mash →
2.1+dfsg-2 →
armhf → 2019-02-12 05:13:50
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-03
+==============================================================================+
| mash 2.1+dfsg-2 (armhf) Tue, 12 Feb 2019 04:52:55 +0000 |
+==============================================================================+
Package: mash
Version: 2.1+dfsg-2
Source Version: 2.1+dfsg-2
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-8ae9dc2e-38ce-4e32-acb0-92cbad4a8ad4' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [11.4 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [13.1 MB]
Fetched 24.4 MB in 29s (831 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'mash' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/mash.git
Please use:
git clone https://salsa.debian.org/med-team/mash.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 5587 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main mash 2.1+dfsg-2 (dsc) [2180 B]
Get:2 http://172.17.0.1/private buster-staging/main mash 2.1+dfsg-2 (tar) [3426 kB]
Get:3 http://172.17.0.1/private buster-staging/main mash 2.1+dfsg-2 (diff) [2159 kB]
Fetched 5587 kB in 1s (7316 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/mash-FcXgNZ/mash-2.1+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/mash-FcXgNZ' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-QPLous/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-QPLous/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-QPLous/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-QPLous/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-QPLous/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-QPLous/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-QPLous/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-QPLous/apt_archive ./ Packages [433 B]
Fetched 2109 B in 1s (3032 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates dbus dbus-user-session e2fsprogs-l10n krb5-locales libexpat1
libgpg-error-l10n libgssapi-krb5-2 libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 libnss-systemd libpam-systemd libssl1.1 openssl systemd-sysv
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 59 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-QPLous/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 14072 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 12~), capnproto (>= 0.6.1), libcapnp-dev (>= 0.6.1), libgsl-dev, zlib1g-dev, python3-sphinx, libjs-mathjax, asciidoctor, libmurmurhash-dev
Filtered Build-Depends: debhelper (>= 12~), capnproto (>= 0.6.1), libcapnp-dev (>= 0.6.1), libgsl-dev, zlib1g-dev, python3-sphinx, libjs-mathjax, asciidoctor, libmurmurhash-dev
dpkg-deb: building package 'sbuild-build-depends-mash-dummy' in '/<<BUILDDIR>>/resolver-QPLous/apt_archive/sbuild-build-depends-mash-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-mash-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-QPLous/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-QPLous/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-QPLous/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-QPLous/apt_archive ./ Sources [559 B]
Get:5 copy:/<<BUILDDIR>>/resolver-QPLous/apt_archive ./ Packages [643 B]
Fetched 2535 B in 1s (3375 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install mash build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
dbus dbus-user-session e2fsprogs-l10n krb5-locales libgpg-error-l10n
libgssapi-krb5-2 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0
libnss-systemd libpam-systemd systemd-sysv
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
