miniasm →
0.2+dfsg-1 →
armhf → 2016-02-01 23:15:07
sbuild (Debian sbuild) 0.65.2 (24 Mar 2015) on bm-wb-04
╔══════════════════════════════════════════════════════════════════════════════╗
║ miniasm 0.2+dfsg-1 (armhf) 01 Feb 2016 23:07 ║
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Package: miniasm
Version: 0.2+dfsg-1
Source Version: 0.2+dfsg-1
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'build/miniasm-SmZrrx/miniasm-0.2+dfsg' with '«PKGBUILDDIR»'
I: NOTICE: Log filtering will replace 'build/miniasm-SmZrrx' with '«BUILDDIR»'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-4872d9bd-6f3e-47c7-b827-bff9ef04c711' with '«CHROOT»'
┌──────────────────────────────────────────────────────────────────────────────┐
│ Update chroot │
└──────────────────────────────────────────────────────────────────────────────┘
Get:1 http://172.17.0.1/private stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private stretch-staging/main Sources [8656 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf Packages [10.7 MB]
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│ Fetch source files │
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Check APT
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Building dependency tree...
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NOTICE: 'miniasm' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/miniasm.git
Please use:
git clone https://anonscm.debian.org/git/debian-med/miniasm.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 118 kB of source archives.
Get:1 http://172.17.0.1/private stretch-staging/main miniasm 0.2+dfsg-1 (dsc) [1942 B]
Get:2 http://172.17.0.1/private stretch-staging/main miniasm 0.2+dfsg-1 (tar) [37.1 kB]
Get:3 http://172.17.0.1/private stretch-staging/main miniasm 0.2+dfsg-1 (diff) [79.3 kB]
Fetched 118 kB in 0s (2152 kB/s)
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Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/«BUILDDIR»/resolver-YxFYbd/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Get:1 file:/«BUILDDIR»/resolver-YxFYbd/apt_archive ./ InRelease
Ign:1 file:/«BUILDDIR»/resolver-YxFYbd/apt_archive ./ InRelease
Get:2 file:/«BUILDDIR»/resolver-YxFYbd/apt_archive ./ Release [2119 B]
Get:2 file:/«BUILDDIR»/resolver-YxFYbd/apt_archive ./ Release [2119 B]
Get:3 file:/«BUILDDIR»/resolver-YxFYbd/apt_archive ./ Release.gpg [299 B]
Get:3 file:/«BUILDDIR»/resolver-YxFYbd/apt_archive ./ Release.gpg [299 B]
Get:4 file:/«BUILDDIR»/resolver-YxFYbd/apt_archive ./ Sources [208 B]
Get:5 file:/«BUILDDIR»/resolver-YxFYbd/apt_archive ./ Packages [529 B]
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Install core build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
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Building dependency tree...
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The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 47 not upgraded.
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Get:1 file:/«BUILDDIR»/resolver-YxFYbd/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [768 B]
debconf: delaying package configuration, since apt-utils is not installed
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Merged Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), zlib1g-dev
Filtered Build-Depends: libc6-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), zlib1g-dev
dpkg-deb: building package 'sbuild-build-depends-miniasm-dummy' in '/«BUILDDIR»/resolver-MFhXmb/apt_archive/sbuild-build-depends-miniasm-dummy.deb'.
