molmodel →
3.0.113.gd05a5b6-1 →
armhf → 2021-12-02 07:38:19
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on testwandboard
+==============================================================================+
| molmodel 3.0.113.gd05a5b6-1 (armhf) Thu, 02 Dec 2021 06:27:03 +0000 |
+==============================================================================+
Package: molmodel
Version: 3.0.113.gd05a5b6-1
Source Version: 3.0.113.gd05a5b6-1
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-524eaedc-f995-4619-b75f-72bf8ead792a' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bookworm-staging/main Sources [12.5 MB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf Packages [13.5 MB]
Fetched 26.0 MB in 30s (875 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'molmodel' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/debichem-team/molmodel.git
Please use:
git clone https://salsa.debian.org/debichem-team/molmodel.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 8559 kB of source archives.
Get:1 http://172.17.0.1/private bookworm-staging/main molmodel 3.0.113.gd05a5b6-1 (dsc) [2182 B]
Get:2 http://172.17.0.1/private bookworm-staging/main molmodel 3.0.113.gd05a5b6-1 (tar) [8555 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main molmodel 3.0.113.gd05a5b6-1 (diff) [2552 B]
Fetched 8559 kB in 3s (2504 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/molmodel-nC4TBF/molmodel-3.0.113.gd05a5b6' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/molmodel-nC4TBF' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-0wBkwy/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-0wBkwy/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-0wBkwy/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-0wBkwy/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-0wBkwy/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-0wBkwy/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-0wBkwy/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-0wBkwy/apt_archive ./ Packages [432 B]
Fetched 2108 B in 1s (2432 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
netbase sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 8 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-0wBkwy/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (22.2 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12559 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: cmake, debhelper-compat (= 13), gemmi-dev, libmmdb2-dev, libsimbody-dev, tao-pegtl-dev, zlib1g-dev
Filtered Build-Depends: cmake, debhelper-compat (= 13), gemmi-dev, libmmdb2-dev, libsimbody-dev, tao-pegtl-dev, zlib1g-dev
dpkg-deb: building package 'sbuild-build-depends-molmodel-dummy' in '/<<BUILDDIR>>/resolver-0wBkwy/apt_archive/sbuild-build-depends-molmodel-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-molmodel-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-0wBkwy/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-0wBkwy/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-0wBkwy/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-0wBkwy/apt_archive ./ Sources [536 B]
Get:5 copy:/<<BUILDDIR>>/resolver-0wBkwy/apt_archive ./ Packages [617 B]
Fetched 2486 B in 1s (3344 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install molmodel build dependencies (apt-based resolver)
--------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils cmake cmake-data
debhelper dh-autoreconf dh-elpa-helper dh-strip-nondeterminism dwz
emacsen-common file freeglut3 freeglut3-dev gemmi-dev gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libarchive13 libblas-dev
libblas3 libbrotli1 libbsd0 libcurl4 libdebhelper-perl libdrm-amdgpu1
libdrm-common libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libegl-dev
libegl-mesa0 libegl1 libelf1 libexpat1 libfile-stripnondeterminism-perl
libgbm1 libgfortran5 libgl-dev libgl1 libgl1-mesa-dev libgl1-mesa-dri
libglapi-mesa libgles-dev libgles1 libgles2 libglu1-mesa libglu1-mesa-dev
libglvnd-core-dev libglvnd-dev libglvnd0 libglx-dev libglx-mesa0 libglx0
libice-dev libice6 libicu67 libjsoncpp24 liblapack-dev liblapack3 libllvm12
libmagic-mgc libmagic1 libmd0 libmmdb2-0 libmmdb2-dev libncurses6
libnghttp2-14 libopengl-dev libopengl0 libpipeline1 libprocps8 libpsl5
libpthread-stubs0-dev librhash0 librtmp1 libsensors-config libsensors5
libsigsegv2 libsimbody-dev libsimbody3.6 libsm-dev libsm6 libssh2-1
libsub-override-perl libtool libuchardet0 libuv1 libvulkan1
libwayland-client0 libwayland-server0 libx11-6 libx11-data libx11-dev
libx11-xcb1 libxau-dev libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0
libxcb-present0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxcb1-dev
libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes-dev libxfixes3
libxi-dev libxi6 libxml2 libxmu-dev libxmu-headers libxmu6 libxshmfence1
libxt-dev libxt6 libxxf86vm1 libz3-4 m4 man-db po-debconf procps
tao-pegtl-dev x11-common x11proto-dev xorg-sgml-doctools xtrans-dev
zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc cmake-doc ninja-build dh-make
gettext-doc libasprintf-dev libgettextpo-dev groff lrzip liblapack-doc
libice-doc lm-sensors libsm-doc libtool-doc gfortran | fortran95-compiler
gcj-jdk libx11-doc libxcb-doc libxext-doc libxt-doc m4-doc apparmor less
www-browser libmail-box-perl
Recommended packages:
curl | wget | lynx ca-certificates libarchive-cpio-perl libgpm2 publicsuffix
libltdl-dev mesa-vulkan-drivers | vulkan-icd libmail-sendmail-perl psmisc
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils cmake cmake-data
debhelper dh-autoreconf dh-elpa-helper dh-strip-nondeterminism dwz
emacsen-common file freeglut3 freeglut3-dev gemmi-dev gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libarchive13 libblas-dev
libblas3 libbrotli1 libbsd0 libcurl4 libdebhelper-perl libdrm-amdgpu1
libdrm-common libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libegl-dev
libegl-mesa0 libegl1 libelf1 libexpat1 libfile-stripnondeterminism-perl
libgbm1 libgfortran5 libgl-dev libgl1 libgl1-mesa-dev libgl1-mesa-dri
libglapi-mesa libgles-dev libgles1 libgles2 libglu1-mesa libglu1-mesa-dev
libglvnd-core-dev libglvnd-dev libglvnd0 libglx-dev libglx-mesa0 libglx0
libice-dev libice6 libicu67 libjsoncpp24 liblapack-dev liblapack3 libllvm12
libmagic-mgc libmagic1 libmd0 libmmdb2-0 libmmdb2-dev libncurses6
libnghttp2-14 libopengl-dev libopengl0 libpipeline1 libprocps8 libpsl5
libpthread-stubs0-dev librhash0 librtmp1 libsensors-config libsensors5
libsigsegv2 libsimbody-dev libsimbody3.6 libsm-dev libsm6 libssh2-1
libsub-override-perl libtool libuchardet0 libuv1 libvulkan1
libwayland-client0 libwayland-server0 libx11-6 libx11-data libx11-dev
libx11-xcb1 libxau-dev libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0
libxcb-present0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxcb1-dev
libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes-dev libxfixes3
libxi-dev libxi6 libxml2 libxmu-dev libxmu-headers libxmu6 libxshmfence1
libxt-dev libxt6 libxxf86vm1 libz3-4 m4 man-db po-debconf procps
sbuild-build-depends-molmodel-dummy tao-pegtl-dev x11-common x11proto-dev
xorg-sgml-doctools xtrans-dev zlib1g-dev
0 upgraded, 139 newly installed, 0 to remove and 8 not upgraded.
Need to get 73.4 MB of archives.
After this operation, 306 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-0wBkwy/apt_archive ./ sbuild-build-depends-molmodel-dummy 0.invalid.0 [900 B]
Get:2 http://172.17.0.1/private bookworm-staging/main armhf bsdextrautils armhf 2.37.2-4 [135 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:4 http://172.17.0.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-7 [793 kB]
Get:5 http://172.17.0.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.4-1 [31.6 kB]
Get:6 http://172.17.0.1/private bookworm-staging/main armhf man-db armhf 2.9.4-2 [1307 kB]
Get:7 http://172.17.0.1/private bookworm-staging/main armhf libncurses6 armhf 6.3-1 [79.8 kB]
Get:8 http://172.17.0.1/private bookworm-staging/main armhf libprocps8 armhf 2:3.3.17-5 [60.5 kB]
Get:9 http://172.17.0.1/private bookworm-staging/main armhf procps armhf 2:3.3.17-5 [475 kB]
Get:10 http://172.17.0.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.41-2 [295 kB]
Get:11 http://172.17.0.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.41-2 [119 kB]
Get:12 http://172.17.0.1/private bookworm-staging/main armhf file armhf 1:5.41-2 [65.8 kB]
Get:13 http://172.17.0.1/private bookworm-staging/main armhf gettext-base armhf 0.21-4 [171 kB]
Get:14 http://172.17.0.1/private bookworm-staging/main armhf libsigsegv2 armhf 2.13-1 [34.3 kB]
Get:15 http://172.17.0.1/private bookworm-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:16 http://172.17.0.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:17 http://172.17.0.1/private bookworm-staging/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get:18 http://172.17.0.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.1 [823 kB]
Get:19 http://172.17.0.1/private bookworm-staging/main armhf autopoint all 0.21-4 [510 kB]
Get:20 http://172.17.0.1/private bookworm-staging/main armhf libicu67 armhf 67.1-7 [8291 kB]
Get:21 http://172.17.0.1/private bookworm-staging/main armhf libxml2 armhf 2.9.12+dfsg-5 [584 kB]
Get:22 http://172.17.0.1/private bookworm-staging/main armhf libarchive13 armhf 3.4.3-2 [294 kB]
Get:23 http://172.17.0.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b1 [261 kB]
Get:24 http://172.17.0.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.43.0-1 [65.3 kB]
Get:25 http://172.17.0.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:26 http://172.17.0.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:27 http://172.17.0.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-2 [161 kB]
Get:28 http://172.17.0.1/private bookworm-staging/main armhf libcurl4 armhf 7.79.1-2 [320 kB]
Get:29 http://172.17.0.1/private bookworm-staging/main armhf libexpat1 armhf 2.4.1-3 [80.1 kB]
Get:30 http://172.17.0.1/private bookworm-staging/main armhf libjsoncpp24 armhf 1.9.4-5 [67.4 kB]
Get:31 http://172.17.0.1/private bookworm-staging/main armhf librhash0 armhf 1.4.2-1 [141 kB]
Get:32 http://172.17.0.1/private bookworm-staging/main armhf libuv1 armhf 1.42.0-1 [121 kB]
Get:33 http://172.17.0.1/private bookworm-staging/main armhf dh-elpa-helper all 2.0.9 [11.2 kB]
Get:34 http://172.17.0.1/private bookworm-staging/main armhf emacsen-common all 3.0.4 [19.3 kB]
Get:35 http://172.17.0.1/private bookworm-staging/main armhf cmake-data all 3.22.0-1 [1902 kB]
Get:36 http://172.17.0.1/private bookworm-staging/main armhf cmake armhf 3.22.0-1 [3499 kB]
Get:37 http://172.17.0.1/private bookworm-staging/main armhf libdebhelper-perl all 13.5.2 [192 kB]
Get:38 http://172.17.0.1/private bookworm-staging/main armhf libtool all 2.4.6-15 [513 kB]
Get:39 http://172.17.0.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:40 http://172.17.0.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:41 http://172.17.0.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:42 http://172.17.0.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.12.1-1 [26.5 kB]
Get:43 http://172.17.0.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.12.1-1 [15.6 kB]
Get:44 http://172.17.0.1/private bookworm-staging/main armhf libelf1 armhf 0.186-1 [174 kB]
Get:45 http://172.17.0.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:46 http://172.17.0.1/private bookworm-staging/main armhf gettext armhf 0.21-4 [1215 kB]
Get:47 http://172.17.0.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:48 http://172.17.0.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:49 http://172.17.0.1/private bookworm-staging/main armhf debhelper all 13.5.2 [1056 kB]
Get:50 http://172.17.0.1/private bookworm-staging/main armhf libglvnd0 armhf 1.3.4-2 [54.8 kB]
Get:51 http://172.17.0.1/private bookworm-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:52 http://172.17.0.1/private bookworm-staging/main armhf libmd0 armhf 1.0.4-1 [28.9 kB]
Get:53 http://172.17.0.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.3-1 [103 kB]
Get:54 http://172.17.0.1/private bookworm-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:55 http://172.17.0.1/private bookworm-staging/main armhf libxcb1 armhf 1.14-3 [136 kB]
Get:56 http://172.17.0.1/private bookworm-staging/main armhf libx11-data all 2:1.7.2-2 [311 kB]
Get:57 http://172.17.0.1/private bookworm-staging/main armhf libx11-6 armhf 2:1.7.2-2 [704 kB]
Get:58 http://172.17.0.1/private bookworm-staging/main armhf libdrm-common all 2.4.108-1+rpi1 [15.4 kB]
Get:59 http://172.17.0.1/private bookworm-staging/main armhf libdrm2 armhf 2.4.108-1+rpi1 [40.5 kB]
Get:60 http://172.17.0.1/private bookworm-staging/main armhf libglapi-mesa armhf 21.2.5-1+rpi1 [83.6 kB]
Get:61 http://172.17.0.1/private bookworm-staging/main armhf libx11-xcb1 armhf 2:1.7.2-2 [203 kB]
Get:62 http://172.17.0.1/private bookworm-staging/main armhf libxcb-dri2-0 armhf 1.14-3 [103 kB]
Get:63 http://172.17.0.1/private bookworm-staging/main armhf libxcb-dri3-0 armhf 1.14-3 [102 kB]
Get:64 http://172.17.0.1/private bookworm-staging/main armhf libxcb-glx0 armhf 1.14-3 [117 kB]
Get:65 http://172.17.0.1/private bookworm-staging/main armhf libxcb-present0 armhf 1.14-3 [101 kB]
Get:66 http://172.17.0.1/private bookworm-staging/main armhf libxcb-shm0 armhf 1.14-3 [101 kB]
Get:67 http://172.17.0.1/private bookworm-staging/main armhf libxcb-sync1 armhf 1.14-3 [104 kB]
