minimap →
0.2-2 →
armhf → 2016-01-19 13:54:08
sbuild (Debian sbuild) 0.65.2 (24 Mar 2015) on testwandboard
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║ minimap 0.2-2 (armhf) 19 Jan 2016 13:50 ║
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Package: minimap
Version: 0.2-2
Source Version: 0.2-2
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'build/minimap-dei5YU/minimap-0.2' with '«PKGBUILDDIR»'
I: NOTICE: Log filtering will replace 'build/minimap-dei5YU' with '«BUILDDIR»'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-a2a5e7fe-3b64-4288-9f63-f55926015465' with '«CHROOT»'
┌──────────────────────────────────────────────────────────────────────────────┐
│ Update chroot │
└──────────────────────────────────────────────────────────────────────────────┘
Get:1 http://172.17.0.1/private stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private stretch-staging/main Sources [8625 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf Packages [10.7 MB]
Fetched 19.3 MB in 24s (803 kB/s)
Reading package lists...
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Fetch source files │
└──────────────────────────────────────────────────────────────────────────────┘
Check APT
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Checking available source versions...
Download source files with APT
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Reading package lists...
Building dependency tree...
Reading state information...
NOTICE: 'minimap' packaging is maintained in the 'Git' version control system at:
git://anonscm.debian.org/debian-med/minimap.git
Please use:
git clone git://anonscm.debian.org/debian-med/minimap.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 111 kB of source archives.
Get:1 http://172.17.0.1/private stretch-staging/main minimap 0.2-2 (dsc) [2027 B]
Get:2 http://172.17.0.1/private stretch-staging/main minimap 0.2-2 (tar) [31.2 kB]
Get:3 http://172.17.0.1/private stretch-staging/main minimap 0.2-2 (diff) [78.0 kB]
Fetched 111 kB in 0s (920 kB/s)
Download complete and in download only mode
Check architectures
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Check dependencies
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Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/«BUILDDIR»/resolver-WPw1JR/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Get:1 file:/«BUILDDIR»/resolver-WPw1JR/apt_archive ./ InRelease
Ign:1 file:/«BUILDDIR»/resolver-WPw1JR/apt_archive ./ InRelease
Get:2 file:/«BUILDDIR»/resolver-WPw1JR/apt_archive ./ Release [2119 B]
Get:2 file:/«BUILDDIR»/resolver-WPw1JR/apt_archive ./ Release [2119 B]
Get:3 file:/«BUILDDIR»/resolver-WPw1JR/apt_archive ./ Release.gpg [299 B]
Get:3 file:/«BUILDDIR»/resolver-WPw1JR/apt_archive ./ Release.gpg [299 B]
Get:4 file:/«BUILDDIR»/resolver-WPw1JR/apt_archive ./ Sources [188 B]
Get:5 file:/«BUILDDIR»/resolver-WPw1JR/apt_archive ./ Packages [507 B]
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Install core build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 19 not upgraded.
Need to get 0 B/768 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 file:/«BUILDDIR»/resolver-WPw1JR/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [768 B]
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package sbuild-build-depends-core-dummy.
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Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
Merged Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), d-shlibs, zlib1g-dev
Filtered Build-Depends: libc6-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), d-shlibs, zlib1g-dev
dpkg-deb: building package 'sbuild-build-depends-minimap-dummy' in '/«BUILDDIR»/resolver-SDFe3I/apt_archive/sbuild-build-depends-minimap-dummy.deb'.
OK
Get:1 file:/«BUILDDIR»/resolver-SDFe3I/apt_archive ./ InRelease
Ign:1 file:/«BUILDDIR»/resolver-SDFe3I/apt_archive ./ InRelease
Get:2 file:/«BUILDDIR»/resolver-SDFe3I/apt_archive ./ Release [2119 B]
Get:2 file:/«BUILDDIR»/resolver-SDFe3I/apt_archive ./ Release [2119 B]
Get:3 file:/«BUILDDIR»/resolver-SDFe3I/apt_archive ./ Release.gpg [299 B]
Get:3 file:/«BUILDDIR»/resolver-SDFe3I/apt_archive ./ Release.gpg [299 B]
Get:4 file:/«BUILDDIR»/resolver-SDFe3I/apt_archive ./ Sources [305 B]
Get:5 file:/«BUILDDIR»/resolver-SDFe3I/apt_archive ./ Packages [562 B]
Reading package lists...
