molmodel →
3.0~svn842-2 →
armhf → 2020-06-23 06:51:45
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02
+==============================================================================+
| molmodel 3.0~svn842-2 (armhf) Tue, 23 Jun 2020 06:26:55 +0000 |
+==============================================================================+
Package: molmodel
Version: 3.0~svn842-2
Source Version: 3.0~svn842-2
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-25536a6b-0681-4b86-8c39-280021ae217c' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.7 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.8 MB]
Fetched 24.5 MB in 10s (2441 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'molmodel' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/debichem-team/molmodel.git
Please use:
git clone https://salsa.debian.org/debichem-team/molmodel.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 8569 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main molmodel 3.0~svn842-2 (dsc) [2102 B]
Get:2 http://172.17.0.1/private bullseye-staging/main molmodel 3.0~svn842-2 (tar) [8559 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main molmodel 3.0~svn842-2 (diff) [7784 B]
Fetched 8569 kB in 2s (4839 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/molmodel-kB4u1C/molmodel-3.0~svn842' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/molmodel-kB4u1C' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-C7IUi2/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-C7IUi2/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-C7IUi2/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-C7IUi2/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-C7IUi2/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-C7IUi2/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-C7IUi2/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-C7IUi2/apt_archive ./ Packages [431 B]
Fetched 2107 B in 0s (9700 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 5 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-C7IUi2/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (64.5 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12230 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: cmake, debhelper-compat (= 13), libmmdb2-dev, libsimbody-dev
Filtered Build-Depends: cmake, debhelper-compat (= 13), libmmdb2-dev, libsimbody-dev
dpkg-deb: building package 'sbuild-build-depends-molmodel-dummy' in '/<<BUILDDIR>>/resolver-C7IUi2/apt_archive/sbuild-build-depends-molmodel-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-molmodel-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-C7IUi2/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-C7IUi2/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-C7IUi2/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-C7IUi2/apt_archive ./ Sources [514 B]
Get:5 copy:/<<BUILDDIR>>/resolver-C7IUi2/apt_archive ./ Packages [595 B]
Fetched 2442 B in 0s (11.1 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install molmodel build dependencies (apt-based resolver)
--------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data
debhelper dh-autoreconf dh-strip-nondeterminism dwz file freeglut3
freeglut3-dev gettext gettext-base groff-base intltool-debian
libarchive-zip-perl libarchive13 libblas-dev libblas3 libbrotli1 libbsd0
libcroco3 libcurl4 libdebhelper-perl libdrm-amdgpu1 libdrm-common
libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libegl-dev libegl-mesa0
libegl1 libelf1 libexpat1 libfile-stripnondeterminism-perl libgbm1
libgfortran5 libgl-dev libgl1 libgl1-mesa-dev libgl1-mesa-dri libglapi-mesa
libgles-dev libgles1 libgles2 libglib2.0-0 libglu1-mesa libglu1-mesa-dev
libglvnd-dev libglvnd0 libglx-dev libglx-mesa0 libglx0 libgssapi-krb5-2
libice-dev libice6 libicu67 libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 liblapack-dev liblapack3 libllvm10 libmagic-mgc libmagic1
libmmdb2-0 libmmdb2-dev libncurses6 libnghttp2-14 libopengl-dev libopengl0
libpipeline1 libprocps8 libpsl5 libpthread-stubs0-dev librhash0 librtmp1
libsensors-config libsensors5 libsigsegv2 libsimbody-dev libsimbody3.6
libsm-dev libsm6 libssh2-1 libssl1.1 libsub-override-perl libtinfo5 libtool
libuchardet0 libuv1 libwayland-client0 libwayland-server0 libx11-6
libx11-data libx11-dev libx11-xcb1 libxau-dev libxau6 libxcb-dri2-0
libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-sync1 libxcb-xfixes0
libxcb1 libxcb1-dev libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6
libxfixes-dev libxfixes3 libxi-dev libxi6 libxml2 libxmu-dev libxmu-headers
libxmu6 libxshmfence1 libxt-dev libxt6 libxxf86vm1 libz3-4 m4 man-db
po-debconf procps sensible-utils x11-common x11proto-core-dev x11proto-dev
x11proto-input-dev x11proto-xext-dev xorg-sgml-doctools xtrans-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation cmake-doc ninja-build dh-make gettext-doc libasprintf-dev
libgettextpo-dev groff lrzip liblapack-doc krb5-doc krb5-user libice-doc
lm-sensors libsm-doc libtool-doc gfortran | fortran95-compiler gcj-jdk
libx11-doc libxcb-doc libxext-doc libxt-doc m4-doc apparmor less www-browser
libmail-box-perl
Recommended packages:
curl | wget | lynx ca-certificates libarchive-cpio-perl libglib2.0-data
shared-mime-info xdg-user-dirs krb5-locales libgpm2 publicsuffix libltdl-dev
libmail-sendmail-perl psmisc
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data
debhelper dh-autoreconf dh-strip-nondeterminism dwz file freeglut3
freeglut3-dev gettext gettext-base groff-base intltool-debian
libarchive-zip-perl libarchive13 libblas-dev libblas3 libbrotli1 libbsd0
libcroco3 libcurl4 libdebhelper-perl libdrm-amdgpu1 libdrm-common
libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libegl-dev libegl-mesa0
libegl1 libelf1 libexpat1 libfile-stripnondeterminism-perl libgbm1
libgfortran5 libgl-dev libgl1 libgl1-mesa-dev libgl1-mesa-dri libglapi-mesa
libgles-dev libgles1 libgles2 libglib2.0-0 libglu1-mesa libglu1-mesa-dev
libglvnd-dev libglvnd0 libglx-dev libglx-mesa0 libglx0 libgssapi-krb5-2
libice-dev libice6 libicu67 libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 liblapack-dev liblapack3 libllvm10 libmagic-mgc libmagic1
libmmdb2-0 libmmdb2-dev libncurses6 libnghttp2-14 libopengl-dev libopengl0
libpipeline1 libprocps8 libpsl5 libpthread-stubs0-dev librhash0 librtmp1
libsensors-config libsensors5 libsigsegv2 libsimbody-dev libsimbody3.6
libsm-dev libsm6 libssh2-1 libssl1.1 libsub-override-perl libtinfo5 libtool
libuchardet0 libuv1 libwayland-client0 libwayland-server0 libx11-6
libx11-data libx11-dev libx11-xcb1 libxau-dev libxau6 libxcb-dri2-0
libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-sync1 libxcb-xfixes0
libxcb1 libxcb1-dev libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6
libxfixes-dev libxfixes3 libxi-dev libxi6 libxml2 libxmu-dev libxmu-headers
libxmu6 libxshmfence1 libxt-dev libxt6 libxxf86vm1 libz3-4 m4 man-db
po-debconf procps sbuild-build-depends-molmodel-dummy sensible-utils
x11-common x11proto-core-dev x11proto-dev x11proto-input-dev
x11proto-xext-dev xorg-sgml-doctools xtrans-dev
0 upgraded, 144 newly installed, 0 to remove and 5 not upgraded.
Need to get 71.0 MB of archives.
After this operation, 831 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-C7IUi2/apt_archive ./ sbuild-build-depends-molmodel-dummy 0.invalid.0 [880 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libtinfo5 armhf 6.2-1 [318 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-5 [783 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.2-2 [29.6 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.2-1 [1269 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf libncurses6 armhf 6.2-1 [79.5 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf libprocps8 armhf 2:3.3.16-5 [59.8 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf procps armhf 2:3.3.16-5 [238 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12+nmu1 [16.0 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-5 [262 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.38-5 [113 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-5 [67.0 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.2-1 [775 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf cmake-data all 3.16.3-3+rpi1 [1628 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf libicu67 armhf 67.1-2 [8286 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-5+b1 [593 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf libarchive13 armhf 3.4.3-1 [295 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf libbrotli1 armhf 1.0.7-6.1 [255 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf libkrb5support0 armhf 1.17-7+rpi1+b1 [61.8 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf libk5crypto3 armhf 1.17-7+rpi1+b1 [112 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf libkeyutils1 armhf 1.6.1-2 [14.5 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf libssl1.1 armhf 1.1.1g-1 [1272 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf libkrb5-3 armhf 1.17-7+rpi1+b1 [318 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf libgssapi-krb5-2 armhf 1.17-7+rpi1+b1 [136 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf libnghttp2-14 armhf 1.41.0-2 [61.2 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf libpsl5 armhf 0.21.0-1.1 [54.2 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b1 [54.3 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf libssh2-1 armhf 1.8.0-2.1 [126 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf libcurl4 armhf 7.68.0-1 [286 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.9-1 [71.5 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf libjsoncpp1 armhf 1.7.4-3.1 [65.8 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf librhash0 armhf 1.3.9-1 [133 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf libuv1 armhf 1.38.0-2 [115 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf cmake armhf 3.16.3-3+rpi1 [2653 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-14 [513 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 13.1 [187 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.8.1-1 [25.2 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.8.1-1 [14.9 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.64.3-1 [1159 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 13.1 [1012 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf libglvnd0 armhf 1.3.1-1 [55.2 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf libxau6 armhf 1:1.0.8-1+b2 [19.1 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf libxcb1 armhf 1.14-2 [135 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf libx11-data all 2:1.6.9-2 [298 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf libx11-6 armhf 2:1.6.9-2 [692 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf libdrm-common all 2.4.101-2+rpi1 [14.6 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf libdrm2 armhf 2.4.101-2+rpi1 [37.6 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf libglapi-mesa armhf 20.1.1-1 [80.4 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf libx11-xcb1 armhf 2:1.6.9-2 [190 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf libxcb-dri2-0 armhf 1.14-2 [103 kB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf libxcb-dri3-0 armhf 1.14-2 [102 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf libxcb-glx0 armhf 1.14-2 [117 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf libxcb-present0 armhf 1.14-2 [101 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf libxcb-sync1 armhf 1.14-2 [104 kB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf libxdamage1 armhf 1:1.1.5-2 [15.2 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf libxext6 armhf 2:1.3.3-1+b2 [47.8 kB]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf libxfixes3 armhf 1:5.0.3-2 [20.7 kB]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf libxshmfence1 armhf 1.3-1 [8636 B]
Get:78 http://172.17.0.1/private bullseye-staging/main armhf libxxf86vm1 armhf 1:1.1.4-1+b2 [20.1 kB]
Get:79 http://172.17.0.1/private bullseye-staging/main armhf libdrm-amdgpu1 armhf 2.4.101-2+rpi1 [27.1 kB]
Get:80 http://172.17.0.1/private bullseye-staging/main armhf libdrm-nouveau2 armhf 2.4.101-2+rpi1 [24.8 kB]
Get:81 http://172.17.0.1/private bullseye-staging/main armhf libdrm-radeon1 armhf 2.4.101-2+rpi1 [29.1 kB]
Get:82 http://172.17.0.1/private bullseye-staging/main armhf libedit2 armhf 3.1-20191231-1 [79.2 kB]
Get:83 http://172.17.0.1/private bullseye-staging/main armhf libz3-4 armhf 4.8.8-1 [5913 kB]
Get:84 http://172.17.0.1/private bullseye-staging/main armhf libllvm10 armhf 1:10.0.0-4+rpi1 [13.7 MB]
Get:85 http://172.17.0.1/private bullseye-staging/main armhf libsensors-config all 1:3.6.0-2 [32.0 kB]
Get:86 http://172.17.0.1/private bullseye-staging/main armhf libsensors5 armhf 1:3.6.0-2 [50.2 kB]
Get:87 http://172.17.0.1/private bullseye-staging/main armhf libgl1-mesa-dri armhf 20.1.1-1 [6168 kB]
Get:88 http://172.17.0.1/private bullseye-staging/main armhf libglx-mesa0 armhf 20.1.1-1 [174 kB]
Get:89 http://172.17.0.1/private bullseye-staging/main armhf libglx0 armhf 1.3.1-1 [25.7 kB]
Get:90 http://172.17.0.1/private bullseye-staging/main armhf libgl1 armhf 1.3.1-1 [105 kB]
Get:91 http://172.17.0.1/private bullseye-staging/main armhf libxi6 armhf 2:1.7.10-1 [77.9 kB]
Get:92 http://172.17.0.1/private bullseye-staging/main armhf freeglut3 armhf 2.8.1-6 [112 kB]
Get:93 http://172.17.0.1/private bullseye-staging/main armhf xorg-sgml-doctools all 1:1.11-1 [21.9 kB]
Get:94 http://172.17.0.1/private bullseye-staging/main armhf x11proto-dev all 2020.1-1 [594 kB]
Get:95 http://172.17.0.1/private bullseye-staging/main armhf x11proto-core-dev all 2020.1-1 [3404 B]
Get:96 http://172.17.0.1/private bullseye-staging/main armhf libxau-dev armhf 1:1.0.8-1+b2 [22.4 kB]
Get:97 http://172.17.0.1/private bullseye-staging/main armhf libxdmcp-dev armhf 1:1.1.2-3 [40.9 kB]
Get:98 http://172.17.0.1/private bullseye-staging/main armhf xtrans-dev all 1.4.0-1 [98.7 kB]
Get:99 http://172.17.0.1/private bullseye-staging/main armhf libpthread-stubs0-dev armhf 0.4-1 [5344 B]
Get:100 http://172.17.0.1/private bullseye-staging/main armhf libxcb1-dev armhf 1.14-2 [173 kB]
Get:101 http://172.17.0.1/private bullseye-staging/main armhf libx11-dev armhf 2:1.6.9-2 [766 kB]
Get:102 http://172.17.0.1/private bullseye-staging/main armhf libglx-dev armhf 1.3.1-1 [16.2 kB]
Get:103 http://172.17.0.1/private bullseye-staging/main armhf libgl-dev armhf 1.3.1-1 [100 kB]
Get:104 http://172.17.0.1/private bullseye-staging/main armhf libwayland-server0 armhf 1.18.0-1 [27.8 kB]
Get:105 http://172.17.0.1/private bullseye-staging/main armhf libgbm1 armhf 20.1.1-1 [71.9 kB]
Get:106 http://172.17.0.1/private bullseye-staging/main armhf libwayland-client0 armhf 1.18.0-1 [21.7 kB]
Get:107 http://172.17.0.1/private bullseye-staging/main armhf libxcb-xfixes0 armhf 1.14-2 [105 kB]
Get:108 http://172.17.0.1/private bullseye-staging/main armhf libegl-mesa0 armhf 20.1.1-1 [125 kB]
Get:109 http://172.17.0.1/private bullseye-staging/main armhf libegl1 armhf 1.3.1-1 [28.7 kB]
Get:110 http://172.17.0.1/private bullseye-staging/main armhf libegl-dev armhf 1.3.1-1 [19.2 kB]
Get:111 http://172.17.0.1/private bullseye-staging/main armhf libgles1 armhf 1.3.1-1 [13.1 kB]
Get:112 http://172.17.0.1/private bullseye-staging/main armhf libgles2 armhf 1.3.1-1 [20.0 kB]
Get:113 http://172.17.0.1/private bullseye-staging/main armhf libgles-dev armhf 1.3.1-1 [50.2 kB]
Get:114 http://172.17.0.1/private bullseye-staging/main armhf libopengl0 armhf 1.3.1-1 [39.4 kB]
Get:115 http://172.17.0.1/private bullseye-staging/main armhf libopengl-dev armhf 1.3.1-1 [5820 B]
Get:116 http://172.17.0.1/private bullseye-staging/main armhf libglvnd-dev armhf 1.3.1-1 [13.8 kB]
Get:117 http://172.17.0.1/private bullseye-staging/main armhf libgl1-mesa-dev armhf 20.1.1-1 [50.1 kB]
Get:118 http://172.17.0.1/private bullseye-staging/main armhf libglu1-mesa armhf 9.0.1-1 [127 kB]
Get:119 http://172.17.0.1/private bullseye-staging/main armhf libglu1-mesa-dev armhf 9.0.1-1 [166 kB]
Get:120 http://172.17.0.1/private bullseye-staging/main armhf x11proto-xext-dev all 2020.1-1 [3404 B]
Get:121 http://172.17.0.1/private bullseye-staging/main armhf libxext-dev armhf 2:1.3.3-1+b2 [102 kB]
Get:122 http://172.17.0.1/private bullseye-staging/main armhf x11-common all 1:7.7+20 [252 kB]
Get:123 http://172.17.0.1/private bullseye-staging/main armhf libice6 armhf 2:1.0.9-2 [51.6 kB]
Get:124 http://172.17.0.1/private bullseye-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:125 http://172.17.0.1/private bullseye-staging/main armhf libxt6 armhf 1:1.1.5-1+b3 [156 kB]
Get:126 http://172.17.0.1/private bullseye-staging/main armhf libice-dev armhf 2:1.0.9-2 [58.8 kB]
Get:127 http://172.17.0.1/private bullseye-staging/main armhf libsm-dev armhf 2:1.2.3-1 [35.4 kB]
Get:128 http://172.17.0.1/private bullseye-staging/main armhf libxt-dev armhf 1:1.1.5-1+b3 [390 kB]
Get:129 http://172.17.0.1/private bullseye-staging/main armhf freeglut3-dev armhf 2.8.1-6 [165 kB]
Get:130 http://172.17.0.1/private bullseye-staging/main armhf libblas3 armhf 3.9.0-2 [108 kB]
Get:131 http://172.17.0.1/private bullseye-staging/main armhf libblas-dev armhf 3.9.0-2 [113 kB]
Get:132 http://172.17.0.1/private bullseye-staging/main armhf libgfortran5 armhf 10.1.0-3+rpi1 [231 kB]
Get:133 http://172.17.0.1/private bullseye-staging/main armhf liblapack3 armhf 3.9.0-2 [1602 kB]
Get:134 http://172.17.0.1/private bullseye-staging/main armhf liblapack-dev armhf 3.9.0-2 [2981 kB]
Get:135 http://172.17.0.1/private bullseye-staging/main armhf libmmdb2-0 armhf 2.0.5-1 [264 kB]
Get:136 http://172.17.0.1/private bullseye-staging/main armhf libmmdb2-dev armhf 2.0.5-1 [91.9 kB]
Get:137 http://172.17.0.1/private bullseye-staging/main armhf libxfixes-dev armhf 1:5.0.3-2 [22.9 kB]
Get:138 http://172.17.0.1/private bullseye-staging/main armhf x11proto-input-dev all 2020.1-1 [3412 B]
Get:139 http://172.17.0.1/private bullseye-staging/main armhf libxi-dev armhf 2:1.7.10-1 [236 kB]
Get:140 http://172.17.0.1/private bullseye-staging/main armhf libxmu6 armhf 2:1.1.2-2+b3 [52.1 kB]
Get:141 http://172.17.0.1/private bullseye-staging/main armhf libxmu-headers all 2:1.1.2-2 [51.9 kB]
Get:142 http://172.17.0.1/private bullseye-staging/main armhf libxmu-dev armhf 2:1.1.2-2+b3 [56.5 kB]
Get:143 http://172.17.0.1/private bullseye-staging/main armhf libsimbody3.6 armhf 3.6.1+dfsg-7 [2644 kB]
Get:144 http://172.17.0.1/private bullseye-staging/main armhf libsimbody-dev armhf 3.6.1+dfsg-7 [2725 kB]
debconf: delaying package configuration, since apt-utils is not installed
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No schema files found: doing nothing.