asciidoctor autoconf automake autopoint autotools-dev bsdmainutils capnproto
debhelper dh-autoreconf dh-strip-nondeterminism docutils-common dwz file
fonts-mathjax gettext gettext-base groff-base intltool-debian
libarchive-zip-perl libbsd0 libcapnp-0.7.0 libcapnp-dev libcroco3 libelf1
libfile-stripnondeterminism-perl libglib2.0-0 libgsl-dev libgsl23
libgslcblas0 libicu63 libjs-jquery libjs-mathjax libjs-sphinxdoc
libjs-underscore libmagic-mgc libmagic1 libmpdec2 libmurmurhash-dev
libmurmurhash1 libpipeline1 libpython3-stdlib libpython3.7-minimal
libpython3.7-stdlib libruby2.5 libsigsegv2 libtool libuchardet0 libxml2
libyaml-0-2 m4 man-db mime-support po-debconf python-babel-localedata
python3 python3-alabaster python3-babel python3-certifi python3-chardet
python3-distutils python3-docutils python3-idna python3-imagesize
python3-jinja2 python3-lib2to3 python3-markupsafe python3-minimal
python3-packaging python3-pkg-resources python3-pygments python3-pyparsing
python3-requests python3-roman python3-six python3-sphinx python3-tz
python3-urllib3 python3.7 python3.7-minimal rake ruby ruby-asciidoctor
ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert
ruby-test-unit ruby-xmlrpc ruby2.5 rubygems-integration sgml-base
sphinx-common xml-core zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff
gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html
fonts-mathjax-extras fonts-stix libjs-mathjax-doc libtool-doc gfortran
| fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
libmail-box-perl python3-doc python3-tk python3-venv docutils-doc
fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french
texlive-latex-base texlive-latex-recommended python-jinja2-doc
python3-setuptools python-pygments-doc ttf-bitstream-vera
python-pyparsing-doc python3-cryptography python3-openssl python3-socks
dvipng imagemagick-6.q16 latexmk python3-sphinx-rtd-theme python3-stemmer
sphinx-doc texlive-fonts-recommended texlive-generic-extra
texlive-latex-extra python3.7-venv python3.7-doc binfmt-support ri ruby-dev
bundler sgml-base-doc
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs javascript-common libltdl-dev libmail-sendmail-perl
libpaper-utils python3-pil zip fonts-lato
The following NEW packages will be installed:
asciidoctor autoconf automake autopoint autotools-dev bsdmainutils capnproto
debhelper dh-autoreconf dh-strip-nondeterminism docutils-common dwz file
fonts-mathjax gettext gettext-base groff-base intltool-debian
libarchive-zip-perl libbsd0 libcapnp-0.7.0 libcapnp-dev libcroco3 libelf1
libfile-stripnondeterminism-perl libglib2.0-0 libgsl-dev libgsl23
libgslcblas0 libicu63 libjs-jquery libjs-mathjax libjs-sphinxdoc
libjs-underscore libmagic-mgc libmagic1 libmpdec2 libmurmurhash-dev
libmurmurhash1 libpipeline1 libpython3-stdlib libpython3.7-minimal
libpython3.7-stdlib libruby2.5 libsigsegv2 libtool libuchardet0 libxml2
libyaml-0-2 m4 man-db mime-support po-debconf python-babel-localedata
python3 python3-alabaster python3-babel python3-certifi python3-chardet
python3-distutils python3-docutils python3-idna python3-imagesize
python3-jinja2 python3-lib2to3 python3-markupsafe python3-minimal
python3-packaging python3-pkg-resources python3-pygments python3-pyparsing
python3-requests python3-roman python3-six python3-sphinx python3-tz
python3-urllib3 python3.7 python3.7-minimal rake ruby ruby-asciidoctor
ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert
ruby-test-unit ruby-xmlrpc ruby2.5 rubygems-integration
sbuild-build-depends-mash-dummy sgml-base sphinx-common xml-core zlib1g-dev
0 upgraded, 95 newly installed, 0 to remove and 59 not upgraded.
Need to get 46.4 MB of archives.