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Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install minimap build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
bsdmainutils d-shlibs debhelper dh-strip-nondeterminism file gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libcroco3
libffi6 libfile-stripnondeterminism-perl libglib2.0-0 libicu55 libmagic1
libpipeline1 libtimedate-perl libunistring0 libxml2 man-db po-debconf
zlib1g-dev
Suggested packages:
wamerican | wordlist whois vacation dh-make gettext-doc autopoint
libasprintf-dev libgettextpo-dev groff less www-browser libmail-box-perl
Recommended packages:
curl | wget | lynx-cur libglib2.0-data shared-mime-info xdg-user-dirs
xml-core libmail-sendmail-perl
The following NEW packages will be installed:
bsdmainutils d-shlibs debhelper dh-strip-nondeterminism file gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libcroco3
libffi6 libfile-stripnondeterminism-perl libglib2.0-0 libicu55 libmagic1
libpipeline1 libtimedate-perl libunistring0 libxml2 man-db po-debconf
sbuild-build-depends-minimap-dummy zlib1g-dev
0 upgraded, 24 newly installed, 0 to remove and 19 not upgraded.
Need to get 16.6 MB/16.6 MB of archives.
After this operation, 58.0 MB of additional disk space will be used.
Get:1 file:/«BUILDDIR»/resolver-SDFe3I/apt_archive ./ sbuild-build-depends-minimap-dummy 0.invalid.0 [822 B]
Get:2 http://172.17.0.1/private stretch-staging/main armhf groff-base armhf 1.22.3-5 [1083 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf bsdmainutils armhf 9.0.6 [177 kB]
Get:4 http://172.17.0.1/private stretch-staging/main armhf libpipeline1 armhf 1.4.1-2 [23.7 kB]
Get:5 http://172.17.0.1/private stretch-staging/main armhf man-db armhf 2.7.5-1 [975 kB]
Get:6 http://172.17.0.1/private stretch-staging/main armhf libunistring0 armhf 0.9.3-5.2 [253 kB]
Get:7 http://172.17.0.1/private stretch-staging/main armhf libmagic1 armhf 1:5.25-2 [250 kB]
Get:8 http://172.17.0.1/private stretch-staging/main armhf file armhf 1:5.25-2 [61.2 kB]
Get:9 http://172.17.0.1/private stretch-staging/main armhf gettext-base armhf 0.19.7-2 [111 kB]
Get:10 http://172.17.0.1/private stretch-staging/main armhf libicu55 armhf 55.1-7 [7380 kB]
Get:11 http://172.17.0.1/private stretch-staging/main armhf libxml2 armhf 2.9.3+dfsg1-1 [800 kB]
Get:12 http://172.17.0.1/private stretch-staging/main armhf d-shlibs all 0.62 [16.9 kB]
Get:13 http://172.17.0.1/private stretch-staging/main armhf libffi6 armhf 3.2.1-4 [18.5 kB]
Get:14 http://172.17.0.1/private stretch-staging/main armhf libglib2.0-0 armhf 2.46.2-3 [2482 kB]
Get:15 http://172.17.0.1/private stretch-staging/main armhf libcroco3 armhf 0.6.11-1 [131 kB]
Get:16 http://172.17.0.1/private stretch-staging/main armhf gettext armhf 0.19.7-2 [1400 kB]
Get:17 http://172.17.0.1/private stretch-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:18 http://172.17.0.1/private stretch-staging/main armhf po-debconf all 1.0.19 [249 kB]
Get:19 http://172.17.0.1/private stretch-staging/main armhf libarchive-zip-perl all 1.56-2 [94.9 kB]
Get:20 http://172.17.0.1/private stretch-staging/main armhf libfile-stripnondeterminism-perl all 0.014-1 [10.6 kB]
Get:21 http://172.17.0.1/private stretch-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:22 http://172.17.0.1/private stretch-staging/main armhf dh-strip-nondeterminism all 0.014-1 [7472 B]
Get:23 http://172.17.0.1/private stretch-staging/main armhf debhelper all 9.20151225 [830 kB]
Get:24 http://172.17.0.1/private stretch-staging/main armhf zlib1g-dev armhf 1:1.2.8.dfsg-2+b1 [197 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Preparing to unpack .../groff-base_1.22.3-5_armhf.deb ...
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Selecting previously unselected package sbuild-build-depends-minimap-dummy.
Preparing to unpack .../sbuild-build-depends-minimap-dummy.deb ...
Unpacking sbuild-build-depends-minimap-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.21-6) ...
Setting up groff-base (1.22.3-5) ...
Setting up bsdmainutils (9.0.6) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libpipeline1:armhf (1.4.1-2) ...
Setting up man-db (2.7.5-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libunistring0:armhf (0.9.3-5.2) ...