Get:68 http://172.17.0.1/private bookworm-staging/main armhf libxcb-xfixes0 armhf 1.14-3 [105 kB]
Get:69 http://172.17.0.1/private bookworm-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:70 http://172.17.0.1/private bookworm-staging/main armhf libxfixes3 armhf 1:5.0.3-2 [20.7 kB]
Get:71 http://172.17.0.1/private bookworm-staging/main armhf libxshmfence1 armhf 1.3-1 [8636 B]
Get:72 http://172.17.0.1/private bookworm-staging/main armhf libxxf86vm1 armhf 1:1.1.4-1+b2 [20.1 kB]
Get:73 http://172.17.0.1/private bookworm-staging/main armhf libdrm-amdgpu1 armhf 2.4.108-1+rpi1 [27.9 kB]
Get:74 http://172.17.0.1/private bookworm-staging/main armhf libdrm-nouveau2 armhf 2.4.108-1+rpi1 [25.5 kB]
Get:75 http://172.17.0.1/private bookworm-staging/main armhf libdrm-radeon1 armhf 2.4.108-1+rpi1 [29.6 kB]
Get:76 http://172.17.0.1/private bookworm-staging/main armhf libedit2 armhf 3.1-20210910-1 [81.2 kB]
Get:77 http://172.17.0.1/private bookworm-staging/main armhf libz3-4 armhf 4.8.12-1 [5758 kB]
Get:78 http://172.17.0.1/private bookworm-staging/main armhf libllvm12 armhf 1:12.0.1-16+rpi1 [17.1 MB]
Get:79 http://172.17.0.1/private bookworm-staging/main armhf libsensors-config all 1:3.6.0-7 [32.3 kB]
Get:80 http://172.17.0.1/private bookworm-staging/main armhf libsensors5 armhf 1:3.6.0-7 [49.6 kB]
Get:81 http://172.17.0.1/private bookworm-staging/main armhf libvulkan1 armhf 1.2.189.0-2 [84.3 kB]
Get:82 http://172.17.0.1/private bookworm-staging/main armhf libgl1-mesa-dri armhf 21.2.5-1+rpi1 [6394 kB]
Get:83 http://172.17.0.1/private bookworm-staging/main armhf libglx-mesa0 armhf 21.2.5-1+rpi1 [169 kB]
Get:84 http://172.17.0.1/private bookworm-staging/main armhf libglx0 armhf 1.3.4-2 [26.6 kB]
Get:85 http://172.17.0.1/private bookworm-staging/main armhf libgl1 armhf 1.3.4-2 [105 kB]
Get:86 http://172.17.0.1/private bookworm-staging/main armhf libxi6 armhf 2:1.8-1 [78.1 kB]
Get:87 http://172.17.0.1/private bookworm-staging/main armhf freeglut3 armhf 2.8.1-6 [112 kB]
Get:88 http://172.17.0.1/private bookworm-staging/main armhf xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB]
Get:89 http://172.17.0.1/private bookworm-staging/main armhf x11proto-dev all 2021.5-1 [599 kB]
Get:90 http://172.17.0.1/private bookworm-staging/main armhf libxau-dev armhf 1:1.0.9-1 [22.3 kB]
Get:91 http://172.17.0.1/private bookworm-staging/main armhf libxdmcp-dev armhf 1:1.1.2-3 [40.9 kB]
Get:92 http://172.17.0.1/private bookworm-staging/main armhf xtrans-dev all 1.4.0-1 [98.7 kB]
Get:93 http://172.17.0.1/private bookworm-staging/main armhf libpthread-stubs0-dev armhf 0.4-1 [5344 B]
Get:94 http://172.17.0.1/private bookworm-staging/main armhf libxcb1-dev armhf 1.14-3 [171 kB]
Get:95 http://172.17.0.1/private bookworm-staging/main armhf libx11-dev armhf 2:1.7.2-2 [780 kB]
Get:96 http://172.17.0.1/private bookworm-staging/main armhf libglx-dev armhf 1.3.4-2 [16.6 kB]
Get:97 http://172.17.0.1/private bookworm-staging/main armhf libgl-dev armhf 1.3.4-2 [100 kB]
Get:98 http://172.17.0.1/private bookworm-staging/main armhf libglvnd-core-dev armhf 1.3.4-2 [14.1 kB]
Get:99 http://172.17.0.1/private bookworm-staging/main armhf libwayland-server0 armhf 1.19.0-2+b1 [28.3 kB]
Get:100 http://172.17.0.1/private bookworm-staging/main armhf libgbm1 armhf 21.2.5-1+rpi1 [73.6 kB]
Get:101 http://172.17.0.1/private bookworm-staging/main armhf libwayland-client0 armhf 1.19.0-2+b1 [22.4 kB]
Get:102 http://172.17.0.1/private bookworm-staging/main armhf libegl-mesa0 armhf 21.2.5-1+rpi1 [125 kB]
Get:103 http://172.17.0.1/private bookworm-staging/main armhf libegl1 armhf 1.3.4-2 [29.8 kB]
Get:104 http://172.17.0.1/private bookworm-staging/main armhf libegl-dev armhf 1.3.4-2 [20.1 kB]
Get:105 http://172.17.0.1/private bookworm-staging/main armhf libgles1 armhf 1.3.4-2 [13.4 kB]
Get:106 http://172.17.0.1/private bookworm-staging/main armhf libgles2 armhf 1.3.4-2 [20.3 kB]
Get:107 http://172.17.0.1/private bookworm-staging/main armhf libgles-dev armhf 1.3.4-2 [50.6 kB]
Get:108 http://172.17.0.1/private bookworm-staging/main armhf libopengl0 armhf 1.3.4-2 [38.9 kB]
Get:109 http://172.17.0.1/private bookworm-staging/main armhf libopengl-dev armhf 1.3.4-2 [6156 B]
Get:110 http://172.17.0.1/private bookworm-staging/main armhf libglvnd-dev armhf 1.3.4-2 [5916 B]
Get:111 http://172.17.0.1/private bookworm-staging/main armhf libgl1-mesa-dev armhf 21.2.5-1+rpi1 [54.2 kB]
Get:112 http://172.17.0.1/private bookworm-staging/main armhf libglu1-mesa armhf 9.0.1-1 [127 kB]
Get:113 http://172.17.0.1/private bookworm-staging/main armhf libglu1-mesa-dev armhf 9.0.1-1 [166 kB]
Get:114 http://172.17.0.1/private bookworm-staging/main armhf libxext-dev armhf 2:1.3.4-1 [102 kB]
Get:115 http://172.17.0.1/private bookworm-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:116 http://172.17.0.1/private bookworm-staging/main armhf libice6 armhf 2:1.0.10-1 [51.7 kB]
Get:117 http://172.17.0.1/private bookworm-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:118 http://172.17.0.1/private bookworm-staging/main armhf libxt6 armhf 1:1.2.0-1 [159 kB]
Get:119 http://172.17.0.1/private bookworm-staging/main armhf libice-dev armhf 2:1.0.10-1 [58.7 kB]
Get:120 http://172.17.0.1/private bookworm-staging/main armhf libsm-dev armhf 2:1.2.3-1 [35.4 kB]
Get:121 http://172.17.0.1/private bookworm-staging/main armhf libxt-dev armhf 1:1.2.0-1 [372 kB]
Get:122 http://172.17.0.1/private bookworm-staging/main armhf freeglut3-dev armhf 2.8.1-6 [165 kB]
Get:123 http://172.17.0.1/private bookworm-staging/main armhf gemmi-dev armhf 0.5.0+ds-1 [377 kB]
Get:124 http://172.17.0.1/private bookworm-staging/main armhf libblas3 armhf 3.10.0-1 [108 kB]
Get:125 http://172.17.0.1/private bookworm-staging/main armhf libblas-dev armhf 3.10.0-1 [113 kB]
Get:126 http://172.17.0.1/private bookworm-staging/main armhf libgfortran5 armhf 11.2.0-10+rpi1 [234 kB]
Get:127 http://172.17.0.1/private bookworm-staging/main armhf liblapack3 armhf 3.10.0-1 [1594 kB]
Get:128 http://172.17.0.1/private bookworm-staging/main armhf liblapack-dev armhf 3.10.0-1 [2872 kB]
Get:129 http://172.17.0.1/private bookworm-staging/main armhf libmmdb2-0 armhf 2.0.5-1 [264 kB]
Get:130 http://172.17.0.1/private bookworm-staging/main armhf libmmdb2-dev armhf 2.0.5-1 [91.9 kB]
Get:131 http://172.17.0.1/private bookworm-staging/main armhf libxfixes-dev armhf 1:5.0.3-2 [22.9 kB]
Get:132 http://172.17.0.1/private bookworm-staging/main armhf libxi-dev armhf 2:1.8-1 [238 kB]
Get:133 http://172.17.0.1/private bookworm-staging/main armhf libxmu6 armhf 2:1.1.2-2+b3 [52.1 kB]
Get:134 http://172.17.0.1/private bookworm-staging/main armhf libxmu-headers all 2:1.1.2-2 [51.9 kB]
Get:135 http://172.17.0.1/private bookworm-staging/main armhf libxmu-dev armhf 2:1.1.2-2+b3 [56.5 kB]
Get:136 http://172.17.0.1/private bookworm-staging/main armhf libsimbody3.6 armhf 3.6.1+dfsg-7 [2644 kB]
Get:137 http://172.17.0.1/private bookworm-staging/main armhf libsimbody-dev armhf 3.6.1+dfsg-7 [2725 kB]
Get:138 http://172.17.0.1/private bookworm-staging/main armhf tao-pegtl-dev all 2.8.3-3 [59.1 kB]
Get:139 http://172.17.0.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up libexpat1:armhf (2.4.1-3) ...
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Setting up bsdextrautils (2.37.2-4) ...
update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode
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invoke-rc.d: could not determine current runlevel
invoke-rc.d: policy-rc.d denied execution of restart.
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Setting up libnghttp2-14:armhf (1.43.0-1) ...
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Setting up libopengl0:armhf (1.3.4-2) ...
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
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Setting up libblas-dev:armhf (3.10.0-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
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Setting up autoconf (2.71-2) ...
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Setting up dwz (0.14-1) ...
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Setting up libx11-6:armhf (2:1.7.2-2) ...
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Setting up automake (1:1.16.5-1.1) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
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Setting up libdrm-nouveau2:armhf (2.4.108-1+rpi1) ...
Setting up libxcb1-dev:armhf (1.14-3) ...
Setting up libgbm1:armhf (21.2.5-1+rpi1) ...
Setting up libsm-dev:armhf (2:1.2.3-1) ...
Setting up libdrm-radeon1:armhf (2.4.108-1+rpi1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libgl1-mesa-dri:armhf (21.2.5-1+rpi1) ...
Setting up libx11-dev:armhf (2:1.7.2-2) ...
Setting up libxext6:armhf (2:1.3.4-1) ...
Setting up man-db (2.9.4-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libxxf86vm1:armhf (1:1.1.4-1+b2) ...
Setting up dh-autoreconf (20) ...
Setting up libegl-mesa0:armhf (21.2.5-1+rpi1) ...
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Setting up libxt6:armhf (1:1.2.0-1) ...
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Setting up libegl1:armhf (1.3.4-2) ...
Setting up cmake (3.22.0-1) ...
Setting up libxmu-headers (2:1.1.2-2) ...
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Setting up libxi6:armhf (2:1.8-1) ...
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Setting up libxt-dev:armhf (1:1.2.0-1) ...
Setting up libglx-dev:armhf (1.3.4-2) ...
Setting up libglu1-mesa:armhf (9.0.1-1) ...
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Setting up libgl-dev:armhf (1.3.4-2) ...
Setting up freeglut3:armhf (2.8.1-6) ...
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Setting up libglu1-mesa-dev:armhf (9.0.1-1) ...
Setting up libsimbody3.6:armhf (3.6.1+dfsg-7) ...
Setting up libgles-dev:armhf (1.3.4-2) ...
Setting up libglvnd-dev:armhf (1.3.4-2) ...
Setting up libgl1-mesa-dev:armhf (21.2.5-1+rpi1) ...
Setting up freeglut3-dev:armhf (2.8.1-6) ...
Setting up libsimbody-dev:armhf (3.6.1+dfsg-7) ...
Setting up sbuild-build-depends-molmodel-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.32-4+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.37-5+rpi1 dpkg-dev_1.20.9+rpi1 g++-11_11.2.0-10+rpi1 gcc-11_11.2.0-10+rpi1 libc6-dev_2.32-4+rpi1 libstdc++-11-dev_11.2.0-10+rpi1 libstdc++6_11.2.0-10+rpi1 linux-libc-dev_5.14.16-1+rpi1
Package versions: adduser_3.118 apt_2.3.12 autoconf_2.71-2 automake_1:1.16.5-1.1 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_12+rpi1 base-passwd_3.5.52 bash_5.1-3.1 binutils_2.37-5+rpi1 binutils-arm-linux-gnueabihf_2.37-5+rpi1 binutils-common_2.37-5+rpi1 bsdextrautils_2.37.2-4 bsdutils_1:2.37.2-4 build-essential_12.9 bzip2_1.0.8-4 cmake_3.22.0-1 cmake-data_3.22.0-1 coreutils_8.32-4.1 cpp_4:11.2.0-2+rpi1 cpp-11_11.2.0-10+rpi1 dash_0.5.11+git20210903+057cd650a4ed-3 debconf_1.5.79 debhelper_13.5.2 debianutils_4.11.2 dh-autoreconf_20 dh-elpa-helper_2.0.9 dh-strip-nondeterminism_1.12.1-1 diffutils_1:3.7-5 dirmngr_2.2.27-2 dpkg_1.20.9+rpi1 dpkg-dev_1.20.9+rpi1 dwz_0.14-1 e2fsprogs_1.46.4-1 emacsen-common_3.0.4 fakeroot_1.25.3-1.1 file_1:5.41-2 findutils_4.8.0-1 freeglut3_2.8.1-6 freeglut3-dev_2.8.1-6 g++_4:11.2.0-2+rpi1 g++-11_11.2.0-10+rpi1 gcc_4:11.2.0-2+rpi1 gcc-11_11.2.0-10+rpi1 gcc-11-base_11.2.0-10+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 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+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.tE1CNTku/trustedkeys.kbx': General error
gpgv: Signature made Fri Nov 26 14:54:26 2021 UTC
gpgv: using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287
gpgv: issuer "merkys@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./molmodel_3.0.113.gd05a5b6-1.dsc
dpkg-source: info: extracting molmodel in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking molmodel_3.0.113.gd05a5b6.orig.tar.xz
dpkg-source: info: unpacking molmodel_3.0.113.gd05a5b6-1.debian.tar.xz
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-524eaedc-f995-4619-b75f-72bf8ead792a
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package molmodel
dpkg-buildpackage: info: source version 3.0.113.gd05a5b6-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean
dh_clean
debian/rules binary-arch
dh binary-arch
dh_update_autotools_config -a
dh_autoreconf -a
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure -- -DBUILD_EXAMPLES=OFF
cd obj-arm-linux-gnueabihf && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf -DBUILD_EXAMPLES=OFF ..
CMake Deprecation Warning at CMakeLists.txt:31 (CMAKE_MINIMUM_REQUIRED):
Compatibility with CMake < 2.8.12 will be removed from a future version of
CMake.
Update the VERSION argument <min> value or use a ...<max> suffix to tell
CMake that the project does not need compatibility with older versions.
-- The C compiler identification is GNU 11.2.0
-- The CXX compiler identification is GNU 11.2.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Could NOT find OpenMM (missing: OpenMM_INCLUDE_DIR OpenMM_LIBRARIES)
CMake Deprecation Warning at cmake_modules/FindSimbody.cmake:74 (cmake_minimum_required):
Compatibility with CMake < 2.8.12 will be removed from a future version of
CMake.
Update the VERSION argument <min> value or use a ...<max> suffix to tell
CMake that the project does not need compatibility with older versions.
Call Stack (most recent call first):
CMakeLists.txt:170 (find_package)
-- Could not find 'svnversion' executable; 'about' will be wrong. (Cygwin provides one on Windows.)
-- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE)
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_EXPORT_NO_PACKAGE_REGISTRY
CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY
CMAKE_INSTALL_LIBDIR
CMAKE_INSTALL_LOCALSTATEDIR
CMAKE_INSTALL_RUNSTATEDIR
CMAKE_INSTALL_SYSCONFDIR
-- Build files have been written to: /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build -a
cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -S/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f sharedTarget/CMakeFiles/SimTKmolmodel.dir/build.make sharedTarget/CMakeFiles/SimTKmolmodel.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/sharedTarget /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/sharedTarget /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/sharedTarget/CMakeFiles/SimTKmolmodel.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f sharedTarget/CMakeFiles/SimTKmolmodel.dir/build.make sharedTarget/CMakeFiles/SimTKmolmodel.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 2%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/Biotype.cpp.o
[ 2%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/BondGeometry.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/sharedTarget && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -fPIC -std=c++14 -MD -MT sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/Biotype.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/__/src/Biotype.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/__/src/Biotype.cpp.o -c /<<PKGBUILDDIR>>/src/Biotype.cpp
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/sharedTarget && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -fPIC -std=c++14 -MD -MT sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/BondGeometry.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/__/src/BondGeometry.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/__/src/BondGeometry.cpp.o -c /<<PKGBUILDDIR>>/src/BondGeometry.cpp
[ 2%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/AtomSubsystem.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/sharedTarget && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -fPIC -std=c++14 -MD -MT sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/AtomSubsystem.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/__/src/AtomSubsystem.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/__/src/AtomSubsystem.cpp.o -c /<<PKGBUILDDIR>>/src/AtomSubsystem.cpp
[ 3%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/About.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/sharedTarget && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -fPIC -std=c++14 -MD -MT sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/About.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/__/src/About.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/__/src/About.cpp.o -c /<<PKGBUILDDIR>>/src/About.cpp
[ 4%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/Compound.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/sharedTarget && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -fPIC -std=c++14 -MD -MT sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/Compound.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/__/src/Compound.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/__/src/Compound.cpp.o -c /<<PKGBUILDDIR>>/src/Compound.cpp
[ 5%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/CompoundSystem.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/sharedTarget && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -fPIC -std=c++14 -MD -MT sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/CompoundSystem.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/__/src/CompoundSystem.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/__/src/CompoundSystem.cpp.o -c /<<PKGBUILDDIR>>/src/CompoundSystem.cpp
In file included from /usr/include/c++/11/vector:72,
from /usr/include/simbody/SimTKcommon/internal/Array.h:39,
from /usr/include/simbody/SimTKcommon/basics.h:53,
from /usr/include/simbody/SimTKcommon.h:32,
from /usr/include/simbody/SimTKsimbody.h:43,
from /<<PKGBUILDDIR>>/./include/molmodel/internal/AtomSubsystem.h:4,
from /<<PKGBUILDDIR>>/src/AtomSubsystem.cpp:1:
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {SimTK::AtomSubsystem::Atom}; _Tp = SimTK::AtomSubsystem::Atom; _Alloc = std::allocator<SimTK::AtomSubsystem::Atom>]':
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<SimTK::AtomSubsystem::Atom>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function 'SimTK::AtomSubsystem::AtomIndex SimTK::AtomSubsystem::addAtom(SimTK::AtomSubsystem::mass_t)':
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<SimTK::AtomSubsystem::Atom*, std::vector<SimTK::AtomSubsystem::Atom> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<SimTK::Vec<3, double, 1>, SimTK::AtomSubsystem::AtomIndex>}; _Tp = std::pair<SimTK::Vec<3>, SimTK::AtomSubsystem::AtomIndex>; _Alloc = std::allocator<std::pair<SimTK::Vec<3>, SimTK::AtomSubsystem::AtomIndex> >]':
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<std::pair<SimTK::Vec<3>, SimTK::AtomSubsystem::AtomIndex>, std::allocator<std::pair<SimTK::Vec<3>, SimTK::AtomSubsystem::AtomIndex> > >::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function 'void SimTK::AtomSubsystem::PairIterator::populateVoxelHash(std::vector<SimTK::AtomSubsystem::AtomsByBody>::const_iterator)':
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<SimTK::Vec<3>, SimTK::AtomSubsystem::AtomIndex>*, std::vector<std::pair<SimTK::Vec<3>, SimTK::AtomSubsystem::AtomIndex>, std::allocator<std::pair<SimTK::Vec<3>, SimTK::AtomSubsystem::AtomIndex> > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 6%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/DuMMForceFieldSubsystem.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/sharedTarget && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -fPIC -std=c++14 -MD -MT sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/DuMMForceFieldSubsystem.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/__/src/DuMMForceFieldSubsystem.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/__/src/DuMMForceFieldSubsystem.cpp.o -c /<<PKGBUILDDIR>>/src/DuMMForceFieldSubsystem.cpp
In file included from /usr/include/c++/11/set:60,
from /usr/include/simbody/simmath/internal/Contact.h:30,
from /usr/include/simbody/SimTKmath.h:46,
from /usr/include/simbody/SimTKsimbody.h:44,
from /<<PKGBUILDDIR>>/./include/molmodel/internal/CompoundSystem.h:4,
from /<<PKGBUILDDIR>>/src/CompoundSystem.cpp:1:
/usr/include/c++/11/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const SimTK::Compound::AtomIndex&>, std::tuple<>}; _Key = SimTK::Compound::AtomIndex; _Val = std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding>; _KeyOfValue = std::_Select1st<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> >; _Compare = std::less<SimTK::Compound::AtomIndex>; _Alloc = std::allocator<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> >]':
/usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type 'std::_Rb_tree<SimTK::Compound::AtomIndex, std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding>, std::_Select1st<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> >, std::less<SimTK::Compound::AtomIndex>, std::allocator<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> > >::const_iterator' changed in GCC 7.1
2426 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/11/map:61,
from /usr/include/simbody/simmath/internal/CollisionDetectionAlgorithm.h:32,
from /usr/include/simbody/SimTKmath.h:48,
from /usr/include/simbody/SimTKsimbody.h:44,
from /<<PKGBUILDDIR>>/./include/molmodel/internal/CompoundSystem.h:4,
from /<<PKGBUILDDIR>>/src/CompoundSystem.cpp:1:
/usr/include/c++/11/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = SimTK::Compound::AtomIndex; _Tp = SimTK::AtomBonding; _Compare = std::less<SimTK::Compound::AtomIndex>; _Alloc = std::allocator<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> >]':
/usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type 'std::_Rb_tree<SimTK::Compound::AtomIndex, std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding>, std::_Select1st<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> >, std::less<SimTK::Compound::AtomIndex>, std::allocator<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> > >::const_iterator' changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In file included from /usr/include/c++/11/set:60,
from /usr/include/simbody/simmath/internal/Contact.h:30,
from /usr/include/simbody/SimTKmath.h:46,
from /usr/include/simbody/SimTKsimbody.h:44,
from /<<PKGBUILDDIR>>/./include/molmodel/internal/CompoundSystem.h:4,
from /<<PKGBUILDDIR>>/src/CompoundSystem.cpp:1:
/usr/include/c++/11/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const SimTK::DuMM::ClusterIndex&>, std::tuple<>}; _Key = SimTK::DuMM::ClusterIndex; _Val = std::pair<const SimTK::DuMM::ClusterIndex, SimTK::RigidUnit>; _KeyOfValue = std::_Select1st<std::pair<const SimTK::DuMM::ClusterIndex, SimTK::RigidUnit> >; _Compare = std::less<SimTK::DuMM::ClusterIndex>; _Alloc = std::allocator<std::pair<const SimTK::DuMM::ClusterIndex, SimTK::RigidUnit> >]':
/usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type 'std::_Rb_tree<SimTK::DuMM::ClusterIndex, std::pair<const SimTK::DuMM::ClusterIndex, SimTK::RigidUnit>, std::_Select1st<std::pair<const SimTK::DuMM::ClusterIndex, SimTK::RigidUnit> >, std::less<SimTK::DuMM::ClusterIndex>, std::allocator<std::pair<const SimTK::DuMM::ClusterIndex, SimTK::RigidUnit> > >::const_iterator' changed in GCC 7.1
2426 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/11/map:61,
from /usr/include/simbody/simmath/internal/CollisionDetectionAlgorithm.h:32,
from /usr/include/simbody/SimTKmath.h:48,
from /usr/include/simbody/SimTKsimbody.h:44,
from /<<PKGBUILDDIR>>/./include/molmodel/internal/CompoundSystem.h:4,
from /<<PKGBUILDDIR>>/src/CompoundSystem.cpp:1:
/usr/include/c++/11/bits/stl_map.h: In member function 'void SimTK::CompoundSystem::modelOneCompound(SimTK::CompoundSystem::CompoundIndex, SimTK::String)':
/usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type 'std::_Rb_tree<SimTK::Compound::AtomIndex, std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding>, std::_Select1st<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> >, std::less<SimTK::Compound::AtomIndex>, std::allocator<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> > >::const_iterator' changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type 'std::_Rb_tree<SimTK::Compound::AtomIndex, std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding>, std::_Select1st<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> >, std::less<SimTK::Compound::AtomIndex>, std::allocator<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> > >::const_iterator' changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type 'std::_Rb_tree<SimTK::Compound::AtomIndex, std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding>, std::_Select1st<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> >, std::less<SimTK::Compound::AtomIndex>, std::allocator<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> > >::const_iterator' changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type 'std::_Rb_tree<SimTK::Compound::AtomIndex, std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding>, std::_Select1st<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> >, std::less<SimTK::Compound::AtomIndex>, std::allocator<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> > >::const_iterator' changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type 'std::_Rb_tree<SimTK::Compound::AtomIndex, std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding>, std::_Select1st<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> >, std::less<SimTK::Compound::AtomIndex>, std::allocator<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> > >::const_iterator' changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type 'std::_Rb_tree<SimTK::Compound::AtomIndex, std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding>, std::_Select1st<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> >, std::less<SimTK::Compound::AtomIndex>, std::allocator<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> > >::const_iterator' changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type 'std::_Rb_tree<SimTK::Compound::AtomIndex, std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding>, std::_Select1st<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> >, std::less<SimTK::Compound::AtomIndex>, std::allocator<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> > >::const_iterator' changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type 'std::_Rb_tree<SimTK::DuMM::ClusterIndex, std::pair<const SimTK::DuMM::ClusterIndex, SimTK::RigidUnit>, std::_Select1st<std::pair<const SimTK::DuMM::ClusterIndex, SimTK::RigidUnit> >, std::less<SimTK::DuMM::ClusterIndex>, std::allocator<std::pair<const SimTK::DuMM::ClusterIndex, SimTK::RigidUnit> > >::const_iterator' changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type 'std::_Rb_tree<SimTK::DuMM::ClusterIndex, std::pair<const SimTK::DuMM::ClusterIndex, SimTK::RigidUnit>, std::_Select1st<std::pair<const SimTK::DuMM::ClusterIndex, SimTK::RigidUnit> >, std::less<SimTK::DuMM::ClusterIndex>, std::allocator<std::pair<const SimTK::DuMM::ClusterIndex, SimTK::RigidUnit> > >::const_iterator' changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/stl_map.h:501:44: note: parameter passing for argument of type 'std::_Rb_tree<SimTK::Compound::AtomIndex, std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding>, std::_Select1st<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> >, std::less<SimTK::Compound::AtomIndex>, std::allocator<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> > >::const_iterator' changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
[ 6%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/DuMMForceFieldSubsystemRep.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/sharedTarget && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -fPIC -std=c++14 -MD -MT sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/DuMMForceFieldSubsystemRep.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/__/src/DuMMForceFieldSubsystemRep.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/__/src/DuMMForceFieldSubsystemRep.cpp.o -c /<<PKGBUILDDIR>>/src/DuMMForceFieldSubsystemRep.cpp
[ 7%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/Element.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/sharedTarget && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -fPIC -std=c++14 -MD -MT sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/Element.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/__/src/Element.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/__/src/Element.cpp.o -c /<<PKGBUILDDIR>>/src/Element.cpp
In file included from /usr/include/c++/11/vector:72,
from /usr/include/simbody/SimTKcommon/internal/Array.h:39,
from /usr/include/simbody/SimTKcommon/basics.h:53,
from /usr/include/simbody/SimTKcommon.h:32,
from /usr/include/simbody/SimTKsimbody.h:43,
from /<<PKGBUILDDIR>>/src/Compound.cpp:32:
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Atom&}; _Tp = gemmi::Atom; _Alloc = std::allocator<gemmi::Atom>]':
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gemmi::Atom>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {SimTK::Compound::BondIndex&, SimTK::Compound::BondCenterIndex, SimTK::Compound::BondCenterIndex, const SimTK::Bond&}; _Tp = SimTK::BondInfo; _Alloc = std::allocator<SimTK::BondInfo>]':
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<SimTK::BondInfo>::iterator' changed in GCC 7.1
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const SimTK::Vec<3, double, 1>&}; _Tp = SimTK::Vec<3>; _Alloc = std::allocator<SimTK::Vec<3> >]':
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<SimTK::Vec<3> >::iterator' changed in GCC 7.1
[ 8%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/MolecularMechanicsSystem.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/sharedTarget && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -fPIC -std=c++14 -MD -MT sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/MolecularMechanicsSystem.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/__/src/MolecularMechanicsSystem.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/__/src/MolecularMechanicsSystem.cpp.o -c /<<PKGBUILDDIR>>/src/MolecularMechanicsSystem.cpp
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {SimTK::PdbAtomLocation}; _Tp = SimTK::PdbAtomLocation; _Alloc = std::allocator<SimTK::PdbAtomLocation>]':
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<SimTK::PdbAtomLocation>::iterator' changed in GCC 7.1
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {SimTK::BondCenter}; _Tp = SimTK::BondCenter; _Alloc = std::allocator<SimTK::BondCenter>]':
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<SimTK::BondCenter>::iterator' changed in GCC 7.1
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {SimTK::BondCenter}; _Tp = SimTK::BondCenter; _Alloc = std::allocator<SimTK::BondCenter>]':
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<SimTK::BondCenter*, std::vector<SimTK::BondCenter> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<SimTK::UnitVec<double, 1>, SimTK::UnitVec<double, 1> >}; _Tp = std::pair<SimTK::UnitVec<double, 1>, SimTK::UnitVec<double, 1> >; _Alloc = std::allocator<std::pair<SimTK::UnitVec<double, 1>, SimTK::UnitVec<double, 1> > >]':
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<std::pair<SimTK::UnitVec<double, 1>, SimTK::UnitVec<double, 1> > >::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {SimTK::Vec3Pair}; _Tp = SimTK::Vec3Pair; _Alloc = std::allocator<SimTK::Vec3Pair>]':
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<SimTK::Vec3Pair>::iterator' changed in GCC 7.1
/usr/include/c++/11/bits/vector.tcc: In member function 'SimTK::TransformAndResidual SimTK::CompoundRep::getTransformAndResidual(const AtomTargetLocations&) const':
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<SimTK::Vec3Pair*, std::vector<SimTK::Vec3Pair> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {SimTK::BondInfo}; _Tp = SimTK::BondInfo; _Alloc = std::allocator<SimTK::BondInfo>]':
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<SimTK::BondInfo>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {SimTK::BondInfo}; _Tp = SimTK::BondInfo; _Alloc = std::allocator<SimTK::BondInfo>]':
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<SimTK::BondInfo*, std::vector<SimTK::BondInfo> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function 'SimTK::PdbAtom& SimTK::PdbAtom::setLocation(SimTK::PdbAtomLocation&&)':
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<SimTK::PdbAtomLocation*, std::vector<SimTK::PdbAtomLocation> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/11/vector:67,
from /usr/include/simbody/SimTKcommon/internal/Array.h:39,
from /usr/include/simbody/SimTKcommon/basics.h:53,
from /usr/include/simbody/SimTKcommon.h:32,
from /usr/include/simbody/SimTKsimbody.h:43,
from /<<PKGBUILDDIR>>/src/Compound.cpp:32:
/usr/include/c++/11/bits/stl_vector.h: In member function 'void SimTK::CompoundRep::buildCif(const SimTK::State&, gemmi::Model*, gemmi::EntityType, int, const Transform&) const':
/usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gemmi::Atom*, std::vector<gemmi::Atom> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[ 9%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/PDBReader.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/sharedTarget && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -fPIC -std=c++14 -MD -MT sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/PDBReader.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/__/src/PDBReader.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/__/src/PDBReader.cpp.o -c /<<PKGBUILDDIR>>/src/PDBReader.cpp
In file included from /usr/include/c++/11/vector:72,
from /usr/include/simbody/SimTKcommon/internal/Array.h:39,
from /usr/include/simbody/SimTKcommon/basics.h:53,
from /usr/include/simbody/SimTKcommon.h:32,
from /usr/include/simbody/SimTKsimbody.h:43,
from /<<PKGBUILDDIR>>/src/Compound.cpp:32:
/usr/include/c++/11/bits/vector.tcc: In function 'SimTK::CompoundRep& SimTK::CompoundRep::matchDefaultAtomChirality(const AtomTargetLocations&, double&, SimTK::Angle, bool)':
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<SimTK::UnitVec<double, 1>, SimTK::UnitVec<double, 1> >*, std::vector<std::pair<SimTK::UnitVec<double, 1>, SimTK::UnitVec<double, 1> > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const SimTK::Compound::AtomIndex&, SimTK::CompoundAtom, bool}; _Tp = SimTK::AtomInfo; _Alloc = std::allocator<SimTK::AtomInfo>]':
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<SimTK::AtomInfo>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {SimTK::Compound::AtomIndex&, const SimTK::CompoundAtom&, bool&}; _Tp = SimTK::AtomInfo; _Alloc = std::allocator<SimTK::AtomInfo>]':
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<SimTK::AtomInfo>::iterator' changed in GCC 7.1
/usr/include/c++/11/bits/vector.tcc: In member function 'SimTK::CompoundRep& SimTK::CompoundRep::setBaseAtom(const AtomName&, const SimTK::Element*, const Transform&)':
