinementInfo::Restr>::iterator’ changed in GCC 7.1
445 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const char*&}; _Tp = gemmi::RefinementInfo::Restr; _Alloc = std::allocator<gemmi::RefinementInfo::Restr>]’,
inlined from ‘void gemmi::pdb_impl::add_restraint_count_weight(gemmi::RefinementInfo&, const char*, const char*)’ at /usr/include/gemmi/remarks.hpp:162:36:
/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::RefinementInfo::Restr*, std::vector<gemmi::RefinementInfo::Restr> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&}; _Tp = gemmi::RefinementInfo::Restr; _Alloc = std::allocator<gemmi::RefinementInfo::Restr>]’:
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<gemmi::RefinementInfo::Restr>::iterator’ changed in GCC 7.1
445 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&}; _Tp = gemmi::RefinementInfo::Restr; _Alloc = std::allocator<gemmi::RefinementInfo::Restr>]’,
inlined from ‘T& gemmi::impl::find_or_add(std::vector<T2, std::allocator<_CharT> >&, const std::string&) [with T = gemmi::RefinementInfo::Restr]’ at /usr/include/gemmi/model.hpp:42:19,
inlined from ‘T& gemmi::impl::find_or_add(std::vector<T2, std::allocator<_CharT> >&, const std::string&) [with T = gemmi::RefinementInfo::Restr]’ at /usr/include/gemmi/model.hpp:39:4:
/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::RefinementInfo::Restr*, std::vector<gemmi::RefinementInfo::Restr> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {}; _Tp = gemmi::TlsGroup; _Alloc = std::allocator<gemmi::TlsGroup>]’,
inlined from ‘void gemmi::pdb_impl::read_remark3_line(const char*, gemmi::Metadata&, std::string*&)’ at /usr/include/gemmi/remarks.hpp:325:39:
/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::TlsGroup*, std::vector<gemmi::TlsGroup> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {}; _Tp = gemmi::RefinementInfo; _Alloc = std::allocator<gemmi::RefinementInfo>]’,
inlined from ‘void gemmi::pdb_impl::read_remark3_line(const char*, gemmi::Metadata&, std::string*&)’ at /usr/include/gemmi/remarks.hpp:381:35:
/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::RefinementInfo*, std::vector<gemmi::RefinementInfo> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {}; _Tp = gemmi::BasicRefinementInfo; _Alloc = std::allocator<gemmi::BasicRefinementInfo>]’,
inlined from ‘void gemmi::pdb_impl::read_remark3_line(const char*, gemmi::Metadata&, std::string*&)’ at /usr/include/gemmi/remarks.hpp:385:49:
/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::BasicRefinementInfo*, std::vector<gemmi::BasicRefinementInfo> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1178:54: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1095 | static inline std::pair<T,T> approxCompleteEllipticIntegralsKE_T(T m) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1249:49: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1258:48: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
[ 59%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/VmdConnection.cpp.o
/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/VmdConnection.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/VmdConnection.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/VmdConnection.cpp.o -c /<<PKGBUILDDIR>>/src/VmdConnection.cpp
[ 62%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/gbsa/CpuImplicitSolvent.cpp.o
/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/gbsa/CpuImplicitSolvent.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/gbsa/CpuImplicitSolvent.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/gbsa/CpuImplicitSolvent.cpp.o -c /<<PKGBUILDDIR>>/src/gbsa/CpuImplicitSolvent.cpp
In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36,
from /usr/include/simbody/SimTKcommon.h:35,
from /<<PKGBUILDDIR>>/./include/molmodel/internal/common.h:40,
from /<<PKGBUILDDIR>>/./include/molmodel/internal/VmdConnection.h:4,
from /<<PKGBUILDDIR>>/src/VmdConnection.cpp:1:
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(double)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1169 | approxCompleteEllipticIntegralsKE(double m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::approxCompleteEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1177 | approxCompleteEllipticIntegralsKE(float m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1186 | approxCompleteEllipticIntegralsKE(int m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::completeEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1257 | inline std::pair<float,float> completeEllipticIntegralsKE(float m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::completeEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1265 | inline std::pair<double,double> completeEllipticIntegralsKE(int m)
| ^
In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36,
from /usr/include/simbody/SimTKcommon.h:35,
from /<<PKGBUILDDIR>>/src/gbsa/SimTKOpenMMCommon.h:28,
from /<<PKGBUILDDIR>>/src/gbsa/CpuImplicitSolvent.cpp:25:
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(double)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1169 | approxCompleteEllipticIntegralsKE(double m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::approxCompleteEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1177 | approxCompleteEllipticIntegralsKE(float m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1186 | approxCompleteEllipticIntegralsKE(int m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::completeEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1257 | inline std::pair<float,float> completeEllipticIntegralsKE(float m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::completeEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1265 | inline std::pair<double,double> completeEllipticIntegralsKE(int m)
| ^
/<<PKGBUILDDIR>>/src/gbsa/SimTKOpenMMCommon.h: At global scope:
/<<PKGBUILDDIR>>/src/gbsa/SimTKOpenMMCommon.h:163:47: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
163 | class StringComparisonForMapPtr : public std::binary_function< std::string*, std::string*, bool > {
| ^~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1178:54: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1095 | static inline std::pair<T,T> approxCompleteEllipticIntegralsKE_T(T m) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/string:49,
from /usr/include/c++/13/bits/locale_classes.h:40,
from /usr/include/c++/13/bits/ios_base.h:41,
from /usr/include/c++/13/ios:44,
from /usr/include/c++/13/istream:40,
from /usr/include/c++/13/sstream:40,
from /usr/include/c++/13/complex:45,
from /usr/include/simbody/SimTKcommon/internal/common.h:257,
from /usr/include/simbody/SimTKcommon/basics.h:38,
from /usr/include/simbody/SimTKcommon.h:32:
/usr/include/c++/13/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gbsa/SimTKOpenMMCommon.h:172:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
172 | class StringComparisonForMap : public std::binary_function< const std::string&, const std::string&, bool > {
| ^~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1249:49: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1258:48: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1178:54: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1095 | static inline std::pair<T,T> approxCompleteEllipticIntegralsKE_T(T m) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1249:49: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1258:48: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
[ 65%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/gbsa/CpuObc.cpp.o
/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/gbsa/CpuObc.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/gbsa/CpuObc.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/gbsa/CpuObc.cpp.o -c /<<PKGBUILDDIR>>/src/gbsa/CpuObc.cpp
[ 68%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/gbsa/ImplicitSolventParameters.cpp.o
/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/gbsa/ImplicitSolventParameters.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/gbsa/ImplicitSolventParameters.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/gbsa/ImplicitSolventParameters.cpp.o -c /<<PKGBUILDDIR>>/src/gbsa/ImplicitSolventParameters.cpp
In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36,
from /usr/include/simbody/SimTKcommon.h:35,
from /<<PKGBUILDDIR>>/src/gbsa/SimTKOpenMMCommon.h:28,
from /<<PKGBUILDDIR>>/src/gbsa/CpuObc.cpp:26:
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(double)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1169 | approxCompleteEllipticIntegralsKE(double m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::approxCompleteEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1177 | approxCompleteEllipticIntegralsKE(float m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1186 | approxCompleteEllipticIntegralsKE(int m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::completeEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1257 | inline std::pair<float,float> completeEllipticIntegralsKE(float m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::completeEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1265 | inline std::pair<double,double> completeEllipticIntegralsKE(int m)
| ^
In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36,
from /usr/include/simbody/SimTKcommon.h:35,
from /<<PKGBUILDDIR>>/src/gbsa/SimTKOpenMMCommon.h:28,
from /<<PKGBUILDDIR>>/src/gbsa/ImplicitSolventParameters.cpp:25:
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(double)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1169 | approxCompleteEllipticIntegralsKE(double m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::approxCompleteEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1177 | approxCompleteEllipticIntegralsKE(float m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1186 | approxCompleteEllipticIntegralsKE(int m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::completeEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1257 | inline std::pair<float,float> completeEllipticIntegralsKE(float m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::completeEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1265 | inline std::pair<double,double> completeEllipticIntegralsKE(int m)