Setting up libmagic1:armhf (1:5.25-2) ...
Setting up file (1:5.25-2) ...
Setting up gettext-base (0.19.7-2) ...
Setting up libicu55:armhf (55.1-7) ...
Setting up libxml2:armhf (2.9.3+dfsg1-1) ...
Setting up d-shlibs (0.62) ...
Setting up libffi6:armhf (3.2.1-4) ...
Setting up libglib2.0-0:armhf (2.46.2-3) ...
No schema files found: doing nothing.
Setting up libcroco3:armhf (0.6.11-1) ...
Setting up gettext (0.19.7-2) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up po-debconf (1.0.19) ...
Setting up libarchive-zip-perl (1.56-2) ...
Setting up libfile-stripnondeterminism-perl (0.014-1) ...
Setting up libtimedate-perl (2.3000-2) ...
Setting up zlib1g-dev:armhf (1:1.2.8.dfsg-2+b1) ...
Setting up debhelper (9.20151225) ...
Setting up sbuild-build-depends-minimap-dummy (0.invalid.0) ...
Setting up dh-strip-nondeterminism (0.014-1) ...
Processing triggers for libc-bin (2.21-6) ...
W: No sandbox user '_apt' on the system, can not drop privileges
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build environment │
└──────────────────────────────────────────────────────────────────────────────┘
Kernel: Linux 4.3.0-1-armmp armhf (armv7l)
Toolchain package versions: binutils_2.25.90.20160101-1 dpkg-dev_1.18.4 g++-5_5.3.1-5+rpi1 gcc-5_5.3.1-5+rpi1 libc6-dev_2.21-6 libstdc++-5-dev_5.3.1-5+rpi1 libstdc++6_5.3.1-5+rpi1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: adduser_3.113+nmu3 apt_1.1.10 base-files_9.4+rpi1 base-passwd_3.5.39 bash_4.3-14 binutils_2.25.90.20160101-1 bsdmainutils_9.0.6 bsdutils_1:2.27.1-1 build-essential_11.7 bzip2_1.0.6-8 coreutils_8.23-4 cpio_2.11+dfsg-4.1 cpp_4:5.3.1-1+rpi1 cpp-5_5.3.1-5+rpi1 d-shlibs_0.62 dash_0.5.7-4 debconf_1.5.58 debfoster_2.7-2 debhelper_9.20151225 debianutils_4.5.1 dh-strip-nondeterminism_0.014-1 diffutils_1:3.3-3 dmsetup_2:1.02.114-1 dpkg_1.18.4 dpkg-dev_1.18.4 e2fslibs_1.42.13-1 e2fsprogs_1.42.13-1 fakeroot_1.20.2-1 file_1:5.25-2 findutils_4.4.2-10 g++_4:5.3.1-1+rpi1 g++-5_5.3.1-5+rpi1 gcc_4:5.3.1-1+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-3 gcc-4.9-base_4.9.3-10 gcc-5_5.3.1-5+rpi1 gcc-5-base_5.3.1-5+rpi1 gettext_0.19.7-2 gettext-base_0.19.7-2 gnupg_1.4.20-1 gpgv_1.4.20-1 grep_2.22-1 groff-base_1.22.3-5 gzip_1.6-4 hostname_3.16 init_1.24 init-system-helpers_1.24 initramfs-tools_0.120 initscripts_2.88dsf-59.2 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-4+rpi1 kmod_21-1 libacl1_2.2.52-2 libapparmor1_2.10-2+b3 libapt-pkg4.16_1.0.10.2 libapt-pkg5.0_1.1.10 libarchive-zip-perl_1.56-2 libasan2_5.3.1-5+rpi1 libatomic1_5.3.1-5+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.4.5-1 libaudit1_1:2.4.5-1 libblkid1_2.27.1-1 libbz2-1.0_1.0.6-8 libc-bin_2.21-6 libc-dev-bin_2.21-6 libc6_2.21-6 libc6-dev_2.21-6 libcap2_1:2.24-12 libcap2-bin_1:2.24-12 libcc1-0_5.3.1-5+rpi1 libcomerr2_1.42.13-1 libcroco3_0.6.11-1 libcryptsetup4_2:1.6.6-5 libdb5.3_5.3.28-11 libdbus-1-3_1.10.6-1 libdebconfclient0_0.201 libdevmapper1.02.1_2:1.02.114-1 libdpkg-perl_1.18.4 libdrm2_2.4.65-3 libfakeroot_1.20.2-1 libfdisk1_2.27.1-1 libffi6_3.2.1-4 libfile-stripnondeterminism-perl_0.014-1 libgc1c2_1:7.4.2-7.3 libgcc-5-dev_5.3.1-5+rpi1 libgcc1_1:5.3.1-5+rpi1 libgcrypt20_1.6.4-4 libgdbm3_1.8.3-13.1 libglib2.0-0_2.46.2-3 libgmp10_2:6.1.0+dfsg-2 libgomp1_5.3.1-5+rpi1 libgpg-error0_1.21-1 libicu55_55.1-7 libisl13_0.14-2 libisl15_0.15-3 libklibc_2.0.4-4+rpi1 libkmod2_21-1 liblzma5_5.1.1alpha+20120614-2.1 libmagic1_1:5.25-2 libmount1_2.27.1-1 libmpc3_1.0.3-1 libmpfr4_3.1.3-2 libncurses5_6.0+20151024-2 libncursesw5_6.0+20151024-2 libpam-modules_1.1.8-3.1 libpam-modules-bin_1.1.8-3.1 libpam-runtime_1.1.8-3.1 libpam0g_1.1.8-3.1 libpcre3_2:8.35-8 libperl5.22_5.22.1-3 libpipeline1_1.4.1-2 libplymouth4_0.9.2-3 