minimap →
0.2-6 →
armhf → 2021-10-13 05:40:52
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-01
+==============================================================================+
| minimap 0.2-6 (armhf) Wed, 13 Oct 2021 05:34:43 +0000 |
+==============================================================================+
Package: minimap
Version: 0.2-6
Source Version: 0.2-6
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/bookworm-staging-armhf-sbuild-0c71cb15-125e-4bd8-bb3f-cda6f6cede12' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bookworm-staging/main Sources [12.4 MB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf Packages [13.4 MB]
Fetched 25.8 MB in 26s (987 kB/s)
Reading package lists...
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'minimap' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/minimap.git
Please use:
git clone https://salsa.debian.org/med-team/minimap.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 112 kB of source archives.
Get:1 http://172.17.0.1/private bookworm-staging/main minimap 0.2-6 (dsc) [2107 B]
Get:2 http://172.17.0.1/private bookworm-staging/main minimap 0.2-6 (tar) [31.2 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main minimap 0.2-6 (diff) [78.7 kB]
Fetched 112 kB in 0s (778 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/minimap-j2hiRp/minimap-0.2' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/minimap-j2hiRp' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-uQRd5H/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-uQRd5H/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-uQRd5H/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-uQRd5H/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-uQRd5H/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-uQRd5H/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-uQRd5H/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-uQRd5H/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-uQRd5H/apt_archive ./ Packages [433 B]
Fetched 2109 B in 1s (2705 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-uQRd5H/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-uQRd5H/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 35506D9A48F77B2E
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 29 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-uQRd5H/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (22.7 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12484 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), d-shlibs, zlib1g-dev
Filtered Build-Depends: debhelper-compat (= 13), d-shlibs, zlib1g-dev
dpkg-deb: building package 'sbuild-build-depends-minimap-dummy' in '/<<BUILDDIR>>/resolver-uQRd5H/apt_archive/sbuild-build-depends-minimap-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-minimap-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-uQRd5H/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-uQRd5H/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-uQRd5H/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-uQRd5H/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-uQRd5H/apt_archive ./ Sources [507 B]
Get:5 copy:/<<BUILDDIR>>/resolver-uQRd5H/apt_archive ./ Packages [586 B]
Fetched 2426 B in 1s (3254 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-uQRd5H/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-uQRd5H/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 35506D9A48F77B2E
Reading package lists...
Install minimap build dependencies (apt-based resolver)
-------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils d-shlibs debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1
libfile-stripnondeterminism-perl libicu67 libmagic-mgc libmagic1
libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2
m4 man-db po-debconf sensible-utils zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc
libasprintf-dev libgettextpo-dev groff libtool-doc gfortran
| fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
libmail-box-perl
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils d-shlibs debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1
libfile-stripnondeterminism-perl libicu67 libmagic-mgc libmagic1
libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2
m4 man-db po-debconf sbuild-build-depends-minimap-dummy sensible-utils
zlib1g-dev
0 upgraded, 34 newly installed, 0 to remove and 29 not upgraded.
Need to get 17.7 MB of archives.