After this operation, 215 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-QPLous/apt_archive ./ sbuild-build-depends-mash-dummy 0.invalid.0 [928 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.9.1-1 [104 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.4-2 [782 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.5.1-1 [26.6 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.8.5-1 [1231 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf libpython3.7-minimal armhf 3.7.2-2 [582 kB]
Get:9 http://172.17.0.1/private buster-staging/main armhf python3.7-minimal armhf 3.7.2-2 [1455 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf python3-minimal armhf 3.7.2-1 [36.6 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf mime-support all 3.61 [37.1 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf libmpdec2 armhf 2.4.2-2 [67.2 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf libpython3.7-stdlib armhf 3.7.2-2 [1662 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf python3.7 armhf 3.7.2-2 [323 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf libpython3-stdlib armhf 3.7.2-1 [20.0 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf python3 armhf 3.7.2-1 [61.5 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf sgml-base all 1.29 [14.8 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.35-2 [242 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf libmagic1 armhf 1:5.35-2 [109 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.35-2 [65.1 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-9 [117 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf rubygems-integration all 1.11 [4994 B]
Get:23 http://172.17.0.1/private buster-staging/main armhf rake all 12.3.1-3 [66.9 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf ruby-did-you-mean all 1.2.1-1 [14.4 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf ruby-minitest all 5.11.3-1 [54.8 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf ruby-net-telnet all 0.1.1-2 [12.5 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf ruby-power-assert all 1.1.1-1 [10.9 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf ruby-test-unit all 3.2.8-1 [72.4 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf ruby-xmlrpc all 0.3.0-2 [23.7 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf libyaml-0-2 armhf 0.2.1-1 [38.8 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf libruby2.5 armhf 2.5.3-3 [3143 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf ruby2.5 armhf 2.5.3-3 [393 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf ruby armhf 1:2.5.1+b1 [11.6 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf ruby-asciidoctor all 1.5.8-1 [188 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf asciidoctor all 1.5.8-1 [75.8 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-2 [185 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-9 [434 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf libcapnp-0.7.0 armhf 0.7.0-3 [864 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf capnproto armhf 0.7.0-3 [193 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-9 [547 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB]
Get:47 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 1.1.0-1 [19.5 kB]
Get:48 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 1.1.0-1 [12.6 kB]
Get:49 http://172.17.0.1/private buster-staging/main armhf libelf1 armhf 0.175-2 [157 kB]
Get:50 http://172.17.0.1/private buster-staging/main armhf dwz armhf 0.12-3 [66.0 kB]
Get:51 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.58.3-1 [1077 kB]
Get:52 http://172.17.0.1/private buster-staging/main armhf libicu63 armhf 63.1-6 [7973 kB]
Get:53 http://172.17.0.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-7+b1 [570 kB]
Get:54 http://172.17.0.1/private buster-staging/main armhf libcroco3 armhf 0.6.12-3 [132 kB]
Get:55 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-9 [1219 kB]
Get:56 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:57 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:58 http://172.17.0.1/private buster-staging/main armhf debhelper all 12 [1002 kB]
Get:59 http://172.17.0.1/private buster-staging/main armhf xml-core all 0.18 [23.4 kB]
Get:60 http://172.17.0.1/private buster-staging/main armhf docutils-common all 0.14+dfsg-3 [204 kB]
Get:61 http://172.17.0.1/private buster-staging/main armhf fonts-mathjax all 2.7.4+dfsg-1 [2209 kB]
Get:62 http://172.17.0.1/private buster-staging/main armhf libcapnp-dev armhf 0.7.0-3 [1337 kB]