libpng12-0_1.2.54-1 libprocps4_2:3.3.10-2 libprocps5_2:3.3.11-3 libreadline6_6.3-8+b3 libseccomp2_2.2.3-2 libselinux1_2.4-3 libsemanage-common_2.4-3 libsemanage1_2.4-3 libsepol1_2.4-2 libsmartcols1_2.27.1-1 libss2_1.42.13-1 libstdc++-5-dev_5.3.1-5+rpi1 libstdc++6_5.3.1-5+rpi1 libsystemd0_228-2 libtext-charwidth-perl_0.04-7+b6 libtext-iconv-perl_1.7-5+b7 libtext-wrapi18n-perl_0.06-7.1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20151024-2 libubsan0_5.3.1-5+rpi1 libudev1_228-2 libunistring0_0.9.3-5.2 libusb-0.1-4_2:0.1.12-27 libustr-1.0-1_1.0.4-5 libuuid1_2.27.1-1 libxml2_2.9.3+dfsg1-1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.2-3.1 lsb-base_4.1+Debian13+rpi1+nmu1 make_4.0-8.2 makedev_2.3.1-93 man-db_2.7.5-1 manpages_3.74-1 mawk_1.3.3-17 mount_2.27.1-1 multiarch-support_2.21-6 ncurses-base_6.0+20151024-2 ncurses-bin_6.0+20151024-2 passwd_1:4.2-3.1 patch_2.7.5-1 perl_5.22.1-3 perl-base_5.22.1-3 perl-modules-5.22_5.22.1-3 plymouth_0.9.2-3 po-debconf_1.0.19 procps_2:3.3.11-3 raspbian-archive-keyring_20120528.2 readline-common_6.3-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-minimap-dummy_0.invalid.0 sed_4.2.2-6.1 sensible-utils_0.0.9 startpar_0.59-3 systemd_228-2 systemd-sysv_228-2 sysv-rc_2.88dsf-59.2 sysvinit-utils_2.88dsf-59.2 tar_1.28-2.1 tzdata_2015g-1 udev_228-2 util-linux_2.27.1-1 xz-utils_5.1.1alpha+20120614-2.1 zlib1g_1:1.2.8.dfsg-2+b1 zlib1g-dev_1:1.2.8.dfsg-2+b1
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
└──────────────────────────────────────────────────────────────────────────────┘
Unpack source
─────────────
gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Wed Jan 13 22:20:40 2016 UTC using RSA key ID 04A3610B
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./minimap_0.2-2.dsc
dpkg-source: info: extracting minimap in minimap-0.2
dpkg-source: info: unpacking minimap_0.2.orig.tar.gz
dpkg-source: info: unpacking minimap_0.2-2.debian.tar.xz
dpkg-source: info: applying make_shared_lib
dpkg-source: info: applying hardening
dpkg-source: info: applying ensure_64bit_value
Check disc space
────────────────
Sufficient free space for build
User Environment
────────────────
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-a2a5e7fe-3b64-4288-9f63-f55926015465
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package minimap
dpkg-buildpackage: source version 0.2-2
dpkg-buildpackage: source distribution unstable
dpkg-source --before-build minimap-0.2
dpkg-buildpackage: host architecture armhf
fakeroot debian/rules clean
dh clean
dh_testdir
dh_auto_clean
make -j1 clean
make[1]: Entering directory '/«PKGBUILDDIR»'
rm -fr gmon.out *.o a.out minimap sdust minimap-lite *~ *.a *.dSYM session*
make[1]: Leaving directory '/«PKGBUILDDIR»'
dh_clean
debian/rules build-arch
dh build-arch
dh_testdir -a
dh_auto_configure -a
dh_auto_build -a
make -j1
make[1]: Entering directory '/«PKGBUILDDIR»'
gcc -c -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat -Wno-unused-function -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -I. main.c -o main.o
gcc -c -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat -Wno-unused-function -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -I. kthread.c -o kthread.o
gcc -c -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat -Wno-unused-function -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -I. misc.c -o misc.o
gcc -c -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat -Wno-unused-function -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -I. bseq.c -o bseq.o
gcc -c -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat -Wno-unused-function -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -I. sketch.c -o sketch.o