After this operation, 65.3 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-uQRd5H/apt_archive ./ sbuild-build-depends-minimap-dummy 0.invalid.0 [872 B]
Get:2 http://172.17.0.1/private bookworm-staging/main armhf bsdextrautils armhf 2.37.2-3 [135 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:4 http://172.17.0.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-7 [793 kB]
Get:5 http://172.17.0.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:6 http://172.17.0.1/private bookworm-staging/main armhf man-db armhf 2.9.4-2 [1307 kB]
Get:7 http://172.17.0.1/private bookworm-staging/main armhf sensible-utils all 0.0.17 [21.5 kB]
Get:8 http://172.17.0.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB]
Get:9 http://172.17.0.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.39-3 [117 kB]
Get:10 http://172.17.0.1/private bookworm-staging/main armhf file armhf 1:5.39-3 [68.0 kB]
Get:11 http://172.17.0.1/private bookworm-staging/main armhf gettext-base armhf 0.21-4 [171 kB]
Get:12 http://172.17.0.1/private bookworm-staging/main armhf libsigsegv2 armhf 2.13-1 [34.3 kB]
Get:13 http://172.17.0.1/private bookworm-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:14 http://172.17.0.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:15 http://172.17.0.1/private bookworm-staging/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get:16 http://172.17.0.1/private bookworm-staging/main armhf automake all 1:1.16.4-2 [819 kB]
Get:17 http://172.17.0.1/private bookworm-staging/main armhf autopoint all 0.21-4 [510 kB]
Get:18 http://172.17.0.1/private bookworm-staging/main armhf d-shlibs all 0.100 [18.1 kB]
Get:19 http://172.17.0.1/private bookworm-staging/main armhf libdebhelper-perl all 13.5.2 [192 kB]
Get:20 http://172.17.0.1/private bookworm-staging/main armhf libtool all 2.4.6-15 [513 kB]
Get:21 http://172.17.0.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:22 http://172.17.0.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:23 http://172.17.0.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:24 http://172.17.0.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB]
Get:25 http://172.17.0.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.12.0-1 [15.4 kB]
Get:26 http://172.17.0.1/private bookworm-staging/main armhf libelf1 armhf 0.185-2 [168 kB]
Get:27 http://172.17.0.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:28 http://172.17.0.1/private bookworm-staging/main armhf libicu67 armhf 67.1-7 [8291 kB]
Get:29 http://172.17.0.1/private bookworm-staging/main armhf libxml2 armhf 2.9.12+dfsg-5 [584 kB]
Get:30 http://172.17.0.1/private bookworm-staging/main armhf gettext armhf 0.21-4 [1215 kB]
Get:31 http://172.17.0.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:32 http://172.17.0.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:33 http://172.17.0.1/private bookworm-staging/main armhf debhelper all 13.5.2 [1056 kB]
Get:34 http://172.17.0.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Selecting previously unselected package bsdextrautils.
(Reading database ... 12484 files and directories currently installed.)
Preparing to unpack .../00-bsdextrautils_2.37.2-3_armhf.deb ...
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Unpacking groff-base (1.22.4-7) ...
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Setting up libpipeline1:armhf (1.5.3-1) ...
Setting up bsdextrautils (2.37.2-3) ...
update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode
Setting up libicu67:armhf (67.1-7) ...
Setting up libmagic-mgc (1:5.39-3) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libdebhelper-perl (13.5.2) ...
Setting up libmagic1:armhf (1:5.39-3) ...
Setting up gettext-base (0.21-4) ...
Setting up file (1:5.39-3) ...
Setting up autotools-dev (20180224.1+nmu1) ...
Setting up libsigsegv2:armhf (2.13-1) ...
Setting up autopoint (0.21-4) ...
Setting up d-shlibs (0.100) ...
Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-2) ...
Setting up sensible-utils (0.0.17) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libelf1:armhf (0.185-2) ...
Setting up libxml2:armhf (2.9.12+dfsg-5) ...
Setting up libfile-stripnondeterminism-perl (1.12.0-1) ...
Setting up gettext (0.21-4) ...
Setting up libtool (2.4.6-15) ...
Setting up m4 (1.4.18-5) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up autoconf (2.71-2) ...
Setting up dh-strip-nondeterminism (1.12.0-1) ...
Setting up dwz (0.14-1) ...
Setting up groff-base (1.22.4-7) ...
Setting up automake (1:1.16.4-2) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up po-debconf (1.0.21+nmu1) ...
Setting up man-db (2.9.4-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up dh-autoreconf (20) ...
Setting up debhelper (13.5.2) ...
Setting up sbuild-build-depends-minimap-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.32-4+rpi1) ...