| ^
[ 71%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/gbsa/ObcParameters.cpp.o
/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/gbsa/ObcParameters.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/gbsa/ObcParameters.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/gbsa/ObcParameters.cpp.o -c /<<PKGBUILDDIR>>/src/gbsa/ObcParameters.cpp
/<<PKGBUILDDIR>>/src/gbsa/SimTKOpenMMCommon.h: At global scope:
/<<PKGBUILDDIR>>/src/gbsa/SimTKOpenMMCommon.h:163:47: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
163 | class StringComparisonForMapPtr : public std::binary_function< std::string*, std::string*, bool > {
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/string:49,
from /usr/include/c++/13/bits/locale_classes.h:40,
from /usr/include/c++/13/bits/ios_base.h:41,
from /usr/include/c++/13/ios:44,
from /usr/include/c++/13/istream:40,
from /usr/include/c++/13/sstream:40,
from /usr/include/c++/13/complex:45,
from /usr/include/simbody/SimTKcommon/internal/common.h:257,
from /usr/include/simbody/SimTKcommon/basics.h:38,
from /usr/include/simbody/SimTKcommon.h:32:
/usr/include/c++/13/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gbsa/SimTKOpenMMCommon.h:172:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
172 | class StringComparisonForMap : public std::binary_function< const std::string&, const std::string&, bool > {
| ^~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1178:54: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1095 | static inline std::pair<T,T> approxCompleteEllipticIntegralsKE_T(T m) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1249:49: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1258:48: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
/<<PKGBUILDDIR>>/src/gbsa/SimTKOpenMMCommon.h: At global scope:
/<<PKGBUILDDIR>>/src/gbsa/SimTKOpenMMCommon.h:163:47: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
163 | class StringComparisonForMapPtr : public std::binary_function< std::string*, std::string*, bool > {
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/string:49,
from /usr/include/c++/13/bits/locale_classes.h:40,
from /usr/include/c++/13/bits/ios_base.h:41,
from /usr/include/c++/13/ios:44,
from /usr/include/c++/13/istream:40,
from /usr/include/c++/13/sstream:40,
from /usr/include/c++/13/complex:45,
from /usr/include/simbody/SimTKcommon/internal/common.h:257,
from /usr/include/simbody/SimTKcommon/basics.h:38,
from /usr/include/simbody/SimTKcommon.h:32:
/usr/include/c++/13/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gbsa/SimTKOpenMMCommon.h:172:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
172 | class StringComparisonForMap : public std::binary_function< const std::string&, const std::string&, bool > {
| ^~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1178:54: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1095 | static inline std::pair<T,T> approxCompleteEllipticIntegralsKE_T(T m) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1249:49: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1258:48: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36,
from /usr/include/simbody/SimTKcommon.h:35,
from /<<PKGBUILDDIR>>/src/gbsa/SimTKOpenMMCommon.h:28,
from /<<PKGBUILDDIR>>/src/gbsa/ObcParameters.h:28,
from /<<PKGBUILDDIR>>/src/gbsa/ObcParameters.cpp:26:
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(double)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1169 | approxCompleteEllipticIntegralsKE(double m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::approxCompleteEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1177 | approxCompleteEllipticIntegralsKE(float m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1186 | approxCompleteEllipticIntegralsKE(int m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::completeEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1257 | inline std::pair<float,float> completeEllipticIntegralsKE(float m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::completeEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1265 | inline std::pair<double,double> completeEllipticIntegralsKE(int m)
| ^
[ 75%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/gbsa/SimTKOpenMMCommon.cpp.o
/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/gbsa/SimTKOpenMMCommon.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/gbsa/SimTKOpenMMCommon.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/gbsa/SimTKOpenMMCommon.cpp.o -c /<<PKGBUILDDIR>>/src/gbsa/SimTKOpenMMCommon.cpp
[ 78%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/gbsa/SimTKOpenMMLog.cpp.o
/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/gbsa/SimTKOpenMMLog.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/gbsa/SimTKOpenMMLog.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/gbsa/SimTKOpenMMLog.cpp.o -c /<<PKGBUILDDIR>>/src/gbsa/SimTKOpenMMLog.cpp
/<<PKGBUILDDIR>>/src/gbsa/SimTKOpenMMCommon.h: At global scope:
/<<PKGBUILDDIR>>/src/gbsa/SimTKOpenMMCommon.h:163:47: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
163 | class StringComparisonForMapPtr : public std::binary_function< std::string*, std::string*, bool > {
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/string:49,
from /usr/include/c++/13/bits/locale_classes.h:40,
from /usr/include/c++/13/bits/ios_base.h:41,
from /usr/include/c++/13/ios:44,
from /usr/include/c++/13/istream:40,
from /usr/include/c++/13/sstream:40,
from /usr/include/c++/13/complex:45,
from /usr/include/simbody/SimTKcommon/internal/common.h:257,
from /usr/include/simbody/SimTKcommon/basics.h:38,
from /usr/include/simbody/SimTKcommon.h:32:
/usr/include/c++/13/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gbsa/SimTKOpenMMCommon.h:172:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
172 | class StringComparisonForMap : public std::binary_function< const std::string&, const std::string&, bool > {
| ^~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1178:54: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1095 | static inline std::pair<T,T> approxCompleteEllipticIntegralsKE_T(T m) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1249:49: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1258:48: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36,
from /usr/include/simbody/SimTKcommon.h:35,
from /<<PKGBUILDDIR>>/src/gbsa/SimTKOpenMMCommon.h:28,
from /<<PKGBUILDDIR>>/src/gbsa/SimTKOpenMMCommon.cpp:25:
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(double)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1169 | approxCompleteEllipticIntegralsKE(double m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::approxCompleteEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1177 | approxCompleteEllipticIntegralsKE(float m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1186 | approxCompleteEllipticIntegralsKE(int m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::completeEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1257 | inline std::pair<float,float> completeEllipticIntegralsKE(float m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::completeEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1265 | inline std::pair<double,double> completeEllipticIntegralsKE(int m)
| ^
In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36,
from /usr/include/simbody/SimTKcommon.h:35,
from /<<PKGBUILDDIR>>/src/gbsa/SimTKOpenMMCommon.h:28,
from /<<PKGBUILDDIR>>/src/gbsa/SimTKOpenMMLog.h:28,
from /<<PKGBUILDDIR>>/src/gbsa/SimTKOpenMMLog.cpp:25:
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(double)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1169 | approxCompleteEllipticIntegralsKE(double m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::approxCompleteEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1177 | approxCompleteEllipticIntegralsKE(float m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1186 | approxCompleteEllipticIntegralsKE(int m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::completeEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1257 | inline std::pair<float,float> completeEllipticIntegralsKE(float m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::completeEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1265 | inline std::pair<double,double> completeEllipticIntegralsKE(int m)
| ^
[ 81%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/gbsa/SimTKOpenMMUtilities.cpp.o
/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/gbsa/SimTKOpenMMUtilities.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/gbsa/SimTKOpenMMUtilities.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/gbsa/SimTKOpenMMUtilities.cpp.o -c /<<PKGBUILDDIR>>/src/gbsa/SimTKOpenMMUtilities.cpp
/<<PKGBUILDDIR>>/src/gbsa/SimTKOpenMMCommon.h: At global scope:
/<<PKGBUILDDIR>>/src/gbsa/SimTKOpenMMCommon.h:163:47: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
163 | class StringComparisonForMapPtr : public std::binary_function< std::string*, std::string*, bool > {
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/string:49,
from /usr/include/c++/13/bits/locale_classes.h:40,
from /usr/include/c++/13/bits/ios_base.h:41,
from /usr/include/c++/13/ios:44,
from /usr/include/c++/13/istream:40,
from /usr/include/c++/13/sstream:40,
from /usr/include/c++/13/complex:45,
from /usr/include/simbody/SimTKcommon/internal/common.h:257,
from /usr/include/simbody/SimTKcommon/basics.h:38,
from /usr/include/simbody/SimTKcommon.h:32:
/usr/include/c++/13/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gbsa/SimTKOpenMMCommon.h:172:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
172 | class StringComparisonForMap : public std::binary_function< const std::string&, const std::string&, bool > {
| ^~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1178:54: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1095 | static inline std::pair<T,T> approxCompleteEllipticIntegralsKE_T(T m) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1249:49: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1258:48: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
/<<PKGBUILDDIR>>/src/gbsa/SimTKOpenMMCommon.h: At global scope:
/<<PKGBUILDDIR>>/src/gbsa/SimTKOpenMMCommon.h:163:47: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
163 | class StringComparisonForMapPtr : public std::binary_function< std::string*, std::string*, bool > {
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/string:49,
from /usr/include/c++/13/bits/locale_classes.h:40,
from /usr/include/c++/13/bits/ios_base.h:41,
from /usr/include/c++/13/ios:44,
from /usr/include/c++/13/istream:40,
from /usr/include/c++/13/sstream:40,
from /usr/include/c++/13/complex:45,
from /usr/include/simbody/SimTKcommon/internal/common.h:257,
from /usr/include/simbody/SimTKcommon/basics.h:38,
from /usr/include/simbody/SimTKcommon.h:32:
/usr/include/c++/13/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gbsa/SimTKOpenMMCommon.h:172:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
172 | class StringComparisonForMap : public std::binary_function< const std::string&, const std::string&, bool > {
| ^~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1178:54: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1095 | static inline std::pair<T,T> approxCompleteEllipticIntegralsKE_T(T m) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1249:49: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1258:48: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36,
from /usr/include/simbody/SimTKcommon.h:35,
from /<<PKGBUILDDIR>>/src/gbsa/SimTKOpenMMCommon.h:28,
from /<<PKGBUILDDIR>>/src/gbsa/SimTKOpenMMUtilities.h:30,
from /<<PKGBUILDDIR>>/src/gbsa/SimTKOpenMMUtilities.cpp:27:
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(double)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1169 | approxCompleteEllipticIntegralsKE(double m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::approxCompleteEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1177 | approxCompleteEllipticIntegralsKE(float m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1186 | approxCompleteEllipticIntegralsKE(int m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::completeEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1257 | inline std::pair<float,float> completeEllipticIntegralsKE(float m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::completeEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1265 | inline std::pair<double,double> completeEllipticIntegralsKE(int m)
| ^
[ 84%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/gbsa/cpuObcInterface.cpp.o
/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/gbsa/cpuObcInterface.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/gbsa/cpuObcInterface.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/gbsa/cpuObcInterface.cpp.o -c /<<PKGBUILDDIR>>/src/gbsa/cpuObcInterface.cpp
[ 87%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/imd.cpp.o
/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/imd.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/imd.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/imd.cpp.o -c /<<PKGBUILDDIR>>/src/imd.cpp
[ 90%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/vmdsock.cpp.o
/usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/vmdsock.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/vmdsock.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/vmdsock.cpp.o -c /<<PKGBUILDDIR>>/src/vmdsock.cpp
/<<PKGBUILDDIR>>/src/gbsa/SimTKOpenMMCommon.h: At global scope:
/<<PKGBUILDDIR>>/src/gbsa/SimTKOpenMMCommon.h:163:47: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
163 | class StringComparisonForMapPtr : public std::binary_function< std::string*, std::string*, bool > {
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/string:49,
from /usr/include/c++/13/bits/locale_classes.h:40,
from /usr/include/c++/13/bits/ios_base.h:41,
from /usr/include/c++/13/ios:44,
from /usr/include/c++/13/istream:40,
from /usr/include/c++/13/sstream:40,
from /usr/include/c++/13/complex:45,
from /usr/include/simbody/SimTKcommon/internal/common.h:257,
from /usr/include/simbody/SimTKcommon/basics.h:38,
from /usr/include/simbody/SimTKcommon.h:32:
/usr/include/c++/13/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gbsa/SimTKOpenMMCommon.h:172:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
172 | class StringComparisonForMap : public std::binary_function< const std::string&, const std::string&, bool > {
| ^~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1178:54: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1095 | static inline std::pair<T,T> approxCompleteEllipticIntegralsKE_T(T m) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1249:49: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1258:48: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36,
from /usr/include/simbody/SimTKcommon.h:35,
from /<<PKGBUILDDIR>>/src/gbsa/cpuObcInterface.h:34,
from /<<PKGBUILDDIR>>/src/gbsa/cpuObcInterface.cpp:25:
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(double)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1169 | approxCompleteEllipticIntegralsKE(double m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::approxCompleteEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1177 | approxCompleteEllipticIntegralsKE(float m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1186 | approxCompleteEllipticIntegralsKE(int m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::completeEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1257 | inline std::pair<float,float> completeEllipticIntegralsKE(float m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::completeEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1265 | inline std::pair<double,double> completeEllipticIntegralsKE(int m)
| ^
In file included from /<<PKGBUILDDIR>>/src/gbsa/SimTKOpenMMLog.h:28,
from /<<PKGBUILDDIR>>/src/gbsa/cpuObcInterface.cpp:27:
/<<PKGBUILDDIR>>/src/gbsa/SimTKOpenMMCommon.h: At global scope:
/<<PKGBUILDDIR>>/src/gbsa/SimTKOpenMMCommon.h:163:47: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
163 | class StringComparisonForMapPtr : public std::binary_function< std::string*, std::string*, bool > {
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/string:49,
from /usr/include/c++/13/bits/locale_classes.h:40,
from /usr/include/c++/13/bits/ios_base.h:41,
from /usr/include/c++/13/ios:44,
from /usr/include/c++/13/istream:40,
from /usr/include/c++/13/sstream:40,
from /usr/include/c++/13/complex:45,
from /usr/include/simbody/SimTKcommon/internal/common.h:257,
from /usr/include/simbody/SimTKcommon/basics.h:38,
from /usr/include/simbody/SimTKcommon.h:32:
/usr/include/c++/13/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gbsa/SimTKOpenMMCommon.h:172:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
172 | class StringComparisonForMap : public std::binary_function< const std::string&, const std::string&, bool > {
| ^~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1178:54: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1095 | static inline std::pair<T,T> approxCompleteEllipticIntegralsKE_T(T m) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1249:49: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1258:48: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
[ 93%] Linking CXX shared library libSimTKmolmodel.so
/usr/bin/cmake -E cmake_link_script CMakeFiles/SimTKmolmodel.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,libSimTKmolmodel.so.3.1 -o libSimTKmolmodel.so.3.1 CMakeFiles/SimTKmolmodel.dir/src/About.cpp.o CMakeFiles/SimTKmolmodel.dir/src/AtomSubsystem.cpp.o CMakeFiles/SimTKmolmodel.dir/src/Biotype.cpp.o CMakeFiles/SimTKmolmodel.dir/src/BondGeometry.cpp.o CMakeFiles/SimTKmolmodel.dir/src/Compound.cpp.o CMakeFiles/SimTKmolmodel.dir/src/CompoundSystem.cpp.o CMakeFiles/SimTKmolmodel.dir/src/DuMMForceFieldSubsystem.cpp.o CMakeFiles/SimTKmolmodel.dir/src/DuMMForceFieldSubsystemRep.cpp.o CMakeFiles/SimTKmolmodel.dir/src/Element.cpp.o CMakeFiles/SimTKmolmodel.dir/src/MolecularMechanicsSystem.cpp.o CMakeFiles/SimTKmolmodel.dir/src/PDBReader.cpp.o CMakeFiles/SimTKmolmodel.dir/src/Pdb.cpp.o CMakeFiles/SimTKmolmodel.dir/src/PeriodicVmdReporter.cpp.o CMakeFiles/SimTKmolmodel.dir/src/Representation.cpp.o CMakeFiles/SimTKmolmodel.dir/src/RiboseMobilizer.cpp.o CMakeFiles/SimTKmolmodel.dir/src/TinkerAmber99.cpp.o CMakeFiles/SimTKmolmodel.dir/src/VanderWallSphere.cpp.o CMakeFiles/SimTKmolmodel.dir/src/VelocityRescalingThermostat.cpp.o CMakeFiles/SimTKmolmodel.dir/src/VmdConnection.cpp.o CMakeFiles/SimTKmolmodel.dir/src/gbsa/CpuImplicitSolvent.cpp.o CMakeFiles/SimTKmolmodel.dir/src/gbsa/CpuObc.cpp.o CMakeFiles/SimTKmolmodel.dir/src/gbsa/ImplicitSolventParameters.cpp.o CMakeFiles/SimTKmolmodel.dir/src/gbsa/ObcParameters.cpp.o CMakeFiles/SimTKmolmodel.dir/src/gbsa/SimTKOpenMMCommon.cpp.o CMakeFiles/SimTKmolmodel.dir/src/gbsa/SimTKOpenMMLog.cpp.o CMakeFiles/SimTKmolmodel.dir/src/gbsa/SimTKOpenMMUtilities.cpp.o CMakeFiles/SimTKmolmodel.dir/src/gbsa/cpuObcInterface.cpp.o CMakeFiles/SimTKmolmodel.dir/src/imd.cpp.o CMakeFiles/SimTKmolmodel.dir/src/vmdsock.cpp.o /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.7 /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.7 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.7 /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so -lpthread -lrt -ldl -lm
/usr/bin/cmake -E cmake_symlink_library libSimTKmolmodel.so.3.1 libSimTKmolmodel.so.3.1 libSimTKmolmodel.so
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 93%] Built target SimTKmolmodel
make -f OpenMMPlugin/CMakeFiles/OpenMMPlugin_shared.dir/build.make OpenMMPlugin/CMakeFiles/OpenMMPlugin_shared.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/OpenMMPlugin /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/OpenMMPlugin /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/OpenMMPlugin/CMakeFiles/OpenMMPlugin_shared.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f OpenMMPlugin/CMakeFiles/OpenMMPlugin_shared.dir/build.make OpenMMPlugin/CMakeFiles/OpenMMPlugin_shared.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 96%] Building CXX object OpenMMPlugin/CMakeFiles/OpenMMPlugin_shared.dir/OpenMMPlugin.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/OpenMMPlugin && /usr/bin/c++ -DOpenMMPlugin_shared_EXPORTS -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT OpenMMPlugin/CMakeFiles/OpenMMPlugin_shared.dir/OpenMMPlugin.cpp.o -MF CMakeFiles/OpenMMPlugin_shared.dir/OpenMMPlugin.cpp.o.d -o CMakeFiles/OpenMMPlugin_shared.dir/OpenMMPlugin.cpp.o -c /<<PKGBUILDDIR>>/OpenMMPlugin/OpenMMPlugin.cpp