OK
Get:1 file:/«BUILDDIR»/resolver-MFhXmb/apt_archive ./ InRelease
Ign:1 file:/«BUILDDIR»/resolver-MFhXmb/apt_archive ./ InRelease
Get:2 file:/«BUILDDIR»/resolver-MFhXmb/apt_archive ./ Release [2119 B]
Get:2 file:/«BUILDDIR»/resolver-MFhXmb/apt_archive ./ Release [2119 B]
Get:3 file:/«BUILDDIR»/resolver-MFhXmb/apt_archive ./ Release.gpg [299 B]
Get:3 file:/«BUILDDIR»/resolver-MFhXmb/apt_archive ./ Release.gpg [299 B]
Get:4 file:/«BUILDDIR»/resolver-MFhXmb/apt_archive ./ Sources [319 B]
Get:5 file:/«BUILDDIR»/resolver-MFhXmb/apt_archive ./ Packages [573 B]
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Install miniasm build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
autotools-dev bsdmainutils debhelper dh-strip-nondeterminism file gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libcroco3
libffi6 libfile-stripnondeterminism-perl libglib2.0-0 libicu55 libmagic1
libpipeline1 libunistring0 libxml2 man-db po-debconf zlib1g-dev
Suggested packages:
wamerican | wordlist whois vacation dh-make gettext-doc autopoint
libasprintf-dev libgettextpo-dev groff less www-browser libmail-box-perl
Recommended packages:
curl | wget | lynx-cur libglib2.0-data shared-mime-info xdg-user-dirs
xml-core libmail-sendmail-perl
The following NEW packages will be installed:
autotools-dev bsdmainutils debhelper dh-strip-nondeterminism file gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libcroco3
libffi6 libfile-stripnondeterminism-perl libglib2.0-0 libicu55 libmagic1
libpipeline1 libunistring0 libxml2 man-db po-debconf
sbuild-build-depends-miniasm-dummy zlib1g-dev
0 upgraded, 23 newly installed, 0 to remove and 47 not upgraded.
Need to get 16.6 MB/16.6 MB of archives.
After this operation, 58.0 MB of additional disk space will be used.
Get:1 file:/«BUILDDIR»/resolver-MFhXmb/apt_archive ./ sbuild-build-depends-miniasm-dummy 0.invalid.0 [816 B]
Get:2 http://172.17.0.1/private stretch-staging/main armhf groff-base armhf 1.22.3-5 [1083 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf bsdmainutils armhf 9.0.6 [177 kB]
Get:4 http://172.17.0.1/private stretch-staging/main armhf libpipeline1 armhf 1.4.1-2 [23.7 kB]
Get:5 http://172.17.0.1/private stretch-staging/main armhf man-db armhf 2.7.5-1 [975 kB]
Get:6 http://172.17.0.1/private stretch-staging/main armhf libunistring0 armhf 0.9.3-5.2 [253 kB]
Get:7 http://172.17.0.1/private stretch-staging/main armhf libmagic1 armhf 1:5.25-2 [250 kB]
Get:8 http://172.17.0.1/private stretch-staging/main armhf file armhf 1:5.25-2 [61.2 kB]
Get:9 http://172.17.0.1/private stretch-staging/main armhf gettext-base armhf 0.19.7-2 [111 kB]
Get:10 http://172.17.0.1/private stretch-staging/main armhf libicu55 armhf 55.1-7 [7380 kB]
Get:11 http://172.17.0.1/private stretch-staging/main armhf libxml2 armhf 2.9.3+dfsg1-1 [800 kB]
Get:12 http://172.17.0.1/private stretch-staging/main armhf autotools-dev all 20150820.1 [71.7 kB]
Get:13 http://172.17.0.1/private stretch-staging/main armhf libffi6 armhf 3.2.1-4 [18.5 kB]
Get:14 http://172.17.0.1/private stretch-staging/main armhf libglib2.0-0 armhf 2.46.2-3 [2482 kB]
Get:15 http://172.17.0.1/private stretch-staging/main armhf libcroco3 armhf 0.6.11-1 [131 kB]
Get:16 http://172.17.0.1/private stretch-staging/main armhf gettext armhf 0.19.7-2 [1400 kB]
Get:17 http://172.17.0.1/private stretch-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:18 http://172.17.0.1/private stretch-staging/main armhf po-debconf all 1.0.19 [249 kB]
Get:19 http://172.17.0.1/private stretch-staging/main armhf libarchive-zip-perl all 1.56-2 [94.9 kB]
Get:20 http://172.17.0.1/private stretch-staging/main armhf libfile-stripnondeterminism-perl all 0.014-1 [10.6 kB]
Get:21 http://172.17.0.1/private stretch-staging/main armhf dh-strip-nondeterminism all 0.014-1 [7472 B]
Get:22 http://172.17.0.1/private stretch-staging/main armhf debhelper all 9.20160115 [827 kB]
Get:23 http://172.17.0.1/private stretch-staging/main armhf zlib1g-dev armhf 1:1.2.8.dfsg-2+b1 [197 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Processing triggers for libc-bin (2.21-6) ...