Get:63 http://172.17.0.1/private buster-staging/main armhf libgslcblas0 armhf 2.5+dfsg-6 [79.0 kB]
Get:64 http://172.17.0.1/private buster-staging/main armhf libgsl23 armhf 2.5+dfsg-6 [704 kB]
Get:65 http://172.17.0.1/private buster-staging/main armhf libgsl-dev armhf 2.5+dfsg-6 [893 kB]
Get:66 http://172.17.0.1/private buster-staging/main armhf libjs-jquery all 3.3.1~dfsg-1 [332 kB]
Get:67 http://172.17.0.1/private buster-staging/main armhf libjs-mathjax all 2.7.4+dfsg-1 [5658 kB]
Get:68 http://172.17.0.1/private buster-staging/main armhf libjs-underscore all 1.8.3~dfsg-2 [91.4 kB]
Get:69 http://172.17.0.1/private buster-staging/main armhf libjs-sphinxdoc all 1.8.3-2 [95.4 kB]
Get:70 http://172.17.0.1/private buster-staging/main armhf libmurmurhash1 armhf 1.2-2 [5552 B]
Get:71 http://172.17.0.1/private buster-staging/main armhf libmurmurhash-dev armhf 1.2-2 [9604 B]
Get:72 http://172.17.0.1/private buster-staging/main armhf python-babel-localedata all 2.6.0+dfsg.1-1 [4083 kB]
Get:73 http://172.17.0.1/private buster-staging/main armhf python3-pkg-resources all 40.7.1-1 [152 kB]
Get:74 http://172.17.0.1/private buster-staging/main armhf python3-tz all 2018.9-1 [27.0 kB]
Get:75 http://172.17.0.1/private buster-staging/main armhf python3-babel all 2.6.0+dfsg.1-1 [96.7 kB]
Get:76 http://172.17.0.1/private buster-staging/main armhf python3-certifi all 2018.8.24-1 [140 kB]
Get:77 http://172.17.0.1/private buster-staging/main armhf python3-chardet all 3.0.4-3 [80.5 kB]
Get:78 http://172.17.0.1/private buster-staging/main armhf python3-lib2to3 all 3.7.2-3 [76.7 kB]
Get:79 http://172.17.0.1/private buster-staging/main armhf python3-distutils all 3.7.2-3 [142 kB]
Get:80 http://172.17.0.1/private buster-staging/main armhf python3-roman all 2.0.0-3 [8768 B]
Get:81 http://172.17.0.1/private buster-staging/main armhf python3-docutils all 0.14+dfsg-3 [377 kB]
Get:82 http://172.17.0.1/private buster-staging/main armhf python3-idna all 2.6-1 [34.3 kB]
Get:83 http://172.17.0.1/private buster-staging/main armhf python3-imagesize all 1.0.0-1 [4960 B]
Get:84 http://172.17.0.1/private buster-staging/main armhf python3-markupsafe armhf 1.1.0-1 [14.4 kB]
Get:85 http://172.17.0.1/private buster-staging/main armhf python3-jinja2 all 2.10-1 [106 kB]
Get:86 http://172.17.0.1/private buster-staging/main armhf python3-pyparsing all 2.2.0+dfsg1-2 [89.6 kB]
Get:87 http://172.17.0.1/private buster-staging/main armhf python3-six all 1.12.0-1 [15.7 kB]
Get:88 http://172.17.0.1/private buster-staging/main armhf python3-packaging all 19.0-1 [20.5 kB]
Get:89 http://172.17.0.1/private buster-staging/main armhf python3-pygments all 2.3.1+dfsg-1 [594 kB]
Get:90 http://172.17.0.1/private buster-staging/main armhf python3-urllib3 all 1.24-1 [96.8 kB]
Get:91 http://172.17.0.1/private buster-staging/main armhf python3-requests all 2.20.0-2 [66.7 kB]
Get:92 http://172.17.0.1/private buster-staging/main armhf sphinx-common all 1.8.3-2 [499 kB]
Get:93 http://172.17.0.1/private buster-staging/main armhf python3-alabaster all 0.7.8-1 [18.4 kB]
Get:94 http://172.17.0.1/private buster-staging/main armhf python3-sphinx all 1.8.3-2 [480 kB]
Get:95 http://172.17.0.1/private buster-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [206 kB]
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Setting up python3-requests (2.20.0-2) ...
Processing triggers for sgml-base (1.29) ...
Setting up docutils-common (0.14+dfsg-3) ...
Processing triggers for sgml-base (1.29) ...
Setting up python3-docutils (0.14+dfsg-3) ...
update-alternatives: using /usr/share/docutils/scripts/python3/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2html4 to provide /usr/bin/rst2html4 (rst2html4) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2html5 to provide /usr/bin/rst2html5 (rst2html5) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode
Setting up python3-sphinx (1.8.3-2) ...
update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-apidoc to provide /usr/bin/sphinx-apidoc (sphinx-apidoc) in auto mode
update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-autogen to provide /usr/bin/sphinx-autogen (sphinx-autogen) in auto mode
update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-build to provide /usr/bin/sphinx-build (sphinx-build) in auto mode
update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-quickstart to provide /usr/bin/sphinx-quickstart (sphinx-quickstart) in auto mode
Setting up rake (12.3.1-3) ...
Setting up libruby2.5:armhf (2.5.3-3) ...
Setting up dh-autoreconf (19) ...
Setting up debhelper (12) ...
Setting up ruby2.5 (2.5.3-3) ...