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Setting up x11-common (1:7.7+20) ...
update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
invoke-rc.d: could not determine current runlevel
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libsensors-config (1:3.6.0-2) ...
Setting up libnghttp2-14:armhf (1.41.0-2) ...
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Setting up libopengl0:armhf (1.3.1-1) ...
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Setting up libuv1:armhf (1.38.0-2) ...
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Setting up cmake-data (3.16.3-3+rpi1) ...
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Setting up libbsd0:armhf (0.10.0-1) ...
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Setting up libprocps8:armhf (2:3.3.16-5) ...
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
Setting up libjsoncpp1:armhf (1.7.4-3.1) ...
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Setting up liblapack3:armhf (3.9.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libxcb1:armhf (1.14-2) ...
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Setting up libtool (2.4.6-14) ...
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Setting up libedit2:armhf (3.1-20191231-1) ...
Setting up m4 (1.4.18-4) ...
Setting up libllvm10:armhf (1:10.0.0-4+rpi1) ...
Setting up libxcb-present0:armhf (1.14-2) ...
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Setting up libxcb-sync1:armhf (1.14-2) ...
Setting up x11proto-core-dev (2020.1-1) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up liblapack-dev:armhf (3.9.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up libgssapi-krb5-2:armhf (1.17-7+rpi1+b1) ...
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Setting up libcroco3:armhf (0.6.13-1) ...
Setting up autoconf (2.69-11.1) ...
Setting up libxcb-dri2-0:armhf (1.14-2) ...
Setting up dh-strip-nondeterminism (1.8.1-1) ...
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Setting up dwz (0.13-5) ...
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Setting up procps (2:3.3.16-5) ...
update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode
Setting up libcurl4:armhf (7.68.0-1) ...
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Setting up automake (1:1.16.2-1) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
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Setting up libdrm-nouveau2:armhf (2.4.101-2+rpi1) ...
Setting up gettext (0.19.8.1-10) ...
Setting up libxdamage1:armhf (1:1.1.5-2) ...
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Setting up libgbm1:armhf (20.1.1-1) ...
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Setting up libdrm-radeon1:armhf (2.4.101-2+rpi1) ...
Setting up libgl1-mesa-dri:armhf (20.1.1-1) ...
Setting up libx11-dev:armhf (2:1.6.9-2) ...
Setting up libxext6:armhf (2:1.3.3-1+b2) ...
Setting up man-db (2.9.2-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libxxf86vm1:armhf (1:1.1.4-1+b2) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up libegl-mesa0:armhf (20.1.1-1) ...
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Setting up libxt6:armhf (1:1.1.5-1+b3) ...
Setting up libxext-dev:armhf (2:1.3.3-1+b2) ...
Setting up libegl1:armhf (1.3.1-1) ...
Setting up cmake (3.16.3-3+rpi1) ...
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Setting up libglx-mesa0:armhf (20.1.1-1) ...
Setting up libxi6:armhf (2:1.7.10-1) ...
Setting up libglx0:armhf (1.3.1-1) ...
Setting up po-debconf (1.0.21) ...
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Setting up libxt-dev:armhf (1:1.1.5-1+b3) ...
Setting up libglx-dev:armhf (1.3.1-1) ...
Setting up libglu1-mesa:armhf (9.0.1-1) ...
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Setting up freeglut3:armhf (2.8.1-6) ...
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Setting up libglu1-mesa-dev:armhf (9.0.1-1) ...
Setting up libsimbody3.6:armhf (3.6.1+dfsg-7) ...
Setting up libgles-dev:armhf (1.3.1-1) ...
Setting up libglvnd-dev:armhf (1.3.1-1) ...
Setting up libgl1-mesa-dev:armhf (20.1.1-1) ...
Setting up freeglut3-dev:armhf (2.8.1-6) ...
Setting up libsimbody-dev:armhf (3.6.1+dfsg-7) ...
Setting up dh-autoreconf (19) ...
Setting up debhelper (13.1) ...
Setting up sbuild-build-depends-molmodel-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.30-8+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-76-generic armhf (armv8l)
Toolchain package versions: binutils_2.34-8+rpi1 dpkg-dev_1.19.7 g++-9_9.3.0-13+rpi1 gcc-9_9.3.0-13+rpi1 libc6-dev_2.30-8+rpi1 libstdc++-9-dev_9.3.0-13+rpi1 libstdc++6_10.1.0-3+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2
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libreadline7_7.0-5 libreadline8_8.0-4 librhash0_1.3.9-1 librtmp1_2.4+20151223.gitfa8646d.1-2+b1 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.3-1+rpi1 libselinux1_3.0-1+b1 libsemanage-common_3.0-1 libsemanage1_3.0-1+b1 libsensors-config_1:3.6.0-2 libsensors5_1:3.6.0-2 libsepol1_3.0-1 libsigsegv2_2.12-2 libsimbody-dev_3.6.1+dfsg-7 libsimbody3.6_3.6.1+dfsg-7 libsm-dev_2:1.2.3-1 libsm6_2:1.2.3-1 libsmartcols1_2.35.2-2 libsqlite3-0_3.31.1-5 libss2_1.45.6-1 libssh2-1_1.8.0-2.1 libssl1.1_1.1.1g-1 libstdc++-9-dev_9.3.0-13+rpi1 libstdc++6_10.1.0-3+rpi1 libsub-override-perl_0.09-2 libsystemd0_245.6-1+rpi1 libtasn1-6_4.16.0-2 libtinfo5_6.2-1 libtinfo6_6.2-1 libtool_2.4.6-14 libubsan1_10.1.0-3+rpi1 libuchardet0_0.0.7-1 libudev1_245.6-1+rpi1 libunistring2_0.9.10-4 libuuid1_2.35.2-2 libuv1_1.38.0-2 libwayland-client0_1.18.0-1 libwayland-server0_1.18.0-1 libx11-6_2:1.6.9-2 libx11-data_2:1.6.9-2 libx11-dev_2:1.6.9-2 libx11-xcb1_2:1.6.9-2 libxau-dev_1:1.0.8-1+b2 libxau6_1:1.0.8-1+b2 libxcb-dri2-0_1.14-2 libxcb-dri3-0_1.14-2 libxcb-glx0_1.14-2 libxcb-present0_1.14-2 libxcb-sync1_1.14-2 libxcb-xfixes0_1.14-2 libxcb1_1.14-2 libxcb1-dev_1.14-2 libxdamage1_1:1.1.5-2 libxdmcp-dev_1:1.1.2-3 libxdmcp6_1:1.1.2-3 libxext-dev_2:1.3.3-1+b2 libxext6_2:1.3.3-1+b2 libxfixes-dev_1:5.0.3-2 libxfixes3_1:5.0.3-2 libxi-dev_2:1.7.10-1 libxi6_2:1.7.10-1 libxml2_2.9.10+dfsg-5+b1 libxmu-dev_2:1.1.2-2+b3 libxmu-headers_2:1.1.2-2 libxmu6_2:1.1.2-2+b3 libxshmfence1_1.3-1 libxt-dev_1:1.1.5-1+b3 libxt6_1:1.1.5-1+b3 libxxf86vm1_1:1.1.4-1+b2 libz3-4_4.8.8-1 libzstd1_1.4.5+dfsg-2+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.2.1-2 man-db_2.9.2-1 mawk_1.3.4.20200120-2 mount_2.35.2-2 ncurses-base_6.2-1 ncurses-bin_6.2-1 netbase_6.1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.3-4 perl-base_5.30.3-4 perl-modules-5.30_5.30.3-4 pinentry-curses_1.1.0-4 po-debconf_1.0.21 procps_2:3.3.16-5 raspbian-archive-keyring_20120528.2 readline-common_8.0-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-molmodel-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-3 tar_1.30+dfsg-7 tzdata_2020a-1 util-linux_2.35.2-2 x11-common_1:7.7+20 x11proto-core-dev_2020.1-1 x11proto-dev_2020.1-1 x11proto-input-dev_2020.1-1 x11proto-xext-dev_2020.1-1 xorg-sgml-doctools_1:1.11-1 xtrans-dev_1.4.0-1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Thu Jun 18 04:27:13 2020 UTC
gpgv: using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287
gpgv: issuer "merkys@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./molmodel_3.0~svn842-2.dsc
dpkg-source: info: extracting molmodel in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking molmodel_3.0~svn842.orig.tar.xz
dpkg-source: info: unpacking molmodel_3.0~svn842-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying remove-failing-tests.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-25536a6b-0681-4b86-8c39-280021ae217c
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package molmodel
dpkg-buildpackage: info: source version 3.0~svn842-2
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean
dh_clean
debian/rules binary-arch
dh binary-arch
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
cd obj-arm-linux-gnueabihf && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf ..
-- The C compiler identification is GNU 9.3.0
-- The CXX compiler identification is GNU 9.3.0
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Could NOT find OpenMM (missing: OpenMM_INCLUDE_DIR OpenMM_LIBRARY OpenMM_LIBRARIES)
-- Could not find 'svnversion' executable; 'about' will be wrong. (Cygwin provides one on Windows.)
-- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE)
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_EXPORT_NO_PACKAGE_REGISTRY
CMAKE_INSTALL_LIBDIR
CMAKE_INSTALL_LOCALSTATEDIR
CMAKE_INSTALL_RUNSTATEDIR
CMAKE_INSTALL_SYSCONFDIR
-- Build files have been written to: /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf
dh_auto_build -a
cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -S"/<<PKGBUILDDIR>>" -B"/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles/progress.marks"
make -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f sharedTarget/CMakeFiles/SimTKmolmodel.dir/build.make sharedTarget/CMakeFiles/SimTKmolmodel.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/sharedTarget" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/sharedTarget" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/sharedTarget/CMakeFiles/SimTKmolmodel.dir/DependInfo.cmake" --color=
Scanning dependencies of target SimTKmolmodel
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f sharedTarget/CMakeFiles/SimTKmolmodel.dir/build.make sharedTarget/CMakeFiles/SimTKmolmodel.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 1%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/About.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/About.cpp.o -c "/<<PKGBUILDDIR>>/src/About.cpp"
[ 3%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/Biotype.cpp.o
[ 3%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/AtomSubsystem.cpp.o
[ 3%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/BondGeometry.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/Biotype.cpp.o -c "/<<PKGBUILDDIR>>/src/Biotype.cpp"
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/AtomSubsystem.cpp.o -c "/<<PKGBUILDDIR>>/src/AtomSubsystem.cpp"
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/BondGeometry.cpp.o -c "/<<PKGBUILDDIR>>/src/BondGeometry.cpp"
[ 4%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/Compound.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/Compound.cpp.o -c "/<<PKGBUILDDIR>>/src/Compound.cpp"
[ 4%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/CompoundSystem.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/CompoundSystem.cpp.o -c "/<<PKGBUILDDIR>>/src/CompoundSystem.cpp"
In file included from /usr/include/c++/9/vector:72,
from /usr/include/simbody/SimTKcommon/internal/Array.h:39,
from /usr/include/simbody/SimTKcommon/basics.h:53,
from /usr/include/simbody/SimTKcommon.h:32,
from /usr/include/simbody/SimTKsimbody.h:43,
from /<<PKGBUILDDIR>>/./include/molmodel/internal/AtomSubsystem.h:4,
from /<<PKGBUILDDIR>>/src/AtomSubsystem.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<SimTK::Vec<3, double, 1>, SimTK::AtomSubsystem::AtomIndex>}; _Tp = std::pair<SimTK::Vec<3>, SimTK::AtomSubsystem::AtomIndex>; _Alloc = std::allocator<std::pair<SimTK::Vec<3>, SimTK::AtomSubsystem::AtomIndex> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<std::pair<SimTK::Vec<3>, SimTK::AtomSubsystem::AtomIndex>, std::allocator<std::pair<SimTK::Vec<3>, SimTK::AtomSubsystem::AtomIndex> > >::iterator' {aka '__gnu_cxx::__normal_iterator<std::pair<SimTK::Vec<3>, SimTK::AtomSubsystem::AtomIndex>*, std::vector<std::pair<SimTK::Vec<3>, SimTK::AtomSubsystem::AtomIndex>, std::allocator<std::pair<SimTK::Vec<3>, SimTK::AtomSubsystem::AtomIndex> > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void SimTK::AtomSubsystem::PairIterator::populateVoxelHash(std::vector<SimTK::AtomSubsystem::AtomsByBody>::const_iterator)':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<SimTK::Vec<3>, SimTK::AtomSubsystem::AtomIndex>*, std::vector<std::pair<SimTK::Vec<3>, SimTK::AtomSubsystem::AtomIndex>, std::allocator<std::pair<SimTK::Vec<3>, SimTK::AtomSubsystem::AtomIndex> > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {SimTK::AtomSubsystem::Atom}; _Tp = SimTK::AtomSubsystem::Atom; _Alloc = std::allocator<SimTK::AtomSubsystem::Atom>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<SimTK::AtomSubsystem::Atom>::iterator' {aka '__gnu_cxx::__normal_iterator<SimTK::AtomSubsystem::Atom*, std::vector<SimTK::AtomSubsystem::Atom> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'SimTK::AtomSubsystem::AtomIndex SimTK::AtomSubsystem::addAtom(SimTK::AtomSubsystem::mass_t)':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<SimTK::AtomSubsystem::Atom*, std::vector<SimTK::AtomSubsystem::Atom> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/set:60,
from /usr/include/simbody/simmath/internal/Contact.h:30,
from /usr/include/simbody/SimTKmath.h:46,
from /usr/include/simbody/SimTKsimbody.h:44,
from /<<PKGBUILDDIR>>/./include/molmodel/internal/CompoundSystem.h:4,
from /<<PKGBUILDDIR>>/src/CompoundSystem.cpp:1:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const SimTK::Compound::AtomIndex&>, std::tuple<>}; _Key = SimTK::Compound::AtomIndex; _Val = std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding>; _KeyOfValue = std::_Select1st<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> >; _Compare = std::less<SimTK::Compound::AtomIndex>; _Alloc = std::allocator<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<SimTK::Compound::AtomIndex, std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding>, std::_Select1st<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> >, std::less<SimTK::Compound::AtomIndex>, std::allocator<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /usr/include/simbody/simmath/internal/CollisionDetectionAlgorithm.h:32,
from /usr/include/simbody/SimTKmath.h:48,
from /usr/include/simbody/SimTKsimbody.h:44,
from /<<PKGBUILDDIR>>/./include/molmodel/internal/CompoundSystem.h:4,
from /<<PKGBUILDDIR>>/src/CompoundSystem.cpp:1:
/usr/include/c++/9/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = SimTK::Compound::AtomIndex; _Tp = SimTK::AtomBonding; _Compare = std::less<SimTK::Compound::AtomIndex>; _Alloc = std::allocator<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> >]':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<SimTK::Compound::AtomIndex, std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding>, std::_Select1st<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> >, std::less<SimTK::Compound::AtomIndex>, std::allocator<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/set:60,
from /usr/include/simbody/simmath/internal/Contact.h:30,
from /usr/include/simbody/SimTKmath.h:46,
from /usr/include/simbody/SimTKsimbody.h:44,
from /<<PKGBUILDDIR>>/./include/molmodel/internal/CompoundSystem.h:4,
from /<<PKGBUILDDIR>>/src/CompoundSystem.cpp:1:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const SimTK::DuMM::ClusterIndex&>, std::tuple<>}; _Key = SimTK::DuMM::ClusterIndex; _Val = std::pair<const SimTK::DuMM::ClusterIndex, SimTK::RigidUnit>; _KeyOfValue = std::_Select1st<std::pair<const SimTK::DuMM::ClusterIndex, SimTK::RigidUnit> >; _Compare = std::less<SimTK::DuMM::ClusterIndex>; _Alloc = std::allocator<std::pair<const SimTK::DuMM::ClusterIndex, SimTK::RigidUnit> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<SimTK::DuMM::ClusterIndex, std::pair<const SimTK::DuMM::ClusterIndex, SimTK::RigidUnit>, std::_Select1st<std::pair<const SimTK::DuMM::ClusterIndex, SimTK::RigidUnit> >, std::less<SimTK::DuMM::ClusterIndex>, std::allocator<std::pair<const SimTK::DuMM::ClusterIndex, SimTK::RigidUnit> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const SimTK::DuMM::ClusterIndex, SimTK::RigidUnit> >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /usr/include/simbody/simmath/internal/CollisionDetectionAlgorithm.h:32,
from /usr/include/simbody/SimTKmath.h:48,
from /usr/include/simbody/SimTKsimbody.h:44,
from /<<PKGBUILDDIR>>/./include/molmodel/internal/CompoundSystem.h:4,
from /<<PKGBUILDDIR>>/src/CompoundSystem.cpp:1:
/usr/include/c++/9/bits/stl_map.h: In member function 'void SimTK::CompoundSystem::modelOneCompound(SimTK::CompoundSystem::CompoundIndex, SimTK::String)':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<SimTK::Compound::AtomIndex, std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding>, std::_Select1st<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> >, std::less<SimTK::Compound::AtomIndex>, std::allocator<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<SimTK::Compound::AtomIndex, std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding>, std::_Select1st<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> >, std::less<SimTK::Compound::AtomIndex>, std::allocator<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<SimTK::Compound::AtomIndex, std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding>, std::_Select1st<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> >, std::less<SimTK::Compound::AtomIndex>, std::allocator<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<SimTK::Compound::AtomIndex, std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding>, std::_Select1st<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> >, std::less<SimTK::Compound::AtomIndex>, std::allocator<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<SimTK::Compound::AtomIndex, std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding>, std::_Select1st<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> >, std::less<SimTK::Compound::AtomIndex>, std::allocator<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<SimTK::Compound::AtomIndex, std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding>, std::_Select1st<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> >, std::less<SimTK::Compound::AtomIndex>, std::allocator<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<SimTK::Compound::AtomIndex, std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding>, std::_Select1st<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> >, std::less<SimTK::Compound::AtomIndex>, std::allocator<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<SimTK::DuMM::ClusterIndex, std::pair<const SimTK::DuMM::ClusterIndex, SimTK::RigidUnit>, std::_Select1st<std::pair<const SimTK::DuMM::ClusterIndex, SimTK::RigidUnit> >, std::less<SimTK::DuMM::ClusterIndex>, std::allocator<std::pair<const SimTK::DuMM::ClusterIndex, SimTK::RigidUnit> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const SimTK::DuMM::ClusterIndex, SimTK::RigidUnit> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<SimTK::DuMM::ClusterIndex, std::pair<const SimTK::DuMM::ClusterIndex, SimTK::RigidUnit>, std::_Select1st<std::pair<const SimTK::DuMM::ClusterIndex, SimTK::RigidUnit> >, std::less<SimTK::DuMM::ClusterIndex>, std::allocator<std::pair<const SimTK::DuMM::ClusterIndex, SimTK::RigidUnit> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const SimTK::DuMM::ClusterIndex, SimTK::RigidUnit> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<SimTK::Compound::AtomIndex, std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding>, std::_Select1st<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> >, std::less<SimTK::Compound::AtomIndex>, std::allocator<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<SimTK::Compound::AtomIndex, std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding>, std::_Select1st<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> >, std::less<SimTK::Compound::AtomIndex>, std::allocator<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<SimTK::Compound::AtomIndex, std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding>, std::_Select1st<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> >, std::less<SimTK::Compound::AtomIndex>, std::allocator<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const SimTK::Compound::AtomIndex, SimTK::AtomBonding> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
[ 5%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/DuMMForceFieldSubsystem.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/DuMMForceFieldSubsystem.cpp.o -c "/<<PKGBUILDDIR>>/src/DuMMForceFieldSubsystem.cpp"
[ 6%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/DuMMForceFieldSubsystemRep.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/DuMMForceFieldSubsystemRep.cpp.o -c "/<<PKGBUILDDIR>>/src/DuMMForceFieldSubsystemRep.cpp"
[ 6%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/Element.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/Element.cpp.o -c "/<<PKGBUILDDIR>>/src/Element.cpp"
In file included from /usr/include/c++/9/vector:72,
from /usr/include/simbody/SimTKcommon/internal/Array.h:39,
from /usr/include/simbody/SimTKcommon/basics.h:53,
from /usr/include/simbody/SimTKcommon.h:32,
from /usr/include/simbody/SimTKsimbody.h:43,
from /<<PKGBUILDDIR>>/src/Compound.cpp:32:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const SimTK::Vec<3, double, 1>&}; _Tp = SimTK::Vec<3>; _Alloc = std::allocator<SimTK::Vec<3> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<SimTK::Vec<3> >::iterator' {aka '__gnu_cxx::__normal_iterator<SimTK::Vec<3>*, std::vector<SimTK::Vec<3> > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {SimTK::BondCenter}; _Tp = SimTK::BondCenter; _Alloc = std::allocator<SimTK::BondCenter>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<SimTK::BondCenter>::iterator' {aka '__gnu_cxx::__normal_iterator<SimTK::BondCenter*, std::vector<SimTK::BondCenter> >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {SimTK::BondCenter}; _Tp = SimTK::BondCenter; _Alloc = std::allocator<SimTK::BondCenter>]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<SimTK::BondCenter*, std::vector<SimTK::BondCenter> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {SimTK::BondInfo}; _Tp = SimTK::BondInfo; _Alloc = std::allocator<SimTK::BondInfo>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<SimTK::BondInfo>::iterator' {aka '__gnu_cxx::__normal_iterator<SimTK::BondInfo*, std::vector<SimTK::BondInfo> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {SimTK::BondInfo}; _Tp = SimTK::BondInfo; _Alloc = std::allocator<SimTK::BondInfo>]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<SimTK::BondInfo*, std::vector<SimTK::BondInfo> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {SimTK::Vec<3, double, 1>}; _Tp = SimTK::Vec<3>; _Alloc = std::allocator<SimTK::Vec<3> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<SimTK::Vec<3> >::iterator' {aka '__gnu_cxx::__normal_iterator<SimTK::Vec<3>*, std::vector<SimTK::Vec<3> > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {SimTK::Vec<3, double, 1>}; _Tp = SimTK::Vec<3>; _Alloc = std::allocator<SimTK::Vec<3> >]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<SimTK::Vec<3>*, std::vector<SimTK::Vec<3> > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[ 7%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/MolecularMechanicsSystem.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/MolecularMechanicsSystem.cpp.o -c "/<<PKGBUILDDIR>>/src/MolecularMechanicsSystem.cpp"
In file included from /usr/include/c++/9/vector:67,
from /usr/include/simbody/SimTKcommon/internal/Array.h:39,
from /usr/include/simbody/SimTKcommon/basics.h:53,
from /usr/include/simbody/SimTKcommon.h:32,
from /usr/include/simbody/SimTKsimbody.h:43,
from /<<PKGBUILDDIR>>/src/Compound.cpp:32:
/usr/include/c++/9/bits/stl_vector.h: In member function 'SimTK::Compound& SimTK::Compound::fitDefaultConfiguration(const AtomTargetLocations&, SimTK::Real, bool, SimTK::Real)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<SimTK::Vec<3>*, std::vector<SimTK::Vec<3> > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /usr/include/simbody/SimTKcommon/internal/Array.h:39,
from /usr/include/simbody/SimTKcommon/basics.h:53,
from /usr/include/simbody/SimTKcommon.h:32,
from /usr/include/simbody/SimTKsimbody.h:43,
from /<<PKGBUILDDIR>>/src/Compound.cpp:32:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {SimTK::AtomInfo}; _Tp = SimTK::AtomInfo; _Alloc = std::allocator<SimTK::AtomInfo>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<SimTK::AtomInfo>::iterator' {aka '__gnu_cxx::__normal_iterator<SimTK::AtomInfo*, std::vector<SimTK::AtomInfo> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'SimTK::CompoundRep& SimTK::CompoundRep::setBaseAtom(const AtomName&, const SimTK::Element&, const Transform&)':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<SimTK::AtomInfo*, std::vector<SimTK::AtomInfo> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const SimTK::AtomInfo&}; _Tp = SimTK::AtomInfo; _Alloc = std::allocator<SimTK::AtomInfo>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<SimTK::AtomInfo>::iterator' {aka '__gnu_cxx::__normal_iterator<SimTK::AtomInfo*, std::vector<SimTK::AtomInfo> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /usr/include/simbody/SimTKcommon/internal/Array.h:39,
from /usr/include/simbody/SimTKcommon/basics.h:53,
from /usr/include/simbody/SimTKcommon.h:32,
from /usr/include/simbody/SimTKsimbody.h:43,
from /<<PKGBUILDDIR>>/src/Compound.cpp:32:
/usr/include/c++/9/bits/stl_vector.h: In member function 'SimTK::Compound::BondCenterIndex SimTK::CompoundRep::absorbSubcompound(const Name&, const SimTK::Compound&, bool)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<SimTK::AtomInfo*, std::vector<SimTK::AtomInfo> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /usr/include/simbody/SimTKcommon/internal/Array.h:39,
from /usr/include/simbody/SimTKcommon/basics.h:53,
from /usr/include/simbody/SimTKcommon.h:32,
from /usr/include/simbody/SimTKsimbody.h:43,
from /<<PKGBUILDDIR>>/src/MolecularMechanicsSystem.cpp:37:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<const SimTK::MobilizedBody*, SimTK::Vec<2, SimTK::Vec<3, double, 1>, 1> >}; _Tp = std::pair<const SimTK::MobilizedBody*, SimTK::Vec<2, SimTK::Vec<3> > >; _Alloc = std::allocator<std::pair<const SimTK::MobilizedBody*, SimTK::Vec<2, SimTK::Vec<3> > > >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<std::pair<const SimTK::MobilizedBody*, SimTK::Vec<2, SimTK::Vec<3> > > >::iterator' {aka '__gnu_cxx::__normal_iterator<std::pair<const SimTK::MobilizedBody*, SimTK::Vec<2, SimTK::Vec<3> > >*, std::vector<std::pair<const SimTK::MobilizedBody*, SimTK::Vec<2, SimTK::Vec<3> > > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<const SimTK::MobilizedBody*, SimTK::Vec<3, double, 1> >}; _Tp = std::pair<const SimTK::MobilizedBody*, SimTK::Vec<3> >; _Alloc = std::allocator<std::pair<const SimTK::MobilizedBody*, SimTK::Vec<3> > >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<std::pair<const SimTK::MobilizedBody*, SimTK::Vec<3> > >::iterator' {aka '__gnu_cxx::__normal_iterator<std::pair<const SimTK::MobilizedBody*, SimTK::Vec<3> >*, std::vector<std::pair<const SimTK::MobilizedBody*, SimTK::Vec<3> > > >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function 'void SimTK::MolecularMechanicsSystem::moveSystemMassCenter(SimTK::State&, const Vec3&) const':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<const SimTK::MobilizedBody*, SimTK::Vec<3> >*, std::vector<std::pair<const SimTK::MobilizedBody*, SimTK::Vec<3> > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void SimTK::MolecularMechanicsSystem::removeSystemRigidBodyMomentum(SimTK::State&, bool) const':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<const SimTK::MobilizedBody*, SimTK::Vec<2, SimTK::Vec<3> > >*, std::vector<std::pair<const SimTK::MobilizedBody*, SimTK::Vec<2, SimTK::Vec<3> > > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[ 8%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/PDBReader.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/PDBReader.cpp.o -c "/<<PKGBUILDDIR>>/src/PDBReader.cpp"
[ 9%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/Pdb.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/Pdb.cpp.o -c "/<<PKGBUILDDIR>>/src/Pdb.cpp"
/usr/include/c++/9/bits/stl_vector.h: In member function 'void SimTK::Protein::loadFromPdbChain(const SimTK::PdbChain&, SimTK::Real)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<SimTK::Vec<3>*, std::vector<SimTK::Vec<3> > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /usr/include/simbody/SimTKcommon/internal/Array.h:39,