Setting up groff-base (1.22.3-5) ...
Setting up bsdmainutils (9.0.6) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libpipeline1:armhf (1.4.1-2) ...
Setting up man-db (2.7.5-1) ...
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Build environment │
└──────────────────────────────────────────────────────────────────────────────┘
Kernel: Linux 3.19.0-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.25.90.20160101-2 dpkg-dev_1.18.4 g++-5_5.3.1-5+rpi1 gcc-5_5.3.1-5+rpi1 libc6-dev_2.21-6 libstdc++-4.9-dev_4.9.3-10 libstdc++-5-dev_5.3.1-5+rpi1 libstdc++6_5.3.1-5+rpi1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: acl_2.2.52-2 adduser_3.113+nmu3 apt_1.2 autotools-dev_20150820.1 base-files_9.5+rpi1 base-passwd_3.5.39 bash_4.3-14 binutils_2.25.90.20160101-2 bsdmainutils_9.0.6 bsdutils_1:2.27.1-1 build-essential_11.7 bzip2_1.0.6-8 coreutils_8.23-4 cpio_2.11+dfsg-4.1 cpp_4:5.3.1-1+rpi1 cpp-5_5.3.1-5+rpi1 dash_0.5.7-4 debconf_1.5.58 debfoster_2.7-2 debhelper_9.20160115 debianutils_4.5.1 dh-strip-nondeterminism_0.014-1 diffutils_1:3.3-3 dmsetup_2:1.02.114-1 dpkg_1.18.4 dpkg-dev_1.18.4 e2fslibs_1.42.13-1 e2fsprogs_1.42.13-1 fakeroot_1.20.2-1 file_1:5.25-2 findutils_4.6.0-2 g++_4:5.3.1-1+rpi1 g++-5_5.3.1-5+rpi1 gcc_4:5.3.1-1+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-3 gcc-4.9-base_4.9.3-10 gcc-5_5.3.1-5+rpi1 gcc-5-base_5.3.1-5+rpi1 gettext_0.19.7-2 gettext-base_0.19.7-2 gnupg_1.4.20-1 gpgv_1.4.20-1 grep_2.22-1 groff-base_1.22.3-5 gzip_1.6-4 hostname_3.16 init_1.24 init-system-helpers_1.24 initramfs-tools_0.120 initscripts_2.88dsf-59.2 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-6+rpi1 kmod_21-1 libacl1_2.2.52-2 libapparmor1_2.10-2+b3 libapt-pkg4.12_1.0.9.10 libapt-pkg5.0_1.2 libarchive-zip-perl_1.56-2 libasan1_4.9.3-10 libasan2_5.3.1-5+rpi1 libatomic1_5.3.1-5+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.4.5-1 libaudit1_1:2.4.5-1 libblkid1_2.27.1-1 libbz2-1.0_1.0.6-8 libc-bin_2.21-6 libc-dev-bin_2.21-6 libc6_2.21-6 libc6-dev_2.21-6 libcap2_1:2.24-12 libcap2-bin_1:2.24-12 libcc1-0_5.3.1-5+rpi1 libcomerr2_1.42.13-1 libcroco3_0.6.11-1 libcryptsetup4_2:1.7.0-2 libdb5.3_5.3.28-11 libdbus-1-3_1.10.6-1 libdebconfclient0_0.201 libdevmapper1.02.1_2:1.02.114-1 libdpkg-perl_1.18.4 libdrm2_2.4.66-2 libfakeroot_1.20.2-1 libfdisk1_2.27.1-1 libffi6_3.2.1-4 libfile-stripnondeterminism-perl_0.014-1 libgc1c2_1:7.4.2-7.3 libgcc-4.9-dev_4.9.3-10 libgcc-5-dev_5.3.1-5+rpi1 libgcc1_1:5.3.1-5+rpi1 libgcrypt20_1.6.4-4 libgdbm3_1.8.3-13.1 libglib2.0-0_2.46.2-3 libgmp10_2:6.1.0+dfsg-2 libgomp1_5.3.1-5+rpi1 libgpg-error0_1.21-1 libicu55_55.1-7 libisl15_0.15-3 libklibc_2.0.4-6+rpi1 libkmod2_21-1 liblz4-1_0.0~r131-1 liblzma5_5.1.1alpha+20120614-2.1 libmagic1_1:5.25-2 libmount1_2.27.1-1 libmpc3_1.0.3-1 libmpfr4_3.1.3-2 libncurses5_6.0+20151024-2 libncursesw5_6.0+20151024-2 libpam-modules_1.1.8-3.2 libpam-modules-bin_1.1.8-3.2 libpam-runtime_1.1.8-3.2 libpam0g_1.1.8-3.2 libpcre3_2:8.38-1 libperl5.22_5.22.1-4 libpipeline1_1.4.1-2 libpng12-0_1.2.54-1 libprocps3_2:3.3.9-9 libprocps5_2:3.3.11-3 libreadline6_6.3-8+b3 libseccomp2_2.2.3-2 libselinux1_2.4-3 libsemanage-common_2.4-3 libsemanage1_2.4-3 libsepol1_2.4-2 libslang2_2.3.0-2+b1 libsmartcols1_2.27.1-1 libss2_1.42.13-1 libstdc++-4.9-dev_4.9.3-10 libstdc++-5-dev_5.3.1-5+rpi1 libstdc++6_5.3.1-5+rpi1 