gcc -c -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat -Wno-unused-function -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -I. sdust.c -o sdust.o
gcc -c -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat -Wno-unused-function -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -I. index.c -o index.o
index.c: In function 'mm_idx_load':
index.c:317:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
fread(&mi->freq_thres, sizeof(float), 1, fp);
^
index.c:319:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
fread(mi->len, 4, mi->n, fp);
^
index.c:324:4: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
fread(&l, 1, 1, fp);
^
index.c:326:4: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
fread(mi->name[i], 1, l, fp);
^
index.c:335:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
fread(&b->n, 4, 1, fp);
^
index.c:337:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
fread(b->p, 8, b->n, fp);
^
index.c:338:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
fread(&size, 4, 1, fp);
^
index.c:345:4: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
fread(x, 8, 2, fp);
^
gcc -c -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat -Wno-unused-function -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -I. map.c -o map.o
ar -csru libminimap.a kthread.o misc.o bseq.o sketch.o sdust.o index.o map.o
ar: `u' modifier ignored since `D' is the default (see `U')
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat -Wno-unused-function -fPIC -Wl,-z,relro main.o -o minimap -L. -lminimap -lm -lz -lpthread
gcc -shared -o libminimap.so.0 kthread.o misc.o bseq.o sketch.o sdust.o index.o map.o -fPIC -Wl,-soname,libminimap.so.0 -lm -lz -lpthread -Wl,-z,relro
make[1]: Leaving directory '/«PKGBUILDDIR»'
dh_auto_test -a
fakeroot debian/rules binary-arch
dh binary-arch
dh_testroot -a
dh_prep -a
debian/rules override_dh_auto_install
make[1]: Entering directory '/«PKGBUILDDIR»'
ln -s libminimap.so.* libminimap.so
d-shlibmove --commit \
--multiarch \
--devunversioned \
--movedev "minimap.h" /usr/include/ \
libminimap.so
Library package automatic movement utility
--> zlib1g-dev package exists.
set -e
install -d -m 755 debian/libminimap-dev/usr/lib/arm-linux-gnueabihf
install -d -m 755 debian/libminimap0/usr/lib/arm-linux-gnueabihf
mv ./libminimap.a debian/libminimap-dev/usr/lib/arm-linux-gnueabihf
mv ./libminimap.la debian/libminimap-dev/usr/lib/arm-linux-gnueabihf || true
mv ./libminimap.so debian/libminimap-dev/usr/lib/arm-linux-gnueabihf
mv /«PKGBUILDDIR»/libminimap.so.0 debian/libminimap0/usr/lib/arm-linux-gnueabihf
PKGDEV=libminimap-dev
PKGSHL=libminimap0
install -d -m 755 debian/libminimap-dev//usr/include/
mv minimap.h debian/libminimap-dev//usr/include/
mv: cannot stat './libminimap.la': No such file or directory
make[1]: Leaving directory '/«PKGBUILDDIR»'
dh_install -a
dh_installdocs -a
dh_installchangelogs -a
dh_installman -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/minimap/usr/bin/minimap was not linked against libm.so.6 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libminimap0/usr/lib/arm-linux-gnueabihf/libminimap.so.0 was not linked against libm.so.6 (it uses none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: Depends field of package libminimap-dev: unknown substitution variable ${shlibs:Depends}
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package libminimap-dev: unused substitution variable ${devlibs:Depends}
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'libminimap0-dbgsym' in '../libminimap0-dbgsym_0.2-2_armhf.deb'.
dpkg-deb: building package 'minimap-dbgsym' in '../minimap-dbgsym_0.2-2_armhf.deb'.
dpkg-deb: building package 'libminimap-dev' in '../libminimap-dev_0.2-2_armhf.deb'.