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.1-armmp armhf (armv7l)
Toolchain package versions: binutils_2.37-5+rpi1 dpkg-dev_1.20.9+rpi1 g++-10_10.3.0-9+rpi1 gcc-10_10.3.0-9+rpi1 libc6-dev_2.32-4+rpi1 libstdc++-10-dev_10.3.0-9+rpi1 libstdc++6_11.2.0-4+rpi1 linux-libc-dev_5.10.46-4+rpi1
Package versions: adduser_3.118 apt_2.3.9 autoconf_2.71-2 automake_1:1.16.4-2 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_12+rpi1 base-passwd_3.5.51 bash_5.1-3 binutils_2.37-5+rpi1 binutils-arm-linux-gnueabihf_2.37-5+rpi1 binutils-common_2.37-5+rpi1 bsdextrautils_2.37.2-3 bsdutils_1:2.37.2-1 build-essential_12.9 bzip2_1.0.8-4 coreutils_8.32-4 cpp_4:10.2.1-1+rpi1 cpp-10_10.3.0-9+rpi1 d-shlibs_0.100 dash_0.5.11+git20210120+802ebd4-1 debconf_1.5.77 debhelper_13.5.2 debianutils_4.11.2 dh-autoreconf_20 dh-strip-nondeterminism_1.12.0-1 diffutils_1:3.7-5 dirmngr_2.2.27-2 dpkg_1.20.9+rpi1 dpkg-dev_1.20.9+rpi1 dwz_0.14-1 e2fsprogs_1.46.4-1 fakeroot_1.25.3-1.1 file_1:5.39-3 findutils_4.8.0-1 g++_4:10.2.1-1+rpi1 g++-10_10.3.0-9+rpi1 gcc_4:10.2.1-1+rpi1 gcc-10_10.3.0-9+rpi1 gcc-10-base_10.3.0-9+rpi1 gcc-11-base_11.2.0-4+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-4 gettext-base_0.21-4 gnupg_2.2.27-2 gnupg-l10n_2.2.27-2 gnupg-utils_2.2.27-2 gpg_2.2.27-2 gpg-agent_2.2.27-2 gpg-wks-client_2.2.27-2 gpg-wks-server_2.2.27-2 gpgconf_2.2.27-2 gpgsm_2.2.27-2 gpgv_2.2.27-2 grep_3.7-1 groff-base_1.22.4-7 gzip_1.10-4 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libapt-pkg6.0_2.3.9 libarchive-zip-perl_1.68-1 libasan6_11.2.0-4+rpi1 libassuan0_2.5.5-1 libatomic1_11.2.0-4+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.5-1 libaudit1_1:3.0.5-1 libbinutils_2.37-5+rpi1 libblkid1_2.37.2-1 libbz2-1.0_1.0.8-4 libc-bin_2.32-4+rpi1 libc-dev-bin_2.32-4+rpi1 libc6_2.32-4+rpi1 libc6-dev_2.32-4+rpi1 libcap-ng0_0.7.9-2.2+b1 libcc1-0_11.2.0-4+rpi1 libcom-err2_1.46.4-1 libcrypt-dev_1:4.4.25-2 libcrypt1_1:4.4.25-2 libctf-nobfd0_2.37-5+rpi1 libctf0_2.37-5+rpi1 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.260 libdebhelper-perl_13.5.2 libdpkg-perl_1.20.9+rpi1 libelf1_0.185-2 libext2fs2_1.46.4-1 libfakeroot_1.25.3-1.1 libffi7_3.3-6 libfile-stripnondeterminism-perl_1.12.0-1 libgcc-10-dev_10.3.0-9+rpi1 libgcc-s1_11.2.0-4+rpi1 libgcrypt20_1.9.4-3 libgdbm-compat4_1.21-1 libgdbm6_1.21-1 libgmp10_2:6.2.1+dfsg-2 libgnutls30_3.7.2-2 libgomp1_11.2.0-4+rpi1 libgpg-error0_1.42-3 libgssapi-krb5-2_1.18.3-7 libhogweed6_3.7.3-1 libicu67_67.1-7 libidn2-0_2.3.2-2 libisl23_0.23-1 libk5crypto3_1.18.3-7 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-7 libkrb5support0_1.18.3-7 libksba8_1.6.0-2 libldap-2.4-2_2.4.59+dfsg-1 liblocale-gettext-perl_1.07-4+b1 liblz4-1_1.9.3-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmount1_2.37.2-1 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libncursesw6_6.2+20201114-4 libnettle8_3.7.3-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.0-2 libpam-modules_1.4.0-10 libpam-modules-bin_1.4.0-10 libpam-runtime_1.4.0-10 libpam0g_1.4.0-10 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libperl5.32_5.32.1-5 libpipeline1_1.5.3-1 libreadline8_8.1-2 libsasl2-2_2.1.27+dfsg-2.1 libsasl2-modules-db_2.1.27+dfsg-2.1 libseccomp2_2.5.1-1+rpi1 libselinux1_3.1-3 libsemanage-common_3.1-1 libsemanage1_3.1-1+b1 libsepol1_3.1-1 libsigsegv2_2.13-1 libsmartcols1_2.37.2-1 libsqlite3-0_3.36.0-2 libss2_1.46.4-1 libssl1.1_1.1.1l-1 libstdc++-10-dev_10.3.0-9+rpi1 libstdc++6_11.2.0-4+rpi1 libsub-override-perl_0.09-2 libsystemd0_247.9-1+rpi1 libtasn1-6_4.17.0-2 libtext-charwidth-perl_0.04-10+b1 libtext-iconv-perl_1.7-7+b1 libtinfo6_6.2+20201114-4 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15 libubsan1_11.2.0-4+rpi1 libuchardet0_0.0.7-1 libudev1_247.9-1+rpi1 libunistring2_0.9.10-6 libuuid1_2.37.2-1 libxml2_2.9.12+dfsg-5 libxxhash0_0.8.0-2+rpi1 libzstd1_1.4.8+dfsg-2.1+rpi1 linux-libc-dev_5.10.46-4+rpi1 login_1:4.8.1-1 logsave_1.46.4-1 lsb-base_11.1.0+rpi1 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 mount_2.37.2-1 ncurses-base_6.2+20201114-4 ncurses-bin_6.2+20201114-4 netbase_6.3 passwd_1:4.8.1-1 patch_2.7.6-7 perl_5.32.1-5 perl-base_5.32.1-5 perl-modules-5.32_5.32.1-5 pinentry-curses_1.1.0-4 po-debconf_1.0.21+nmu1 raspbian-archive-keyring_20120528.2 readline-common_8.1-2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-minimap-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.00-1 tar_1.34+dfsg-1 tzdata_2021a-1 util-linux_2.37.2-1 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.ciD0Up3n/trustedkeys.kbx': General error