from /usr/include/simbody/SimTKcommon/basics.h:53,
from /usr/include/simbody/SimTKcommon.h:32,
from /<<PKGBUILDDIR>>/./include/molmodel/internal/common.h:40,
from /<<PKGBUILDDIR>>/./include/molmodel/internal/PDBReader.h:35,
from /<<PKGBUILDDIR>>/src/PDBReader.cpp:32:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {SimTK::Vec<3, double, 1>}; _Tp = SimTK::Vec<3>; _Alloc = std::allocator<SimTK::Vec<3> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<SimTK::Vec<3> >::iterator' {aka '__gnu_cxx::__normal_iterator<SimTK::Vec<3>*, std::vector<SimTK::Vec<3> > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {SimTK::Vec<3, double, 1>}; _Tp = SimTK::Vec<3>; _Alloc = std::allocator<SimTK::Vec<3> >]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<SimTK::Vec<3>*, std::vector<SimTK::Vec<3> > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[ 9%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/PeriodicVmdReporter.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/PeriodicVmdReporter.cpp.o -c "/<<PKGBUILDDIR>>/src/PeriodicVmdReporter.cpp"
[ 10%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/RiboseMobilizer.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/RiboseMobilizer.cpp.o -c "/<<PKGBUILDDIR>>/src/RiboseMobilizer.cpp"
[ 11%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/TinkerAmber99.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/TinkerAmber99.cpp.o -c "/<<PKGBUILDDIR>>/src/TinkerAmber99.cpp"
[ 11%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/VanderWallSphere.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/VanderWallSphere.cpp.o -c "/<<PKGBUILDDIR>>/src/VanderWallSphere.cpp"
[ 12%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/VelocityRescalingThermostat.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/VelocityRescalingThermostat.cpp.o -c "/<<PKGBUILDDIR>>/src/VelocityRescalingThermostat.cpp"
[ 13%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/VmdConnection.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/VmdConnection.cpp.o -c "/<<PKGBUILDDIR>>/src/VmdConnection.cpp"
[ 14%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/CpuImplicitSolvent.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/CpuImplicitSolvent.cpp.o -c "/<<PKGBUILDDIR>>/src/gbsa/CpuImplicitSolvent.cpp"
[ 14%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/CpuObc.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/CpuObc.cpp.o -c "/<<PKGBUILDDIR>>/src/gbsa/CpuObc.cpp"
[ 15%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/ImplicitSolventParameters.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/ImplicitSolventParameters.cpp.o -c "/<<PKGBUILDDIR>>/src/gbsa/ImplicitSolventParameters.cpp"
[ 16%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/ObcParameters.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/ObcParameters.cpp.o -c "/<<PKGBUILDDIR>>/src/gbsa/ObcParameters.cpp"
[ 16%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/SimTKOpenMMCommon.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/SimTKOpenMMCommon.cpp.o -c "/<<PKGBUILDDIR>>/src/gbsa/SimTKOpenMMCommon.cpp"
[ 17%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/SimTKOpenMMLog.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/SimTKOpenMMLog.cpp.o -c "/<<PKGBUILDDIR>>/src/gbsa/SimTKOpenMMLog.cpp"
[ 18%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/SimTKOpenMMUtilities.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/SimTKOpenMMUtilities.cpp.o -c "/<<PKGBUILDDIR>>/src/gbsa/SimTKOpenMMUtilities.cpp"
[ 19%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/cpuObcInterface.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/cpuObcInterface.cpp.o -c "/<<PKGBUILDDIR>>/src/gbsa/cpuObcInterface.cpp"
[ 19%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/imd.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/imd.cpp.o -c "/<<PKGBUILDDIR>>/src/imd.cpp"
[ 20%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/mol.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/mol.cpp.o -c "/<<PKGBUILDDIR>>/src/mol.cpp"
[ 21%] Building C object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/vmdsock.c.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/cc -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/vmdsock.c.o -c "/<<PKGBUILDDIR>>/src/vmdsock.c"
/<<PKGBUILDDIR>>/src/mol.cpp: In function 'void mol_msg(const char*, ...)':
/<<PKGBUILDDIR>>/src/mol.cpp:2290:26: warning: '%s' directive writing up to 999 bytes into a region of size between 1 and 1000 [-Wformat-overflow=]
2290 | sprintf (msg, "%s%s", msg, str);
| ^~ ~~~
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /<<PKGBUILDDIR>>/src/mol.h:14,
from /<<PKGBUILDDIR>>/src/mol.cpp:15:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 1 and 1999 bytes into a destination of size 1000
36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
37 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/mol.cpp:2281:26: warning: '%s' directive writing up to 999 bytes into a region of size between 1 and 1000 [-Wformat-overflow=]
2281 | sprintf (msg, "%s%s", msg, str);
| ^~ ~~~
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /<<PKGBUILDDIR>>/src/mol.h:14,
from /<<PKGBUILDDIR>>/src/mol.cpp:15:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 1 and 1999 bytes into a destination of size 1000
36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
37 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/mol.cpp:2272:25: warning: '%s' directive writing up to 999 bytes into a region of size between 1 and 1000 [-Wformat-overflow=]
2272 | sprintf (msg, "%s%s", msg, str);
| ^~ ~~~
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /<<PKGBUILDDIR>>/src/mol.h:14,
from /<<PKGBUILDDIR>>/src/mol.cpp:15:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 1 and 1999 bytes into a destination of size 1000
36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
37 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/mol.cpp:2263:26: warning: '%s' directive writing up to 999 bytes into a region of size between 1 and 1000 [-Wformat-overflow=]
2263 | sprintf (msg, "%s%s", msg, str);
| ^~ ~~~
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /<<PKGBUILDDIR>>/src/mol.h:14,
from /<<PKGBUILDDIR>>/src/mol.cpp:15:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 1 and 1999 bytes into a destination of size 1000
36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
37 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/mol.cpp:2254:26: warning: '%s' directive writing up to 999 bytes into a region of size between 1 and 1000 [-Wformat-overflow=]
2254 | sprintf (msg, "%s%s", msg, str);
| ^~ ~~~
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /<<PKGBUILDDIR>>/src/mol.h:14,
from /<<PKGBUILDDIR>>/src/mol.cpp:15:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 1 and 1999 bytes into a destination of size 1000
36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
37 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/mol.cpp: In function 'void mol_DbGromacsRead(MolModel*, FILE*)':
/<<PKGBUILDDIR>>/src/mol.cpp:1326:29: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=]
1326 | sprintf (atom_name, " %s", s);
| ^
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /<<PKGBUILDDIR>>/src/mol.h:14,
from /<<PKGBUILDDIR>>/src/mol.cpp:15:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 2 and 11 bytes into a destination of size 10
36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
37 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 21%] Linking CXX shared library ../libSimTKmolmodel.so
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/cmake -E cmake_link_script CMakeFiles/SimTKmolmodel.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -shared -Wl,-soname,libSimTKmolmodel.so.3.0 -o ../libSimTKmolmodel.so.3.0 CMakeFiles/SimTKmolmodel.dir/__/src/About.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/AtomSubsystem.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/Biotype.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/BondGeometry.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/Compound.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/CompoundSystem.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/DuMMForceFieldSubsystem.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/DuMMForceFieldSubsystemRep.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/Element.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/MolecularMechanicsSystem.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/PDBReader.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/Pdb.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/PeriodicVmdReporter.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/RiboseMobilizer.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/TinkerAmber99.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/VanderWallSphere.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/VelocityRescalingThermostat.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/VmdConnection.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/CpuImplicitSolvent.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/CpuObc.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/ImplicitSolventParameters.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/ObcParameters.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/SimTKOpenMMCommon.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/SimTKOpenMMLog.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/SimTKOpenMMUtilities.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/cpuObcInterface.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/imd.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/mol.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/vmdsock.c.o /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 -lmmdb2 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/cmake -E cmake_symlink_library ../libSimTKmolmodel.so.3.0 ../libSimTKmolmodel.so.3.0 ../libSimTKmolmodel.so
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make -f examples/CMakeFiles/ExampleAdenylateMobilitiesVMD.dir/build.make examples/CMakeFiles/ExampleAdenylateMobilitiesVMD.dir/depend
make -f examples/CMakeFiles/ExampleFoldPolyalanine.dir/build.make examples/CMakeFiles/ExampleFoldPolyalanine.dir/depend
make -f examples/CMakeFiles/ExampleAdenylateMobilitiesViz.dir/build.make examples/CMakeFiles/ExampleAdenylateMobilitiesViz.dir/depend
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cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/examples" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/examples" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleFoldPolyalanine.dir/DependInfo.cmake" --color=
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/examples" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/examples" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleAdenylateMobilitiesVMD.dir/DependInfo.cmake" --color=
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/examples" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/examples" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleAdenylateMobilitiesViz.dir/DependInfo.cmake" --color=
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/examples" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/examples" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleCreatePropane.dir/DependInfo.cmake" --color=
Scanning dependencies of target ExampleAdenylateMobilitiesViz
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make -f examples/CMakeFiles/ExampleCreatePropane.dir/build.make examples/CMakeFiles/ExampleCreatePropane.dir/build
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[ 22%] Building CXX object examples/CMakeFiles/ExampleAdenylateMobilitiesVMD.dir/ExampleAdenylateMobilitiesVMD.cpp.o
[ 22%] Building CXX object examples/CMakeFiles/ExampleFoldPolyalanine.dir/ExampleFoldPolyalanine.cpp.o
[ 23%] Building CXX object examples/CMakeFiles/ExampleAdenylateMobilitiesViz.dir/ExampleAdenylateMobilitiesViz.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ExampleFoldPolyalanine.dir/ExampleFoldPolyalanine.cpp.o -c "/<<PKGBUILDDIR>>/examples/ExampleFoldPolyalanine.cpp"
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ExampleAdenylateMobilitiesVMD.dir/ExampleAdenylateMobilitiesVMD.cpp.o -c "/<<PKGBUILDDIR>>/examples/ExampleAdenylateMobilitiesVMD.cpp"
[ 24%] Building CXX object examples/CMakeFiles/ExampleCreatePropane.dir/ExampleCreatePropane.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ExampleAdenylateMobilitiesViz.dir/ExampleAdenylateMobilitiesViz.cpp.o -c "/<<PKGBUILDDIR>>/examples/ExampleAdenylateMobilitiesViz.cpp"
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ExampleCreatePropane.dir/ExampleCreatePropane.cpp.o -c "/<<PKGBUILDDIR>>/examples/ExampleCreatePropane.cpp"
[ 25%] Linking CXX executable ../ExampleCreatePropane
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleCreatePropane.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleCreatePropane.dir/ExampleCreatePropane.cpp.o -o ../ExampleCreatePropane -Wl,-rpath,"/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf:" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2
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make -f examples/CMakeFiles/MolmodelInstallTest.dir/build.make examples/CMakeFiles/MolmodelInstallTest.dir/depend
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cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/examples" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/examples" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/examples/CMakeFiles/MolmodelInstallTest.dir/DependInfo.cmake" --color=
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[ 26%] Building CXX object examples/CMakeFiles/MolmodelInstallTest.dir/MolmodelInstallTest.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/MolmodelInstallTest.dir/MolmodelInstallTest.cpp.o -c "/<<PKGBUILDDIR>>/examples/MolmodelInstallTest.cpp"
[ 26%] Linking CXX executable ../ExampleAdenylateMobilitiesViz
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleAdenylateMobilitiesViz.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleAdenylateMobilitiesViz.dir/ExampleAdenylateMobilitiesViz.cpp.o -o ../ExampleAdenylateMobilitiesViz -Wl,-rpath,"/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf:" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2
[ 27%] Linking CXX executable ../ExampleAdenylateMobilitiesVMD
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleAdenylateMobilitiesVMD.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleAdenylateMobilitiesVMD.dir/ExampleAdenylateMobilitiesVMD.cpp.o -o ../ExampleAdenylateMobilitiesVMD -Wl,-rpath,"/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf:" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2
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make -f examples/CMakeFiles/ExampleLoadPdb2.dir/build.make examples/CMakeFiles/ExampleLoadPdb2.dir/depend
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cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/examples" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/examples" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleLoadPdb2.dir/DependInfo.cmake" --color=
Scanning dependencies of target ExampleLoadPdb2
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[ 27%] Building CXX object examples/CMakeFiles/ExampleLoadPdb2.dir/ExampleLoadPdb2.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ExampleLoadPdb2.dir/ExampleLoadPdb2.cpp.o -c "/<<PKGBUILDDIR>>/examples/ExampleLoadPdb2.cpp"
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cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/examples" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/examples" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleTwoArgonAtoms.dir/DependInfo.cmake" --color=
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[ 28%] Building CXX object examples/CMakeFiles/ExampleTwoArgonAtoms.dir/ExampleTwoArgonAtoms.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ExampleTwoArgonAtoms.dir/ExampleTwoArgonAtoms.cpp.o -c "/<<PKGBUILDDIR>>/examples/ExampleTwoArgonAtoms.cpp"
[ 28%] Linking CXX executable ../ExampleFoldPolyalanine
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleFoldPolyalanine.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleFoldPolyalanine.dir/ExampleFoldPolyalanine.cpp.o -o ../ExampleFoldPolyalanine -Wl,-rpath,"/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf:" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
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make -f examples/CMakeFiles/ExampleRigidProtein.dir/build.make examples/CMakeFiles/ExampleRigidProtein.dir/depend
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cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/examples" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/examples" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleRigidProtein.dir/DependInfo.cmake" --color=
Scanning dependencies of target ExampleRigidProtein
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[ 29%] Building CXX object examples/CMakeFiles/ExampleRigidProtein.dir/ExampleRigidProtein.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ExampleRigidProtein.dir/ExampleRigidProtein.cpp.o -c "/<<PKGBUILDDIR>>/examples/ExampleRigidProtein.cpp"
[ 30%] Linking CXX executable ../ExampleTwoArgonAtoms
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleTwoArgonAtoms.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleTwoArgonAtoms.dir/ExampleTwoArgonAtoms.cpp.o -o ../ExampleTwoArgonAtoms -Wl,-rpath,"/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf:" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2
[ 31%] Linking CXX executable ../ExampleLoadPdb2
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleLoadPdb2.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleLoadPdb2.dir/ExampleLoadPdb2.cpp.o -o ../ExampleLoadPdb2 -Wl,-rpath,"/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf:" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 31%] Built target ExampleTwoArgonAtoms
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make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/examples" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/examples" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleSimpleProtein.dir/DependInfo.cmake" --color=
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[ 31%] Building CXX object examples/CMakeFiles/ExampleSimpleProtein.dir/ExampleSimpleProtein.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ExampleSimpleProtein.dir/ExampleSimpleProtein.cpp.o -c "/<<PKGBUILDDIR>>/examples/ExampleSimpleProtein.cpp"
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 31%] Built target ExampleLoadPdb2
make -f examples/CMakeFiles/ExampleSimpleRNA.dir/build.make examples/CMakeFiles/ExampleSimpleRNA.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/examples" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/examples" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleSimpleRNA.dir/DependInfo.cmake" --color=
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[ 32%] Building CXX object examples/CMakeFiles/ExampleSimpleRNA.dir/ExampleSimpleRNA.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ExampleSimpleRNA.dir/ExampleSimpleRNA.cpp.o -c "/<<PKGBUILDDIR>>/examples/ExampleSimpleRNA.cpp"
[ 33%] Linking CXX executable ../MolmodelInstallTest
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolmodelInstallTest.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/MolmodelInstallTest.dir/MolmodelInstallTest.cpp.o -o ../MolmodelInstallTest -Wl,-rpath,"/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf:" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2