dpkg-deb: building package 'minimap' in '../minimap_0.2-2_armhf.deb'.
dpkg-deb: building package 'libminimap0' in '../libminimap0_0.2-2_armhf.deb'.
dpkg-genchanges -B -mRaspbian wandboard test autobuilder <root@raspbian.org> >../minimap_0.2-2_armhf.changes
dpkg-genchanges: warning: package libminimap0-dbgsym listed in files list but not in control info
dpkg-genchanges: warning: package minimap-dbgsym listed in files list but not in control info
dpkg-genchanges: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build minimap-0.2
dpkg-buildpackage: binary-only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
Build finished at 20160119-1354
Finished
────────
I: Built successfully
┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build Chroot │
└──────────────────────────────────────────────────────────────────────────────┘
┌──────────────────────────────────────────────────────────────────────────────┐
│ Changes │
└──────────────────────────────────────────────────────────────────────────────┘
minimap_0.2-2_armhf.changes:
────────────────────────────
Format: 1.8
Date: Wed, 13 Jan 2016 22:18:46 +0000
Source: minimap
Binary: minimap libminimap0 libminimap-dev
Architecture: armhf
Version: 0.2-2
Distribution: stretch-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Sascha Steinbiss <sascha@steinbiss.name>
Description:
libminimap-dev - development headers for libminimap
libminimap0 - library for approximate mapping of long biosequences
minimap - tool for approximate mapping of long biosequences such as DNA rea
Changes:
minimap (0.2-2) unstable; urgency=medium
.
* Fix building on 32-bit archs.
Checksums-Sha1:
5da2cc4e685097dfd53ec7daba925b7cc17277f6 21878 libminimap-dev_0.2-2_armhf.deb
8c0f4afc634602144ddbdd8d934c8c2457767fcf 41322 libminimap0-dbgsym_0.2-2_armhf.deb
dd848469e0b4ef03d39c837d88bcf03f98ca362d 20506 libminimap0_0.2-2_armhf.deb
552b62ac77b7efc7b824ee12c6bd431833e11801 46040 minimap-dbgsym_0.2-2_armhf.deb
12a41cd8e9a1bfc5736e4a2932842534a1ec8586 24726 minimap_0.2-2_armhf.deb
Checksums-Sha256:
1f8cd78701ed1407c8dc07a724a2dcc30d4a00fef15c33701c9e6e71655ad4fc 21878 libminimap-dev_0.2-2_armhf.deb
8bf0f2717d1248ad758fc0583f9333757dc596f58e39af065e7629b92332e1f6 41322 libminimap0-dbgsym_0.2-2_armhf.deb
de033cce7bdbacffc70fd76947cc3e544627fa287e5e512ebf35e84c9c6545d5 20506 libminimap0_0.2-2_armhf.deb
bc185596564405de6a02818f309a85713883d57fd741e6a9bbd553cdd7ec97fa 46040 minimap-dbgsym_0.2-2_armhf.deb
c4d7c5c938a1d6de07d00af31b1f8d2bb87f1a1b07941cc17b27f8e1cd9eb3a0 24726 minimap_0.2-2_armhf.deb
Files:
6637b1727a18307ada7e2bdc93c80281 21878 libdevel optional libminimap-dev_0.2-2_armhf.deb
56b9edf84995ec7ec67b10dda21ed318 41322 debug extra libminimap0-dbgsym_0.2-2_armhf.deb
465409faa2f494b884a198e624c00248 20506 libs optional libminimap0_0.2-2_armhf.deb
8b7889afdb693cafb5baabde0bfe40b5 46040 debug extra minimap-dbgsym_0.2-2_armhf.deb
15b9bba0a0b8db05aa82d12d08df657b 24726 science optional minimap_0.2-2_armhf.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
libminimap-dev_0.2-2_armhf.deb
──────────────────────────────
new debian package, version 2.0.
size 21878 bytes: control archive=750 bytes.
686 bytes, 17 lines control
287 bytes, 4 lines md5sums
Package: libminimap-dev
Source: minimap
Version: 0.2-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 64
Depends: libminimap0 (= 0.2-2), zlib1g-dev
Section: libdevel
Priority: optional
Homepage: https://github.com/lh3/minimap
Description: development headers for libminimap
Minimap is an experimental tool to efficiently find multiple approximate
mapping positions between two sets of long sequences, such as between
DNA reads and reference genomes, between genomes and between long noisy reads.
.