gpgv: Signature made Mon Oct 11 08:31:51 2021 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./minimap_0.2-6.dsc
dpkg-source: info: extracting minimap in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking minimap_0.2.orig.tar.gz
dpkg-source: info: unpacking minimap_0.2-6.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying make_shared_lib
dpkg-source: info: applying hardening
dpkg-source: info: applying ensure_64bit_value
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-0c71cb15-125e-4bd8-bb3f-cda6f6cede12
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package minimap
dpkg-buildpackage: info: source version 0.2-6
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean
dh_auto_clean
make -j4 clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
rm -fr gmon.out *.o a.out minimap sdust minimap-lite *~ *.a *.dSYM session*
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_clean
debian/rules binary-arch
dh binary-arch
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
dh_auto_build -a
make -j4 "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<PKGBUILDDIR>>'
gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat -Wno-unused-function -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -I. main.c -o main.o
gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat -Wno-unused-function -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -I. kthread.c -o kthread.o
gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat -Wno-unused-function -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -I. misc.c -o misc.o
gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat -Wno-unused-function -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -I. bseq.c -o bseq.o
gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat -Wno-unused-function -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -I. sketch.c -o sketch.o
gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat -Wno-unused-function -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -I. sdust.c -o sdust.o
gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat -Wno-unused-function -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -I. index.c -o index.o
gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat -Wno-unused-function -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -I. map.c -o map.o
index.c: In function 'mm_idx_load':
index.c:317:2: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
317 | fread(&mi->freq_thres, sizeof(float), 1, fp);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
index.c:319:2: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
319 | fread(mi->len, 4, mi->n, fp);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
index.c:324:4: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
324 | fread(&l, 1, 1, fp);
| ^~~~~~~~~~~~~~~~~~~
index.c:326:4: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
326 | fread(mi->name[i], 1, l, fp);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
index.c:335:3: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
335 | fread(&b->n, 4, 1, fp);
| ^~~~~~~~~~~~~~~~~~~~~~
index.c:337:3: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
337 | fread(b->p, 8, b->n, fp);
| ^~~~~~~~~~~~~~~~~~~~~~~~
index.c:338:3: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
338 | fread(&size, 4, 1, fp);
| ^~~~~~~~~~~~~~~~~~~~~~
index.c:345:4: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
345 | fread(x, 8, 2, fp);
| ^~~~~~~~~~~~~~~~~~
ar -csru libminimap.a kthread.o misc.o bseq.o sketch.o sdust.o index.o map.o
gcc -shared -o libminimap.so.0 kthread.o misc.o bseq.o sketch.o sdust.o index.o map.o -fPIC -Wl,-soname,libminimap.so.0 -lm -lz -lpthread -Wl,-z,relro -Wl,-z,now
ar: `u' modifier ignored since `D' is the default (see `U')
gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat -Wno-unused-function -fPIC -Wl,-z,relro -Wl,-z,now main.o -o minimap -L. -lminimap -lm -lz -lpthread
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test -a
create-stamp debian/debhelper-build-stamp
dh_prep -a
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
ln -s libminimap.so.* libminimap.so
d-shlibmove --commit \
--multiarch \
--devunversioned \
--movedev "*.h" /usr/include/minimap \
libminimap.so
Library package automatic movement utility
--> zlib1g-dev package exists.