libsystemd0_228-4 libtimedate-perl_2.3000-2 libtinfo5_6.0+20151024-2 libubsan0_5.3.1-5+rpi1 libudev1_228-4 libunistring0_0.9.3-5.2 libusb-0.1-4_2:0.1.12-28 libustr-1.0-1_1.0.4-5 libuuid1_2.27.1-1 libxml2_2.9.3+dfsg1-1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.2-3.1 lsb-base_4.1+Debian13+rpi1+nmu1 make_4.0-8.2 makedev_2.3.1-93 man-db_2.7.5-1 manpages_4.04-0.1 mawk_1.3.3-17 mount_2.27.1-1 multiarch-support_2.21-6 nano_2.4.3-1 ncurses-base_6.0+20151024-2 ncurses-bin_6.0+20151024-2 passwd_1:4.2-3.1 patch_2.7.5-1 perl_5.22.1-4 perl-base_5.22.1-4 perl-modules-5.22_5.22.1-4 po-debconf_1.0.19 procps_2:3.3.11-3 raspbian-archive-keyring_20120528.2 readline-common_6.3-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-miniasm-dummy_0.invalid.0 sed_4.2.2-6.1 sensible-utils_0.0.9 startpar_0.59-3 systemd_228-4 systemd-sysv_228-4 sysv-rc_2.88dsf-59.2 sysvinit-utils_2.88dsf-59.2 tar_1.28-2.1 tzdata_2015g-1 udev_228-4 util-linux_2.27.1-1 xz-utils_5.1.1alpha+20120614-2.1 zlib1g_1:1.2.8.dfsg-2+b1 zlib1g-dev_1:1.2.8.dfsg-2+b1
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
└──────────────────────────────────────────────────────────────────────────────┘
Unpack source
─────────────
gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Tue Jan 26 09:34:31 2016 UTC using RSA key ID F09F4872
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./miniasm_0.2+dfsg-1.dsc
dpkg-source: info: extracting miniasm in miniasm-0.2+dfsg
dpkg-source: info: unpacking miniasm_0.2+dfsg.orig.tar.gz
dpkg-source: info: unpacking miniasm_0.2+dfsg-1.debian.tar.xz
dpkg-source: info: applying ensure_64bit_value
dpkg-source: info: applying hardening
Check disc space
────────────────
Sufficient free space for build
User Environment
────────────────
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-4872d9bd-6f3e-47c7-b827-bff9ef04c711
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package miniasm
dpkg-buildpackage: source version 0.2+dfsg-1
dpkg-buildpackage: source distribution unstable
dpkg-source --before-build miniasm-0.2+dfsg
dpkg-buildpackage: host architecture armhf
fakeroot debian/rules clean
dh clean
dh_testdir
dh_auto_clean
make -j1 clean
make[1]: Entering directory '/«BUILDDIR»/miniasm-0.2+dfsg'
rm -fr gmon.out *.o a.out miniasm minidot *~ *.a *.dSYM session*
make[1]: Leaving directory '/«BUILDDIR»/miniasm-0.2+dfsg'
dh_clean
debian/rules build-arch
dh build-arch
dh_testdir -a
dh_update_autotools_config -a
dh_auto_configure -a
dh_auto_build -a
make -j1
make[1]: Entering directory '/«BUILDDIR»/miniasm-0.2+dfsg'
gcc -c -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat -Wno-unused-function -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I. sys.c -o sys.o
gcc -c -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat -Wno-unused-function -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I. sdict.c -o sdict.o
gcc -c -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat -Wno-unused-function -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I. paf.c -o paf.o
gcc -c -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat -Wno-unused-function -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I. asg.c -o asg.o
gcc -c -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat -Wno-unused-function -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I. common.c -o common.o