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make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/examples" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/examples" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleTwoEthanes.dir/DependInfo.cmake" --color=
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[ 34%] Building CXX object examples/CMakeFiles/ExampleTwoEthanes.dir/ExampleTwoEthanes.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ExampleTwoEthanes.dir/ExampleTwoEthanes.cpp.o -c "/<<PKGBUILDDIR>>/examples/ExampleTwoEthanes.cpp"
[ 35%] Linking CXX executable ../ExampleRigidProtein
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleRigidProtein.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleRigidProtein.dir/ExampleRigidProtein.cpp.o -o ../ExampleRigidProtein -Wl,-rpath,"/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf:" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2
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cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/examples" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/examples" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleLoadPdb.dir/DependInfo.cmake" --color=
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make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 36%] Building CXX object examples/CMakeFiles/ExampleLoadPdb.dir/ExampleLoadPdb.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ExampleLoadPdb.dir/ExampleLoadPdb.cpp.o -c "/<<PKGBUILDDIR>>/examples/ExampleLoadPdb.cpp"
[ 36%] Linking CXX executable ../ExampleTwoEthanes
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleTwoEthanes.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleTwoEthanes.dir/ExampleTwoEthanes.cpp.o -o ../ExampleTwoEthanes -Wl,-rpath,"/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf:" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2
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[ 36%] Built target ExampleTwoEthanes
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make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/examples" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/examples" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/examples/CMakeFiles/MolmodelInstallTestNoViz.dir/DependInfo.cmake" --color=
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[ 36%] Building CXX object examples/CMakeFiles/MolmodelInstallTestNoViz.dir/MolmodelInstallTestNoViz.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/MolmodelInstallTestNoViz.dir/MolmodelInstallTestNoViz.cpp.o -c "/<<PKGBUILDDIR>>/examples/MolmodelInstallTestNoViz.cpp"
[ 37%] Linking CXX executable ../ExampleSimpleProtein
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleSimpleProtein.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleSimpleProtein.dir/ExampleSimpleProtein.cpp.o -o ../ExampleSimpleProtein -Wl,-rpath,"/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf:" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2
[ 37%] Linking CXX executable ../ExampleSimpleRNA
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleSimpleRNA.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleSimpleRNA.dir/ExampleSimpleRNA.cpp.o -o ../ExampleSimpleRNA -Wl,-rpath,"/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf:" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2
[ 38%] Linking CXX executable ../ExampleLoadPdb
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleLoadPdb.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleLoadPdb.dir/ExampleLoadPdb.cpp.o -o ../ExampleLoadPdb -Wl,-rpath,"/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf:" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2
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[ 38%] Built target ExampleSimpleProtein
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make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestWriteSimtimePdb.dir/DependInfo.cmake" --color=
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make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 39%] Building CXX object tests/CMakeFiles/TestWriteSimtimePdb.dir/TestWriteSimtimePdb.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestWriteSimtimePdb.dir/TestWriteSimtimePdb.cpp.o -c "/<<PKGBUILDDIR>>/tests/TestWriteSimtimePdb.cpp"
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 39%] Built target ExampleSimpleRNA
make -f tests/CMakeFiles/TestTorsionPartitioner.dir/build.make tests/CMakeFiles/TestTorsionPartitioner.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestTorsionPartitioner.dir/DependInfo.cmake" --color=
[ 39%] Built target ExampleLoadPdb
make -f tests/CMakeFiles/TestTinkerAmber.dir/build.make tests/CMakeFiles/TestTinkerAmber.dir/depend
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cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestTinkerAmber.dir/DependInfo.cmake" --color=
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make -f tests/CMakeFiles/TestTinkerAmber.dir/build.make tests/CMakeFiles/TestTinkerAmber.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 40%] Building CXX object tests/CMakeFiles/TestTorsionPartitioner.dir/TestTorsionPartitioner.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestTorsionPartitioner.dir/TestTorsionPartitioner.cpp.o -c "/<<PKGBUILDDIR>>/tests/TestTorsionPartitioner.cpp"
[ 41%] Building CXX object tests/CMakeFiles/TestTinkerAmber.dir/TestTinkerAmber.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestTinkerAmber.dir/TestTinkerAmber.cpp.o -c "/<<PKGBUILDDIR>>/tests/TestTinkerAmber.cpp"
[ 41%] Linking CXX executable ../TestTinkerAmber
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestTinkerAmber.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestTinkerAmber.dir/TestTinkerAmber.cpp.o -o ../TestTinkerAmber -Wl,-rpath,"/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 41%] Built target TestTinkerAmber
make -f tests/CMakeFiles/TestVelocityRescalingThermostat.dir/build.make tests/CMakeFiles/TestVelocityRescalingThermostat.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestVelocityRescalingThermostat.dir/DependInfo.cmake" --color=
Scanning dependencies of target TestVelocityRescalingThermostat
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[ 42%] Building CXX object tests/CMakeFiles/TestVelocityRescalingThermostat.dir/TestVelocityRescalingThermostat.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestVelocityRescalingThermostat.dir/TestVelocityRescalingThermostat.cpp.o -c "/<<PKGBUILDDIR>>/tests/TestVelocityRescalingThermostat.cpp"
[ 43%] Linking CXX executable ../MolmodelInstallTestNoViz
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolmodelInstallTestNoViz.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/MolmodelInstallTestNoViz.dir/MolmodelInstallTestNoViz.cpp.o -o ../MolmodelInstallTestNoViz -Wl,-rpath,"/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf:" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 43%] Built target MolmodelInstallTestNoViz
make -f tests/CMakeFiles/TestShortPdbLines.dir/build.make tests/CMakeFiles/TestShortPdbLines.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestShortPdbLines.dir/DependInfo.cmake" --color=
Scanning dependencies of target TestShortPdbLines
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f tests/CMakeFiles/TestShortPdbLines.dir/build.make tests/CMakeFiles/TestShortPdbLines.dir/build
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[ 43%] Building CXX object tests/CMakeFiles/TestShortPdbLines.dir/TestShortPdbLines.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestShortPdbLines.dir/TestShortPdbLines.cpp.o -c "/<<PKGBUILDDIR>>/tests/TestShortPdbLines.cpp"
[ 44%] Linking CXX executable ../TestWriteSimtimePdb
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestWriteSimtimePdb.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestWriteSimtimePdb.dir/TestWriteSimtimePdb.cpp.o -o ../TestWriteSimtimePdb -Wl,-rpath,"/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 44%] Built target TestWriteSimtimePdb
make -f tests/CMakeFiles/TestGbsa.dir/build.make tests/CMakeFiles/TestGbsa.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestGbsa.dir/DependInfo.cmake" --color=
Scanning dependencies of target TestGbsa
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f tests/CMakeFiles/TestGbsa.dir/build.make tests/CMakeFiles/TestGbsa.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 44%] Building CXX object tests/CMakeFiles/TestGbsa.dir/TestGbsa.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestGbsa.dir/TestGbsa.cpp.o -c "/<<PKGBUILDDIR>>/tests/TestGbsa.cpp"
[ 45%] Linking CXX executable ../TestTorsionPartitioner
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestTorsionPartitioner.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestTorsionPartitioner.dir/TestTorsionPartitioner.cpp.o -o ../TestTorsionPartitioner -Wl,-rpath,"/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 45%] Built target TestTorsionPartitioner
make -f tests/CMakeFiles/TestGetAtomName.dir/build.make tests/CMakeFiles/TestGetAtomName.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestGetAtomName.dir/DependInfo.cmake" --color=
Scanning dependencies of target TestGetAtomName
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f tests/CMakeFiles/TestGetAtomName.dir/build.make tests/CMakeFiles/TestGetAtomName.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 46%] Building CXX object tests/CMakeFiles/TestGetAtomName.dir/TestGetAtomName.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestGetAtomName.dir/TestGetAtomName.cpp.o -c "/<<PKGBUILDDIR>>/tests/TestGetAtomName.cpp"
[ 46%] Linking CXX executable ../TestVelocityRescalingThermostat
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestVelocityRescalingThermostat.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestVelocityRescalingThermostat.dir/TestVelocityRescalingThermostat.cpp.o -o ../TestVelocityRescalingThermostat -Wl,-rpath,"/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 46%] Built target TestVelocityRescalingThermostat
make -f tests/CMakeFiles/TestProteinDihedrals.dir/build.make tests/CMakeFiles/TestProteinDihedrals.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestProteinDihedrals.dir/DependInfo.cmake" --color=
Scanning dependencies of target TestProteinDihedrals
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f tests/CMakeFiles/TestProteinDihedrals.dir/build.make tests/CMakeFiles/TestProteinDihedrals.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 46%] Building CXX object tests/CMakeFiles/TestProteinDihedrals.dir/TestProteinDihedrals.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestProteinDihedrals.dir/TestProteinDihedrals.cpp.o -c "/<<PKGBUILDDIR>>/tests/TestProteinDihedrals.cpp"
[ 47%] Linking CXX executable ../TestShortPdbLines
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestShortPdbLines.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestShortPdbLines.dir/TestShortPdbLines.cpp.o -o ../TestShortPdbLines -Wl,-rpath,"/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 47%] Built target TestShortPdbLines
make -f tests/CMakeFiles/TestDuMMForces.dir/build.make tests/CMakeFiles/TestDuMMForces.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestDuMMForces.dir/DependInfo.cmake" --color=
Scanning dependencies of target TestDuMMForces
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f tests/CMakeFiles/TestDuMMForces.dir/build.make tests/CMakeFiles/TestDuMMForces.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 47%] Building CXX object tests/CMakeFiles/TestDuMMForces.dir/TestDuMMForces.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestDuMMForces.dir/TestDuMMForces.cpp.o -c "/<<PKGBUILDDIR>>/tests/TestDuMMForces.cpp"
[ 48%] Linking CXX executable ../TestGbsa
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestGbsa.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestGbsa.dir/TestGbsa.cpp.o -o ../TestGbsa -Wl,-rpath,"/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 48%] Built target TestGbsa
make -f tests/CMakeFiles/TestForeignBodyIds.dir/build.make tests/CMakeFiles/TestForeignBodyIds.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestForeignBodyIds.dir/DependInfo.cmake" --color=
Scanning dependencies of target TestForeignBodyIds
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f tests/CMakeFiles/TestForeignBodyIds.dir/build.make tests/CMakeFiles/TestForeignBodyIds.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 49%] Building CXX object tests/CMakeFiles/TestForeignBodyIds.dir/TestForeignBodyIds.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestForeignBodyIds.dir/TestForeignBodyIds.cpp.o -c "/<<PKGBUILDDIR>>/tests/TestForeignBodyIds.cpp"
[ 50%] Linking CXX executable ../TestGetAtomName
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestGetAtomName.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestGetAtomName.dir/TestGetAtomName.cpp.o -o ../TestGetAtomName -Wl,-rpath,"/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 50%] Built target TestGetAtomName
make -f tests/CMakeFiles/TestRna.dir/build.make tests/CMakeFiles/TestRna.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestRna.dir/DependInfo.cmake" --color=
Scanning dependencies of target TestRna
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f tests/CMakeFiles/TestRna.dir/build.make tests/CMakeFiles/TestRna.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 50%] Building CXX object tests/CMakeFiles/TestRna.dir/TestRna.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestRna.dir/TestRna.cpp.o -c "/<<PKGBUILDDIR>>/tests/TestRna.cpp"
[ 51%] Linking CXX executable ../TestProteinDihedrals
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestProteinDihedrals.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestProteinDihedrals.dir/TestProteinDihedrals.cpp.o -o ../TestProteinDihedrals -Wl,-rpath,"/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 51%] Built target TestProteinDihedrals
make -f tests/CMakeFiles/TestLoneAtomCoordinates.dir/build.make tests/CMakeFiles/TestLoneAtomCoordinates.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestLoneAtomCoordinates.dir/DependInfo.cmake" --color=
Scanning dependencies of target TestLoneAtomCoordinates
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f tests/CMakeFiles/TestLoneAtomCoordinates.dir/build.make tests/CMakeFiles/TestLoneAtomCoordinates.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 52%] Building CXX object tests/CMakeFiles/TestLoneAtomCoordinates.dir/TestLoneAtomCoordinates.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestLoneAtomCoordinates.dir/TestLoneAtomCoordinates.cpp.o -c "/<<PKGBUILDDIR>>/tests/TestLoneAtomCoordinates.cpp"
[ 53%] Linking CXX executable ../TestDuMMForces
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestDuMMForces.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestDuMMForces.dir/TestDuMMForces.cpp.o -o ../TestDuMMForces -Wl,-rpath,"/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 53%] Built target TestDuMMForces
make -f tests/CMakeFiles/TestCompoundTransforms.dir/build.make tests/CMakeFiles/TestCompoundTransforms.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestCompoundTransforms.dir/DependInfo.cmake" --color=
Scanning dependencies of target TestCompoundTransforms
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f tests/CMakeFiles/TestCompoundTransforms.dir/build.make tests/CMakeFiles/TestCompoundTransforms.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 54%] Building CXX object tests/CMakeFiles/TestCompoundTransforms.dir/TestCompoundTransforms.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestCompoundTransforms.dir/TestCompoundTransforms.cpp.o -c "/<<PKGBUILDDIR>>/tests/TestCompoundTransforms.cpp"
[ 55%] Linking CXX executable ../TestForeignBodyIds
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestForeignBodyIds.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestForeignBodyIds.dir/TestForeignBodyIds.cpp.o -o ../TestForeignBodyIds -Wl,-rpath,"/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 55%] Built target TestForeignBodyIds
make -f tests/CMakeFiles/TestProtein.dir/build.make tests/CMakeFiles/TestProtein.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestProtein.dir/DependInfo.cmake" --color=
Scanning dependencies of target TestProtein
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f tests/CMakeFiles/TestProtein.dir/build.make tests/CMakeFiles/TestProtein.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 56%] Building CXX object tests/CMakeFiles/TestProtein.dir/TestProtein.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestProtein.dir/TestProtein.cpp.o -c "/<<PKGBUILDDIR>>/tests/TestProtein.cpp"
[ 56%] Linking CXX executable ../TestLoneAtomCoordinates
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestLoneAtomCoordinates.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestLoneAtomCoordinates.dir/TestLoneAtomCoordinates.cpp.o -o ../TestLoneAtomCoordinates -Wl,-rpath,"/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 56%] Built target TestLoneAtomCoordinates
make -f tests/CMakeFiles/TestBiotypeSelfCode.dir/build.make tests/CMakeFiles/TestBiotypeSelfCode.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestBiotypeSelfCode.dir/DependInfo.cmake" --color=
Scanning dependencies of target TestBiotypeSelfCode
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f tests/CMakeFiles/TestBiotypeSelfCode.dir/build.make tests/CMakeFiles/TestBiotypeSelfCode.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 57%] Building CXX object tests/CMakeFiles/TestBiotypeSelfCode.dir/TestBiotypeSelfCode.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestBiotypeSelfCode.dir/TestBiotypeSelfCode.cpp.o -c "/<<PKGBUILDDIR>>/tests/TestBiotypeSelfCode.cpp"
[ 58%] Linking CXX executable ../TestRna
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestRna.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestRna.dir/TestRna.cpp.o -o ../TestRna -Wl,-rpath,"/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 58%] Built target TestRna
make -f tests/CMakeFiles/TestWriteDefaultPdb.dir/build.make tests/CMakeFiles/TestWriteDefaultPdb.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestWriteDefaultPdb.dir/DependInfo.cmake" --color=
Scanning dependencies of target TestWriteDefaultPdb
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f tests/CMakeFiles/TestWriteDefaultPdb.dir/build.make tests/CMakeFiles/TestWriteDefaultPdb.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 59%] Building CXX object tests/CMakeFiles/TestWriteDefaultPdb.dir/TestWriteDefaultPdb.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestWriteDefaultPdb.dir/TestWriteDefaultPdb.cpp.o -c "/<<PKGBUILDDIR>>/tests/TestWriteDefaultPdb.cpp"
[ 60%] Linking CXX executable ../TestCompoundTransforms
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCompoundTransforms.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestCompoundTransforms.dir/TestCompoundTransforms.cpp.o -o ../TestCompoundTransforms -Wl,-rpath,"/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 60%] Built target TestCompoundTransforms
make -f tests/CMakeFiles/TestEthane.dir/build.make tests/CMakeFiles/TestEthane.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestEthane.dir/DependInfo.cmake" --color=
Scanning dependencies of target TestEthane
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f tests/CMakeFiles/TestEthane.dir/build.make tests/CMakeFiles/TestEthane.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 61%] Building CXX object tests/CMakeFiles/TestEthane.dir/TestEthane.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestEthane.dir/TestEthane.cpp.o -c "/<<PKGBUILDDIR>>/tests/TestEthane.cpp"
[ 62%] Linking CXX executable ../TestBiotypeSelfCode