In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36,
from /usr/include/simbody/SimTKcommon.h:35,
from /<<PKGBUILDDIR>>/OpenMMPlugin/OpenMMPlugin.cpp:41:
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(double)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1169 | approxCompleteEllipticIntegralsKE(double m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::approxCompleteEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1177 | approxCompleteEllipticIntegralsKE(float m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1186 | approxCompleteEllipticIntegralsKE(int m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::completeEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1257 | inline std::pair<float,float> completeEllipticIntegralsKE(float m)
| ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::completeEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1265 | inline std::pair<double,double> completeEllipticIntegralsKE(int m)
| ^
In file included from /<<PKGBUILDDIR>>/src/gbsa/ObcParameters.h:28,
from /<<PKGBUILDDIR>>/src/DuMMForceFieldSubsystemRep.h:50,
from /<<PKGBUILDDIR>>/OpenMMPlugin/OpenMMPlugin.cpp:43:
/<<PKGBUILDDIR>>/src/gbsa/SimTKOpenMMCommon.h: At global scope:
/<<PKGBUILDDIR>>/src/gbsa/SimTKOpenMMCommon.h:163:47: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
163 | class StringComparisonForMapPtr : public std::binary_function< std::string*, std::string*, bool > {
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/string:49,
from /usr/include/c++/13/bits/locale_classes.h:40,
from /usr/include/c++/13/bits/ios_base.h:41,
from /usr/include/c++/13/ios:44,
from /usr/include/c++/13/istream:40,
from /usr/include/c++/13/sstream:40,
from /usr/include/c++/13/complex:45,
from /usr/include/simbody/SimTKcommon/internal/common.h:257,
from /usr/include/simbody/SimTKcommon/basics.h:38,
from /usr/include/simbody/SimTKcommon.h:32:
/usr/include/c++/13/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/gbsa/SimTKOpenMMCommon.h:172:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
172 | class StringComparisonForMap : public std::binary_function< const std::string&, const std::string&, bool > {
| ^~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1178:54: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1095 | static inline std::pair<T,T> approxCompleteEllipticIntegralsKE_T(T m) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1249:49: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1258:48: required from here
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
In file included from /usr/include/c++/13/vector:72,
from /usr/include/simbody/SimTKcommon/internal/Array.h:39,
from /usr/include/simbody/SimTKcommon/basics.h:53:
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
445 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/vector:66:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘int OpenMM::System::addParticle(double)’ at /usr/include/openmm/System.h:89:25,
inlined from ‘virtual std::string OpenMMInterface::initializeOpenMM(bool, std::vector<std::__cxx11::basic_string<char> >&)’ at /<<PKGBUILDDIR>>/OpenMMPlugin/OpenMMPlugin.cpp:162:34:
/usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1289 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[100%] Linking CXX shared library libOpenMMPlugin.so
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/OpenMMPlugin && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenMMPlugin_shared.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,libOpenMMPlugin.so -o libOpenMMPlugin.so CMakeFiles/OpenMMPlugin_shared.dir/OpenMMPlugin.cpp.o -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf: ../libSimTKmolmodel.so.3.1 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.7 /usr/lib/arm-linux-gnueabihf/libOpenMM.so /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.7 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.7 /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so -lpthread -lrt -ldl -lm
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[100%] Built target OpenMMPlugin_shared
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles 0
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
dh_auto_test -a
create-stamp debian/debhelper-build-stamp
dh_prep -a
dh_auto_install -a
cd obj-arm-linux-gnueabihf && make -j4 install DESTDIR=/<<PKGBUILDDIR>>/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -S/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
make -f CMakeFiles/Makefile2 preinstall
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[2]: Nothing to be done for 'preinstall'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "None"
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libSimTKmolmodel.so.3.1
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libSimTKmolmodel.so
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/doc/api/Molmodel/html
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/doc/MolmodelAPI.html
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/Molmodel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/SimTKmolmodel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/molmodel/internal/AtomSubsystem.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/molmodel/internal/Biotype.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/molmodel/internal/Clonable.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/molmodel/internal/Compound.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/molmodel/internal/CompoundModeler.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/molmodel/internal/CompoundSystem.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/molmodel/internal/DNA.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/molmodel/internal/DuMMForceFieldSubsystem.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/molmodel/internal/Element.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/molmodel/internal/Exceptions.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/molmodel/internal/GrinPointer.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/molmodel/internal/Ions.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/molmodel/internal/Ligands.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/molmodel/internal/Linkage.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/molmodel/internal/MassCenterMotionRemover.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/molmodel/internal/MolecularMechanicsSystem.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/molmodel/internal/NA.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/molmodel/internal/NoseHooverThermostat.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/molmodel/internal/PDBReader.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/molmodel/internal/Pdb.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/molmodel/internal/PeriodicPdbWriter.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/molmodel/internal/PeriodicVmdReporter.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/molmodel/internal/Protein.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/molmodel/internal/RNA.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/molmodel/internal/RiboseMobilizer.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/molmodel/internal/Superpose.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/molmodel/internal/VanDerWaalsForce.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/molmodel/internal/VanderWallSphere.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/molmodel/internal/VelocityRescalingThermostat.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/molmodel/internal/VmdConnection.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/molmodel/internal/VoxelHash.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/molmodel/internal/Water.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/molmodel/internal/bondGeometry.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/molmodel/internal/common.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/molmodel/internal/units.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/doc/MolmodelUsersGuide.pdf
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/molmodel/MolmodelConfig.cmake
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/molmodel/MolmodelConfigVersion.cmake
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/molmodel/MolmodelTargets.cmake
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/molmodel/MolmodelTargets-none.cmake
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig/molmodel.pc
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/molmodel/plugins/libOpenMMPlugin.so
-- Set runtime path of "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/molmodel/plugins/libOpenMMPlugin.so" to ""
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
dh_install -a
dh_installdocs -a
dh_installchangelogs -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: symbol _ZN5gemmi16assign_subchainsERNS_9StructureEbb used by debian/libsimtkmolmodel3.1/usr/lib/arm-linux-gnueabihf/libSimTKmolmodel.so.3.1 found in none of the libraries
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libsimtkmolmodel3.1/usr/lib/arm-linux-gnueabihf/libSimTKmolmodel.so.3.1 found in none of the libraries
dpkg-shlibdeps: warning: symbol _ZN5gemmi25make_structure_from_blockERKNS_3cif5BlockE used by debian/libsimtkmolmodel3.1/usr/lib/arm-linux-gnueabihf/libSimTKmolmodel.so.3.1 found in none of the libraries
dpkg-shlibdeps: warning: symbol _ZN5gemmi15change_ccd_codeERNS_9StructureERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES9_ used by debian/libsimtkmolmodel3.1/usr/lib/arm-linux-gnueabihf/libSimTKmolmodel.so.3.1 found in none of the libraries
dpkg-shlibdeps: warning: symbol _ZN5gemmi19remove_entity_typesERNS_9StructureE used by debian/libsimtkmolmodel3.1/usr/lib/arm-linux-gnueabihf/libSimTKmolmodel.so.3.1 found in none of the libraries
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'libsimtkmolmodel-dev' in '../libsimtkmolmodel-dev_3.1.0-4_armhf.deb'.