gcc -c -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat -Wno-unused-function -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I. hit.c -o hit.o
hit.c: In function 'ma_hit_read':
hit.c:64:39: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'size_t {aka unsigned int}' [-Wformat=]
if (ma_verbose >= 3) fprintf(stderr, "[M::%s::%s] read %ld hits; stored %ld hits and %d sequences (%ld bp)\n", __func__, sys_timestamp(), tot, h.n, d->n_seq, tot_len);
^
hit.c:64:39: warning: format '%ld' expects argument of type 'long int', but argument 6 has type 'size_t {aka unsigned int}' [-Wformat=]
hit.c:64:39: warning: format '%ld' expects argument of type 'long int', but argument 8 has type 'size_t {aka unsigned int}' [-Wformat=]
hit.c: In function 'ma_hit_sub':
hit.c:119:19: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'size_t {aka unsigned int}' [-Wformat=]
fprintf(stderr, "[M::%s::%s] %ld query sequences remain after sub\n", __func__, sys_timestamp(), n_remained);
^
hit.c: In function 'ma_hit_cut':
hit.c:152:19: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'size_t {aka unsigned int}' [-Wformat=]
fprintf(stderr, "[M::%s::%s] %ld hits remain after cut\n", __func__, sys_timestamp(), m);
^
hit.c: In function 'ma_hit_flt':
hit.c:175:19: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'size_t {aka unsigned int}' [-Wformat=]
fprintf(stderr, "[M::%s::%s] %ld hits remain after filtering; crude coverage after filtering: %.2f\n", __func__, sys_timestamp(), m, *cov);
^
hit.c: In function 'ma_hit_contained':
hit.c:215:19: warning: format '%ld' expects argument of type 'long int', but argument 6 has type 'size_t {aka unsigned int}' [-Wformat=]
fprintf(stderr, "[M::%s::%s] %d sequences and %ld hits remain after containment removal\n", __func__, sys_timestamp(), d->n_seq, m);
^
gcc -c -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat -Wno-unused-function -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I. asm.c -o asm.o
gcc -c -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat -Wno-unused-function -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I. main.c -o main.o
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat -Wno-unused-function sys.o sdict.o paf.o asg.o common.o hit.o asm.o main.o -o miniasm -lm -lz -lpthread -Wl,-z,relro
gcc -c -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat -Wno-unused-function -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I. dotter.c -o dotter.o
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat -Wno-unused-function paf.o sdict.o dotter.o -o minidot -lm -lz -lpthread -Wl,-z,relro
make[1]: Leaving directory '/«BUILDDIR»/miniasm-0.2+dfsg'
dh_auto_test -a
fakeroot debian/rules binary-arch
dh binary-arch
dh_testroot -a
dh_prep -a
dh_auto_install -a
dh_install -a
dh_installdocs -a
dh_installchangelogs -a
dh_installman -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/miniasm/usr/bin/miniasm was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/miniasm/usr/bin/miniasm was not linked against libpthread.so.0 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/miniasm/usr/bin/miniasm was not linked against libm.so.6 (it uses none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'miniasm-dbgsym' in '../miniasm-dbgsym_0.2+dfsg-1_armhf.deb'.