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<SimTK::AtomInfo*, std::vector<SimTK::AtomInfo> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/11/vector:72,
from /usr/include/simbody/SimTKcommon/internal/Array.h:39,
from /usr/include/simbody/SimTKcommon/basics.h:53,
from /usr/include/simbody/SimTKcommon.h:32,
from /usr/include/simbody/SimTKsimbody.h:43,
from /<<PKGBUILDDIR>>/src/MolecularMechanicsSystem.cpp:37:
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<const SimTK::MobilizedBody*, SimTK::Vec<2, SimTK::Vec<3, double, 1>, 1> >}; _Tp = std::pair<const SimTK::MobilizedBody*, SimTK::Vec<2, SimTK::Vec<3> > >; _Alloc = std::allocator<std::pair<const SimTK::MobilizedBody*, SimTK::Vec<2, SimTK::Vec<3> > > >]':
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<std::pair<const SimTK::MobilizedBody*, SimTK::Vec<2, SimTK::Vec<3> > > >::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function 'void SimTK::MolecularMechanicsSystem::removeSystemRigidBodyMomentum(SimTK::State&, bool) const':
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<const SimTK::MobilizedBody*, SimTK::Vec<2, SimTK::Vec<3> > >*, std::vector<std::pair<const SimTK::MobilizedBody*, SimTK::Vec<2, SimTK::Vec<3> > > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<const SimTK::MobilizedBody*, SimTK::Vec<3, double, 1> >}; _Tp = std::pair<const SimTK::MobilizedBody*, SimTK::Vec<3> >; _Alloc = std::allocator<std::pair<const SimTK::MobilizedBody*, SimTK::Vec<3> > >]':
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<std::pair<const SimTK::MobilizedBody*, SimTK::Vec<3> > >::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function 'void SimTK::MolecularMechanicsSystem::moveSystemMassCenter(SimTK::State&, const Vec3&) const':
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<const SimTK::MobilizedBody*, SimTK::Vec<3> >*, std::vector<std::pair<const SimTK::MobilizedBody*, SimTK::Vec<3> > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function 'SimTK::Compound::BondCenterIndex SimTK::CompoundRep::absorbSubcompound(SimTK::Compound::Name, const SimTK::Compound&, bool)':
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<SimTK::AtomInfo*, std::vector<SimTK::AtomInfo> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<SimTK::BondInfo*, std::vector<SimTK::BondInfo> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 10%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/Pdb.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/sharedTarget && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -fPIC -std=c++14 -MD -MT sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/Pdb.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/__/src/Pdb.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/__/src/Pdb.cpp.o -c /<<PKGBUILDDIR>>/src/Pdb.cpp
In file included from /usr/include/c++/11/vector:67,
from /usr/include/simbody/SimTKcommon/internal/Array.h:39,
from /usr/include/simbody/SimTKcommon/basics.h:53,
from /usr/include/simbody/SimTKcommon.h:32,
from /usr/include/simbody/SimTKsimbody.h:43,
from /<<PKGBUILDDIR>>/src/Compound.cpp:32:
/usr/include/c++/11/bits/stl_vector.h: In member function 'void SimTK::Protein::loadFromPdbChain(const SimTK::PdbChain&, SimTK::Real)':
/usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<SimTK::Vec<3>*, std::vector<SimTK::Vec<3> > >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/11/bits/stl_vector.h: In member function 'SimTK::Compound& SimTK::Compound::fitDefaultConfiguration(const AtomTargetLocations&, SimTK::Real, bool, SimTK::Real)':
/usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<SimTK::Vec<3>*, std::vector<SimTK::Vec<3> > >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[ 10%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/PeriodicVmdReporter.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/sharedTarget && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -fPIC -std=c++14 -MD -MT sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/PeriodicVmdReporter.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/__/src/PeriodicVmdReporter.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/__/src/PeriodicVmdReporter.cpp.o -c /<<PKGBUILDDIR>>/src/PeriodicVmdReporter.cpp
In file included from /usr/include/c++/11/vector:72,
from /usr/include/simbody/SimTKcommon/internal/Array.h:39,
from /usr/include/simbody/SimTKcommon/basics.h:53,
from /usr/include/simbody/SimTKcommon.h:32,
from /<<PKGBUILDDIR>>/./include/molmodel/internal/common.h:40,
from /<<PKGBUILDDIR>>/./include/molmodel/internal/PDBReader.h:35,
from /<<PKGBUILDDIR>>/src/PDBReader.cpp:33:
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Mat33, gemmi::Vec3}; _Tp = gemmi::FTransform; _Alloc = std::allocator<gemmi::FTransform>]':
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gemmi::FTransform>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gemmi::FTransform>::iterator' changed in GCC 7.1
/usr/include/c++/11/bits/vector.tcc: In member function 'void gemmi::UnitCell::set_cell_images_from_spacegroup(const gemmi::SpaceGroup*)':
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gemmi::FTransform*, std::vector<gemmi::FTransform> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::FTransform&}; _Tp = gemmi::FTransform; _Alloc = std::allocator<gemmi::FTransform>]':
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gemmi::FTransform>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gemmi::FTransform>::iterator' changed in GCC 7.1
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Transform}; _Tp = gemmi::FTransform; _Alloc = std::allocator<gemmi::FTransform>]':
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gemmi::FTransform>::iterator' changed in GCC 7.1
/usr/include/c++/11/bits/vector.tcc: In member function 'void gemmi::UnitCell::add_ncs_images_to_cs_images(const std::vector<gemmi::NcsOp>&)':
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gemmi::FTransform*, std::vector<gemmi::FTransform> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gemmi::FTransform*, std::vector<gemmi::FTransform> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Connection&}; _Tp = gemmi::Connection; _Alloc = std::allocator<gemmi::Connection>]':
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gemmi::Connection>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gemmi::Connection&}; _Tp = gemmi::Connection; _Alloc = std::allocator<gemmi::Connection>]':
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gemmi::Connection*, std::vector<gemmi::Connection> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::Assembly::Operator; _Alloc = std::allocator<gemmi::Assembly::Operator>]':
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gemmi::Assembly::Operator>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {}; _Tp = gemmi::Assembly::Operator; _Alloc = std::allocator<gemmi::Assembly::Operator>]':
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gemmi::Assembly::Operator*, std::vector<gemmi::Assembly::Operator> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Assembly::Operator&}; _Tp = gemmi::Assembly::Operator; _Alloc = std::allocator<gemmi::Assembly::Operator>]':
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gemmi::Assembly::Operator>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::RefinementInfo; _Alloc = std::allocator<gemmi::RefinementInfo>]':
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gemmi::RefinementInfo>::iterator' changed in GCC 7.1
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::ExperimentInfo; _Alloc = std::allocator<gemmi::ExperimentInfo>]':
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gemmi::ExperimentInfo>::iterator' changed in GCC 7.1
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::CrystalInfo; _Alloc = std::allocator<gemmi::CrystalInfo>]':
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gemmi::CrystalInfo>::iterator' changed in GCC 7.1
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::DiffractionInfo; _Alloc = std::allocator<gemmi::DiffractionInfo>]':
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gemmi::DiffractionInfo>::iterator' changed in GCC 7.1
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {}; _Tp = gemmi::DiffractionInfo; _Alloc = std::allocator<gemmi::DiffractionInfo>]':
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gemmi::DiffractionInfo*, std::vector<gemmi::DiffractionInfo> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Atom&}; _Tp = gemmi::Atom; _Alloc = std::allocator<gemmi::Atom>]':
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gemmi::Atom>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gemmi::Atom&}; _Tp = gemmi::Atom; _Alloc = std::allocator<gemmi::Atom>]':
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gemmi::Atom*, std::vector<gemmi::Atom> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/11/vector:72,
from /usr/include/simbody/SimTKcommon/internal/Array.h:39,
from /usr/include/simbody/SimTKcommon/basics.h:53,
from /usr/include/simbody/SimTKcommon.h:32,
from /usr/include/simbody/SimTKsimbody.h:43,
from /<<PKGBUILDDIR>>/./include/molmodel/internal/Pdb.h:4,
from /<<PKGBUILDDIR>>/src/Pdb.cpp:4:
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Mat33, gemmi::Vec3}; _Tp = gemmi::FTransform; _Alloc = std::allocator<gemmi::FTransform>]':
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gemmi::FTransform>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gemmi::FTransform>::iterator' changed in GCC 7.1
/usr/include/c++/11/bits/vector.tcc: In member function 'void gemmi::UnitCell::set_cell_images_from_spacegroup(const gemmi::SpaceGroup*)':
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gemmi::FTransform*, std::vector<gemmi::FTransform> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::FTransform&}; _Tp = gemmi::FTransform; _Alloc = std::allocator<gemmi::FTransform>]':
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gemmi::FTransform>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gemmi::FTransform>::iterator' changed in GCC 7.1
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Transform}; _Tp = gemmi::FTransform; _Alloc = std::allocator<gemmi::FTransform>]':
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gemmi::FTransform>::iterator' changed in GCC 7.1
/usr/include/c++/11/bits/vector.tcc: In member function 'void gemmi::UnitCell::add_ncs_images_to_cs_images(const std::vector<gemmi::NcsOp>&)':
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gemmi::FTransform*, std::vector<gemmi::FTransform> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gemmi::FTransform*, std::vector<gemmi::FTransform> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 11%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/Representation.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/sharedTarget && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -fPIC -std=c++14 -MD -MT sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/Representation.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/__/src/Representation.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/__/src/Representation.cpp.o -c /<<PKGBUILDDIR>>/src/Representation.cpp
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >}; _Tp = gemmi::Assembly; _Alloc = std::allocator<gemmi::Assembly>]':
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gemmi::Assembly>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >}; _Tp = gemmi::Assembly; _Alloc = std::allocator<gemmi::Assembly>]':
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gemmi::Assembly*, std::vector<gemmi::Assembly> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::NcsOp}; _Tp = gemmi::NcsOp; _Alloc = std::allocator<gemmi::NcsOp>]':
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gemmi::NcsOp>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gemmi::NcsOp}; _Tp = gemmi::NcsOp; _Alloc = std::allocator<gemmi::NcsOp>]':
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gemmi::NcsOp*, std::vector<gemmi::NcsOp> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::Assembly::Operator; _Alloc = std::allocator<gemmi::Assembly::Operator>]':
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gemmi::Assembly::Operator>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {}; _Tp = gemmi::Assembly::Operator; _Alloc = std::allocator<gemmi::Assembly::Operator>]':
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gemmi::Assembly::Operator*, std::vector<gemmi::Assembly::Operator> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Assembly::Operator&}; _Tp = gemmi::Assembly::Operator; _Alloc = std::allocator<gemmi::Assembly::Operator>]':
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gemmi::Assembly::Operator>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::RefinementInfo; _Alloc = std::allocator<gemmi::RefinementInfo>]':
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gemmi::RefinementInfo>::iterator' changed in GCC 7.1
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::ExperimentInfo; _Alloc = std::allocator<gemmi::ExperimentInfo>]':
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gemmi::ExperimentInfo>::iterator' changed in GCC 7.1
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::CrystalInfo; _Alloc = std::allocator<gemmi::CrystalInfo>]':
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gemmi::CrystalInfo>::iterator' changed in GCC 7.1
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::DiffractionInfo; _Alloc = std::allocator<gemmi::DiffractionInfo>]':
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gemmi::DiffractionInfo>::iterator' changed in GCC 7.1
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Repr::Atom}; _Tp = Repr::Atom; _Alloc = std::allocator<Repr::Atom>]':
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<Repr::Atom>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {}; _Tp = gemmi::DiffractionInfo; _Alloc = std::allocator<gemmi::DiffractionInfo>]':
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gemmi::DiffractionInfo*, std::vector<gemmi::DiffractionInfo> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Atom&}; _Tp = gemmi::Atom; _Alloc = std::allocator<gemmi::Atom>]':
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gemmi::Atom>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gemmi::Atom&}; _Tp = gemmi::Atom; _Alloc = std::allocator<gemmi::Atom>]':
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gemmi::Atom*, std::vector<gemmi::Atom> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Connection&}; _Tp = gemmi::Connection; _Alloc = std::allocator<gemmi::Connection>]':
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gemmi::Connection>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gemmi::Connection&}; _Tp = gemmi::Connection; _Alloc = std::allocator<gemmi::Connection>]':
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gemmi::Connection*, std::vector<gemmi::Connection> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >}; _Tp = gemmi::Assembly; _Alloc = std::allocator<gemmi::Assembly>]':
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gemmi::Assembly>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >}; _Tp = gemmi::Assembly; _Alloc = std::allocator<gemmi::Assembly>]':
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gemmi::Assembly*, std::vector<gemmi::Assembly> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::NcsOp}; _Tp = gemmi::NcsOp; _Alloc = std::allocator<gemmi::NcsOp>]':
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gemmi::NcsOp>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gemmi::NcsOp}; _Tp = gemmi::NcsOp; _Alloc = std::allocator<gemmi::NcsOp>]':
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gemmi::NcsOp*, std::vector<gemmi::NcsOp> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {SimTK::PdbAtomLocation}; _Tp = SimTK::PdbAtomLocation; _Alloc = std::allocator<SimTK::PdbAtomLocation>]':
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<SimTK::PdbAtomLocation>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
[ 12%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/RiboseMobilizer.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/sharedTarget && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -fPIC -std=c++14 -MD -MT sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/RiboseMobilizer.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/__/src/RiboseMobilizer.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/__/src/RiboseMobilizer.cpp.o -c /<<PKGBUILDDIR>>/src/RiboseMobilizer.cpp
In file included from /usr/include/c++/11/vector:67,
from /usr/include/simbody/SimTKcommon/internal/Array.h:39,
from /usr/include/simbody/SimTKcommon/basics.h:53,
from /usr/include/simbody/SimTKcommon.h:32,
from /usr/include/simbody/SimTKsimbody.h:43,
from /<<PKGBUILDDIR>>/./include/molmodel/internal/Pdb.h:4,
from /<<PKGBUILDDIR>>/src/Pdb.cpp:4:
/usr/include/c++/11/bits/stl_vector.h: In function 'std::vector<gemmi::Assembly> gemmi::impl::read_assemblies(gemmi::cif::Block&)':
/usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gemmi::Assembly::Operator*, std::vector<gemmi::Assembly::Operator> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/11/vector:67,
from /usr/include/simbody/SimTKcommon/internal/Array.h:39,
from /usr/include/simbody/SimTKcommon/basics.h:53,
from /usr/include/simbody/SimTKcommon.h:32,
from /<<PKGBUILDDIR>>/./include/molmodel/internal/common.h:40,
from /<<PKGBUILDDIR>>/./include/molmodel/internal/PDBReader.h:35,
from /<<PKGBUILDDIR>>/src/PDBReader.cpp:33:
/usr/include/c++/11/bits/stl_vector.h: In function 'std::vector<gemmi::Assembly> gemmi::impl::read_assemblies(gemmi::cif::Block&)':
/usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gemmi::Assembly::Operator*, std::vector<gemmi::Assembly::Operator> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/11/vector:72,
from /usr/include/simbody/SimTKcommon/internal/Array.h:39,
from /usr/include/simbody/SimTKcommon/basics.h:53,
from /usr/include/simbody/SimTKcommon.h:32,
from /usr/include/simbody/SimTKsimbody.h:43,
from /<<PKGBUILDDIR>>/./include/molmodel/internal/Pdb.h:4,
from /<<PKGBUILDDIR>>/src/Pdb.cpp:4:
/usr/include/c++/11/bits/vector.tcc: In member function 'void SimTK::PdbAtom::parsePdbLine(const SimTK::String&)':
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<SimTK::PdbAtomLocation*, std::vector<SimTK::PdbAtomLocation> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In function 'gemmi::Structure gemmi::impl::make_structure_from_block(const gemmi::cif::Block&)':
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gemmi::RefinementInfo*, std::vector<gemmi::RefinementInfo> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gemmi::ExperimentInfo*, std::vector<gemmi::ExperimentInfo> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gemmi::CrystalInfo*, std::vector<gemmi::CrystalInfo> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/11/vector:72,
from /usr/include/simbody/SimTKcommon/internal/Array.h:39,
from /usr/include/simbody/SimTKcommon/basics.h:53,
from /usr/include/simbody/SimTKcommon.h:32,
from /<<PKGBUILDDIR>>/./include/molmodel/internal/common.h:40,
from /<<PKGBUILDDIR>>/./include/molmodel/internal/PDBReader.h:35,
from /<<PKGBUILDDIR>>/src/PDBReader.cpp:33:
/usr/include/c++/11/bits/vector.tcc: In function 'gemmi::Structure gemmi::impl::make_structure_from_block(const gemmi::cif::Block&)':
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gemmi::RefinementInfo*, std::vector<gemmi::RefinementInfo> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gemmi::ExperimentInfo*, std::vector<gemmi::ExperimentInfo> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gemmi::CrystalInfo*, std::vector<gemmi::CrystalInfo> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 13%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/TinkerAmber99.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/sharedTarget && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -fPIC -std=c++14 -MD -MT sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/TinkerAmber99.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/__/src/TinkerAmber99.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/__/src/TinkerAmber99.cpp.o -c /<<PKGBUILDDIR>>/src/TinkerAmber99.cpp
[ 14%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/VanderWallSphere.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/sharedTarget && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -fPIC -std=c++14 -MD -MT sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/VanderWallSphere.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/__/src/VanderWallSphere.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/__/src/VanderWallSphere.cpp.o -c /<<PKGBUILDDIR>>/src/VanderWallSphere.cpp
[ 15%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/VelocityRescalingThermostat.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/sharedTarget && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -fPIC -std=c++14 -MD -MT sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/VelocityRescalingThermostat.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/__/src/VelocityRescalingThermostat.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/__/src/VelocityRescalingThermostat.cpp.o -c /<<PKGBUILDDIR>>/src/VelocityRescalingThermostat.cpp