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestBiotypeSelfCode.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestBiotypeSelfCode.dir/TestBiotypeSelfCode.cpp.o -o ../TestBiotypeSelfCode -Wl,-rpath,"/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 62%] Built target TestBiotypeSelfCode
make -f tests/CMakeFiles/TestLoadVariantRnaAtomNames.dir/build.make tests/CMakeFiles/TestLoadVariantRnaAtomNames.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestLoadVariantRnaAtomNames.dir/DependInfo.cmake" --color=
Scanning dependencies of target TestLoadVariantRnaAtomNames
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f tests/CMakeFiles/TestLoadVariantRnaAtomNames.dir/build.make tests/CMakeFiles/TestLoadVariantRnaAtomNames.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 62%] Building CXX object tests/CMakeFiles/TestLoadVariantRnaAtomNames.dir/TestLoadVariantRnaAtomNames.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestLoadVariantRnaAtomNames.dir/TestLoadVariantRnaAtomNames.cpp.o -c "/<<PKGBUILDDIR>>/tests/TestLoadVariantRnaAtomNames.cpp"
[ 63%] Linking CXX executable ../TestProtein
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestProtein.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestProtein.dir/TestProtein.cpp.o -o ../TestProtein -Wl,-rpath,"/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 63%] Built target TestProtein
make -f tests/CMakeFiles/TestBiopolymer.dir/build.make tests/CMakeFiles/TestBiopolymer.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestBiopolymer.dir/DependInfo.cmake" --color=
Scanning dependencies of target TestBiopolymer
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[ 64%] Building CXX object tests/CMakeFiles/TestBiopolymer.dir/TestBiopolymer.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestBiopolymer.dir/TestBiopolymer.cpp.o -c "/<<PKGBUILDDIR>>/tests/TestBiopolymer.cpp"
[ 65%] Linking CXX executable ../TestWriteDefaultPdb
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestWriteDefaultPdb.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestWriteDefaultPdb.dir/TestWriteDefaultPdb.cpp.o -o ../TestWriteDefaultPdb -Wl,-rpath,"/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 65%] Built target TestWriteDefaultPdb
make -f tests/CMakeFiles/TestBodyIds.dir/build.make tests/CMakeFiles/TestBodyIds.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestBodyIds.dir/DependInfo.cmake" --color=
Scanning dependencies of target TestBodyIds
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
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make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 65%] Building CXX object tests/CMakeFiles/TestBodyIds.dir/TestBodyIds.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestBodyIds.dir/TestBodyIds.cpp.o -c "/<<PKGBUILDDIR>>/tests/TestBodyIds.cpp"
[ 66%] Linking CXX executable ../TestLoadVariantRnaAtomNames
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestLoadVariantRnaAtomNames.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestLoadVariantRnaAtomNames.dir/TestLoadVariantRnaAtomNames.cpp.o -o ../TestLoadVariantRnaAtomNames -Wl,-rpath,"/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 66%] Built target TestLoadVariantRnaAtomNames
make -f tests/CMakeFiles/TestAtomTargetLocations.dir/build.make tests/CMakeFiles/TestAtomTargetLocations.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestAtomTargetLocations.dir/DependInfo.cmake" --color=
Scanning dependencies of target TestAtomTargetLocations
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f tests/CMakeFiles/TestAtomTargetLocations.dir/build.make tests/CMakeFiles/TestAtomTargetLocations.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 67%] Building CXX object tests/CMakeFiles/TestAtomTargetLocations.dir/TestAtomTargetLocations.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestAtomTargetLocations.dir/TestAtomTargetLocations.cpp.o -c "/<<PKGBUILDDIR>>/tests/TestAtomTargetLocations.cpp"
[ 67%] Linking CXX executable ../TestEthane
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestEthane.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestEthane.dir/TestEthane.cpp.o -o ../TestEthane -Wl,-rpath,"/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 67%] Built target TestEthane
make -f tests/CMakeFiles/TestMethaneCartesian.dir/build.make tests/CMakeFiles/TestMethaneCartesian.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestMethaneCartesian.dir/DependInfo.cmake" --color=
Scanning dependencies of target TestMethaneCartesian
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f tests/CMakeFiles/TestMethaneCartesian.dir/build.make tests/CMakeFiles/TestMethaneCartesian.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 68%] Building CXX object tests/CMakeFiles/TestMethaneCartesian.dir/TestMethaneCartesian.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestMethaneCartesian.dir/TestMethaneCartesian.cpp.o -c "/<<PKGBUILDDIR>>/tests/TestMethaneCartesian.cpp"
[ 68%] Linking CXX executable ../TestBiopolymer
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestBiopolymer.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestBiopolymer.dir/TestBiopolymer.cpp.o -o ../TestBiopolymer -Wl,-rpath,"/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 68%] Built target TestBiopolymer
make -f tests/CMakeFiles/TestPartitionerDihedrals.dir/build.make tests/CMakeFiles/TestPartitionerDihedrals.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestPartitionerDihedrals.dir/DependInfo.cmake" --color=
Scanning dependencies of target TestPartitionerDihedrals
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
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make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 69%] Building CXX object tests/CMakeFiles/TestPartitionerDihedrals.dir/TestPartitionerDihedrals.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestPartitionerDihedrals.dir/TestPartitionerDihedrals.cpp.o -c "/<<PKGBUILDDIR>>/tests/TestPartitionerDihedrals.cpp"
[ 70%] Linking CXX executable ../TestBodyIds
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestBodyIds.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestBodyIds.dir/TestBodyIds.cpp.o -o ../TestBodyIds -Wl,-rpath,"/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 70%] Built target TestBodyIds
make -f tests/CMakeFiles/TestSetTorsion.dir/build.make tests/CMakeFiles/TestSetTorsion.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestSetTorsion.dir/DependInfo.cmake" --color=
Scanning dependencies of target TestSetTorsion
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f tests/CMakeFiles/TestSetTorsion.dir/build.make tests/CMakeFiles/TestSetTorsion.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 71%] Building CXX object tests/CMakeFiles/TestSetTorsion.dir/TestSetTorsion.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestSetTorsion.dir/TestSetTorsion.cpp.o -c "/<<PKGBUILDDIR>>/tests/TestSetTorsion.cpp"
[ 72%] Linking CXX executable ../TestMethaneCartesian
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestMethaneCartesian.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestMethaneCartesian.dir/TestMethaneCartesian.cpp.o -o ../TestMethaneCartesian -Wl,-rpath,"/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 72%] Built target TestMethaneCartesian
make -f tests/CMakeFiles/TestNoseHooverThermostat.dir/build.make tests/CMakeFiles/TestNoseHooverThermostat.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestNoseHooverThermostat.dir/DependInfo.cmake" --color=
Scanning dependencies of target TestNoseHooverThermostat
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f tests/CMakeFiles/TestNoseHooverThermostat.dir/build.make tests/CMakeFiles/TestNoseHooverThermostat.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 72%] Building CXX object tests/CMakeFiles/TestNoseHooverThermostat.dir/TestNoseHooverThermostat.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestNoseHooverThermostat.dir/TestNoseHooverThermostat.cpp.o -c "/<<PKGBUILDDIR>>/tests/TestNoseHooverThermostat.cpp"
[ 73%] Linking CXX executable ../TestAtomTargetLocations
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestAtomTargetLocations.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestAtomTargetLocations.dir/TestAtomTargetLocations.cpp.o -o ../TestAtomTargetLocations -Wl,-rpath,"/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2
[ 74%] Linking CXX executable ../TestPartitionerDihedrals
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestPartitionerDihedrals.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestPartitionerDihedrals.dir/TestPartitionerDihedrals.cpp.o -o ../TestPartitionerDihedrals -Wl,-rpath,"/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 74%] Built target TestAtomTargetLocations
make -f tests/CMakeFiles/TestNucleotide2.dir/build.make tests/CMakeFiles/TestNucleotide2.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestNucleotide2.dir/DependInfo.cmake" --color=
Scanning dependencies of target TestNucleotide2
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f tests/CMakeFiles/TestNucleotide2.dir/build.make tests/CMakeFiles/TestNucleotide2.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 75%] Building CXX object tests/CMakeFiles/TestNucleotide2.dir/TestNucleotide2.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestNucleotide2.dir/TestNucleotide2.cpp.o -c "/<<PKGBUILDDIR>>/tests/TestNucleotide2.cpp"
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 75%] Built target TestPartitionerDihedrals
make -f tests/CMakeFiles/TestRiboseMobilizer.dir/build.make tests/CMakeFiles/TestRiboseMobilizer.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestRiboseMobilizer.dir/DependInfo.cmake" --color=
Scanning dependencies of target TestRiboseMobilizer
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f tests/CMakeFiles/TestRiboseMobilizer.dir/build.make tests/CMakeFiles/TestRiboseMobilizer.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 76%] Building CXX object tests/CMakeFiles/TestRiboseMobilizer.dir/TestRiboseMobilizer.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestRiboseMobilizer.dir/TestRiboseMobilizer.cpp.o -c "/<<PKGBUILDDIR>>/tests/TestRiboseMobilizer.cpp"
In file included from /usr/include/c++/9/vector:72,
from /usr/include/simbody/SimTKcommon/internal/Array.h:39,
from /usr/include/simbody/SimTKcommon/basics.h:53,
from /usr/include/simbody/SimTKcommon.h:32,
from /usr/include/simbody/Simbody.h:38,
from /<<PKGBUILDDIR>>/./include/SimTKmolmodel.h:47,
from /<<PKGBUILDDIR>>/tests/TestRiboseMobilizer.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'virtual void PeriodicTorsionMeasurer::handleEvent(const SimTK::State&) const':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[ 77%] Linking CXX executable ../TestSetTorsion
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSetTorsion.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestSetTorsion.dir/TestSetTorsion.cpp.o -o ../TestSetTorsion -Wl,-rpath,"/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 77%] Built target TestSetTorsion
make -f tests/CMakeFiles/TestMethanol.dir/build.make tests/CMakeFiles/TestMethanol.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestMethanol.dir/DependInfo.cmake" --color=
Scanning dependencies of target TestMethanol
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f tests/CMakeFiles/TestMethanol.dir/build.make tests/CMakeFiles/TestMethanol.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 78%] Building CXX object tests/CMakeFiles/TestMethanol.dir/TestMethanol.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestMethanol.dir/TestMethanol.cpp.o -c "/<<PKGBUILDDIR>>/tests/TestMethanol.cpp"
[ 79%] Linking CXX executable ../TestRiboseMobilizer
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestRiboseMobilizer.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestRiboseMobilizer.dir/TestRiboseMobilizer.cpp.o -o ../TestRiboseMobilizer -Wl,-rpath,"/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2
[ 80%] Linking CXX executable ../TestNoseHooverThermostat
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestNoseHooverThermostat.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestNoseHooverThermostat.dir/TestNoseHooverThermostat.cpp.o -o ../TestNoseHooverThermostat -Wl,-rpath,"/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 80%] Built target TestRiboseMobilizer
make -f tests/CMakeFiles/TestOxygenMolecule.dir/build.make tests/CMakeFiles/TestOxygenMolecule.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestOxygenMolecule.dir/DependInfo.cmake" --color=
Scanning dependencies of target TestOxygenMolecule
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f tests/CMakeFiles/TestOxygenMolecule.dir/build.make tests/CMakeFiles/TestOxygenMolecule.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 80%] Building CXX object tests/CMakeFiles/TestOxygenMolecule.dir/TestOxygenMolecule.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestOxygenMolecule.dir/TestOxygenMolecule.cpp.o -c "/<<PKGBUILDDIR>>/tests/TestOxygenMolecule.cpp"
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 80%] Built target TestNoseHooverThermostat
make -f tests/CMakeFiles/TestPartitioner.dir/build.make tests/CMakeFiles/TestPartitioner.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestPartitioner.dir/DependInfo.cmake" --color=
Scanning dependencies of target TestPartitioner
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f tests/CMakeFiles/TestPartitioner.dir/build.make tests/CMakeFiles/TestPartitioner.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 81%] Building CXX object tests/CMakeFiles/TestPartitioner.dir/TestPartitioner.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestPartitioner.dir/TestPartitioner.cpp.o -c "/<<PKGBUILDDIR>>/tests/TestPartitioner.cpp"
[ 82%] Linking CXX executable ../TestNucleotide2
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestNucleotide2.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestNucleotide2.dir/TestNucleotide2.cpp.o -o ../TestNucleotide2 -Wl,-rpath,"/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 82%] Built target TestNucleotide2
make -f tests/CMakeFiles/TestFitMagnesiums.dir/build.make tests/CMakeFiles/TestFitMagnesiums.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestFitMagnesiums.dir/DependInfo.cmake" --color=
Scanning dependencies of target TestFitMagnesiums
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f tests/CMakeFiles/TestFitMagnesiums.dir/build.make tests/CMakeFiles/TestFitMagnesiums.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 83%] Building CXX object tests/CMakeFiles/TestFitMagnesiums.dir/TestFitMagnesiums.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestFitMagnesiums.dir/TestFitMagnesiums.cpp.o -c "/<<PKGBUILDDIR>>/tests/TestFitMagnesiums.cpp"
[ 83%] Linking CXX executable ../TestMethanol
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestMethanol.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestMethanol.dir/TestMethanol.cpp.o -o ../TestMethanol -Wl,-rpath,"/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 83%] Built target TestMethanol
make -f tests/CMakeFiles/TestPositiveControl.dir/build.make tests/CMakeFiles/TestPositiveControl.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestPositiveControl.dir/DependInfo.cmake" --color=
Scanning dependencies of target TestPositiveControl
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f tests/CMakeFiles/TestPositiveControl.dir/build.make tests/CMakeFiles/TestPositiveControl.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 84%] Building CXX object tests/CMakeFiles/TestPositiveControl.dir/TestPositiveControl.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestPositiveControl.dir/TestPositiveControl.cpp.o -c "/<<PKGBUILDDIR>>/tests/TestPositiveControl.cpp"
[ 84%] Linking CXX executable ../TestPositiveControl
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestPositiveControl.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestPositiveControl.dir/TestPositiveControl.cpp.o -o ../TestPositiveControl -Wl,-rpath,"/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 84%] Built target TestPositiveControl
make -f tests/CMakeFiles/TestMgSolvationEnergy.dir/build.make tests/CMakeFiles/TestMgSolvationEnergy.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestMgSolvationEnergy.dir/DependInfo.cmake" --color=
Scanning dependencies of target TestMgSolvationEnergy
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make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 85%] Building CXX object tests/CMakeFiles/TestMgSolvationEnergy.dir/TestMgSolvationEnergy.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestMgSolvationEnergy.dir/TestMgSolvationEnergy.cpp.o -c "/<<PKGBUILDDIR>>/tests/TestMgSolvationEnergy.cpp"
[ 86%] Linking CXX executable ../TestOxygenMolecule
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestOxygenMolecule.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestOxygenMolecule.dir/TestOxygenMolecule.cpp.o -o ../TestOxygenMolecule -Wl,-rpath,"/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 86%] Built target TestOxygenMolecule
make -f tests/CMakeFiles/TestSanityDuMM.dir/build.make tests/CMakeFiles/TestSanityDuMM.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestSanityDuMM.dir/DependInfo.cmake" --color=
Scanning dependencies of target TestSanityDuMM
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[ 87%] Building CXX object tests/CMakeFiles/TestSanityDuMM.dir/TestSanityDuMM.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestSanityDuMM.dir/TestSanityDuMM.cpp.o -c "/<<PKGBUILDDIR>>/tests/TestSanityDuMM.cpp"
[ 87%] Linking CXX executable ../TestPartitioner
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestPartitioner.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestPartitioner.dir/TestPartitioner.cpp.o -o ../TestPartitioner -Wl,-rpath,"/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2
[ 87%] Linking CXX executable ../TestFitMagnesiums
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestFitMagnesiums.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestFitMagnesiums.dir/TestFitMagnesiums.cpp.o -o ../TestFitMagnesiums -Wl,-rpath,"/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 87%] Built target TestPartitioner
make -f tests/CMakeFiles/TestSerine.dir/build.make tests/CMakeFiles/TestSerine.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestSerine.dir/DependInfo.cmake" --color=
Scanning dependencies of target TestSerine
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make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 88%] Building CXX object tests/CMakeFiles/TestSerine.dir/TestSerine.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestSerine.dir/TestSerine.cpp.o -c "/<<PKGBUILDDIR>>/tests/TestSerine.cpp"
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 88%] Built target TestFitMagnesiums
make -f tests/adhoc/CMakeFiles/RemoveMassCenterDrift.dir/build.make tests/adhoc/CMakeFiles/RemoveMassCenterDrift.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/tests/adhoc" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/adhoc" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/adhoc/CMakeFiles/RemoveMassCenterDrift.dir/DependInfo.cmake" --color=
Scanning dependencies of target RemoveMassCenterDrift
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f tests/adhoc/CMakeFiles/RemoveMassCenterDrift.dir/build.make tests/adhoc/CMakeFiles/RemoveMassCenterDrift.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 89%] Building CXX object tests/adhoc/CMakeFiles/RemoveMassCenterDrift.dir/RemoveMassCenterDrift.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/adhoc" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/RemoveMassCenterDrift.dir/RemoveMassCenterDrift.cpp.o -c "/<<PKGBUILDDIR>>/tests/adhoc/RemoveMassCenterDrift.cpp"