set -e
install -d -m 755 debian/libminimap-dev/usr/lib/arm-linux-gnueabihf
install -d -m 755 debian/libminimap0/usr/lib/arm-linux-gnueabihf
mv ./libminimap.a debian/libminimap-dev/usr/lib/arm-linux-gnueabihf
mv ./libminimap.la debian/libminimap-dev/usr/lib/arm-linux-gnueabihf || true
mv ./libminimap.so debian/libminimap-dev/usr/lib/arm-linux-gnueabihf
mv /<<PKGBUILDDIR>>/libminimap.so.0 debian/libminimap0/usr/lib/arm-linux-gnueabihf
PKGDEV=libminimap-dev
PKGSHL=libminimap0
install -d -m 755 debian/libminimap-dev//usr/include/minimap
mv *.h debian/libminimap-dev//usr/include/minimap
mv: cannot stat './libminimap.la': No such file or directory
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_install -a
dh_installdocs -a
dh_installchangelogs -a
dh_installman -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dh_installdeb -a
dh_gencontrol -a
dpkg-gencontrol: warning: Depends field of package libminimap-dev: substitution variable ${shlibs:Depends} used, but is not defined
dpkg-gencontrol: warning: package libminimap-dev: substitution variable ${devlibs:Depends} unused, but is defined
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'minimap' in '../minimap_0.2-6_armhf.deb'.
dpkg-deb: building package 'libminimap0' in '../libminimap0_0.2-6_armhf.deb'.
dpkg-deb: building package 'libminimap-dev' in '../libminimap-dev_0.2-6_armhf.deb'.
dpkg-deb: building package 'libminimap0-dbgsym' in '../libminimap0-dbgsym_0.2-6_armhf.deb'.
dpkg-deb: building package 'minimap-dbgsym' in '../minimap-dbgsym_0.2-6_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../minimap_0.2-6_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2021-10-13T05:40:44Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
minimap_0.2-6_armhf.changes:
----------------------------
Format: 1.8
Date: Mon, 11 Oct 2021 10:26:06 +0200
Source: minimap
Binary: libminimap-dev libminimap0 libminimap0-dbgsym minimap minimap-dbgsym
Architecture: armhf
Version: 0.2-6
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
libminimap-dev - development headers for libminimap
libminimap0 - library for approximate mapping of long biosequences
minimap - tool for approximate mapping of long biosequences such as DNA rea
Changes:
minimap (0.2-6) unstable; urgency=medium
.
* Team upload
.
[ Debian Janitor ]
* Apply multi-arch hints.
+ libminimap-dev, libminimap0: Add Multi-Arch: same.
.
[ Andreas Tille ]
* Standards-Version: 4.6.0 (routine-update)
* debhelper-compat 13 (routine-update)
* Add salsa-ci file (routine-update)
* Rules-Requires-Root: no (routine-update)
* Update watch file format version to 4.
* Set upstream metadata fields: Bug-Submit, Repository, Repository-Browse.