[ 15%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/VmdConnection.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/sharedTarget && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -fPIC -std=c++14 -MD -MT sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/VmdConnection.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/__/src/VmdConnection.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/__/src/VmdConnection.cpp.o -c /<<PKGBUILDDIR>>/src/VmdConnection.cpp
[ 16%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/CpuImplicitSolvent.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/sharedTarget && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -fPIC -std=c++14 -MD -MT sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/CpuImplicitSolvent.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/CpuImplicitSolvent.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/CpuImplicitSolvent.cpp.o -c /<<PKGBUILDDIR>>/src/gbsa/CpuImplicitSolvent.cpp
[ 17%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/CpuObc.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/sharedTarget && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -fPIC -std=c++14 -MD -MT sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/CpuObc.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/CpuObc.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/CpuObc.cpp.o -c /<<PKGBUILDDIR>>/src/gbsa/CpuObc.cpp
[ 18%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/ImplicitSolventParameters.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/sharedTarget && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -fPIC -std=c++14 -MD -MT sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/ImplicitSolventParameters.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/ImplicitSolventParameters.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/ImplicitSolventParameters.cpp.o -c /<<PKGBUILDDIR>>/src/gbsa/ImplicitSolventParameters.cpp
[ 19%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/ObcParameters.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/sharedTarget && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -fPIC -std=c++14 -MD -MT sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/ObcParameters.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/ObcParameters.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/ObcParameters.cpp.o -c /<<PKGBUILDDIR>>/src/gbsa/ObcParameters.cpp
[ 19%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/SimTKOpenMMCommon.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/sharedTarget && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -fPIC -std=c++14 -MD -MT sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/SimTKOpenMMCommon.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/SimTKOpenMMCommon.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/SimTKOpenMMCommon.cpp.o -c /<<PKGBUILDDIR>>/src/gbsa/SimTKOpenMMCommon.cpp
[ 20%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/SimTKOpenMMLog.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/sharedTarget && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -fPIC -std=c++14 -MD -MT sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/SimTKOpenMMLog.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/SimTKOpenMMLog.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/SimTKOpenMMLog.cpp.o -c /<<PKGBUILDDIR>>/src/gbsa/SimTKOpenMMLog.cpp
[ 21%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/SimTKOpenMMUtilities.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/sharedTarget && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -fPIC -std=c++14 -MD -MT sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/SimTKOpenMMUtilities.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/SimTKOpenMMUtilities.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/SimTKOpenMMUtilities.cpp.o -c /<<PKGBUILDDIR>>/src/gbsa/SimTKOpenMMUtilities.cpp
[ 22%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/cpuObcInterface.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/sharedTarget && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -fPIC -std=c++14 -MD -MT sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/cpuObcInterface.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/cpuObcInterface.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/cpuObcInterface.cpp.o -c /<<PKGBUILDDIR>>/src/gbsa/cpuObcInterface.cpp
[ 23%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/imd.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/sharedTarget && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -fPIC -std=c++14 -MD -MT sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/imd.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/__/src/imd.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/__/src/imd.cpp.o -c /<<PKGBUILDDIR>>/src/imd.cpp
[ 24%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/vmdsock.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/sharedTarget && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -fPIC -std=c++14 -MD -MT sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/vmdsock.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/__/src/vmdsock.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/__/src/vmdsock.cpp.o -c /<<PKGBUILDDIR>>/src/vmdsock.cpp
/usr/include/c++/11/bits/vector.tcc: In constructor 'SimTK::PDBReader::PDBReaderImpl::PDBReaderImpl(const string&, bool)':
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Repr::Atom*, std::vector<Repr::Atom> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 24%] Linking CXX shared library ../libSimTKmolmodel.so
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/sharedTarget && /usr/bin/cmake -E cmake_link_script CMakeFiles/SimTKmolmodel.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -Wl,-z,relro -shared -Wl,-soname,libSimTKmolmodel.so.3.0 -o ../libSimTKmolmodel.so.3.0 CMakeFiles/SimTKmolmodel.dir/__/src/About.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/AtomSubsystem.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/Biotype.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/BondGeometry.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/Compound.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/CompoundSystem.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/DuMMForceFieldSubsystem.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/DuMMForceFieldSubsystemRep.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/Element.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/MolecularMechanicsSystem.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/PDBReader.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/Pdb.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/PeriodicVmdReporter.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/Representation.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/RiboseMobilizer.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/TinkerAmber99.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/VanderWallSphere.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/VelocityRescalingThermostat.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/VmdConnection.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/CpuImplicitSolvent.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/CpuObc.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/ImplicitSolventParameters.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/ObcParameters.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/SimTKOpenMMCommon.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/SimTKOpenMMLog.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/SimTKOpenMMUtilities.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/cpuObcInterface.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/imd.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/vmdsock.cpp.o /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 -lz /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/sharedTarget && /usr/bin/cmake -E cmake_symlink_library ../libSimTKmolmodel.so.3.0 ../libSimTKmolmodel.so.3.0 ../libSimTKmolmodel.so
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 24%] Built target SimTKmolmodel
make -f tests/CMakeFiles/TestAtomTargetLocations.dir/build.make tests/CMakeFiles/TestAtomTargetLocations.dir/depend
make -f tests/CMakeFiles/TestBiopolymer.dir/build.make tests/CMakeFiles/TestBiopolymer.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestAtomTargetLocations.dir/DependInfo.cmake --color=
make -f tests/CMakeFiles/TestBiotypeSelfCode.dir/build.make tests/CMakeFiles/TestBiotypeSelfCode.dir/depend
make -f tests/CMakeFiles/TestBodyIds.dir/build.make tests/CMakeFiles/TestBodyIds.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestBiotypeSelfCode.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestBiopolymer.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestBodyIds.dir/DependInfo.cmake --color=
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make -f tests/CMakeFiles/TestAtomTargetLocations.dir/build.make tests/CMakeFiles/TestAtomTargetLocations.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
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make -f tests/CMakeFiles/TestBodyIds.dir/build.make tests/CMakeFiles/TestBodyIds.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 26%] Building CXX object tests/CMakeFiles/TestAtomTargetLocations.dir/TestAtomTargetLocations.cpp.o
[ 26%] Building CXX object tests/CMakeFiles/TestBiopolymer.dir/TestBiopolymer.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestBiopolymer.dir/TestBiopolymer.cpp.o -MF CMakeFiles/TestBiopolymer.dir/TestBiopolymer.cpp.o.d -o CMakeFiles/TestBiopolymer.dir/TestBiopolymer.cpp.o -c /<<PKGBUILDDIR>>/tests/TestBiopolymer.cpp
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestAtomTargetLocations.dir/TestAtomTargetLocations.cpp.o -MF CMakeFiles/TestAtomTargetLocations.dir/TestAtomTargetLocations.cpp.o.d -o CMakeFiles/TestAtomTargetLocations.dir/TestAtomTargetLocations.cpp.o -c /<<PKGBUILDDIR>>/tests/TestAtomTargetLocations.cpp
[ 26%] Building CXX object tests/CMakeFiles/TestBiotypeSelfCode.dir/TestBiotypeSelfCode.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestBiotypeSelfCode.dir/TestBiotypeSelfCode.cpp.o -MF CMakeFiles/TestBiotypeSelfCode.dir/TestBiotypeSelfCode.cpp.o.d -o CMakeFiles/TestBiotypeSelfCode.dir/TestBiotypeSelfCode.cpp.o -c /<<PKGBUILDDIR>>/tests/TestBiotypeSelfCode.cpp
[ 27%] Building CXX object tests/CMakeFiles/TestBodyIds.dir/TestBodyIds.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestBodyIds.dir/TestBodyIds.cpp.o -MF CMakeFiles/TestBodyIds.dir/TestBodyIds.cpp.o.d -o CMakeFiles/TestBodyIds.dir/TestBodyIds.cpp.o -c /<<PKGBUILDDIR>>/tests/TestBodyIds.cpp
[ 28%] Linking CXX executable ../TestBiotypeSelfCode
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestBiotypeSelfCode.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/TestBiotypeSelfCode.dir/TestBiotypeSelfCode.cpp.o -o ../TestBiotypeSelfCode -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm
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[ 28%] Built target TestBiotypeSelfCode
make -f tests/CMakeFiles/TestCompoundTransforms.dir/build.make tests/CMakeFiles/TestCompoundTransforms.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestCompoundTransforms.dir/DependInfo.cmake --color=
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[ 29%] Building CXX object tests/CMakeFiles/TestCompoundTransforms.dir/TestCompoundTransforms.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestCompoundTransforms.dir/TestCompoundTransforms.cpp.o -MF CMakeFiles/TestCompoundTransforms.dir/TestCompoundTransforms.cpp.o.d -o CMakeFiles/TestCompoundTransforms.dir/TestCompoundTransforms.cpp.o -c /<<PKGBUILDDIR>>/tests/TestCompoundTransforms.cpp
[ 30%] Linking CXX executable ../TestBiopolymer
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestBiopolymer.dir/link.txt --verbose=1
[ 31%] Linking CXX executable ../TestAtomTargetLocations
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestAtomTargetLocations.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/TestBiopolymer.dir/TestBiopolymer.cpp.o -o ../TestBiopolymer -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/TestAtomTargetLocations.dir/TestAtomTargetLocations.cpp.o -o ../TestAtomTargetLocations -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm
[ 32%] Linking CXX executable ../TestBodyIds
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestBodyIds.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/TestBodyIds.dir/TestBodyIds.cpp.o -o ../TestBodyIds -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm
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[ 32%] Built target TestBiopolymer
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cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestDihedrals2.dir/DependInfo.cmake --color=
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make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
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cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestDihedrals2.dir/TestDihedrals2.cpp.o -MF CMakeFiles/TestDihedrals2.dir/TestDihedrals2.cpp.o.d -o CMakeFiles/TestDihedrals2.dir/TestDihedrals2.cpp.o -c /<<PKGBUILDDIR>>/tests/TestDihedrals2.cpp
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make -f tests/CMakeFiles/TestDuMMForces.dir/build.make tests/CMakeFiles/TestDuMMForces.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 33%] Building CXX object tests/CMakeFiles/TestDuMMForces.dir/TestDuMMForces.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestDuMMForces.dir/TestDuMMForces.cpp.o -MF CMakeFiles/TestDuMMForces.dir/TestDuMMForces.cpp.o.d -o CMakeFiles/TestDuMMForces.dir/TestDuMMForces.cpp.o -c /<<PKGBUILDDIR>>/tests/TestDuMMForces.cpp
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 33%] Built target TestBodyIds
make -f tests/CMakeFiles/TestEthane.dir/build.make tests/CMakeFiles/TestEthane.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestEthane.dir/DependInfo.cmake --color=
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make -f tests/CMakeFiles/TestEthane.dir/build.make tests/CMakeFiles/TestEthane.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 34%] Building CXX object tests/CMakeFiles/TestEthane.dir/TestEthane.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestEthane.dir/TestEthane.cpp.o -MF CMakeFiles/TestEthane.dir/TestEthane.cpp.o.d -o CMakeFiles/TestEthane.dir/TestEthane.cpp.o -c /<<PKGBUILDDIR>>/tests/TestEthane.cpp
[ 35%] Linking CXX executable ../TestCompoundTransforms
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCompoundTransforms.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/TestCompoundTransforms.dir/TestCompoundTransforms.cpp.o -o ../TestCompoundTransforms -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 35%] Built target TestCompoundTransforms
make -f tests/CMakeFiles/TestFitMagnesiums.dir/build.make tests/CMakeFiles/TestFitMagnesiums.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestFitMagnesiums.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f tests/CMakeFiles/TestFitMagnesiums.dir/build.make tests/CMakeFiles/TestFitMagnesiums.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 36%] Building CXX object tests/CMakeFiles/TestFitMagnesiums.dir/TestFitMagnesiums.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestFitMagnesiums.dir/TestFitMagnesiums.cpp.o -MF CMakeFiles/TestFitMagnesiums.dir/TestFitMagnesiums.cpp.o.d -o CMakeFiles/TestFitMagnesiums.dir/TestFitMagnesiums.cpp.o -c /<<PKGBUILDDIR>>/tests/TestFitMagnesiums.cpp
[ 37%] Linking CXX executable ../TestDihedrals2
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestDihedrals2.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/TestDihedrals2.dir/TestDihedrals2.cpp.o -o ../TestDihedrals2 -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 37%] Built target TestDihedrals2
make -f tests/CMakeFiles/TestForeignBodyIds.dir/build.make tests/CMakeFiles/TestForeignBodyIds.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestForeignBodyIds.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f tests/CMakeFiles/TestForeignBodyIds.dir/build.make tests/CMakeFiles/TestForeignBodyIds.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 38%] Building CXX object tests/CMakeFiles/TestForeignBodyIds.dir/TestForeignBodyIds.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestForeignBodyIds.dir/TestForeignBodyIds.cpp.o -MF CMakeFiles/TestForeignBodyIds.dir/TestForeignBodyIds.cpp.o.d -o CMakeFiles/TestForeignBodyIds.dir/TestForeignBodyIds.cpp.o -c /<<PKGBUILDDIR>>/tests/TestForeignBodyIds.cpp
[ 39%] Linking CXX executable ../TestDuMMForces
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestDuMMForces.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/TestDuMMForces.dir/TestDuMMForces.cpp.o -o ../TestDuMMForces -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 39%] Built target TestDuMMForces
make -f tests/CMakeFiles/TestGbsa.dir/build.make tests/CMakeFiles/TestGbsa.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestGbsa.dir/DependInfo.cmake --color=
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make -f tests/CMakeFiles/TestGbsa.dir/build.make tests/CMakeFiles/TestGbsa.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 40%] Building CXX object tests/CMakeFiles/TestGbsa.dir/TestGbsa.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestGbsa.dir/TestGbsa.cpp.o -MF CMakeFiles/TestGbsa.dir/TestGbsa.cpp.o.d -o CMakeFiles/TestGbsa.dir/TestGbsa.cpp.o -c /<<PKGBUILDDIR>>/tests/TestGbsa.cpp
[ 40%] Linking CXX executable ../TestEthane
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestEthane.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/TestEthane.dir/TestEthane.cpp.o -o ../TestEthane -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 40%] Built target TestEthane
make -f tests/CMakeFiles/TestGetAtomName.dir/build.make tests/CMakeFiles/TestGetAtomName.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestGetAtomName.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f tests/CMakeFiles/TestGetAtomName.dir/build.make tests/CMakeFiles/TestGetAtomName.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 41%] Building CXX object tests/CMakeFiles/TestGetAtomName.dir/TestGetAtomName.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestGetAtomName.dir/TestGetAtomName.cpp.o -MF CMakeFiles/TestGetAtomName.dir/TestGetAtomName.cpp.o.d -o CMakeFiles/TestGetAtomName.dir/TestGetAtomName.cpp.o -c /<<PKGBUILDDIR>>/tests/TestGetAtomName.cpp
[ 42%] Linking CXX executable ../TestForeignBodyIds
[ 42%] Linking CXX executable ../TestFitMagnesiums
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestFitMagnesiums.dir/link.txt --verbose=1
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestForeignBodyIds.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/TestFitMagnesiums.dir/TestFitMagnesiums.cpp.o -o ../TestFitMagnesiums -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/TestForeignBodyIds.dir/TestForeignBodyIds.cpp.o -o ../TestForeignBodyIds -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 42%] Built target TestForeignBodyIds
[ 42%] Built target TestFitMagnesiums
make -f tests/CMakeFiles/TestLoadPdb.dir/build.make tests/CMakeFiles/TestLoadPdb.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestLoadPdb.dir/DependInfo.cmake --color=
make -f tests/CMakeFiles/TestLoadVariantRnaAtomNames.dir/build.make tests/CMakeFiles/TestLoadVariantRnaAtomNames.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestLoadVariantRnaAtomNames.dir/DependInfo.cmake --color=
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make -f tests/CMakeFiles/TestLoadPdb.dir/build.make tests/CMakeFiles/TestLoadPdb.dir/build
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f tests/CMakeFiles/TestLoadVariantRnaAtomNames.dir/build.make tests/CMakeFiles/TestLoadVariantRnaAtomNames.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 43%] Building CXX object tests/CMakeFiles/TestLoadPdb.dir/TestLoadPdb.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestLoadPdb.dir/TestLoadPdb.cpp.o -MF CMakeFiles/TestLoadPdb.dir/TestLoadPdb.cpp.o.d -o CMakeFiles/TestLoadPdb.dir/TestLoadPdb.cpp.o -c /<<PKGBUILDDIR>>/tests/TestLoadPdb.cpp
[ 44%] Building CXX object tests/CMakeFiles/TestLoadVariantRnaAtomNames.dir/TestLoadVariantRnaAtomNames.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestLoadVariantRnaAtomNames.dir/TestLoadVariantRnaAtomNames.cpp.o -MF CMakeFiles/TestLoadVariantRnaAtomNames.dir/TestLoadVariantRnaAtomNames.cpp.o.d -o CMakeFiles/TestLoadVariantRnaAtomNames.dir/TestLoadVariantRnaAtomNames.cpp.o -c /<<PKGBUILDDIR>>/tests/TestLoadVariantRnaAtomNames.cpp
[ 45%] Linking CXX executable ../TestGbsa
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestGbsa.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/TestGbsa.dir/TestGbsa.cpp.o -o ../TestGbsa -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm
[ 46%] Linking CXX executable ../TestGetAtomName
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestGetAtomName.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/TestGetAtomName.dir/TestGetAtomName.cpp.o -o ../TestGetAtomName -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 46%] Built target TestGbsa
make -f tests/CMakeFiles/TestLoneAtomCoordinates.dir/build.make tests/CMakeFiles/TestLoneAtomCoordinates.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestLoneAtomCoordinates.dir/DependInfo.cmake --color=