[ 90%] Linking CXX executable ../TestMgSolvationEnergy
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestMgSolvationEnergy.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestMgSolvationEnergy.dir/TestMgSolvationEnergy.cpp.o -o ../TestMgSolvationEnergy -Wl,-rpath,"/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 90%] Built target TestMgSolvationEnergy
make -f tests/adhoc/CMakeFiles/TestSimpleProtein.dir/build.make tests/adhoc/CMakeFiles/TestSimpleProtein.dir/depend
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cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/tests/adhoc" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/adhoc" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/adhoc/CMakeFiles/TestSimpleProtein.dir/DependInfo.cmake" --color=
Scanning dependencies of target TestSimpleProtein
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make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 91%] Building CXX object tests/adhoc/CMakeFiles/TestSimpleProtein.dir/TestSimpleProtein.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/adhoc" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestSimpleProtein.dir/TestSimpleProtein.cpp.o -c "/<<PKGBUILDDIR>>/tests/adhoc/TestSimpleProtein.cpp"
[ 91%] Linking CXX executable ../TestSanityDuMM
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSanityDuMM.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestSanityDuMM.dir/TestSanityDuMM.cpp.o -o ../TestSanityDuMM -Wl,-rpath,"/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 91%] Built target TestSanityDuMM
make -f tests/adhoc/CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/build.make tests/adhoc/CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/tests/adhoc" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/adhoc" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/adhoc/CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/DependInfo.cmake" --color=
Scanning dependencies of target RemoveMassCenterDriftWithOptimizer
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f tests/adhoc/CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/build.make tests/adhoc/CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 91%] Building CXX object tests/adhoc/CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/RemoveMassCenterDriftWithOptimizer.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/adhoc" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/RemoveMassCenterDriftWithOptimizer.cpp.o -c "/<<PKGBUILDDIR>>/tests/adhoc/RemoveMassCenterDriftWithOptimizer.cpp"
[ 92%] Linking CXX executable ../TestSerine
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerine.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestSerine.dir/TestSerine.cpp.o -o ../TestSerine -Wl,-rpath,"/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 92%] Built target TestSerine
make -f tests/adhoc/CMakeFiles/TestSerineWithViz.dir/build.make tests/adhoc/CMakeFiles/TestSerineWithViz.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/tests/adhoc" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/adhoc" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/adhoc/CMakeFiles/TestSerineWithViz.dir/DependInfo.cmake" --color=
Scanning dependencies of target TestSerineWithViz
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f tests/adhoc/CMakeFiles/TestSerineWithViz.dir/build.make tests/adhoc/CMakeFiles/TestSerineWithViz.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 93%] Building CXX object tests/adhoc/CMakeFiles/TestSerineWithViz.dir/TestSerineWithViz.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/adhoc" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestSerineWithViz.dir/TestSerineWithViz.cpp.o -c "/<<PKGBUILDDIR>>/tests/adhoc/TestSerineWithViz.cpp"
[ 94%] Linking CXX executable ../../RemoveMassCenterDrift
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/adhoc" && /usr/bin/cmake -E cmake_link_script CMakeFiles/RemoveMassCenterDrift.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/RemoveMassCenterDrift.dir/RemoveMassCenterDrift.cpp.o -o ../../RemoveMassCenterDrift -Wl,-rpath,"/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" ../../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 94%] Built target RemoveMassCenterDrift
make -f tests/adhoc/CMakeFiles/TestWriteLargerPdb.dir/build.make tests/adhoc/CMakeFiles/TestWriteLargerPdb.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/tests/adhoc" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/adhoc" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/adhoc/CMakeFiles/TestWriteLargerPdb.dir/DependInfo.cmake" --color=
Scanning dependencies of target TestWriteLargerPdb
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f tests/adhoc/CMakeFiles/TestWriteLargerPdb.dir/build.make tests/adhoc/CMakeFiles/TestWriteLargerPdb.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 94%] Building CXX object tests/adhoc/CMakeFiles/TestWriteLargerPdb.dir/TestWriteLargerPdb.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/adhoc" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestWriteLargerPdb.dir/TestWriteLargerPdb.cpp.o -c "/<<PKGBUILDDIR>>/tests/adhoc/TestWriteLargerPdb.cpp"
[ 95%] Linking CXX executable ../../TestSimpleProtein
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/adhoc" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSimpleProtein.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestSimpleProtein.dir/TestSimpleProtein.cpp.o -o ../../TestSimpleProtein -Wl,-rpath,"/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" ../../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 95%] Built target TestSimpleProtein
make -f tests/adhoc/CMakeFiles/TestEthaneFromSimbody.dir/build.make tests/adhoc/CMakeFiles/TestEthaneFromSimbody.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/tests/adhoc" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/adhoc" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/adhoc/CMakeFiles/TestEthaneFromSimbody.dir/DependInfo.cmake" --color=
Scanning dependencies of target TestEthaneFromSimbody
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f tests/adhoc/CMakeFiles/TestEthaneFromSimbody.dir/build.make tests/adhoc/CMakeFiles/TestEthaneFromSimbody.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 96%] Building CXX object tests/adhoc/CMakeFiles/TestEthaneFromSimbody.dir/TestEthaneFromSimbody.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/adhoc" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestEthaneFromSimbody.dir/TestEthaneFromSimbody.cpp.o -c "/<<PKGBUILDDIR>>/tests/adhoc/TestEthaneFromSimbody.cpp"
[ 97%] Linking CXX executable ../../RemoveMassCenterDriftWithOptimizer
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/adhoc" && /usr/bin/cmake -E cmake_link_script CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/RemoveMassCenterDriftWithOptimizer.cpp.o -o ../../RemoveMassCenterDriftWithOptimizer -Wl,-rpath,"/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" ../../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 97%] Built target RemoveMassCenterDriftWithOptimizer
make -f tests/adhoc/CMakeFiles/TestSodiumWithViz.dir/build.make tests/adhoc/CMakeFiles/TestSodiumWithViz.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>/tests/adhoc" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/adhoc" "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/adhoc/CMakeFiles/TestSodiumWithViz.dir/DependInfo.cmake" --color=
Scanning dependencies of target TestSodiumWithViz
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f tests/adhoc/CMakeFiles/TestSodiumWithViz.dir/build.make tests/adhoc/CMakeFiles/TestSodiumWithViz.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 97%] Building CXX object tests/adhoc/CMakeFiles/TestSodiumWithViz.dir/TestSodiumWithViz.cpp.o
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/adhoc" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/<<PKGBUILDDIR>>/src" -I"/<<PKGBUILDDIR>>/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestSodiumWithViz.dir/TestSodiumWithViz.cpp.o -c "/<<PKGBUILDDIR>>/tests/adhoc/TestSodiumWithViz.cpp"
[ 97%] Linking CXX executable ../../TestSerineWithViz
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/adhoc" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerineWithViz.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestSerineWithViz.dir/TestSerineWithViz.cpp.o -o ../../TestSerineWithViz -Wl,-rpath,"/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" ../../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 97%] Built target TestSerineWithViz
[ 98%] Linking CXX executable ../../TestWriteLargerPdb
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/adhoc" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestWriteLargerPdb.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestWriteLargerPdb.dir/TestWriteLargerPdb.cpp.o -o ../../TestWriteLargerPdb -Wl,-rpath,"/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" ../../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 98%] Built target TestWriteLargerPdb
[ 99%] Linking CXX executable ../../TestSodiumWithViz
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/adhoc" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSodiumWithViz.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestSodiumWithViz.dir/TestSodiumWithViz.cpp.o -o ../../TestSodiumWithViz -Wl,-rpath,"/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" ../../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 99%] Built target TestSodiumWithViz
[100%] Linking CXX executable ../../TestEthaneFromSimbody
cd "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/tests/adhoc" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestEthaneFromSimbody.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestEthaneFromSimbody.dir/TestEthaneFromSimbody.cpp.o -o ../../TestEthaneFromSimbody -Wl,-rpath,"/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" ../../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[100%] Built target TestEthaneFromSimbody
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_start "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles" 0
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
create-stamp debian/debhelper-build-stamp
dh_testroot -a
dh_prep -a
dh_auto_install -a
cd obj-arm-linux-gnueabihf && make -j4 install DESTDIR=/<<BUILDDIR>>/molmodel-3.0\~svn842/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -S"/<<PKGBUILDDIR>>" -B"/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf" --check-build-system CMakeFiles/Makefile.cmake 0
make -f CMakeFiles/Makefile2 preinstall
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[2]: Nothing to be done for 'preinstall'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "None"
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/doc/api/Molmodel/html
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/doc/MolmodelAPI.html
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Molmodel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/SimTKmolmodel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/internal/AtomSubsystem.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/internal/Biotype.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/internal/Clonable.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/internal/Compound.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/internal/CompoundModeler.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/internal/CompoundSystem.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/internal/DNA.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/internal/DuMMForceFieldSubsystem.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/internal/Element.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/internal/GrinPointer.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/internal/Ions.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/internal/Ligands.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/internal/MassCenterMotionRemover.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/internal/MolecularMechanicsSystem.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/internal/NA.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/internal/NoseHooverThermostat.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/internal/PDBReader.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/internal/Pdb.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/internal/PeriodicPdbWriter.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/internal/PeriodicVmdReporter.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/internal/Protein.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/internal/RNA.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/internal/RiboseMobilizer.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/internal/Superpose.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/internal/VanDerWaalsForce.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/internal/VanderWallSphere.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/internal/VelocityRescalingThermostat.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/internal/VmdConnection.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/internal/VoxelHash.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/internal/Water.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/internal/bondGeometry.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/internal/common.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/molmodel/internal/units.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/doc/MolmodelUsersGuide.pdf
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/libSimTKmolmodel.so.3.0
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/libSimTKmolmodel.so
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/examples/molmodel/bin/ExampleAdenylateMobilitiesVMD
-- Set runtime path of "/<<PKGBUILDDIR>>/debian/tmp/usr/examples/molmodel/bin/ExampleAdenylateMobilitiesVMD" to ""
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/examples/molmodel/bin/ExampleAdenylateMobilitiesViz
-- Set runtime path of "/<<PKGBUILDDIR>>/debian/tmp/usr/examples/molmodel/bin/ExampleAdenylateMobilitiesViz" to ""
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/examples/molmodel/bin/ExampleCreatePropane
-- Set runtime path of "/<<PKGBUILDDIR>>/debian/tmp/usr/examples/molmodel/bin/ExampleCreatePropane" to ""
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/examples/molmodel/bin/ExampleFoldPolyalanine
-- Set runtime path of "/<<PKGBUILDDIR>>/debian/tmp/usr/examples/molmodel/bin/ExampleFoldPolyalanine" to ""
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/examples/molmodel/bin/ExampleLoadPdb
-- Set runtime path of "/<<PKGBUILDDIR>>/debian/tmp/usr/examples/molmodel/bin/ExampleLoadPdb" to ""
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/examples/molmodel/bin/ExampleLoadPdb2
-- Set runtime path of "/<<PKGBUILDDIR>>/debian/tmp/usr/examples/molmodel/bin/ExampleLoadPdb2" to ""
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/examples/molmodel/bin/ExampleRigidProtein
-- Set runtime path of "/<<PKGBUILDDIR>>/debian/tmp/usr/examples/molmodel/bin/ExampleRigidProtein" to ""
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/examples/molmodel/bin/ExampleSimpleProtein
-- Set runtime path of "/<<PKGBUILDDIR>>/debian/tmp/usr/examples/molmodel/bin/ExampleSimpleProtein" to ""
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/examples/molmodel/bin/ExampleSimpleRNA
-- Set runtime path of "/<<PKGBUILDDIR>>/debian/tmp/usr/examples/molmodel/bin/ExampleSimpleRNA" to ""
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/examples/molmodel/bin/ExampleTwoArgonAtoms
-- Set runtime path of "/<<PKGBUILDDIR>>/debian/tmp/usr/examples/molmodel/bin/ExampleTwoArgonAtoms" to ""
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/examples/molmodel/bin/ExampleTwoEthanes
-- Set runtime path of "/<<PKGBUILDDIR>>/debian/tmp/usr/examples/molmodel/bin/ExampleTwoEthanes" to ""
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/examples/molmodel/bin/MolmodelInstallTest
-- Set runtime path of "/<<PKGBUILDDIR>>/debian/tmp/usr/examples/molmodel/bin/MolmodelInstallTest" to ""
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/examples/molmodel/bin/MolmodelInstallTestNoViz
-- Set runtime path of "/<<PKGBUILDDIR>>/debian/tmp/usr/examples/molmodel/bin/MolmodelInstallTestNoViz" to ""
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/examples/molmodel/src/1AKG.pdb
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/examples/molmodel/bin/1AKG.pdb
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/examples/molmodel/src/1AKGtrim.pdb
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/examples/molmodel/bin/1AKGtrim.pdb
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/examples/molmodel/src/ThreeAdenylates.pdb
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/examples/molmodel/bin/ThreeAdenylates.pdb
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/examples/molmodel/src/adenylates.vmd
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/examples/molmodel/bin/adenylates.vmd
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/examples/molmodel/src/ExampleAdenylateMobilitiesVMD.cpp
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/examples/molmodel/src/ExampleAdenylateMobilitiesViz.cpp
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/examples/molmodel/src/ExampleCreatePropane.cpp
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/examples/molmodel/src/ExampleFoldPolyalanine.cpp
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/examples/molmodel/src/ExampleLoadPdb.cpp
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/examples/molmodel/src/ExampleLoadPdb2.cpp
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/examples/molmodel/src/ExampleRigidProtein.cpp
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/examples/molmodel/src/ExampleSimpleProtein.cpp
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/examples/molmodel/src/ExampleSimpleRNA.cpp
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/examples/molmodel/src/ExampleTwoArgonAtoms.cpp
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/examples/molmodel/src/ExampleTwoEthanes.cpp
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/examples/molmodel/src/MolmodelInstallTest.cpp
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/examples/molmodel/src/MolmodelInstallTestNoViz.cpp
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/examples/molmodel/src/ExampleAdenylateMobilitiesVMD_Notes.txt
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/examples/molmodel/src/README.txt
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/examples/molmodel/src/README_Makefile.txt
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/examples/molmodel/src/README_VisualStudio.txt
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/examples/molmodel/src/CMakeLists.txt
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/examples/molmodel/src/Makefile
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install
dh_install -plibsimtkmolmodel3.0 debian/tmp/usr/lib/libSimTKmolmodel.so.* usr/lib/arm-linux-gnueabihf
dh_install -plibsimtkmolmodel-dev debian/tmp/usr/lib/libSimTKmolmodel.so usr/lib/arm-linux-gnueabihf
rm -rf debian/tmp/usr/examples # not installing examples for now
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a
dh_installchangelogs -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_dwz -a -a
dh_strip -a -a
dh_makeshlibs -a -a
dh_shlibdeps -a -a
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libsimtkmolmodel3.0/usr/lib/arm-linux-gnueabihf/libSimTKmolmodel.so.3.0 found in none of the libraries
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'libsimtkmolmodel-dev' in '../libsimtkmolmodel-dev_3.0~svn842-2_armhf.deb'.