Setting up dh-strip-nondeterminism (1.1.0-1) ...
Setting up ruby (1:2.5.1+b1) ...
Setting up ruby-asciidoctor (1.5.8-1) ...
Setting up asciidoctor (1.5.8-1) ...
Setting up sbuild-build-depends-mash-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.28-5+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.2-armmp armhf (armv7l)
Toolchain package versions: binutils_2.31.1-11+rpi1 dpkg-dev_1.19.2 g++-8_8.2.0-14+rpi1 gcc-8_8.2.0-14+rpi1 libc6-dev_2.28-5+rpi1 libstdc++-8-dev_8.2.0-14+rpi1 libstdc++6_8.2.0-14+rpi1 linux-libc-dev_4.18.20-2+rpi1
Package versions: adduser_3.118 apt_1.8.0~beta1 asciidoctor_1.5.8-1 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1+rpi1 base-passwd_3.5.45 bash_5.0-2 binutils_2.31.1-11+rpi1 binutils-arm-linux-gnueabihf_2.31.1-11+rpi1 binutils-common_2.31.1-11+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.33.1-0.1 build-essential_12.5 bzip2_1.0.6-9 ca-certificates_20170717 capnproto_0.7.0-3 coreutils_8.30-1 cpio_2.12+dfsg-6 cpp_4:8.2.0-2+rpi1 cpp-8_8.2.0-14+rpi1 dash_0.5.10.2-5 dbus_1.12.12-1 dbus-user-session_1.12.12-1 debconf_1.5.70 debhelper_12 debianutils_4.8.6.1 dh-autoreconf_19 dh-strip-nondeterminism_1.1.0-1 diffutils_1:3.6-1 dirmngr_2.2.12-1+rpi1 dmsetup_2:1.02.155-1 docutils-common_0.14+dfsg-3 dpkg_1.19.2 dpkg-dev_1.19.2 dwz_0.12-3 e2fslibs_1.44.5-1 e2fsprogs_1.44.5-1 e2fsprogs-l10n_1.44.5-1 fakeroot_1.23-1 fdisk_2.33.1-0.1 file_1:5.35-2 findutils_4.6.0+git+20190105-2 fonts-mathjax_2.7.4+dfsg-1 g++_4:8.2.0-2+rpi1 g++-8_8.2.0-14+rpi1 gcc_4:8.2.0-2+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.4-2+rpi1+b19 gcc-5-base_5.5.0-8 gcc-6-base_6.5.0-1+rpi1 gcc-8_8.2.0-14+rpi1 gcc-8-base_8.2.0-14+rpi1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gnupg_2.2.12-1+rpi1 gnupg-l10n_2.2.12-1+rpi1 gnupg-utils_2.2.12-1+rpi1 gpg_2.2.12-1+rpi1 gpg-agent_2.2.12-1+rpi1 gpg-wks-client_2.2.12-1+rpi1 gpg-wks-server_2.2.12-1+rpi1 gpgconf_2.2.12-1+rpi1 gpgsm_2.2.12-1+rpi1 gpgv_2.2.12-1+rpi1 grep_3.3-1 groff-base_1.22.4-2 gzip_1.9-3 hostname_3.21 inetutils-ping_2:1.9.4-5 init-system-helpers_1.56+nmu1 initramfs-tools_0.132 initramfs-tools-core_0.132 intltool-debian_0.35.0+20060710.5 klibc-utils_2.0.4-15+rpi1 kmod_25-2 krb5-locales_1.17-1 libacl1_2.2.52-3 libapparmor1_2.13.2-3 libapt-pkg5.0_1.8.0~beta1 libarchive-zip-perl_1.64-1 libargon2-1_0~20171227-0.1 libasan5_8.2.0-14+rpi1 libassuan0_2.5.2-1 libatomic1_8.2.0-14+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.8.4-2 libaudit1_1:2.8.4-2+b1 