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make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 47%] Building CXX object tests/CMakeFiles/TestLoneAtomCoordinates.dir/TestLoneAtomCoordinates.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestLoneAtomCoordinates.dir/TestLoneAtomCoordinates.cpp.o -MF CMakeFiles/TestLoneAtomCoordinates.dir/TestLoneAtomCoordinates.cpp.o.d -o CMakeFiles/TestLoneAtomCoordinates.dir/TestLoneAtomCoordinates.cpp.o -c /<<PKGBUILDDIR>>/tests/TestLoneAtomCoordinates.cpp
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 47%] Built target TestGetAtomName
make -f tests/CMakeFiles/TestMethaneCartesian.dir/build.make tests/CMakeFiles/TestMethaneCartesian.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestMethaneCartesian.dir/DependInfo.cmake --color=
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make -f tests/CMakeFiles/TestMethaneCartesian.dir/build.make tests/CMakeFiles/TestMethaneCartesian.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 48%] Building CXX object tests/CMakeFiles/TestMethaneCartesian.dir/TestMethaneCartesian.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestMethaneCartesian.dir/TestMethaneCartesian.cpp.o -MF CMakeFiles/TestMethaneCartesian.dir/TestMethaneCartesian.cpp.o.d -o CMakeFiles/TestMethaneCartesian.dir/TestMethaneCartesian.cpp.o -c /<<PKGBUILDDIR>>/tests/TestMethaneCartesian.cpp
[ 50%] Linking CXX executable ../TestLoneAtomCoordinates
[ 50%] Linking CXX executable ../TestMethaneCartesian
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestMethaneCartesian.dir/link.txt --verbose=1
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestLoneAtomCoordinates.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/TestLoneAtomCoordinates.dir/TestLoneAtomCoordinates.cpp.o -o ../TestLoneAtomCoordinates -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/TestMethaneCartesian.dir/TestMethaneCartesian.cpp.o -o ../TestMethaneCartesian -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 50%] Built target TestMethaneCartesian
[ 50%] Built target TestLoneAtomCoordinates
make -f tests/CMakeFiles/TestMethanol.dir/build.make tests/CMakeFiles/TestMethanol.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestMethanol.dir/DependInfo.cmake --color=
make -f tests/CMakeFiles/TestMgSolvationEnergy.dir/build.make tests/CMakeFiles/TestMgSolvationEnergy.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestMgSolvationEnergy.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f tests/CMakeFiles/TestMethanol.dir/build.make tests/CMakeFiles/TestMethanol.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f tests/CMakeFiles/TestMgSolvationEnergy.dir/build.make tests/CMakeFiles/TestMgSolvationEnergy.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 51%] Building CXX object tests/CMakeFiles/TestMethanol.dir/TestMethanol.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestMethanol.dir/TestMethanol.cpp.o -MF CMakeFiles/TestMethanol.dir/TestMethanol.cpp.o.d -o CMakeFiles/TestMethanol.dir/TestMethanol.cpp.o -c /<<PKGBUILDDIR>>/tests/TestMethanol.cpp
[ 51%] Building CXX object tests/CMakeFiles/TestMgSolvationEnergy.dir/TestMgSolvationEnergy.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestMgSolvationEnergy.dir/TestMgSolvationEnergy.cpp.o -MF CMakeFiles/TestMgSolvationEnergy.dir/TestMgSolvationEnergy.cpp.o.d -o CMakeFiles/TestMgSolvationEnergy.dir/TestMgSolvationEnergy.cpp.o -c /<<PKGBUILDDIR>>/tests/TestMgSolvationEnergy.cpp
[ 51%] Linking CXX executable ../TestLoadPdb
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestLoadPdb.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/TestLoadPdb.dir/TestLoadPdb.cpp.o -o ../TestLoadPdb -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm
[ 52%] Linking CXX executable ../TestLoadVariantRnaAtomNames
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestLoadVariantRnaAtomNames.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/TestLoadVariantRnaAtomNames.dir/TestLoadVariantRnaAtomNames.cpp.o -o ../TestLoadVariantRnaAtomNames -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 52%] Built target TestLoadPdb
make -f tests/CMakeFiles/TestNoseHooverThermostat.dir/build.make tests/CMakeFiles/TestNoseHooverThermostat.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestNoseHooverThermostat.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f tests/CMakeFiles/TestNoseHooverThermostat.dir/build.make tests/CMakeFiles/TestNoseHooverThermostat.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 53%] Building CXX object tests/CMakeFiles/TestNoseHooverThermostat.dir/TestNoseHooverThermostat.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestNoseHooverThermostat.dir/TestNoseHooverThermostat.cpp.o -MF CMakeFiles/TestNoseHooverThermostat.dir/TestNoseHooverThermostat.cpp.o.d -o CMakeFiles/TestNoseHooverThermostat.dir/TestNoseHooverThermostat.cpp.o -c /<<PKGBUILDDIR>>/tests/TestNoseHooverThermostat.cpp
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 53%] Built target TestLoadVariantRnaAtomNames
make -f tests/CMakeFiles/TestNucleotide2.dir/build.make tests/CMakeFiles/TestNucleotide2.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestNucleotide2.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f tests/CMakeFiles/TestNucleotide2.dir/build.make tests/CMakeFiles/TestNucleotide2.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 54%] Building CXX object tests/CMakeFiles/TestNucleotide2.dir/TestNucleotide2.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestNucleotide2.dir/TestNucleotide2.cpp.o -MF CMakeFiles/TestNucleotide2.dir/TestNucleotide2.cpp.o.d -o CMakeFiles/TestNucleotide2.dir/TestNucleotide2.cpp.o -c /<<PKGBUILDDIR>>/tests/TestNucleotide2.cpp
[ 56%] Linking CXX executable ../TestMgSolvationEnergy
[ 56%] Linking CXX executable ../TestMethanol
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestMgSolvationEnergy.dir/link.txt --verbose=1
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestMethanol.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/TestMgSolvationEnergy.dir/TestMgSolvationEnergy.cpp.o -o ../TestMgSolvationEnergy -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/TestMethanol.dir/TestMethanol.cpp.o -o ../TestMethanol -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 56%] Built target TestMethanol
[ 56%] Built target TestMgSolvationEnergy
make -f tests/CMakeFiles/TestOxygenMolecule.dir/build.make tests/CMakeFiles/TestOxygenMolecule.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestOxygenMolecule.dir/DependInfo.cmake --color=
make -f tests/CMakeFiles/TestPartitioner.dir/build.make tests/CMakeFiles/TestPartitioner.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestPartitioner.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f tests/CMakeFiles/TestOxygenMolecule.dir/build.make tests/CMakeFiles/TestOxygenMolecule.dir/build
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f tests/CMakeFiles/TestPartitioner.dir/build.make tests/CMakeFiles/TestPartitioner.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 57%] Building CXX object tests/CMakeFiles/TestPartitioner.dir/TestPartitioner.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestPartitioner.dir/TestPartitioner.cpp.o -MF CMakeFiles/TestPartitioner.dir/TestPartitioner.cpp.o.d -o CMakeFiles/TestPartitioner.dir/TestPartitioner.cpp.o -c /<<PKGBUILDDIR>>/tests/TestPartitioner.cpp
[ 58%] Building CXX object tests/CMakeFiles/TestOxygenMolecule.dir/TestOxygenMolecule.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestOxygenMolecule.dir/TestOxygenMolecule.cpp.o -MF CMakeFiles/TestOxygenMolecule.dir/TestOxygenMolecule.cpp.o.d -o CMakeFiles/TestOxygenMolecule.dir/TestOxygenMolecule.cpp.o -c /<<PKGBUILDDIR>>/tests/TestOxygenMolecule.cpp
[ 59%] Linking CXX executable ../TestNoseHooverThermostat
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestNoseHooverThermostat.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/TestNoseHooverThermostat.dir/TestNoseHooverThermostat.cpp.o -o ../TestNoseHooverThermostat -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm
[ 59%] Linking CXX executable ../TestNucleotide2
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestNucleotide2.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/TestNucleotide2.dir/TestNucleotide2.cpp.o -o ../TestNucleotide2 -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 59%] Built target TestNoseHooverThermostat
make -f tests/CMakeFiles/TestPartitionerDihedrals.dir/build.make tests/CMakeFiles/TestPartitionerDihedrals.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestPartitionerDihedrals.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f tests/CMakeFiles/TestPartitionerDihedrals.dir/build.make tests/CMakeFiles/TestPartitionerDihedrals.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 60%] Building CXX object tests/CMakeFiles/TestPartitionerDihedrals.dir/TestPartitionerDihedrals.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestPartitionerDihedrals.dir/TestPartitionerDihedrals.cpp.o -MF CMakeFiles/TestPartitionerDihedrals.dir/TestPartitionerDihedrals.cpp.o.d -o CMakeFiles/TestPartitionerDihedrals.dir/TestPartitionerDihedrals.cpp.o -c /<<PKGBUILDDIR>>/tests/TestPartitionerDihedrals.cpp
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 60%] Built target TestNucleotide2
make -f tests/CMakeFiles/TestPdb.dir/build.make tests/CMakeFiles/TestPdb.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestPdb.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f tests/CMakeFiles/TestPdb.dir/build.make tests/CMakeFiles/TestPdb.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 61%] Building CXX object tests/CMakeFiles/TestPdb.dir/TestPdb.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestPdb.dir/TestPdb.cpp.o -MF CMakeFiles/TestPdb.dir/TestPdb.cpp.o.d -o CMakeFiles/TestPdb.dir/TestPdb.cpp.o -c /<<PKGBUILDDIR>>/tests/TestPdb.cpp
[ 62%] Linking CXX executable ../TestOxygenMolecule
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestOxygenMolecule.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/TestOxygenMolecule.dir/TestOxygenMolecule.cpp.o -o ../TestOxygenMolecule -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm
[ 62%] Linking CXX executable ../TestPartitionerDihedrals
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestPartitionerDihedrals.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/TestPartitionerDihedrals.dir/TestPartitionerDihedrals.cpp.o -o ../TestPartitionerDihedrals -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 62%] Built target TestOxygenMolecule
make -f tests/CMakeFiles/TestPositiveControl.dir/build.make tests/CMakeFiles/TestPositiveControl.dir/depend
[ 62%] Built target TestPartitionerDihedrals
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestPositiveControl.dir/DependInfo.cmake --color=
make -f tests/CMakeFiles/TestProtein.dir/build.make tests/CMakeFiles/TestProtein.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestProtein.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f tests/CMakeFiles/TestPositiveControl.dir/build.make tests/CMakeFiles/TestPositiveControl.dir/build
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f tests/CMakeFiles/TestProtein.dir/build.make tests/CMakeFiles/TestProtein.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 63%] Building CXX object tests/CMakeFiles/TestPositiveControl.dir/TestPositiveControl.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestPositiveControl.dir/TestPositiveControl.cpp.o -MF CMakeFiles/TestPositiveControl.dir/TestPositiveControl.cpp.o.d -o CMakeFiles/TestPositiveControl.dir/TestPositiveControl.cpp.o -c /<<PKGBUILDDIR>>/tests/TestPositiveControl.cpp
[ 63%] Building CXX object tests/CMakeFiles/TestProtein.dir/TestProtein.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestProtein.dir/TestProtein.cpp.o -MF CMakeFiles/TestProtein.dir/TestProtein.cpp.o.d -o CMakeFiles/TestProtein.dir/TestProtein.cpp.o -c /<<PKGBUILDDIR>>/tests/TestProtein.cpp
[ 64%] Linking CXX executable ../TestPositiveControl
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestPositiveControl.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/TestPositiveControl.dir/TestPositiveControl.cpp.o -o ../TestPositiveControl -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 64%] Built target TestPositiveControl
make -f tests/CMakeFiles/TestProteinDihedrals.dir/build.make tests/CMakeFiles/TestProteinDihedrals.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestProteinDihedrals.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f tests/CMakeFiles/TestProteinDihedrals.dir/build.make tests/CMakeFiles/TestProteinDihedrals.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 65%] Building CXX object tests/CMakeFiles/TestProteinDihedrals.dir/TestProteinDihedrals.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestProteinDihedrals.dir/TestProteinDihedrals.cpp.o -MF CMakeFiles/TestProteinDihedrals.dir/TestProteinDihedrals.cpp.o.d -o CMakeFiles/TestProteinDihedrals.dir/TestProteinDihedrals.cpp.o -c /<<PKGBUILDDIR>>/tests/TestProteinDihedrals.cpp
[ 66%] Linking CXX executable ../TestPdb
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestPdb.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/TestPdb.dir/TestPdb.cpp.o -o ../TestPdb -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 66%] Built target TestPdb
make -f tests/CMakeFiles/TestRiboseMobilizer.dir/build.make tests/CMakeFiles/TestRiboseMobilizer.dir/depend
[ 67%] Linking CXX executable ../TestPartitioner
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestRiboseMobilizer.dir/DependInfo.cmake --color=
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestPartitioner.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/TestPartitioner.dir/TestPartitioner.cpp.o -o ../TestPartitioner -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f tests/CMakeFiles/TestRiboseMobilizer.dir/build.make tests/CMakeFiles/TestRiboseMobilizer.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 68%] Building CXX object tests/CMakeFiles/TestRiboseMobilizer.dir/TestRiboseMobilizer.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestRiboseMobilizer.dir/TestRiboseMobilizer.cpp.o -MF CMakeFiles/TestRiboseMobilizer.dir/TestRiboseMobilizer.cpp.o.d -o CMakeFiles/TestRiboseMobilizer.dir/TestRiboseMobilizer.cpp.o -c /<<PKGBUILDDIR>>/tests/TestRiboseMobilizer.cpp
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 68%] Built target TestPartitioner
make -f tests/CMakeFiles/TestRna.dir/build.make tests/CMakeFiles/TestRna.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestRna.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f tests/CMakeFiles/TestRna.dir/build.make tests/CMakeFiles/TestRna.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 68%] Building CXX object tests/CMakeFiles/TestRna.dir/TestRna.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestRna.dir/TestRna.cpp.o -MF CMakeFiles/TestRna.dir/TestRna.cpp.o.d -o CMakeFiles/TestRna.dir/TestRna.cpp.o -c /<<PKGBUILDDIR>>/tests/TestRna.cpp
In file included from /usr/include/c++/11/vector:72,
from /usr/include/simbody/SimTKcommon/internal/Array.h:39,
from /usr/include/simbody/SimTKcommon/basics.h:53,
from /usr/include/simbody/SimTKcommon.h:32,
from /usr/include/simbody/Simbody.h:38,
from /<<PKGBUILDDIR>>/./include/SimTKmolmodel.h:47,
from /<<PKGBUILDDIR>>/tests/TestRiboseMobilizer.cpp:1:
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function 'virtual void PeriodicTorsionMeasurer::handleEvent(const SimTK::State&) const':
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 70%] Linking CXX executable ../TestRiboseMobilizer
[ 70%] Linking CXX executable ../TestProteinDihedrals
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestRiboseMobilizer.dir/link.txt --verbose=1
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestProteinDihedrals.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/TestProteinDihedrals.dir/TestProteinDihedrals.cpp.o -o ../TestProteinDihedrals -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/TestRiboseMobilizer.dir/TestRiboseMobilizer.cpp.o -o ../TestRiboseMobilizer -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 70%] Built target TestRiboseMobilizer
[ 70%] Built target TestProteinDihedrals
make -f tests/CMakeFiles/TestSanityDuMM.dir/build.make tests/CMakeFiles/TestSanityDuMM.dir/depend
make -f tests/CMakeFiles/TestSerine.dir/build.make tests/CMakeFiles/TestSerine.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestSerine.dir/DependInfo.cmake --color=
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestSanityDuMM.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f tests/CMakeFiles/TestSanityDuMM.dir/build.make tests/CMakeFiles/TestSanityDuMM.dir/build
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f tests/CMakeFiles/TestSerine.dir/build.make tests/CMakeFiles/TestSerine.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 72%] Building CXX object tests/CMakeFiles/TestSanityDuMM.dir/TestSanityDuMM.cpp.o
[ 72%] Building CXX object tests/CMakeFiles/TestSerine.dir/TestSerine.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestSerine.dir/TestSerine.cpp.o -MF CMakeFiles/TestSerine.dir/TestSerine.cpp.o.d -o CMakeFiles/TestSerine.dir/TestSerine.cpp.o -c /<<PKGBUILDDIR>>/tests/TestSerine.cpp
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestSanityDuMM.dir/TestSanityDuMM.cpp.o -MF CMakeFiles/TestSanityDuMM.dir/TestSanityDuMM.cpp.o.d -o CMakeFiles/TestSanityDuMM.dir/TestSanityDuMM.cpp.o -c /<<PKGBUILDDIR>>/tests/TestSanityDuMM.cpp
[ 73%] Linking CXX executable ../TestProtein
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestProtein.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/TestProtein.dir/TestProtein.cpp.o -o ../TestProtein -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 73%] Built target TestProtein
make -f tests/CMakeFiles/TestSetTorsion.dir/build.make tests/CMakeFiles/TestSetTorsion.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestSetTorsion.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f tests/CMakeFiles/TestSetTorsion.dir/build.make tests/CMakeFiles/TestSetTorsion.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 74%] Building CXX object tests/CMakeFiles/TestSetTorsion.dir/TestSetTorsion.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestSetTorsion.dir/TestSetTorsion.cpp.o -MF CMakeFiles/TestSetTorsion.dir/TestSetTorsion.cpp.o.d -o CMakeFiles/TestSetTorsion.dir/TestSetTorsion.cpp.o -c /<<PKGBUILDDIR>>/tests/TestSetTorsion.cpp
[ 75%] Linking CXX executable ../TestRna
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestRna.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/TestRna.dir/TestRna.cpp.o -o ../TestRna -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 75%] Built target TestRna
make -f tests/CMakeFiles/TestShortPdbLines.dir/build.make tests/CMakeFiles/TestShortPdbLines.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestShortPdbLines.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f tests/CMakeFiles/TestShortPdbLines.dir/build.make tests/CMakeFiles/TestShortPdbLines.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 76%] Building CXX object tests/CMakeFiles/TestShortPdbLines.dir/TestShortPdbLines.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestShortPdbLines.dir/TestShortPdbLines.cpp.o -MF CMakeFiles/TestShortPdbLines.dir/TestShortPdbLines.cpp.o.d -o CMakeFiles/TestShortPdbLines.dir/TestShortPdbLines.cpp.o -c /<<PKGBUILDDIR>>/tests/TestShortPdbLines.cpp
[ 77%] Linking CXX executable ../TestSanityDuMM
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSanityDuMM.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/TestSanityDuMM.dir/TestSanityDuMM.cpp.o -o ../TestSanityDuMM -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 77%] Built target TestSanityDuMM
make -f tests/CMakeFiles/TestTinkerAmber.dir/build.make tests/CMakeFiles/TestTinkerAmber.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestTinkerAmber.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f tests/CMakeFiles/TestTinkerAmber.dir/build.make tests/CMakeFiles/TestTinkerAmber.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 77%] Building CXX object tests/CMakeFiles/TestTinkerAmber.dir/TestTinkerAmber.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestTinkerAmber.dir/TestTinkerAmber.cpp.o -MF CMakeFiles/TestTinkerAmber.dir/TestTinkerAmber.cpp.o.d -o CMakeFiles/TestTinkerAmber.dir/TestTinkerAmber.cpp.o -c /<<PKGBUILDDIR>>/tests/TestTinkerAmber.cpp
[ 77%] Linking CXX executable ../TestSerine
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerine.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/TestSerine.dir/TestSerine.cpp.o -o ../TestSerine -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm
[ 77%] Linking CXX executable ../TestShortPdbLines
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestShortPdbLines.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/TestShortPdbLines.dir/TestShortPdbLines.cpp.o -o ../TestShortPdbLines -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 77%] Built target TestSerine
make -f tests/CMakeFiles/TestTorsionPartitioner.dir/build.make tests/CMakeFiles/TestTorsionPartitioner.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestTorsionPartitioner.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f tests/CMakeFiles/TestTorsionPartitioner.dir/build.make tests/CMakeFiles/TestTorsionPartitioner.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 78%] Building CXX object tests/CMakeFiles/TestTorsionPartitioner.dir/TestTorsionPartitioner.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestTorsionPartitioner.dir/TestTorsionPartitioner.cpp.o -MF CMakeFiles/TestTorsionPartitioner.dir/TestTorsionPartitioner.cpp.o.d -o CMakeFiles/TestTorsionPartitioner.dir/TestTorsionPartitioner.cpp.o -c /<<PKGBUILDDIR>>/tests/TestTorsionPartitioner.cpp