dpkg-deb: building package 'libsimtkmolmodel3.0' in '../libsimtkmolmodel3.0_3.0~svn842-2_armhf.deb'.
dpkg-deb: building package 'libsimtkmolmodel3.0-dbgsym' in '../libsimtkmolmodel3.0-dbgsym_3.0~svn842-2_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../molmodel_3.0~svn842-2_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2020-06-23T06:51:41Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
molmodel_3.0~svn842-2_armhf.changes:
------------------------------------
Format: 1.8
Date: Wed, 17 Jun 2020 07:21:24 -0400
Source: molmodel
Binary: libsimtkmolmodel-dev libsimtkmolmodel3.0 libsimtkmolmodel3.0-dbgsym
Architecture: armhf
Version: 3.0~svn842-2
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Andrius Merkys <merkys@debian.org>
Description:
libsimtkmolmodel-dev - C++ API for creating molecular models for SimTK (development file
libsimtkmolmodel3.0 - C++ API for creating molecular models for SimTK
Changes:
molmodel (3.0~svn842-2) unstable; urgency=medium
.
* Adding 'Rules-Requires-Root: no'.
* Bumping debhelper-compat.
* Not installing examples for now.
* Installing docs.
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Files:
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2b5e9ad37b569082ddd267153b02c0c5 9593792 debug optional libsimtkmolmodel3.0-dbgsym_3.0~svn842-2_armhf.deb
678b20a9a5e8036a26d0137fab84f634 461296 libs optional libsimtkmolmodel3.0_3.0~svn842-2_armhf.deb
5e5c7349e9439f291c1e3682beb9c8da 8401 libs optional molmodel_3.0~svn842-2_armhf.buildinfo
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
libsimtkmolmodel-dev_3.0~svn842-2_armhf.deb
-------------------------------------------
new Debian package, version 2.0.
size 1858500 bytes: control archive=2088 bytes.
1166 bytes, 25 lines control
3067 bytes, 39 lines md5sums
Package: libsimtkmolmodel-dev
Source: molmodel
Version: 3.0~svn842-2
Architecture: armhf
Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
Installed-Size: 2256
Depends: libsimtkmolmodel3.0 (= 3.0~svn842-2)
Section: libdevel
Priority: optional
Multi-Arch: same
Homepage: https://simtk.org/projects/molmodel
Description: C++ API for creating molecular models for SimTK (development files)
Provides C++ API for creating molecular models whose dynamics can be simulated
using the SimTK Simbody library. Molmodel is a programmer's toolkit for
building reduced-coordinate, yet still all-atom, models of large biopolymers
such as proteins, RNA, and DNA. One can control the allowed mobility. By
default, Molmodel builds torsion-coordinate models in which bond stretch and
bend angles are rigid while bond torsion angles are mobile. But one is able
to rigidify or free any subsets of the atoms, such as the rigid benzene ring.
.
Molmodel is a C++ API for biochemist-friendly molecular modeling that extends
the Simbody API to simplify construction of high-performance articulated models
of molecules.
.
This package contains development files.
drwxr-xr-x root/root 0 2020-06-17 11:21 ./
drwxr-xr-x root/root 0 2020-06-17 11:21 ./usr/
drwxr-xr-x root/root 0 2020-06-17 11:21 ./usr/include/
-rw-r--r-- root/root 3055 2011-02-22 03:48 ./usr/include/Molmodel.h
-rw-r--r-- root/root 4277 2011-10-27 19:13 ./usr/include/SimTKmolmodel.h
drwxr-xr-x root/root 0 2020-06-17 11:21 ./usr/include/molmodel/
drwxr-xr-x root/root 0 2020-06-17 11:21 ./usr/include/molmodel/internal/
-rw-r--r-- root/root 7528 2010-04-07 15:39 ./usr/include/molmodel/internal/AtomSubsystem.h
-rw-r--r-- root/root 7496 2008-07-09 15:56 ./usr/include/molmodel/internal/Biotype.h
-rw-r--r-- root/root 3009 2008-06-22 15:35 ./usr/include/molmodel/internal/Clonable.h
-rw-r--r-- root/root 83526 2016-10-11 10:11 ./usr/include/molmodel/internal/Compound.h
-rw-r--r-- root/root 7005 2009-02-27 23:56 ./usr/include/molmodel/internal/CompoundModeler.h
-rw-r--r-- root/root 6082 2012-10-02 16:44 ./usr/include/molmodel/internal/CompoundSystem.h
-rw-r--r-- root/root 22235 2015-01-21 00:05 ./usr/include/molmodel/internal/DNA.h
-rw-r--r-- root/root 70215 2015-01-21 20:56 ./usr/include/molmodel/internal/DuMMForceFieldSubsystem.h
-rw-r--r-- root/root 19772 2008-07-09 15:56 ./usr/include/molmodel/internal/Element.h
-rw-r--r-- root/root 5642 2008-04-04 21:30 ./usr/include/molmodel/internal/GrinPointer.h
-rw-r--r-- root/root 15083 2009-03-20 17:38 ./usr/include/molmodel/internal/Ions.h
-rw-r--r-- root/root 16871 2009-03-20 17:38 ./usr/include/molmodel/internal/Ligands.h
-rw-r--r-- root/root 11934 2012-03-05 03:30 ./usr/include/molmodel/internal/MassCenterMotionRemover.h
-rw-r--r-- root/root 9510 2015-06-04 08:25 ./usr/include/molmodel/internal/MolecularMechanicsSystem.h
-rw-r--r-- root/root 14305 2011-11-14 21:20 ./usr/include/molmodel/internal/NA.h
-rw-r--r-- root/root 3377 2009-12-15 07:21 ./usr/include/molmodel/internal/NoseHooverThermostat.h
-rw-r--r-- root/root 4497 2015-08-19 21:57 ./usr/include/molmodel/internal/PDBReader.h
-rw-r--r-- root/root 16555 2020-06-02 11:20 ./usr/include/molmodel/internal/Pdb.h
-rw-r--r-- root/root 4301 2009-08-05 17:46 ./usr/include/molmodel/internal/PeriodicPdbWriter.h
-rw-r--r-- root/root 3549 2009-04-17 18:07 ./usr/include/molmodel/internal/PeriodicVmdReporter.h
-rw-r--r-- root/root 50167 2015-06-04 08:25 ./usr/include/molmodel/internal/Protein.h
-rw-r--r-- root/root 37416 2015-01-21 00:05 ./usr/include/molmodel/internal/RNA.h
-rw-r--r-- root/root 5122 2010-02-05 05:47 ./usr/include/molmodel/internal/RiboseMobilizer.h
-rw-r--r-- root/root 8762 2008-07-25 17:52 ./usr/include/molmodel/internal/Superpose.h
-rw-r--r-- root/root 13560 2009-03-18 17:26 ./usr/include/molmodel/internal/VanDerWaalsForce.h
-rw-r--r-- root/root 477 2008-06-21 00:10 ./usr/include/molmodel/internal/VanderWallSphere.h
-rw-r--r-- root/root 11619 2012-03-05 03:30 ./usr/include/molmodel/internal/VelocityRescalingThermostat.h
-rw-r--r-- root/root 935 2010-04-07 15:39 ./usr/include/molmodel/internal/VmdConnection.h
-rw-r--r-- root/root 4845 2015-08-27 20:09 ./usr/include/molmodel/internal/VoxelHash.h
-rw-r--r-- root/root 2851 2009-03-20 17:38 ./usr/include/molmodel/internal/Water.h
-rw-r--r-- root/root 3664 2008-06-22 15:35 ./usr/include/molmodel/internal/bondGeometry.h
-rw-r--r-- root/root 5124 2009-06-02 20:57 ./usr/include/molmodel/internal/common.h
-rw-r--r-- root/root 3429 2008-06-22 15:35 ./usr/include/molmodel/internal/units.h
drwxr-xr-x root/root 0 2020-06-17 11:21 ./usr/lib/
drwxr-xr-x root/root 0 2020-06-17 11:21 ./usr/lib/arm-linux-gnueabihf/
lrwxrwxrwx root/root 0 2020-06-17 11:21 ./usr/lib/arm-linux-gnueabihf/libSimTKmolmodel.so -> libSimTKmolmodel.so.3.0
drwxr-xr-x root/root 0 2020-06-17 11:21 ./usr/share/
drwxr-xr-x root/root 0 2020-06-17 11:21 ./usr/share/doc/
drwxr-xr-x root/root 0 2020-06-17 11:21 ./usr/share/doc/libsimtkmolmodel-dev/
-rw-r--r-- root/root 267 2020-06-17 11:21 ./usr/share/doc/libsimtkmolmodel-dev/changelog.Debian.gz
-rw-r--r-- root/root 1447 2020-06-17 11:21 ./usr/share/doc/libsimtkmolmodel-dev/copyright
drwxr-xr-x root/root 0 2020-06-17 11:21 ./usr/share/doc/libsimtkmolmodel-dev/doc/
-rw-r--r-- root/root 241 2011-05-31 18:10 ./usr/share/doc/libsimtkmolmodel-dev/doc/MolmodelAPI.html
-rw-r--r-- root/root 1787506 2011-07-28 19:07 ./usr/share/doc/libsimtkmolmodel-dev/doc/MolmodelUsersGuide.pdf.gz
libsimtkmolmodel3.0-dbgsym_3.0~svn842-2_armhf.deb
-------------------------------------------------
new Debian package, version 2.0.
size 9593792 bytes: control archive=560 bytes.
417 bytes, 13 lines control
106 bytes, 1 lines md5sums
Package: libsimtkmolmodel3.0-dbgsym
Source: molmodel
Version: 3.0~svn842-2
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
Installed-Size: 9817
Depends: libsimtkmolmodel3.0 (= 3.0~svn842-2)
Section: debug
Priority: optional
Multi-Arch: same
Description: debug symbols for libsimtkmolmodel3.0
Build-Ids: 0eb748dcd8b6a3b63679505debbf9ef374b7fa67
drwxr-xr-x root/root 0 2020-06-17 11:21 ./
drwxr-xr-x root/root 0 2020-06-17 11:21 ./usr/
drwxr-xr-x root/root 0 2020-06-17 11:21 ./usr/lib/
drwxr-xr-x root/root 0 2020-06-17 11:21 ./usr/lib/debug/
drwxr-xr-x root/root 0 2020-06-17 11:21 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2020-06-17 11:21 ./usr/lib/debug/.build-id/0e/
-rw-r--r-- root/root 10042212 2020-06-17 11:21 ./usr/lib/debug/.build-id/0e/b748dcd8b6a3b63679505debbf9ef374b7fa67.debug
drwxr-xr-x root/root 0 2020-06-17 11:21 ./usr/share/
drwxr-xr-x root/root 0 2020-06-17 11:21 ./usr/share/doc/
lrwxrwxrwx root/root 0 2020-06-17 11:21 ./usr/share/doc/libsimtkmolmodel3.0-dbgsym -> libsimtkmolmodel3.0
libsimtkmolmodel3.0_3.0~svn842-2_armhf.deb
------------------------------------------
new Debian package, version 2.0.
size 461296 bytes: control archive=1152 bytes.
1143 bytes, 23 lines control
252 bytes, 3 lines md5sums
57 bytes, 1 lines shlibs
65 bytes, 2 lines triggers
Package: libsimtkmolmodel3.0
Source: molmodel
Version: 3.0~svn842-2
Architecture: armhf
Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
Installed-Size: 1622
Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.5), libmmdb2-0, libsimbody3.6, libstdc++6 (>= 5.2)
Section: libs
Priority: optional
Multi-Arch: same
Homepage: https://simtk.org/projects/molmodel
Description: C++ API for creating molecular models for SimTK
Provides C++ API for creating molecular models whose dynamics can be simulated
using the SimTK Simbody library. Molmodel is a programmer's toolkit for
building reduced-coordinate, yet still all-atom, models of large biopolymers
such as proteins, RNA, and DNA. One can control the allowed mobility. By
default, Molmodel builds torsion-coordinate models in which bond stretch and
bend angles are rigid while bond torsion angles are mobile. But one is able
to rigidify or free any subsets of the atoms, such as the rigid benzene ring.
.
Molmodel is a C++ API for biochemist-friendly molecular modeling that extends
the Simbody API to simplify construction of high-performance articulated models
of molecules.
drwxr-xr-x root/root 0 2020-06-17 11:21 ./
drwxr-xr-x root/root 0 2020-06-17 11:21 ./usr/
drwxr-xr-x root/root 0 2020-06-17 11:21 ./usr/lib/
drwxr-xr-x root/root 0 2020-06-17 11:21 ./usr/lib/arm-linux-gnueabihf/
-rw-r--r-- root/root 1646992 2020-06-17 11:21 ./usr/lib/arm-linux-gnueabihf/libSimTKmolmodel.so.3.0
drwxr-xr-x root/root 0 2020-06-17 11:21 ./usr/share/
drwxr-xr-x root/root 0 2020-06-17 11:21 ./usr/share/doc/
drwxr-xr-x root/root 0 2020-06-17 11:21 ./usr/share/doc/libsimtkmolmodel3.0/
-rw-r--r-- root/root 267 2020-06-17 11:21 ./usr/share/doc/libsimtkmolmodel3.0/changelog.Debian.gz
-rw-r--r-- root/root 1447 2020-06-17 11:21 ./usr/share/doc/libsimtkmolmodel3.0/copyright
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 553936
Build-Time: 520
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 942
Job: molmodel_3.0~svn842-2
Machine Architecture: armhf
Package: molmodel
Package-Time: 1486
Source-Version: 3.0~svn842-2
Space: 553936
Status: successful
Version: 3.0~svn842-2
--------------------------------------------------------------------------------
Finished at 2020-06-23T06:51:41Z
Build needed 00:24:46, 553936k disk space