This package contains the C library headers for using minimap in custom tools,
along with a static library.
drwxr-xr-x root/root 0 2016-01-19 13:53 ./
drwxr-xr-x root/root 0 2016-01-19 13:53 ./usr/
drwxr-xr-x root/root 0 2016-01-19 13:53 ./usr/include/
-rw-r--r-- root/root 3053 2015-12-07 02:29 ./usr/include/minimap.h
drwxr-xr-x root/root 0 2016-01-19 13:53 ./usr/lib/
drwxr-xr-x root/root 0 2016-01-19 13:53 ./usr/lib/arm-linux-gnueabihf/
-rw-r--r-- root/root 47400 2016-01-19 13:53 ./usr/lib/arm-linux-gnueabihf/libminimap.a
lrwxrwxrwx root/root 0 2016-01-19 13:53 ./usr/lib/arm-linux-gnueabihf/libminimap.so -> libminimap.so.0
drwxr-xr-x root/root 0 2016-01-19 13:53 ./usr/share/
drwxr-xr-x root/root 0 2016-01-19 13:53 ./usr/share/doc/
drwxr-xr-x root/root 0 2016-01-19 13:53 ./usr/share/doc/libminimap-dev/
-rw-r--r-- root/root 211 2016-01-13 22:18 ./usr/share/doc/libminimap-dev/changelog.Debian.gz
-rw-r--r-- root/root 2185 2016-01-11 22:02 ./usr/share/doc/libminimap-dev/copyright
libminimap0-dbgsym_0.2-2_armhf.deb
──────────────────────────────────
new debian package, version 2.0.
size 41322 bytes: control archive=489 bytes.
415 bytes, 13 lines control
106 bytes, 1 lines md5sums
Package: libminimap0-dbgsym
Source: minimap
Version: 0.2-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 56
Depends: libminimap0 (= 0.2-2)
Section: debug
Priority: extra
Homepage: https://github.com/lh3/minimap
Description: Debug symbols for libminimap0
Auto-Built-Package: debug-symbols
Build-Ids: 03b7d9ab24afcfc36b202ec06b35b10c633b8dd7
drwxr-xr-x root/root 0 2016-01-19 13:53 ./
drwxr-xr-x root/root 0 2016-01-19 13:53 ./usr/
drwxr-xr-x root/root 0 2016-01-19 13:53 ./usr/lib/
drwxr-xr-x root/root 0 2016-01-19 13:53 ./usr/lib/debug/
drwxr-xr-x root/root 0 2016-01-19 13:53 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2016-01-19 13:53 ./usr/lib/debug/.build-id/03/
-rw-r--r-- root/root 46284 2016-01-19 13:53 ./usr/lib/debug/.build-id/03/b7d9ab24afcfc36b202ec06b35b10c633b8dd7.debug
drwxr-xr-x root/root 0 2016-01-19 13:53 ./usr/share/
drwxr-xr-x root/root 0 2016-01-19 13:53 ./usr/share/doc/
lrwxrwxrwx root/root 0 2016-01-19 13:53 ./usr/share/doc/libminimap0-dbgsym -> libminimap0
libminimap0_0.2-2_armhf.deb
───────────────────────────
new debian package, version 2.0.
size 20506 bytes: control archive=809 bytes.
677 bytes, 17 lines control
228 bytes, 3 lines md5sums
25 bytes, 1 lines shlibs
60 bytes, 2 lines triggers
Package: libminimap0
Source: minimap
Version: 0.2-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 56
Depends: libc6 (>= 2.4), zlib1g (>= 1:1.1.4)
Section: libs
Priority: optional
Homepage: https://github.com/lh3/minimap
Description: library for approximate mapping of long biosequences
Minimap is an experimental tool to efficiently find multiple approximate
mapping positions between two sets of long sequences, such as between DNA
reads and reference genomes, between genomes and between long noisy reads.
.
This package contains a shared library offering the minimap API to custom C
programs.
drwxr-xr-x root/root 0 2016-01-19 13:53 ./
drwxr-xr-x root/root 0 2016-01-19 13:53 ./usr/
drwxr-xr-x root/root 0 2016-01-19 13:53 ./usr/lib/
drwxr-xr-x root/root 0 2016-01-19 13:53 ./usr/lib/arm-linux-gnueabihf/
-rw-r--r-- root/root 42876 2016-01-19 13:53 ./usr/lib/arm-linux-gnueabihf/libminimap.so.0
drwxr-xr-x root/root 0 2016-01-19 13:53 ./usr/share/
drwxr-xr-x root/root 0 2016-01-19 13:53 ./usr/share/doc/
drwxr-xr-x root/root 0 2016-01-19 13:53 ./usr/share/doc/libminimap0/
-rw-r--r-- root/root 211 2016-01-13 22:18 ./usr/share/doc/libminimap0/changelog.Debian.gz
-rw-r--r-- root/root 2185 2016-01-11 22:02 ./usr/share/doc/libminimap0/copyright
minimap-dbgsym_0.2-2_armhf.deb
──────────────────────────────
new debian package, version 2.0.
size 46040 bytes: control archive=484 bytes.