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 78%] Built target TestShortPdbLines
make -f tests/CMakeFiles/TestVelocityRescalingThermostat.dir/build.make tests/CMakeFiles/TestVelocityRescalingThermostat.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestVelocityRescalingThermostat.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f tests/CMakeFiles/TestVelocityRescalingThermostat.dir/build.make tests/CMakeFiles/TestVelocityRescalingThermostat.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 79%] Building CXX object tests/CMakeFiles/TestVelocityRescalingThermostat.dir/TestVelocityRescalingThermostat.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestVelocityRescalingThermostat.dir/TestVelocityRescalingThermostat.cpp.o -MF CMakeFiles/TestVelocityRescalingThermostat.dir/TestVelocityRescalingThermostat.cpp.o.d -o CMakeFiles/TestVelocityRescalingThermostat.dir/TestVelocityRescalingThermostat.cpp.o -c /<<PKGBUILDDIR>>/tests/TestVelocityRescalingThermostat.cpp
[ 80%] Linking CXX executable ../TestSetTorsion
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSetTorsion.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/TestSetTorsion.dir/TestSetTorsion.cpp.o -o ../TestSetTorsion -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 80%] Built target TestSetTorsion
make -f tests/CMakeFiles/TestWriteDefaultPdb.dir/build.make tests/CMakeFiles/TestWriteDefaultPdb.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestWriteDefaultPdb.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f tests/CMakeFiles/TestWriteDefaultPdb.dir/build.make tests/CMakeFiles/TestWriteDefaultPdb.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 80%] Building CXX object tests/CMakeFiles/TestWriteDefaultPdb.dir/TestWriteDefaultPdb.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestWriteDefaultPdb.dir/TestWriteDefaultPdb.cpp.o -MF CMakeFiles/TestWriteDefaultPdb.dir/TestWriteDefaultPdb.cpp.o.d -o CMakeFiles/TestWriteDefaultPdb.dir/TestWriteDefaultPdb.cpp.o -c /<<PKGBUILDDIR>>/tests/TestWriteDefaultPdb.cpp
[ 81%] Linking CXX executable ../TestTinkerAmber
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestTinkerAmber.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/TestTinkerAmber.dir/TestTinkerAmber.cpp.o -o ../TestTinkerAmber -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 81%] Built target TestTinkerAmber
make -f tests/CMakeFiles/TestWriteSimtimePdb.dir/build.make tests/CMakeFiles/TestWriteSimtimePdb.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestWriteSimtimePdb.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f tests/CMakeFiles/TestWriteSimtimePdb.dir/build.make tests/CMakeFiles/TestWriteSimtimePdb.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 82%] Building CXX object tests/CMakeFiles/TestWriteSimtimePdb.dir/TestWriteSimtimePdb.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/CMakeFiles/TestWriteSimtimePdb.dir/TestWriteSimtimePdb.cpp.o -MF CMakeFiles/TestWriteSimtimePdb.dir/TestWriteSimtimePdb.cpp.o.d -o CMakeFiles/TestWriteSimtimePdb.dir/TestWriteSimtimePdb.cpp.o -c /<<PKGBUILDDIR>>/tests/TestWriteSimtimePdb.cpp
[ 83%] Linking CXX executable ../TestVelocityRescalingThermostat
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestVelocityRescalingThermostat.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/TestVelocityRescalingThermostat.dir/TestVelocityRescalingThermostat.cpp.o -o ../TestVelocityRescalingThermostat -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 83%] Built target TestVelocityRescalingThermostat
make -f tests/adhoc/CMakeFiles/RemoveMassCenterDrift.dir/build.make tests/adhoc/CMakeFiles/RemoveMassCenterDrift.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/tests/adhoc /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/adhoc /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/adhoc/CMakeFiles/RemoveMassCenterDrift.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f tests/adhoc/CMakeFiles/RemoveMassCenterDrift.dir/build.make tests/adhoc/CMakeFiles/RemoveMassCenterDrift.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 83%] Building CXX object tests/adhoc/CMakeFiles/RemoveMassCenterDrift.dir/RemoveMassCenterDrift.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/adhoc && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/adhoc/CMakeFiles/RemoveMassCenterDrift.dir/RemoveMassCenterDrift.cpp.o -MF CMakeFiles/RemoveMassCenterDrift.dir/RemoveMassCenterDrift.cpp.o.d -o CMakeFiles/RemoveMassCenterDrift.dir/RemoveMassCenterDrift.cpp.o -c /<<PKGBUILDDIR>>/tests/adhoc/RemoveMassCenterDrift.cpp
[ 84%] Linking CXX executable ../TestTorsionPartitioner
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestTorsionPartitioner.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/TestTorsionPartitioner.dir/TestTorsionPartitioner.cpp.o -o ../TestTorsionPartitioner -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 84%] Built target TestTorsionPartitioner
make -f tests/adhoc/CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/build.make tests/adhoc/CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/tests/adhoc /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/adhoc /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/adhoc/CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f tests/adhoc/CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/build.make tests/adhoc/CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 85%] Building CXX object tests/adhoc/CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/RemoveMassCenterDriftWithOptimizer.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/adhoc && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/adhoc/CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/RemoveMassCenterDriftWithOptimizer.cpp.o -MF CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/RemoveMassCenterDriftWithOptimizer.cpp.o.d -o CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/RemoveMassCenterDriftWithOptimizer.cpp.o -c /<<PKGBUILDDIR>>/tests/adhoc/RemoveMassCenterDriftWithOptimizer.cpp
[ 86%] Linking CXX executable ../TestWriteDefaultPdb
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestWriteDefaultPdb.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/TestWriteDefaultPdb.dir/TestWriteDefaultPdb.cpp.o -o ../TestWriteDefaultPdb -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 86%] Built target TestWriteDefaultPdb
make -f tests/adhoc/CMakeFiles/TestEthaneFromSimbody.dir/build.make tests/adhoc/CMakeFiles/TestEthaneFromSimbody.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/tests/adhoc /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/adhoc /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/adhoc/CMakeFiles/TestEthaneFromSimbody.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f tests/adhoc/CMakeFiles/TestEthaneFromSimbody.dir/build.make tests/adhoc/CMakeFiles/TestEthaneFromSimbody.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 87%] Building CXX object tests/adhoc/CMakeFiles/TestEthaneFromSimbody.dir/TestEthaneFromSimbody.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/adhoc && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/adhoc/CMakeFiles/TestEthaneFromSimbody.dir/TestEthaneFromSimbody.cpp.o -MF CMakeFiles/TestEthaneFromSimbody.dir/TestEthaneFromSimbody.cpp.o.d -o CMakeFiles/TestEthaneFromSimbody.dir/TestEthaneFromSimbody.cpp.o -c /<<PKGBUILDDIR>>/tests/adhoc/TestEthaneFromSimbody.cpp
[ 89%] Linking CXX executable ../../RemoveMassCenterDrift
[ 89%] Linking CXX executable ../TestWriteSimtimePdb
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestWriteSimtimePdb.dir/link.txt --verbose=1
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/adhoc && /usr/bin/cmake -E cmake_link_script CMakeFiles/RemoveMassCenterDrift.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/TestWriteSimtimePdb.dir/TestWriteSimtimePdb.cpp.o -o ../TestWriteSimtimePdb -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/RemoveMassCenterDrift.dir/RemoveMassCenterDrift.cpp.o -o ../../RemoveMassCenterDrift -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf ../../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm
[ 90%] Linking CXX executable ../../TestEthaneFromSimbody
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/adhoc && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestEthaneFromSimbody.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/TestEthaneFromSimbody.dir/TestEthaneFromSimbody.cpp.o -o ../../TestEthaneFromSimbody -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf ../../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm
[ 91%] Linking CXX executable ../../RemoveMassCenterDriftWithOptimizer
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/adhoc && /usr/bin/cmake -E cmake_link_script CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/RemoveMassCenterDriftWithOptimizer.cpp.o -o ../../RemoveMassCenterDriftWithOptimizer -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf ../../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 91%] Built target TestEthaneFromSimbody
make -f tests/adhoc/CMakeFiles/TestMemoryUse.dir/build.make tests/adhoc/CMakeFiles/TestMemoryUse.dir/depend
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/tests/adhoc /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/adhoc /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/adhoc/CMakeFiles/TestMemoryUse.dir/DependInfo.cmake --color=
[ 91%] Built target TestWriteSimtimePdb
make -f tests/adhoc/CMakeFiles/TestSerineWithViz.dir/build.make tests/adhoc/CMakeFiles/TestSerineWithViz.dir/depend
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f tests/adhoc/CMakeFiles/TestMemoryUse.dir/build.make tests/adhoc/CMakeFiles/TestMemoryUse.dir/build
[ 91%] Built target RemoveMassCenterDrift
[ 91%] Built target RemoveMassCenterDriftWithOptimizer
make -f tests/adhoc/CMakeFiles/TestSimpleProtein.dir/build.make tests/adhoc/CMakeFiles/TestSimpleProtein.dir/depend
make -f tests/adhoc/CMakeFiles/TestSodiumWithViz.dir/build.make tests/adhoc/CMakeFiles/TestSodiumWithViz.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/tests/adhoc /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/adhoc /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/adhoc/CMakeFiles/TestSimpleProtein.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/tests/adhoc /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/adhoc /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/adhoc/CMakeFiles/TestSodiumWithViz.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/tests/adhoc /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/adhoc /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/adhoc/CMakeFiles/TestSerineWithViz.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f tests/adhoc/CMakeFiles/TestSerineWithViz.dir/build.make tests/adhoc/CMakeFiles/TestSerineWithViz.dir/build
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f tests/adhoc/CMakeFiles/TestSodiumWithViz.dir/build.make tests/adhoc/CMakeFiles/TestSodiumWithViz.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f tests/adhoc/CMakeFiles/TestSimpleProtein.dir/build.make tests/adhoc/CMakeFiles/TestSimpleProtein.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 91%] Building CXX object tests/adhoc/CMakeFiles/TestMemoryUse.dir/TestMemoryUse.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/adhoc && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/adhoc/CMakeFiles/TestMemoryUse.dir/TestMemoryUse.cpp.o -MF CMakeFiles/TestMemoryUse.dir/TestMemoryUse.cpp.o.d -o CMakeFiles/TestMemoryUse.dir/TestMemoryUse.cpp.o -c /<<PKGBUILDDIR>>/tests/adhoc/TestMemoryUse.cpp
[ 92%] Building CXX object tests/adhoc/CMakeFiles/TestSerineWithViz.dir/TestSerineWithViz.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/adhoc && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/adhoc/CMakeFiles/TestSerineWithViz.dir/TestSerineWithViz.cpp.o -MF CMakeFiles/TestSerineWithViz.dir/TestSerineWithViz.cpp.o.d -o CMakeFiles/TestSerineWithViz.dir/TestSerineWithViz.cpp.o -c /<<PKGBUILDDIR>>/tests/adhoc/TestSerineWithViz.cpp
[ 93%] Building CXX object tests/adhoc/CMakeFiles/TestSimpleProtein.dir/TestSimpleProtein.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/adhoc && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/adhoc/CMakeFiles/TestSimpleProtein.dir/TestSimpleProtein.cpp.o -MF CMakeFiles/TestSimpleProtein.dir/TestSimpleProtein.cpp.o.d -o CMakeFiles/TestSimpleProtein.dir/TestSimpleProtein.cpp.o -c /<<PKGBUILDDIR>>/tests/adhoc/TestSimpleProtein.cpp
[ 94%] Building CXX object tests/adhoc/CMakeFiles/TestSodiumWithViz.dir/TestSodiumWithViz.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/adhoc && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/adhoc/CMakeFiles/TestSodiumWithViz.dir/TestSodiumWithViz.cpp.o -MF CMakeFiles/TestSodiumWithViz.dir/TestSodiumWithViz.cpp.o.d -o CMakeFiles/TestSodiumWithViz.dir/TestSodiumWithViz.cpp.o -c /<<PKGBUILDDIR>>/tests/adhoc/TestSodiumWithViz.cpp
/<<PKGBUILDDIR>>/tests/adhoc/TestMemoryUse.cpp: In function 'size_t memory_used(bool)':
/<<PKGBUILDDIR>>/tests/adhoc/TestMemoryUse.cpp:36:25: warning: format '%u' expects argument of type 'unsigned int*', but argument 3 has type 'long unsigned int*' [-Wformat=]
36 | fscanf (file, "%ul", &vm); // Just need the first num: vm size
| ~^ ~~~
| | |
| | long unsigned int*
| unsigned int*
| %lu
/<<PKGBUILDDIR>>/tests/adhoc/TestMemoryUse.cpp:36:16: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
36 | fscanf (file, "%ul", &vm); // Just need the first num: vm size
| ~~~~~~~^~~~~~~~~~~~~~~~~~
[ 95%] Linking CXX executable ../../TestSodiumWithViz
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/adhoc && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSodiumWithViz.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/TestSodiumWithViz.dir/TestSodiumWithViz.cpp.o -o ../../TestSodiumWithViz -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf ../../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 95%] Built target TestSodiumWithViz
make -f tests/adhoc/CMakeFiles/TestWriteLargerPdb.dir/build.make tests/adhoc/CMakeFiles/TestWriteLargerPdb.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/tests/adhoc /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/adhoc /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/adhoc/CMakeFiles/TestWriteLargerPdb.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f tests/adhoc/CMakeFiles/TestWriteLargerPdb.dir/build.make tests/adhoc/CMakeFiles/TestWriteLargerPdb.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 96%] Building CXX object tests/adhoc/CMakeFiles/TestWriteLargerPdb.dir/TestWriteLargerPdb.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/adhoc && /usr/bin/c++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT tests/adhoc/CMakeFiles/TestWriteLargerPdb.dir/TestWriteLargerPdb.cpp.o -MF CMakeFiles/TestWriteLargerPdb.dir/TestWriteLargerPdb.cpp.o.d -o CMakeFiles/TestWriteLargerPdb.dir/TestWriteLargerPdb.cpp.o -c /<<PKGBUILDDIR>>/tests/adhoc/TestWriteLargerPdb.cpp
[ 97%] Linking CXX executable ../../TestSerineWithViz
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/adhoc && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerineWithViz.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/TestSerineWithViz.dir/TestSerineWithViz.cpp.o -o ../../TestSerineWithViz -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf ../../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 97%] Built target TestSerineWithViz
[ 98%] Linking CXX executable ../../TestMemoryUse
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/adhoc && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestMemoryUse.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/TestMemoryUse.dir/TestMemoryUse.cpp.o -o ../../TestMemoryUse -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf ../../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 98%] Built target TestMemoryUse
[ 99%] Linking CXX executable ../../TestSimpleProtein
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/adhoc && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSimpleProtein.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/TestSimpleProtein.dir/TestSimpleProtein.cpp.o -o ../../TestSimpleProtein -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf ../../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 99%] Built target TestSimpleProtein
[100%] Linking CXX executable ../../TestWriteLargerPdb
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/adhoc && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestWriteLargerPdb.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/TestWriteLargerPdb.dir/TestWriteLargerPdb.cpp.o -o ../../TestWriteLargerPdb -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf ../../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[100%] Built target TestWriteLargerPdb
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles 0
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
create-stamp debian/debhelper-build-stamp
dh_prep -a
dh_auto_install -a
cd obj-arm-linux-gnueabihf && make -j4 install DESTDIR=/<<PKGBUILDDIR>>/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -S/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
make -f CMakeFiles/Makefile2 preinstall
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[2]: Nothing to be done for 'preinstall'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "None"
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/doc/api/Molmodel/html
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/doc/MolmodelAPI.html
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Molmodel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/SimTKmolmodel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/internal/AtomSubsystem.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/internal/Biotype.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/internal/Clonable.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/internal/Compound.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/internal/CompoundModeler.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/internal/CompoundSystem.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/internal/DNA.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/internal/DuMMForceFieldSubsystem.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/internal/Element.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/internal/Exceptions.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/internal/GrinPointer.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/internal/Ions.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/internal/Ligands.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/internal/Linkage.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/internal/MassCenterMotionRemover.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/internal/MolecularMechanicsSystem.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/internal/NA.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/internal/NoseHooverThermostat.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/internal/PDBReader.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/internal/Pdb.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/internal/PeriodicPdbWriter.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/internal/PeriodicVmdReporter.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/internal/Protein.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/internal/RNA.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/internal/RiboseMobilizer.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/internal/Superpose.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/internal/VanDerWaalsForce.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/internal/VanderWallSphere.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/internal/VelocityRescalingThermostat.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/internal/VmdConnection.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/internal/VoxelHash.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/internal/Water.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/internal/bondGeometry.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/internal/common.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/internal/units.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/doc/MolmodelUsersGuide.pdf
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/libSimTKmolmodel.so.3.0
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/libSimTKmolmodel.so
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install
dh_install -plibsimtkmolmodel3.0 debian/tmp/usr/lib/libSimTKmolmodel.so.* usr/lib/arm-linux-gnueabihf
dh_install -plibsimtkmolmodel-dev debian/tmp/usr/lib/libSimTKmolmodel.so usr/lib/arm-linux-gnueabihf
rm -rf debian/tmp/usr/examples # not installing examples for now
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a
dh_installchangelogs -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libsimtkmolmodel3.0/usr/lib/arm-linux-gnueabihf/libSimTKmolmodel.so.3.0 found in none of the libraries
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'libsimtkmolmodel3.0' in '../libsimtkmolmodel3.0_3.0.113.gd05a5b6-1_armhf.deb'.