dpkg-deb: building package 'libsimtkmolmodel3.1-dbgsym' in '../libsimtkmolmodel3.1-dbgsym_3.1.0-4_armhf.deb'.
dpkg-deb: building package 'libsimtkmolmodel-plugins-dbgsym' in '../libsimtkmolmodel-plugins-dbgsym_3.1.0-4_armhf.deb'.
dpkg-deb: building package 'libsimtkmolmodel3.1' in '../libsimtkmolmodel3.1_3.1.0-4_armhf.deb'.
dpkg-deb: building package 'libsimtkmolmodel-plugins' in '../libsimtkmolmodel-plugins_3.1.0-4_armhf.deb'.
dpkg-genbuildinfo --build=any -O../molmodel_3.1.0-4_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian pi5 test autobuilder <root@raspbian.org> -O../molmodel_3.1.0-4_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2023-12-01T11:38:52Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
molmodel_3.1.0-4_armhf.changes:
-------------------------------
Format: 1.8
Date: Thu, 20 Jul 2023 04:50:25 -0400
Source: molmodel
Binary: libsimtkmolmodel-dev libsimtkmolmodel-plugins libsimtkmolmodel-plugins-dbgsym libsimtkmolmodel3.1 libsimtkmolmodel3.1-dbgsym
Architecture: armhf
Version: 3.1.0-4
Distribution: trixie-staging
Urgency: medium
Maintainer: Raspbian pi5 test autobuilder <root@raspbian.org>
Changed-By: Andrius Merkys <merkys@debian.org>
Description:
libsimtkmolmodel-dev - C++ API for creating molecular models for SimTK (development file
libsimtkmolmodel-plugins - Plugins for C++ API for creating molecular models for SimTK
libsimtkmolmodel3.1 - C++ API for creating molecular models for SimTK
Closes: 1037780
Changes:
molmodel (3.1.0-4) unstable; urgency=medium
.
* Fix FTBFS with GCC-13 (Closes: #1037780)
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+------------------------------------------------------------------------------+
| Buildinfo |
+------------------------------------------------------------------------------+
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Source: molmodel
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e609f548bb2a61237905d7b76b15102ad7f02ddeabf939d006dce5a852807377 12991232 libsimtkmolmodel3.1-dbgsym_3.1.0-4_armhf.deb
6caea76b2858a59180b13c13407bccde9e91da5d2f89aa86b58dac61f732b573 582888 libsimtkmolmodel3.1_3.1.0-4_armhf.deb
Build-Origin: Raspbian
Build-Architecture: armhf
Build-Date: Fri, 01 Dec 2023 11:38:52 +0000
Build-Path: /<<PKGBUILDDIR>>
Installed-Build-Depends:
autoconf (= 2.71-3),
automake (= 1:1.16.5-1.3),
autopoint (= 0.21-13),
autotools-dev (= 20220109.1),
base-files (= 13+rpi1),
base-passwd (= 3.6.2),
bash (= 5.2.15-2),
binutils (= 2.41-6+rpi1),
binutils-arm-linux-gnueabihf (= 2.41-6+rpi1),
binutils-common (= 2.41-6+rpi1),
bsdextrautils (= 2.39.2-6),
bsdutils (= 1:2.39.2-6),
build-essential (= 12.9),
bzip2 (= 1.0.8-5+b2),
cmake (= 3.27.8-1),
cmake-data (= 3.27.8-1),
coreutils (= 9.1-1),
cpp (= 4:13.2.0-1+rpi1),
cpp-12 (= 12.3.0-10+rpi1),
cpp-13 (= 13.2.0-5+rpi1),
dash (= 0.5.12-6),
debconf (= 1.5.82),
debhelper (= 13.11.8),
debianutils (= 5.14),
dh-autoreconf (= 20),
dh-strip-nondeterminism (= 1.13.1-1),
diffutils (= 1:3.10-1),
dpkg (= 1.22.1+rpi1),
dpkg-dev (= 1.22.1+rpi1),
dwz (= 0.15-1),
file (= 1:5.45-2),
findutils (= 4.9.0-5),
freeglut3-dev (= 3.4.0-1),
g++ (= 4:13.2.0-1+rpi1),
g++-13 (= 13.2.0-5+rpi1),
gcc (= 4:13.2.0-1+rpi1),
gcc-12 (= 12.3.0-10+rpi1),
gcc-12-base (= 12.3.0-10+rpi1),
gcc-13 (= 13.2.0-5+rpi1),
gcc-13-base (= 13.2.0-5+rpi1),
gemmi-dev (= 0.6.3+ds-1),
gettext (= 0.21-13),
gettext-base (= 0.21-13),
grep (= 3.11-3),
groff-base (= 1.23.0-3),
gzip (= 1.12-1),
hostname (= 3.23+nmu1),
init-system-helpers (= 1.65.2),
intltool-debian (= 0.35.0+20060710.6),
libacl1 (= 2.3.1-3),
libarchive-zip-perl (= 1.68-1),
libarchive13 (= 3.7.2-1),
libasan8 (= 13.2.0-5+rpi1),
libatomic1 (= 13.2.0-5+rpi1),
libattr1 (= 1:2.5.1-4),
libaudit-common (= 1:3.1.1-1),
libaudit1 (= 1:3.1.1-1),
libbinutils (= 2.41-6+rpi1),
libblkid1 (= 2.39.2-6),
libbrotli1 (= 1.1.0-2),
libbsd0 (= 0.11.7-4),
libbz2-1.0 (= 1.0.8-5+b2),
libc-bin (= 2.37-12+rpi2),
libc-dev-bin (= 2.37-12+rpi2),
libc6 (= 2.37-12+rpi2),
libc6-dev (= 2.37-12+rpi2),
libcap-ng0 (= 0.8.3-1+b1),
libcap2 (= 1:2.66-4),
libcc1-0 (= 13.2.0-5+rpi1),
libcom-err2 (= 1.47.0-2),
libcrypt-dev (= 1:4.4.36-2),
libcrypt1 (= 1:4.4.36-2),
libctf-nobfd0 (= 2.41-6+rpi1),
libctf0 (= 2.41-6+rpi1),
libcurl4 (= 8.4.0-2+rpi1),
libdb5.3 (= 5.3.28+dfsg2-2),
libdebconfclient0 (= 0.271),
libdebhelper-perl (= 13.11.8),
libdpkg-perl (= 1.22.1+rpi1),
libdrm-amdgpu1 (= 2.4.117-1+rpi1),
libdrm-common (= 2.4.117-1+rpi1),
libdrm-nouveau2 (= 2.4.117-1+rpi1),
libdrm-radeon1 (= 2.4.117-1+rpi1),
libdrm2 (= 2.4.117-1+rpi1),
libedit2 (= 3.1-20230828-1),
libegl-dev (= 1.7.0-1),
libegl-mesa0 (= 23.1.7-1+rpi1),
libegl1 (= 1.7.0-1),
libelf1 (= 0.188-2.1+rpi1),
libexpat1 (= 2.5.0-2),
libffi8 (= 3.4.4-1),
libfile-stripnondeterminism-perl (= 1.13.1-1),
libgbm1 (= 23.1.7-1+rpi1),
libgcc-12-dev (= 12.3.0-10+rpi1),
libgcc-13-dev (= 13.2.0-5+rpi1),
libgcc-s1 (= 13.2.0-5+rpi1),
libgcrypt20 (= 1.10.2-3),
libgdbm-compat4 (= 1.23-3),
libgdbm6 (= 1.23-3),