Checksums-Sha1:
ab695c3d24d10697f872ee678dbe3909e7279de4 30416 libminimap-dev_0.2-6_armhf.deb
2a906d5bcdc3f826629830d4b65421ac35d802cd 44452 libminimap0-dbgsym_0.2-6_armhf.deb
227262814683eb3769885da2ec8ade2ac2bc4bcb 19284 libminimap0_0.2-6_armhf.deb
c3b8c92d37866c99fb72f78de4d83667f85dd088 49656 minimap-dbgsym_0.2-6_armhf.deb
3141ce8a9a820343af5134dd6dd30ec09d4d5bd1 6685 minimap_0.2-6_armhf.buildinfo
71a4f87c272540be567b9d71ce7e88b940cea013 23516 minimap_0.2-6_armhf.deb
Checksums-Sha256:
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b4d227a5fef37c0a44f5de78504483c1df121888aea88c69367a10ddee646451 44452 libminimap0-dbgsym_0.2-6_armhf.deb
1c4a79e04c9830df559585f2274e59af0c38156e702417ebf56198789f3d8154 19284 libminimap0_0.2-6_armhf.deb
088afce9455b9809866571da4a3fe261abc2d5e4b3fa37388b5dd42bc48012ef 49656 minimap-dbgsym_0.2-6_armhf.deb
0b569ed22efdc14ed689c72c7d150b9ffdce13a7d07542103253ea4fb88aae1d 6685 minimap_0.2-6_armhf.buildinfo
957f35e05cb539c6fad9b47987c5548eb0da45daa5ee8d21239bc1f01a451a61 23516 minimap_0.2-6_armhf.deb
Files:
4d83070fd8c6e2d12f3c6dd29d82b8ff 30416 libdevel optional libminimap-dev_0.2-6_armhf.deb
5a9163db5f0c2d165dfcb3915faa925a 44452 debug optional libminimap0-dbgsym_0.2-6_armhf.deb
d3b63d9f9a403bc2205ea8a263dfc24c 19284 libs optional libminimap0_0.2-6_armhf.deb
808ea771e995cbe4c70fb4705b5daaab 49656 debug optional minimap-dbgsym_0.2-6_armhf.deb
596a38044aaaf03af378b8c5230280a8 6685 science optional minimap_0.2-6_armhf.buildinfo
c9b63b11f459d9cf18937b1e2b815bc0 23516 science optional minimap_0.2-6_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
libminimap-dev_0.2-6_armhf.deb
------------------------------
new Debian package, version 2.0.
size 30416 bytes: control archive=1028 bytes.
704 bytes, 18 lines control
724 bytes, 11 lines md5sums
Package: libminimap-dev
Source: minimap
Version: 0.2-6
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 105
Depends: libminimap0 (= 0.2-6), zlib1g-dev
Section: libdevel
Priority: optional
Multi-Arch: same
Homepage: https://github.com/lh3/minimap
Description: development headers for libminimap
Minimap is an experimental tool to efficiently find multiple approximate
mapping positions between two sets of long sequences, such as between
DNA reads and reference genomes, between genomes and between long noisy reads.
.
This package contains the C library headers for using minimap in custom tools,
along with a static library.
drwxr-xr-x root/root 0 2021-10-11 08:26 ./
drwxr-xr-x root/root 0 2021-10-11 08:26 ./usr/
drwxr-xr-x root/root 0 2021-10-11 08:26 ./usr/include/
drwxr-xr-x root/root 0 2021-10-11 08:26 ./usr/include/minimap/
-rw-r--r-- root/root 359 2015-12-07 02:29 ./usr/include/minimap/bseq.h
-rw-r--r-- root/root 4294 2021-10-11 08:26 ./usr/include/minimap/kdq.h
-rw-r--r-- root/root 21313 2015-12-07 02:29 ./usr/include/minimap/khash.h
-rw-r--r-- root/root 8741 2015-12-07 02:29 ./usr/include/minimap/kseq.h
-rw-r--r-- root/root 5390 2015-12-07 02:29 ./usr/include/minimap/ksort.h
-rw-r--r-- root/root 3289 2015-12-07 02:29 ./usr/include/minimap/kvec.h
-rw-r--r-- root/root 3053 2015-12-07 02:29 ./usr/include/minimap/minimap.h
-rw-r--r-- root/root 539 2015-12-07 02:29 ./usr/include/minimap/sdust.h
drwxr-xr-x root/root 0 2021-10-11 08:26 ./usr/lib/
drwxr-xr-x root/root 0 2021-10-11 08:26 ./usr/lib/arm-linux-gnueabihf/
-rw-r--r-- root/root 40724 2021-10-11 08:26 ./usr/lib/arm-linux-gnueabihf/libminimap.a
lrwxrwxrwx root/root 0 2021-10-11 08:26 ./usr/lib/arm-linux-gnueabihf/libminimap.so -> libminimap.so.0
drwxr-xr-x root/root 0 2021-10-11 08:26 ./usr/share/
drwxr-xr-x root/root 0 2021-10-11 08:26 ./usr/share/doc/
drwxr-xr-x root/root 0 2021-10-11 08:26 ./usr/share/doc/libminimap-dev/
-rw-r--r-- root/root 807 2021-10-11 08:26 ./usr/share/doc/libminimap-dev/changelog.Debian.gz
-rw-r--r-- root/root 2191 2021-10-11 08:26 ./usr/share/doc/libminimap-dev/copyright
libminimap0-dbgsym_0.2-6_armhf.deb
----------------------------------
new Debian package, version 2.0.