dpkg-deb: building package 'miniasm' in '../miniasm_0.2+dfsg-1_armhf.deb'.
dpkg-genchanges -B -mRaspbian wandboard test autobuilder <root@raspbian.org> >../miniasm_0.2+dfsg-1_armhf.changes
dpkg-genchanges: warning: package miniasm-dbgsym listed in files list but not in control info
dpkg-genchanges: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build miniasm-0.2+dfsg
dpkg-buildpackage: binary-only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
Build finished at 20160201-2312
Finished
────────
I: Built successfully
┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build Chroot │
└──────────────────────────────────────────────────────────────────────────────┘
┌──────────────────────────────────────────────────────────────────────────────┐
│ Changes │
└──────────────────────────────────────────────────────────────────────────────┘
miniasm_0.2+dfsg-1_armhf.changes:
─────────────────────────────────
Format: 1.8
Date: Tue, 26 Jan 2016 09:32:58 +0000
Source: miniasm
Binary: miniasm
Architecture: armhf
Version: 0.2+dfsg-1
Distribution: stretch-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Sascha Steinbiss <sascha@steinbiss.name>
Description:
miniasm - ultrafast de novo assembler for long noisy DNA sequencing reads
Changes:
miniasm (0.2+dfsg-1) unstable; urgency=medium
.
* Remove upstream manuscript draft from source.
* Add missing copyright holders.
Checksums-Sha1:
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dc547e807a6d4322f739fc912e18a359748c7ac2 26114 miniasm_0.2+dfsg-1_armhf.deb
Checksums-Sha256:
abdfb157195b8521351b7fdf897af1a5e45e78612847da83f7652fbdaec6612b 51218 miniasm-dbgsym_0.2+dfsg-1_armhf.deb
95ebd74b03707a9be89f44d02c55c7a42d9feeaf9b9f57783ff9cbbe790ed728 26114 miniasm_0.2+dfsg-1_armhf.deb
Files:
77eb674fbcffdd192ea9c17a8d0c07e1 51218 debug extra miniasm-dbgsym_0.2+dfsg-1_armhf.deb
a1ca796e6fc020704c47e26d329821de 26114 science optional miniasm_0.2+dfsg-1_armhf.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
miniasm-dbgsym_0.2+dfsg-1_armhf.deb
───────────────────────────────────
new debian package, version 2.0.
size 51218 bytes: control archive=486 bytes.