libgfortran5 (= 13.2.0-5+rpi1),
libgl-dev (= 1.7.0-1),
libgl1 (= 1.7.0-1),
libgl1-mesa-dev (= 23.1.7-1+rpi1),
libgl1-mesa-dri (= 23.1.7-1+rpi1),
libglapi-mesa (= 23.1.7-1+rpi1),
libgles-dev (= 1.7.0-1),
libgles1 (= 1.7.0-1),
libgles2 (= 1.7.0-1),
libglu1-mesa (= 9.0.2-1.1),
libglu1-mesa-dev (= 9.0.2-1.1),
libglut-dev (= 3.4.0-1),
libglut3.12 (= 3.4.0-1),
libglvnd-core-dev (= 1.7.0-1),
libglvnd-dev (= 1.7.0-1),
libglvnd0 (= 1.7.0-1),
libglx-dev (= 1.7.0-1),
libglx-mesa0 (= 23.1.7-1+rpi1),
libglx0 (= 1.7.0-1),
libgmp10 (= 2:6.3.0+dfsg-2),
libgnutls30 (= 3.8.1-4),
libgomp1 (= 13.2.0-5+rpi1),
libgpg-error0 (= 1.47-2),
libgssapi-krb5-2 (= 1.20.1-4),
libhogweed6 (= 3.9.1-2),
libice-dev (= 2:1.0.10-1),
libice6 (= 2:1.0.10-1),
libicu72 (= 72.1-4),
libidn2-0 (= 2.3.4-1),
libisl23 (= 0.26-3),
libjansson4 (= 2.14-2),
libjsoncpp25 (= 1.9.5-6),
libk5crypto3 (= 1.20.1-4),
libkeyutils1 (= 1.6.3-2),
libkrb5-3 (= 1.20.1-4),
libkrb5support0 (= 1.20.1-4),
liblapack-dev (= 3.11.0-2),
liblapack3 (= 3.11.0-2),
libldap-2.5-0 (= 2.5.13+dfsg-5+rpi1),
libllvm15 (= 1:15.0.7-10+rpi1),
liblz4-1 (= 1.9.4-1+rpi1+b1),
liblzma5 (= 5.4.4-0.1),
libmagic-mgc (= 1:5.45-2),
libmagic1 (= 1:5.45-2),
libmd0 (= 1.1.0-1),
libmmdb2-0 (= 2.0.22-1),
libmmdb2-dev (= 2.0.22-1),
libmount1 (= 2.39.2-6),
libmpc3 (= 1.3.1-1),
libmpfr6 (= 4.2.1-1),
libncursesw6 (= 6.4+20231016-1),
libnettle8 (= 3.9.1-2),
libnghttp2-14 (= 1.58.0-1),
libnsl-dev (= 1.3.0-2),
libnsl2 (= 1.3.0-2),
libopenblas-pthread-dev (= 0.3.24+ds-1+rpi1),
libopenblas0-pthread (= 0.3.24+ds-1+rpi1),
libopengl-dev (= 1.7.0-1),
libopengl0 (= 1.7.0-1),
libopenmm-dev (= 8.0.0+dfsg-6),
libopenmm8.0 (= 8.0.0+dfsg-6),
libp11-kit0 (= 0.25.0-5),
libpam-modules (= 1.5.2-9.1),
libpam-modules-bin (= 1.5.2-9.1),
libpam-runtime (= 1.5.2-9.1),
libpam0g (= 1.5.2-9.1),
libpcre2-8-0 (= 10.42-4),
libperl5.36 (= 5.36.0-9),
libpipeline1 (= 1.5.7-1),
libproc2-0 (= 2:4.0.4-2),
libpsl5 (= 0.21.2-1+b1),
libpthread-stubs0-dev (= 0.4-1),
librhash0 (= 1.4.3-3),
librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2),
libsasl2-2 (= 2.1.28+dfsg1-3),
libsasl2-modules-db (= 2.1.28+dfsg1-3),
libseccomp2 (= 2.5.4-1+rpi1+b1),
libselinux1 (= 3.5-1),
libsensors-config (= 1:3.6.0-8),
libsensors5 (= 1:3.6.0-8),
libsframe1 (= 2.41-6+rpi1),
libsimbody-dev (= 3.7+dfsg-3),
libsimbody3.7 (= 3.7+dfsg-3),
libsm-dev (= 2:1.2.3-1),
libsm6 (= 2:1.2.3-1),
libsmartcols1 (= 2.39.2-6),
libssh2-1 (= 1.11.0-2),
libssl3 (= 3.0.11-1),
libstdc++-13-dev (= 13.2.0-5+rpi1),
libstdc++6 (= 13.2.0-5+rpi1),
libsub-override-perl (= 0.09-4),
libsystemd0 (= 254.5-1+rpi1),
libtasn1-6 (= 4.19.0-3),
libtinfo6 (= 6.4+20231016-1),
libtirpc-common (= 1.3.3+ds-1),
libtirpc-dev (= 1.3.3+ds-1),
libtirpc3 (= 1.3.3+ds-1),
libtool (= 2.4.7-7),
libubsan1 (= 13.2.0-5+rpi1),
libuchardet0 (= 0.0.7-1),
libudev1 (= 254.5-1+rpi1),
libunistring5 (= 1.1-2),
libuuid1 (= 2.39.2-6),
libuv1 (= 1.46.0-2+rpi1),
libwayland-client0 (= 1.22.0-2.1),
libwayland-server0 (= 1.22.0-2.1),
libx11-6 (= 2:1.8.7-1),
libx11-data (= 2:1.8.7-1),
libx11-dev (= 2:1.8.7-1),
libx11-xcb1 (= 2:1.8.7-1),
libxau-dev (= 1:1.0.9-1),
libxau6 (= 1:1.0.9-1),
libxcb-dri2-0 (= 1.15-1),
libxcb-dri3-0 (= 1.15-1),
libxcb-glx0 (= 1.15-1),
libxcb-present0 (= 1.15-1),
libxcb-randr0 (= 1.15-1),
libxcb-shm0 (= 1.15-1),
libxcb-sync1 (= 1.15-1),
libxcb-xfixes0 (= 1.15-1),
libxcb1 (= 1.15-1),
libxcb1-dev (= 1.15-1),
libxdmcp-dev (= 1:1.1.2-3),
libxdmcp6 (= 1:1.1.2-3),
libxext-dev (= 2:1.3.4-1),
libxext6 (= 2:1.3.4-1),
libxfixes-dev (= 1:6.0.0-2),
libxfixes3 (= 1:6.0.0-2),
libxi-dev (= 2:1.8-1),
libxi6 (= 2:1.8-1),
libxml2 (= 2.9.14+dfsg-1.3),
libxmu-dev (= 2:1.1.3-3),
libxmu-headers (= 2:1.1.3-3),
libxmu6 (= 2:1.1.3-3),
libxshmfence1 (= 1.3-1),
libxt-dev (= 1:1.2.1-1.1),
libxt6 (= 1:1.2.1-1.1),
libxxf86vm1 (= 1:1.1.4-1+b2),
libz3-4 (= 4.8.12-3.1),
libzstd1 (= 1.5.5+dfsg2-2),
linux-libc-dev (= 6.5.6-1+rpi1),
login (= 1:4.13+dfsg1-3),
lsb-base (= 11.6+rpi1),
m4 (= 1.4.19-4),
make (= 4.3-4.1),
man-db (= 2.12.0-1),
mawk (= 1.3.4.20230808-1),
ncurses-base (= 6.4+20231016-1),
ncurses-bin (= 6.4+20231016-1),
patch (= 2.7.6-7),
perl (= 5.36.0-9),
perl-base (= 5.36.0-9),
perl-modules-5.36 (= 5.36.0-9),
po-debconf (= 1.0.21+nmu1),
procps (= 2:4.0.4-2),
rpcsvc-proto (= 1.4.3-1),
sed (= 4.9-1),
sensible-utils (= 0.0.20),
sysvinit-utils (= 3.08-3),
tao-pegtl-dev (= 3.2.7-1),
tar (= 1.34+dfsg-1.2),
usr-is-merged (= 37),
util-linux (= 2.39.2-6),
x11-common (= 1:7.7+23),
x11proto-dev (= 2023.2-1),
xorg-sgml-doctools (= 1:1.11-1.1),
xtrans-dev (= 1.4.0-1),
xz-utils (= 5.4.4-0.1),
zlib1g (= 1:1.2.13.dfsg-3),
zlib1g-dev (= 1:1.2.13.dfsg-3)
Environment:
DEB_BUILD_OPTIONS="parallel=4"
LANG="en_GB.UTF-8"
LC_ALL="C.UTF-8"
LC_COLLATE="C.UTF-8"
SOURCE_DATE_EPOCH="1689843025"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
libsimtkmolmodel-dev_3.1.0-4_armhf.deb
--------------------------------------
new Debian package, version 2.0.
size 1863264 bytes: control archive=2296 bytes.