403 bytes, 13 lines control
106 bytes, 1 lines md5sums
Package: minimap-dbgsym
Source: minimap
Version: 0.2-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 61
Depends: minimap (= 0.2-2)
Section: debug
Priority: extra
Homepage: https://github.com/lh3/minimap
Description: Debug symbols for minimap
Auto-Built-Package: debug-symbols
Build-Ids: 098e529decbd14494b0afbb303e7bd7733bb549c
drwxr-xr-x root/root 0 2016-01-19 13:53 ./
drwxr-xr-x root/root 0 2016-01-19 13:53 ./usr/
drwxr-xr-x root/root 0 2016-01-19 13:53 ./usr/lib/
drwxr-xr-x root/root 0 2016-01-19 13:53 ./usr/lib/debug/
drwxr-xr-x root/root 0 2016-01-19 13:53 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2016-01-19 13:53 ./usr/lib/debug/.build-id/09/
-rw-r--r-- root/root 52196 2016-01-19 13:53 ./usr/lib/debug/.build-id/09/8e529decbd14494b0afbb303e7bd7733bb549c.debug
drwxr-xr-x root/root 0 2016-01-19 13:53 ./usr/share/
drwxr-xr-x root/root 0 2016-01-19 13:53 ./usr/share/doc/
lrwxrwxrwx root/root 0 2016-01-19 13:53 ./usr/share/doc/minimap-dbgsym -> minimap
minimap_0.2-2_armhf.deb
───────────────────────
new debian package, version 2.0.
size 24726 bytes: control archive=873 bytes.
972 bytes, 20 lines control
258 bytes, 4 lines md5sums
Package: minimap
Version: 0.2-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 62
Depends: libc6 (>= 2.4), zlib1g (>= 1:1.1.4)
Section: science
Priority: optional
Homepage: https://github.com/lh3/minimap
Description: tool for approximate mapping of long biosequences such as DNA reads
Minimap is an experimental tool to efficiently find multiple approximate
mapping positions between two sets of long biological sequences, such as
between DNA reads and reference genomes, between genomes and between long
noisy reads.
Minimap does not generate alignments as of now and because of this, it is
usually tens of times faster than mainstream aligners.
It does not replace mainstream aligners, but it can be useful when you
want to quickly identify long approximate matches at moderate divergence among
a huge collection of sequences. For this task, it is much faster than most
existing tools.
drwxr-xr-x root/root 0 2016-01-19 13:53 ./
drwxr-xr-x root/root 0 2016-01-19 13:53 ./usr/
drwxr-xr-x root/root 0 2016-01-19 13:53 ./usr/bin/
-rwxr-xr-x root/root 47048 2016-01-19 13:53 ./usr/bin/minimap
drwxr-xr-x root/root 0 2016-01-19 13:53 ./usr/share/
drwxr-xr-x root/root 0 2016-01-19 13:53 ./usr/share/doc/
drwxr-xr-x root/root 0 2016-01-19 13:53 ./usr/share/doc/minimap/
-rw-r--r-- root/root 211 2016-01-13 22:18 ./usr/share/doc/minimap/changelog.Debian.gz
-rw-r--r-- root/root 2185 2016-01-11 22:02 ./usr/share/doc/minimap/copyright
drwxr-xr-x root/root 0 2016-01-19 13:53 ./usr/share/man/
drwxr-xr-x root/root 0 2016-01-19 13:53 ./usr/share/man/man1/
-rw-r--r-- root/root 2365 2016-01-19 13:53 ./usr/share/man/man1/minimap.1.gz
┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
┌──────────────────────────────────────────────────────────────────────────────┐
│ Cleanup │
└──────────────────────────────────────────────────────────────────────────────┘
Purging /«BUILDDIR»
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary │
└──────────────────────────────────────────────────────────────────────────────┘
Build Architecture: armhf
Build-Space: 1524
Build-Time: 57
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 139
Job: minimap_0.2-2
Machine Architecture: armhf
Package: minimap
Package-Time: 240
Source-Version: 0.2-2
Space: 1524
Status: successful
Version: 0.2-2
────────────────────────────────────────────────────────────────────────────────
Finished at 20160119-1354
Build needed 00:04:00, 1524k disc space