size 44452 bytes: control archive=552 bytes.
394 bytes, 13 lines control
106 bytes, 1 lines md5sums
Package: libminimap0-dbgsym
Source: minimap
Version: 0.2-6
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 58
Depends: libminimap0 (= 0.2-6)
Section: debug
Priority: optional
Multi-Arch: same
Description: debug symbols for libminimap0
Build-Ids: 3cb9ba6a3cc9cf9684d4c948f0adf1de637712a8
drwxr-xr-x root/root 0 2021-10-11 08:26 ./
drwxr-xr-x root/root 0 2021-10-11 08:26 ./usr/
drwxr-xr-x root/root 0 2021-10-11 08:26 ./usr/lib/
drwxr-xr-x root/root 0 2021-10-11 08:26 ./usr/lib/debug/
drwxr-xr-x root/root 0 2021-10-11 08:26 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2021-10-11 08:26 ./usr/lib/debug/.build-id/3c/
-rw-r--r-- root/root 48744 2021-10-11 08:26 ./usr/lib/debug/.build-id/3c/b9ba6a3cc9cf9684d4c948f0adf1de637712a8.debug
drwxr-xr-x root/root 0 2021-10-11 08:26 ./usr/share/
drwxr-xr-x root/root 0 2021-10-11 08:26 ./usr/share/doc/
lrwxrwxrwx root/root 0 2021-10-11 08:26 ./usr/share/doc/libminimap0-dbgsym -> libminimap0
libminimap0_0.2-6_armhf.deb
---------------------------
new Debian package, version 2.0.
size 19284 bytes: control archive=912 bytes.
694 bytes, 18 lines control
228 bytes, 3 lines md5sums
34 bytes, 1 lines shlibs
67 bytes, 2 lines triggers
Package: libminimap0
Source: minimap
Version: 0.2-6
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 48
Depends: libc6 (>= 2.4), zlib1g (>= 1:1.1.4)
Section: libs
Priority: optional
Multi-Arch: same
Homepage: https://github.com/lh3/minimap
Description: library for approximate mapping of long biosequences
Minimap is an experimental tool to efficiently find multiple approximate
mapping positions between two sets of long sequences, such as between DNA
reads and reference genomes, between genomes and between long noisy reads.
.
This package contains a shared library offering the minimap API to custom C
programs.
drwxr-xr-x root/root 0 2021-10-11 08:26 ./
drwxr-xr-x root/root 0 2021-10-11 08:26 ./usr/
drwxr-xr-x root/root 0 2021-10-11 08:26 ./usr/lib/
drwxr-xr-x root/root 0 2021-10-11 08:26 ./usr/lib/arm-linux-gnueabihf/
-rw-r--r-- root/root 34312 2021-10-11 08:26 ./usr/lib/arm-linux-gnueabihf/libminimap.so.0
drwxr-xr-x root/root 0 2021-10-11 08:26 ./usr/share/
drwxr-xr-x root/root 0 2021-10-11 08:26 ./usr/share/doc/
drwxr-xr-x root/root 0 2021-10-11 08:26 ./usr/share/doc/libminimap0/
-rw-r--r-- root/root 807 2021-10-11 08:26 ./usr/share/doc/libminimap0/changelog.Debian.gz
-rw-r--r-- root/root 2191 2021-10-11 08:26 ./usr/share/doc/libminimap0/copyright
minimap-dbgsym_0.2-6_armhf.deb
------------------------------
new Debian package, version 2.0.
size 49656 bytes: control archive=528 bytes.