1156 bytes, 25 lines control
4041 bytes, 46 lines md5sums
Package: libsimtkmolmodel-dev
Source: molmodel
Version: 3.1.0-4
Architecture: armhf
Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
Installed-Size: 2283
Depends: libsimtkmolmodel3.1 (= 3.1.0-4)
Section: libdevel
Priority: optional
Multi-Arch: same
Homepage: https://simtk.org/projects/molmodel
Description: C++ API for creating molecular models for SimTK (development files)
Provides C++ API for creating molecular models whose dynamics can be simulated
using the SimTK Simbody library. Molmodel is a programmer's toolkit for
building reduced-coordinate, yet still all-atom, models of large biopolymers
such as proteins, RNA, and DNA. One can control the allowed mobility. By
default, Molmodel builds torsion-coordinate models in which bond stretch and
bend angles are rigid while bond torsion angles are mobile. But one is able
to rigidify or free any subsets of the atoms, such as the rigid benzene ring.
.
Molmodel is a C++ API for biochemist-friendly molecular modeling that extends
the Simbody API to simplify construction of high-performance articulated models
of molecules.
.
This package contains development files.
drwxr-xr-x root/root 0 2023-07-20 08:50 ./
drwxr-xr-x root/root 0 2023-07-20 08:50 ./usr/
drwxr-xr-x root/root 0 2023-07-20 08:50 ./usr/include/
drwxr-xr-x root/root 0 2023-07-20 08:50 ./usr/include/molmodel/
-rw-r--r-- root/root 3055 2022-11-29 09:21 ./usr/include/molmodel/Molmodel.h
-rw-r--r-- root/root 4277 2022-11-29 09:21 ./usr/include/molmodel/SimTKmolmodel.h
drwxr-xr-x root/root 0 2023-07-20 08:50 ./usr/include/molmodel/molmodel/
drwxr-xr-x root/root 0 2023-07-20 08:50 ./usr/include/molmodel/molmodel/internal/
-rw-r--r-- root/root 7528 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/AtomSubsystem.h
-rw-r--r-- root/root 7496 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/Biotype.h
-rw-r--r-- root/root 3009 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/Clonable.h
-rw-r--r-- root/root 86359 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/Compound.h
-rw-r--r-- root/root 7005 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/CompoundModeler.h
-rw-r--r-- root/root 6082 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/CompoundSystem.h
-rw-r--r-- root/root 22366 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/DNA.h
-rw-r--r-- root/root 70215 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/DuMMForceFieldSubsystem.h
-rw-r--r-- root/root 19995 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/Element.h
-rw-r--r-- root/root 363 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/Exceptions.h
-rw-r--r-- root/root 6143 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/GrinPointer.h
-rw-r--r-- root/root 15223 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/Ions.h
-rw-r--r-- root/root 16871 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/Ligands.h
-rw-r--r-- root/root 780 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/Linkage.h
-rw-r--r-- root/root 11934 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/MassCenterMotionRemover.h
-rw-r--r-- root/root 9510 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/MolecularMechanicsSystem.h
-rw-r--r-- root/root 13907 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/NA.h
-rw-r--r-- root/root 3377 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/NoseHooverThermostat.h
-rw-r--r-- root/root 4459 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/PDBReader.h
-rw-r--r-- root/root 19573 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/Pdb.h
-rw-r--r-- root/root 4301 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/PeriodicPdbWriter.h
-rw-r--r-- root/root 3549 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/PeriodicVmdReporter.h
-rw-r--r-- root/root 51009 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/Protein.h
-rw-r--r-- root/root 38117 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/RNA.h
-rw-r--r-- root/root 5122 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/RiboseMobilizer.h
-rw-r--r-- root/root 8762 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/Superpose.h
-rw-r--r-- root/root 13560 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/VanDerWaalsForce.h
-rw-r--r-- root/root 477 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/VanderWallSphere.h
-rw-r--r-- root/root 11619 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/VelocityRescalingThermostat.h
-rw-r--r-- root/root 935 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/VmdConnection.h
-rw-r--r-- root/root 4845 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/VoxelHash.h
-rw-r--r-- root/root 2851 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/Water.h
-rw-r--r-- root/root 3664 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/bondGeometry.h
-rw-r--r-- root/root 4253 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/common.h
-rw-r--r-- root/root 3429 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/units.h
drwxr-xr-x root/root 0 2023-07-20 08:50 ./usr/lib/
drwxr-xr-x root/root 0 2023-07-20 08:50 ./usr/lib/arm-linux-gnueabihf/
drwxr-xr-x root/root 0 2023-07-20 08:50 ./usr/lib/arm-linux-gnueabihf/cmake/
drwxr-xr-x root/root 0 2023-07-20 08:50 ./usr/lib/arm-linux-gnueabihf/cmake/molmodel/
-rw-r--r-- root/root 3070 2023-07-20 08:50 ./usr/lib/arm-linux-gnueabihf/cmake/molmodel/MolmodelConfig.cmake
-rw-r--r-- root/root 2759 2023-07-20 08:50 ./usr/lib/arm-linux-gnueabihf/cmake/molmodel/MolmodelConfigVersion.cmake
-rw-r--r-- root/root 1622 2023-07-20 08:50 ./usr/lib/arm-linux-gnueabihf/cmake/molmodel/MolmodelTargets-none.cmake
-rw-r--r-- root/root 4367 2023-07-20 08:50 ./usr/lib/arm-linux-gnueabihf/cmake/molmodel/MolmodelTargets.cmake
lrwxrwxrwx root/root 0 2023-07-20 08:50 ./usr/lib/arm-linux-gnueabihf/libSimTKmolmodel.so -> libSimTKmolmodel.so.3.1
drwxr-xr-x root/root 0 2023-07-20 08:50 ./usr/lib/arm-linux-gnueabihf/pkgconfig/
-rw-r--r-- root/root 251 2023-07-20 08:50 ./usr/lib/arm-linux-gnueabihf/pkgconfig/molmodel.pc
drwxr-xr-x root/root 0 2023-07-20 08:50 ./usr/share/
drwxr-xr-x root/root 0 2023-07-20 08:50 ./usr/share/doc/
drwxr-xr-x root/root 0 2023-07-20 08:50 ./usr/share/doc/libsimtkmolmodel-dev/
-rw-r--r-- root/root 817 2023-07-20 08:50 ./usr/share/doc/libsimtkmolmodel-dev/changelog.Debian.gz
-rw-r--r-- root/root 1452 2023-07-20 08:50 ./usr/share/doc/libsimtkmolmodel-dev/copyright
drwxr-xr-x root/root 0 2023-07-20 08:50 ./usr/share/doc/libsimtkmolmodel-dev/doc/
-rw-r--r-- root/root 241 2022-11-29 09:21 ./usr/share/doc/libsimtkmolmodel-dev/doc/MolmodelAPI.html
-rw-r--r-- root/root 1787506 2022-11-29 09:21 ./usr/share/doc/libsimtkmolmodel-dev/doc/MolmodelUsersGuide.pdf.gz
libsimtkmolmodel-plugins-dbgsym_3.1.0-4_armhf.deb
-------------------------------------------------
new Debian package, version 2.0.
size 565300 bytes: control archive=544 bytes.