413 bytes, 13 lines control
106 bytes, 1 lines md5sums
Package: miniasm-dbgsym
Source: miniasm
Version: 0.2+dfsg-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 67
Depends: miniasm (= 0.2+dfsg-1)
Section: debug
Priority: extra
Homepage: https://github.com/lh3/miniasm
Description: Debug symbols for miniasm
Auto-Built-Package: debug-symbols
Build-Ids: 31a2b42be8c5a7bb3c83a118c270055290b2b618
drwxr-xr-x root/root 0 2016-02-01 23:12 ./
drwxr-xr-x root/root 0 2016-02-01 23:11 ./usr/
drwxr-xr-x root/root 0 2016-02-01 23:11 ./usr/lib/
drwxr-xr-x root/root 0 2016-02-01 23:11 ./usr/lib/debug/
drwxr-xr-x root/root 0 2016-02-01 23:11 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2016-02-01 23:11 ./usr/lib/debug/.build-id/31/
-rw-r--r-- root/root 57364 2016-02-01 23:11 ./usr/lib/debug/.build-id/31/a2b42be8c5a7bb3c83a118c270055290b2b618.debug
drwxr-xr-x root/root 0 2016-02-01 23:11 ./usr/share/
drwxr-xr-x root/root 0 2016-02-01 23:11 ./usr/share/doc/
lrwxrwxrwx root/root 0 2016-02-01 23:11 ./usr/share/doc/miniasm-dbgsym -> miniasm
miniasm_0.2+dfsg-1_armhf.deb
────────────────────────────
new debian package, version 2.0.
size 26114 bytes: control archive=822 bytes.
823 bytes, 17 lines control
258 bytes, 4 lines md5sums
Package: miniasm
Version: 0.2+dfsg-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 62
Depends: libc6 (>= 2.4), zlib1g (>= 1:1.1.4)
Recommends: minimap
Section: science
Priority: optional
Homepage: https://github.com/lh3/miniasm
Description: ultrafast de novo assembler for long noisy DNA sequencing reads
Miniasm is an experimental very fast OLC-based de novo assembler for noisy
long reads. It takes all-vs-all read self-mappings (typically by minimap)
as input and outputs an assembly graph in the GFA format. Different from
mainstream assemblers, miniasm does not have a consensus step. It simply
concatenates pieces of read sequences to generate the final unitig sequences.
Thus the per-base error rate is similar to the raw input reads.
drwxr-xr-x root/root 0 2016-02-01 23:11 ./
drwxr-xr-x root/root 0 2016-02-01 23:11 ./usr/
drwxr-xr-x root/root 0 2016-02-01 23:11 ./usr/bin/
-rwxr-xr-x root/root 46692 2016-02-01 23:11 ./usr/bin/miniasm
drwxr-xr-x root/root 0 2016-02-01 23:11 ./usr/share/
drwxr-xr-x root/root 0 2016-02-01 23:11 ./usr/share/doc/
drwxr-xr-x root/root 0 2016-02-01 23:11 ./usr/share/doc/miniasm/
-rw-r--r-- root/root 247 2016-01-26 09:33 ./usr/share/doc/miniasm/changelog.Debian.gz
-rw-r--r-- root/root 2327 2016-01-25 22:37 ./usr/share/doc/miniasm/copyright
drwxr-xr-x root/root 0 2016-02-01 23:11 ./usr/share/man/
drwxr-xr-x root/root 0 2016-02-01 23:11 ./usr/share/man/man1/
-rw-r--r-- root/root 2355 2016-02-01 23:11 ./usr/share/man/man1/miniasm.1.gz
┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
┌──────────────────────────────────────────────────────────────────────────────┐
│ Cleanup │
└──────────────────────────────────────────────────────────────────────────────┘
Purging /«BUILDDIR»
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary │
└──────────────────────────────────────────────────────────────────────────────┘
Build Architecture: armhf
Build-Space: 1368
Build-Time: 49
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 177
Job: miniasm_0.2+dfsg-1
Machine Architecture: armhf
Package: miniasm
Package-Time: 268
Source-Version: 0.2+dfsg-1
Space: 1368
Status: successful
Version: 0.2+dfsg-1
────────────────────────────────────────────────────────────────────────────────
Finished at 20160201-2312
Build needed 00:04:28, 1368k disc space