dpkg-deb: building package 'libsimtkmolmodel-dev' in '../libsimtkmolmodel-dev_3.0.113.gd05a5b6-1_armhf.deb'.
dpkg-deb: building package 'libsimtkmolmodel3.0-dbgsym' in '../libsimtkmolmodel3.0-dbgsym_3.0.113.gd05a5b6-1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../molmodel_3.0.113.gd05a5b6-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2021-12-02T07:37:59Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
molmodel_3.0.113.gd05a5b6-1_armhf.changes:
------------------------------------------
Format: 1.8
Date: Fri, 26 Nov 2021 09:53:39 -0500
Source: molmodel
Binary: libsimtkmolmodel-dev libsimtkmolmodel3.0 libsimtkmolmodel3.0-dbgsym
Architecture: armhf
Version: 3.0.113.gd05a5b6-1
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andrius Merkys <merkys@debian.org>
Description:
libsimtkmolmodel-dev - C++ API for creating molecular models for SimTK (development file
libsimtkmolmodel3.0 - C++ API for creating molecular models for SimTK
Changes:
molmodel (3.0.113.gd05a5b6-1) unstable; urgency=medium
.
* New upstream release 3.0.113.gd05a5b6.
* Repository has moved to GitHub.
* Dropping upstream-integrated patches.
* Not building examples (they fail to build).
* Build-depends on gemmi-dev.
* Build depends on tao-pegtl-dev and zlib1g-dev (needed by gemmi-dev).
* Bumping copyright years.
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Files:
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b38a54278242d4249803cedcd9cc82f4 8666 libs optional molmodel_3.0.113.gd05a5b6-1_armhf.buildinfo
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
libsimtkmolmodel-dev_3.0.113.gd05a5b6-1_armhf.deb
-------------------------------------------------
new Debian package, version 2.0.
size 1859812 bytes: control archive=2132 bytes.
1178 bytes, 25 lines control
3218 bytes, 41 lines md5sums
Package: libsimtkmolmodel-dev
Source: molmodel
Version: 3.0.113.gd05a5b6-1
Architecture: armhf
Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
Installed-Size: 2265
Depends: libsimtkmolmodel3.0 (= 3.0.113.gd05a5b6-1)
Section: libdevel
Priority: optional
Multi-Arch: same
Homepage: https://simtk.org/projects/molmodel
Description: C++ API for creating molecular models for SimTK (development files)
Provides C++ API for creating molecular models whose dynamics can be simulated
using the SimTK Simbody library. Molmodel is a programmer's toolkit for
building reduced-coordinate, yet still all-atom, models of large biopolymers
such as proteins, RNA, and DNA. One can control the allowed mobility. By
default, Molmodel builds torsion-coordinate models in which bond stretch and
bend angles are rigid while bond torsion angles are mobile. But one is able
to rigidify or free any subsets of the atoms, such as the rigid benzene ring.
.
Molmodel is a C++ API for biochemist-friendly molecular modeling that extends
the Simbody API to simplify construction of high-performance articulated models
of molecules.
.
This package contains development files.
drwxr-xr-x root/root 0 2021-11-26 14:53 ./
drwxr-xr-x root/root 0 2021-11-26 14:53 ./usr/
drwxr-xr-x root/root 0 2021-11-26 14:53 ./usr/include/
-rw-r--r-- root/root 3055 2021-08-27 07:52 ./usr/include/Molmodel.h
-rw-r--r-- root/root 4277 2021-08-27 07:52 ./usr/include/SimTKmolmodel.h
drwxr-xr-x root/root 0 2021-11-26 14:53 ./usr/include/molmodel/
drwxr-xr-x root/root 0 2021-11-26 14:53 ./usr/include/molmodel/internal/
-rw-r--r-- root/root 7528 2021-08-27 07:52 ./usr/include/molmodel/internal/AtomSubsystem.h
-rw-r--r-- root/root 7496 2021-08-27 07:52 ./usr/include/molmodel/internal/Biotype.h
-rw-r--r-- root/root 3009 2021-08-27 07:52 ./usr/include/molmodel/internal/Clonable.h
-rw-r--r-- root/root 86359 2021-08-27 07:52 ./usr/include/molmodel/internal/Compound.h
-rw-r--r-- root/root 7005 2021-08-27 07:52 ./usr/include/molmodel/internal/CompoundModeler.h
-rw-r--r-- root/root 6082 2021-08-27 07:52 ./usr/include/molmodel/internal/CompoundSystem.h
-rw-r--r-- root/root 22366 2021-08-27 07:52 ./usr/include/molmodel/internal/DNA.h
-rw-r--r-- root/root 70215 2021-08-27 07:52 ./usr/include/molmodel/internal/DuMMForceFieldSubsystem.h
-rw-r--r-- root/root 19995 2021-08-27 07:52 ./usr/include/molmodel/internal/Element.h
-rw-r--r-- root/root 363 2021-08-27 07:52 ./usr/include/molmodel/internal/Exceptions.h
-rw-r--r-- root/root 6143 2021-08-27 07:52 ./usr/include/molmodel/internal/GrinPointer.h
-rw-r--r-- root/root 15223 2021-08-27 07:52 ./usr/include/molmodel/internal/Ions.h
-rw-r--r-- root/root 16871 2021-08-27 07:52 ./usr/include/molmodel/internal/Ligands.h
-rw-r--r-- root/root 780 2021-08-27 07:52 ./usr/include/molmodel/internal/Linkage.h
-rw-r--r-- root/root 11934 2021-08-27 07:52 ./usr/include/molmodel/internal/MassCenterMotionRemover.h
-rw-r--r-- root/root 9510 2021-08-27 07:52 ./usr/include/molmodel/internal/MolecularMechanicsSystem.h
-rw-r--r-- root/root 13907 2021-08-27 07:52 ./usr/include/molmodel/internal/NA.h
-rw-r--r-- root/root 3377 2021-08-27 07:52 ./usr/include/molmodel/internal/NoseHooverThermostat.h
-rw-r--r-- root/root 4459 2021-08-27 07:52 ./usr/include/molmodel/internal/PDBReader.h
-rw-r--r-- root/root 19573 2021-08-27 07:52 ./usr/include/molmodel/internal/Pdb.h
-rw-r--r-- root/root 4301 2021-08-27 07:52 ./usr/include/molmodel/internal/PeriodicPdbWriter.h
-rw-r--r-- root/root 3549 2021-08-27 07:52 ./usr/include/molmodel/internal/PeriodicVmdReporter.h
-rw-r--r-- root/root 51009 2021-08-27 07:52 ./usr/include/molmodel/internal/Protein.h
-rw-r--r-- root/root 38117 2021-08-27 07:52 ./usr/include/molmodel/internal/RNA.h
-rw-r--r-- root/root 5122 2021-08-27 07:52 ./usr/include/molmodel/internal/RiboseMobilizer.h
-rw-r--r-- root/root 8762 2021-08-27 07:52 ./usr/include/molmodel/internal/Superpose.h
-rw-r--r-- root/root 13560 2021-08-27 07:52 ./usr/include/molmodel/internal/VanDerWaalsForce.h
-rw-r--r-- root/root 477 2021-08-27 07:52 ./usr/include/molmodel/internal/VanderWallSphere.h
-rw-r--r-- root/root 11619 2021-08-27 07:52 ./usr/include/molmodel/internal/VelocityRescalingThermostat.h
-rw-r--r-- root/root 935 2021-08-27 07:52 ./usr/include/molmodel/internal/VmdConnection.h
-rw-r--r-- root/root 4845 2021-08-27 07:52 ./usr/include/molmodel/internal/VoxelHash.h
-rw-r--r-- root/root 2851 2021-08-27 07:52 ./usr/include/molmodel/internal/Water.h
-rw-r--r-- root/root 3664 2021-08-27 07:52 ./usr/include/molmodel/internal/bondGeometry.h
-rw-r--r-- root/root 4253 2021-08-27 07:52 ./usr/include/molmodel/internal/common.h
-rw-r--r-- root/root 3429 2021-08-27 07:52 ./usr/include/molmodel/internal/units.h
drwxr-xr-x root/root 0 2021-11-26 14:53 ./usr/lib/
drwxr-xr-x root/root 0 2021-11-26 14:53 ./usr/lib/arm-linux-gnueabihf/
lrwxrwxrwx root/root 0 2021-11-26 14:53 ./usr/lib/arm-linux-gnueabihf/libSimTKmolmodel.so -> libSimTKmolmodel.so.3.0
drwxr-xr-x root/root 0 2021-11-26 14:53 ./usr/share/
drwxr-xr-x root/root 0 2021-11-26 14:53 ./usr/share/doc/
drwxr-xr-x root/root 0 2021-11-26 14:53 ./usr/share/doc/libsimtkmolmodel-dev/
-rw-r--r-- root/root 443 2021-11-26 14:53 ./usr/share/doc/libsimtkmolmodel-dev/changelog.Debian.gz
-rw-r--r-- root/root 1447 2021-11-26 14:53 ./usr/share/doc/libsimtkmolmodel-dev/copyright
drwxr-xr-x root/root 0 2021-11-26 14:53 ./usr/share/doc/libsimtkmolmodel-dev/doc/
-rw-r--r-- root/root 241 2021-08-27 07:52 ./usr/share/doc/libsimtkmolmodel-dev/doc/MolmodelAPI.html
-rw-r--r-- root/root 1787506 2021-08-27 07:52 ./usr/share/doc/libsimtkmolmodel-dev/doc/MolmodelUsersGuide.pdf.gz
libsimtkmolmodel3.0-dbgsym_3.0.113.gd05a5b6-1_armhf.deb
-------------------------------------------------------
new Debian package, version 2.0.
size 13755820 bytes: control archive=560 bytes.
430 bytes, 13 lines control
106 bytes, 1 lines md5sums
Package: libsimtkmolmodel3.0-dbgsym
Source: molmodel
Version: 3.0.113.gd05a5b6-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
Installed-Size: 13965
Depends: libsimtkmolmodel3.0 (= 3.0.113.gd05a5b6-1)
Section: debug
Priority: optional
Multi-Arch: same
Description: debug symbols for libsimtkmolmodel3.0
Build-Ids: feece7b66205336370752f4db775e3c936926fed
drwxr-xr-x root/root 0 2021-11-26 14:53 ./
drwxr-xr-x root/root 0 2021-11-26 14:53 ./usr/
drwxr-xr-x root/root 0 2021-11-26 14:53 ./usr/lib/
drwxr-xr-x root/root 0 2021-11-26 14:53 ./usr/lib/debug/
drwxr-xr-x root/root 0 2021-11-26 14:53 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2021-11-26 14:53 ./usr/lib/debug/.build-id/fe/
-rw-r--r-- root/root 14289216 2021-11-26 14:53 ./usr/lib/debug/.build-id/fe/ece7b66205336370752f4db775e3c936926fed.debug
drwxr-xr-x root/root 0 2021-11-26 14:53 ./usr/share/
drwxr-xr-x root/root 0 2021-11-26 14:53 ./usr/share/doc/
lrwxrwxrwx root/root 0 2021-11-26 14:53 ./usr/share/doc/libsimtkmolmodel3.0-dbgsym -> libsimtkmolmodel3.0
libsimtkmolmodel3.0_3.0.113.gd05a5b6-1_armhf.deb
------------------------------------------------
new Debian package, version 2.0.
size 544948 bytes: control archive=1168 bytes.
1157 bytes, 23 lines control
252 bytes, 3 lines md5sums
63 bytes, 1 lines shlibs
67 bytes, 2 lines triggers
Package: libsimtkmolmodel3.0
Source: molmodel
Version: 3.0.113.gd05a5b6-1
Architecture: armhf
Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
Installed-Size: 1840
Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.5), libsimbody3.6, libstdc++6 (>= 11), zlib1g (>= 1:1.2.6)
Section: libs
Priority: optional
Multi-Arch: same
Homepage: https://simtk.org/projects/molmodel
Description: C++ API for creating molecular models for SimTK
Provides C++ API for creating molecular models whose dynamics can be simulated
using the SimTK Simbody library. Molmodel is a programmer's toolkit for
building reduced-coordinate, yet still all-atom, models of large biopolymers
such as proteins, RNA, and DNA. One can control the allowed mobility. By
default, Molmodel builds torsion-coordinate models in which bond stretch and
bend angles are rigid while bond torsion angles are mobile. But one is able
to rigidify or free any subsets of the atoms, such as the rigid benzene ring.
.
Molmodel is a C++ API for biochemist-friendly molecular modeling that extends
the Simbody API to simplify construction of high-performance articulated models
of molecules.
drwxr-xr-x root/root 0 2021-11-26 14:53 ./
drwxr-xr-x root/root 0 2021-11-26 14:53 ./usr/
drwxr-xr-x root/root 0 2021-11-26 14:53 ./usr/lib/
drwxr-xr-x root/root 0 2021-11-26 14:53 ./usr/lib/arm-linux-gnueabihf/
-rw-r--r-- root/root 1869884 2021-11-26 14:53 ./usr/lib/arm-linux-gnueabihf/libSimTKmolmodel.so.3.0
drwxr-xr-x root/root 0 2021-11-26 14:53 ./usr/share/
drwxr-xr-x root/root 0 2021-11-26 14:53 ./usr/share/doc/
drwxr-xr-x root/root 0 2021-11-26 14:53 ./usr/share/doc/libsimtkmolmodel3.0/
-rw-r--r-- root/root 443 2021-11-26 14:53 ./usr/share/doc/libsimtkmolmodel3.0/changelog.Debian.gz
-rw-r--r-- root/root 1447 2021-11-26 14:53 ./usr/share/doc/libsimtkmolmodel3.0/copyright
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 581644
Build-Time: 3370
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 826
Job: molmodel_3.0.113.gd05a5b6-1
Machine Architecture: armhf
Package: molmodel
Package-Time: 4256
Source-Version: 3.0.113.gd05a5b6-1
Space: 581644
Status: successful
Version: 3.0.113.gd05a5b6-1
--------------------------------------------------------------------------------
Finished at 2021-12-02T07:37:59Z
Build needed 01:10:56, 581644k disc space