404 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: libsimtkmolmodel-plugins-dbgsym
Source: molmodel
Version: 3.1.0-4
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
Installed-Size: 576
Depends: libsimtkmolmodel-plugins (= 3.1.0-4)
Section: debug
Priority: optional
Description: debug symbols for libsimtkmolmodel-plugins
Build-Ids: 0cc7d886a283da6ae891b4c0875bf8dc8004a24c
drwxr-xr-x root/root 0 2023-07-20 08:50 ./
drwxr-xr-x root/root 0 2023-07-20 08:50 ./usr/
drwxr-xr-x root/root 0 2023-07-20 08:50 ./usr/lib/
drwxr-xr-x root/root 0 2023-07-20 08:50 ./usr/lib/debug/
drwxr-xr-x root/root 0 2023-07-20 08:50 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2023-07-20 08:50 ./usr/lib/debug/.build-id/0c/
-rw-r--r-- root/root 579344 2023-07-20 08:50 ./usr/lib/debug/.build-id/0c/c7d886a283da6ae891b4c0875bf8dc8004a24c.debug
drwxr-xr-x root/root 0 2023-07-20 08:50 ./usr/share/
drwxr-xr-x root/root 0 2023-07-20 08:50 ./usr/share/doc/
lrwxrwxrwx root/root 0 2023-07-20 08:50 ./usr/share/doc/libsimtkmolmodel-plugins-dbgsym -> libsimtkmolmodel-plugins
libsimtkmolmodel-plugins_3.1.0-4_armhf.deb
------------------------------------------
new Debian package, version 2.0.
size 16132 bytes: control archive=1084 bytes.
1244 bytes, 24 lines control
274 bytes, 3 lines md5sums
Package: libsimtkmolmodel-plugins
Source: molmodel
Version: 3.1.0-4
Architecture: armhf
Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
Installed-Size: 51
Depends: libc6 (>= 2.4), libgcc-s1 (>= 3.5), libopenmm8.0 (>= 8.0.0+dfsg), libsimbody3.7 (>= 3.7+dfsg), libsimtkmolmodel3.1 (>= 3.1.0), libstdc++6 (>= 13.1)
Section: libs
Priority: optional
Homepage: https://simtk.org/projects/molmodel
Description: Plugins for C++ API for creating molecular models for SimTK
Provides C++ API for creating molecular models whose dynamics can be simulated
using the SimTK Simbody library. Molmodel is a programmer's toolkit for
building reduced-coordinate, yet still all-atom, models of large biopolymers
such as proteins, RNA, and DNA. One can control the allowed mobility. By
default, Molmodel builds torsion-coordinate models in which bond stretch and
bend angles are rigid while bond torsion angles are mobile. But one is able
to rigidify or free any subsets of the atoms, such as the rigid benzene ring.
.
Molmodel is a C++ API for biochemist-friendly molecular modeling that extends
the Simbody API to simplify construction of high-performance articulated models
of molecules.
.
This package provides Molmodel plugins.
drwxr-xr-x root/root 0 2023-07-20 08:50 ./
drwxr-xr-x root/root 0 2023-07-20 08:50 ./usr/
drwxr-xr-x root/root 0 2023-07-20 08:50 ./usr/lib/
drwxr-xr-x root/root 0 2023-07-20 08:50 ./usr/lib/arm-linux-gnueabihf/
drwxr-xr-x root/root 0 2023-07-20 08:50 ./usr/lib/arm-linux-gnueabihf/molmodel/
drwxr-xr-x root/root 0 2023-07-20 08:50 ./usr/lib/arm-linux-gnueabihf/molmodel/plugins/
-rw-r--r-- root/root 38644 2023-07-20 08:50 ./usr/lib/arm-linux-gnueabihf/molmodel/plugins/libOpenMMPlugin.so
drwxr-xr-x root/root 0 2023-07-20 08:50 ./usr/share/
drwxr-xr-x root/root 0 2023-07-20 08:50 ./usr/share/doc/
drwxr-xr-x root/root 0 2023-07-20 08:50 ./usr/share/doc/libsimtkmolmodel-plugins/
-rw-r--r-- root/root 817 2023-07-20 08:50 ./usr/share/doc/libsimtkmolmodel-plugins/changelog.Debian.gz
-rw-r--r-- root/root 1452 2023-07-20 08:50 ./usr/share/doc/libsimtkmolmodel-plugins/copyright
libsimtkmolmodel3.1-dbgsym_3.1.0-4_armhf.deb
--------------------------------------------
new Debian package, version 2.0.
size 12991232 bytes: control archive=556 bytes.
408 bytes, 13 lines control
106 bytes, 1 lines md5sums
Package: libsimtkmolmodel3.1-dbgsym
Source: molmodel
Version: 3.1.0-4
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
Installed-Size: 13202
Depends: libsimtkmolmodel3.1 (= 3.1.0-4)
Section: debug
Priority: optional
Multi-Arch: same
Description: debug symbols for libsimtkmolmodel3.1
Build-Ids: 7bd9fe4a99fd2dbc83777d6c67a6e581dd50067a
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drwxr-xr-x root/root 0 2023-07-20 08:50 ./usr/share/
drwxr-xr-x root/root 0 2023-07-20 08:50 ./usr/share/doc/
lrwxrwxrwx root/root 0 2023-07-20 08:50 ./usr/share/doc/libsimtkmolmodel3.1-dbgsym -> libsimtkmolmodel3.1
libsimtkmolmodel3.1_3.1.0-4_armhf.deb
-------------------------------------
new Debian package, version 2.0.
size 582888 bytes: control archive=1160 bytes.
1162 bytes, 23 lines control
252 bytes, 3 lines md5sums
52 bytes, 1 lines shlibs
68 bytes, 2 lines triggers
Package: libsimtkmolmodel3.1
Source: molmodel
Version: 3.1.0-4
Architecture: armhf
Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
Installed-Size: 2083
Depends: libc6 (>= 2.33), libgcc-s1 (>= 3.5), libsimbody3.7 (>= 3.7+dfsg), libstdc++6 (>= 13.1), zlib1g (>= 1:1.2.6)
Section: libs
Priority: optional
Multi-Arch: same
Homepage: https://simtk.org/projects/molmodel
Description: C++ API for creating molecular models for SimTK
Provides C++ API for creating molecular models whose dynamics can be simulated
using the SimTK Simbody library. Molmodel is a programmer's toolkit for
building reduced-coordinate, yet still all-atom, models of large biopolymers
such as proteins, RNA, and DNA. One can control the allowed mobility. By
default, Molmodel builds torsion-coordinate models in which bond stretch and
bend angles are rigid while bond torsion angles are mobile. But one is able
to rigidify or free any subsets of the atoms, such as the rigid benzene ring.
.
Molmodel is a C++ API for biochemist-friendly molecular modeling that extends
the Simbody API to simplify construction of high-performance articulated models
of molecules.
drwxr-xr-x root/root 0 2023-07-20 08:50 ./
drwxr-xr-x root/root 0 2023-07-20 08:50 ./usr/
drwxr-xr-x root/root 0 2023-07-20 08:50 ./usr/lib/
drwxr-xr-x root/root 0 2023-07-20 08:50 ./usr/lib/arm-linux-gnueabihf/
-rw-r--r-- root/root 2118944 2023-07-20 08:50 ./usr/lib/arm-linux-gnueabihf/libSimTKmolmodel.so.3.1
drwxr-xr-x root/root 0 2023-07-20 08:50 ./usr/share/
drwxr-xr-x root/root 0 2023-07-20 08:50 ./usr/share/doc/
drwxr-xr-x root/root 0 2023-07-20 08:50 ./usr/share/doc/libsimtkmolmodel3.1/
-rw-r--r-- root/root 817 2023-07-20 08:50 ./usr/share/doc/libsimtkmolmodel3.1/changelog.Debian.gz
-rw-r--r-- root/root 1452 2023-07-20 08:50 ./usr/share/doc/libsimtkmolmodel3.1/copyright
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build Type: any
Build-Space: 240196
Build-Time: 127
Distribution: trixie-staging
Host Architecture: armhf
Install-Time: 54
Job: molmodel_3.1.0-4
Machine Architecture: arm64
Package: molmodel
Package-Time: 191
Source-Version: 3.1.0-4
Space: 240196
Status: successful
Version: 3.1.0-4
--------------------------------------------------------------------------------
Finished at 2023-12-01T11:38:52Z
Build needed 00:03:11, 240196k disk space