365 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: minimap-dbgsym
Source: minimap
Version: 0.2-6
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 64
Depends: minimap (= 0.2-6)
Section: debug
Priority: optional
Description: debug symbols for minimap
Build-Ids: 6bbddffbdce4326e4db6c188e28fc7e260aca29e
drwxr-xr-x root/root 0 2021-10-11 08:26 ./
drwxr-xr-x root/root 0 2021-10-11 08:26 ./usr/
drwxr-xr-x root/root 0 2021-10-11 08:26 ./usr/lib/
drwxr-xr-x root/root 0 2021-10-11 08:26 ./usr/lib/debug/
drwxr-xr-x root/root 0 2021-10-11 08:26 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2021-10-11 08:26 ./usr/lib/debug/.build-id/6b/
-rw-r--r-- root/root 55156 2021-10-11 08:26 ./usr/lib/debug/.build-id/6b/bddffbdce4326e4db6c188e28fc7e260aca29e.debug
drwxr-xr-x root/root 0 2021-10-11 08:26 ./usr/share/
drwxr-xr-x root/root 0 2021-10-11 08:26 ./usr/share/doc/
lrwxrwxrwx root/root 0 2021-10-11 08:26 ./usr/share/doc/minimap-dbgsym -> minimap
minimap_0.2-6_armhf.deb
-----------------------
new Debian package, version 2.0.
size 23516 bytes: control archive=960 bytes.
972 bytes, 20 lines control
258 bytes, 4 lines md5sums
Package: minimap
Version: 0.2-6
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 54
Depends: libc6 (>= 2.4), zlib1g (>= 1:1.1.4)
Section: science
Priority: optional
Homepage: https://github.com/lh3/minimap
Description: tool for approximate mapping of long biosequences such as DNA reads
Minimap is an experimental tool to efficiently find multiple approximate
mapping positions between two sets of long biological sequences, such as
between DNA reads and reference genomes, between genomes and between long
noisy reads.
Minimap does not generate alignments as of now and because of this, it is
usually tens of times faster than mainstream aligners.
It does not replace mainstream aligners, but it can be useful when you
want to quickly identify long approximate matches at moderate divergence among
a huge collection of sequences. For this task, it is much faster than most
existing tools.
drwxr-xr-x root/root 0 2021-10-11 08:26 ./
drwxr-xr-x root/root 0 2021-10-11 08:26 ./usr/
drwxr-xr-x root/root 0 2021-10-11 08:26 ./usr/bin/
-rwxr-xr-x root/root 38564 2021-10-11 08:26 ./usr/bin/minimap
drwxr-xr-x root/root 0 2021-10-11 08:26 ./usr/share/
drwxr-xr-x root/root 0 2021-10-11 08:26 ./usr/share/doc/
drwxr-xr-x root/root 0 2021-10-11 08:26 ./usr/share/doc/minimap/
-rw-r--r-- root/root 807 2021-10-11 08:26 ./usr/share/doc/minimap/changelog.Debian.gz
-rw-r--r-- root/root 2191 2021-10-11 08:26 ./usr/share/doc/minimap/copyright
drwxr-xr-x root/root 0 2021-10-11 08:26 ./usr/share/man/
drwxr-xr-x root/root 0 2021-10-11 08:26 ./usr/share/man/man1/
-rw-r--r-- root/root 2365 2021-10-11 08:26 ./usr/share/man/man1/minimap.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 1524
Build-Time: 42
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 272
Job: minimap_0.2-6
Machine Architecture: armhf
Package: minimap
Package-Time: 361
Source-Version: 0.2-6
Space: 1524
Status: successful
Version: 0.2-6
--------------------------------------------------------------------------------
Finished at 2021-10-13T05:40:44Z
Build needed 00:06:01, 1524k disc space