libbinutils_2.31.1-11+rpi1 libblkid1_2.33.1-0.1 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-9 libc-bin_2.28-5+rpi1 libc-dev-bin_2.28-5+rpi1 libc6_2.28-5+rpi1 libc6-dev_2.28-5+rpi1 libcap-ng0_0.7.9-2 libcap2_1:2.25-1.2 libcapnp-0.7.0_0.7.0-3 libcapnp-dev_0.7.0-3 libcc1-0_8.2.0-14+rpi1 libcom-err2_1.44.5-1 libcroco3_0.6.12-3 libcryptsetup12_2:2.0.6-1 libcryptsetup4_2:1.7.5-1 libdb5.3_5.3.28+dfsg1-0.2 libdbus-1-3_1.12.12-1 libdebconfclient0_0.246 libdevmapper1.02.1_2:1.02.155-1 libdpkg-perl_1.19.2 libdrm-common_2.4.95-1+rpi1 libdrm2_2.4.95-1+rpi1 libelf1_0.175-2 libexpat1_2.2.6-1 libext2fs2_1.44.5-1 libfakeroot_1.23-1 libfdisk1_2.33.1-0.1 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.1.0-1 libgcc-8-dev_8.2.0-14+rpi1 libgcc1_1:8.2.0-14+rpi1 libgcrypt20_1.8.4-4 libgdbm-compat4_1.18.1-2 libgdbm3_1.8.3-14 libgdbm6_1.18.1-2 libglib2.0-0_2.58.3-1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.5-2+rpi1 libgomp1_8.2.0-14+rpi1 libgpg-error-l10n_1.33-3 libgpg-error0_1.33-3 libgsl-dev_2.5+dfsg-6 libgsl23_2.5+dfsg-6 libgslcblas0_2.5+dfsg-6 libgssapi-krb5-2_1.17-1 libhogweed4_3.4.1~rc1-1 libicu63_63.1-6 libidn11_1.33-2.2 libidn2-0_2.0.5-1 libip4tc0_1.8.2-3 libisl19_0.20-2 libjs-jquery_3.3.1~dfsg-1 libjs-mathjax_2.7.4+dfsg-1 libjs-sphinxdoc_1.8.3-2 libjs-underscore_1.8.3~dfsg-2 libjson-c3_0.12.1-1.3 libk5crypto3_1.17-1 libkeyutils1_1.5.9-9.3 libklibc_2.0.4-15+rpi1 libkmod2_25-2 libkrb5-3_1.17-1 libkrb5support0_1.17-1 libksba8_1.3.5-2 libldap-2.4-2_2.4.47+dfsg-2 libldap-common_2.4.47+dfsg-2 liblz4-1_1.8.3-1 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.35-2 libmagic1_1:5.35-2 libmount1_2.33.1-0.1 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.2~rc1-1 libmurmurhash-dev_1.2-2 libmurmurhash1_1.2-2 libncurses5_6.1+20181013-1 libncurses6_6.1+20181013-1 libncursesw5_6.1+20181013-1 libncursesw6_6.1+20181013-1 libnettle6_3.4.1~rc1-1 libnpth0_1.6-1 libnss-systemd_240-4+rpi1 libp11-kit0_0.23.14-2 libpam-modules_1.1.8-4 libpam-modules-bin_1.1.8-4 libpam-runtime_1.1.8-4 libpam-systemd_240-4+rpi1 libpam0g_1.1.8-4 libpcre3_2:8.39-11+rpi1 libperl5.28_5.28.1-3 libpipeline1_1.5.1-1 libplymouth4_0.9.4-1 libpng16-16_1.6.36-2 libprocps7_2:3.3.15-2 libpython3-stdlib_3.7.2-1 libpython3.7-minimal_3.7.2-2 libpython3.7-stdlib_3.7.2-2 libreadline7_7.0-5 libruby2.5_2.5.3-3 libsasl2-2_2.1.27+dfsg-1 libsasl2-modules-db_2.1.27+dfsg-1 libseccomp2_2.3.3-3+b1 libselinux1_2.8-1+b1 libsemanage-common_2.8-2 libsemanage1_2.8-2 libsepol1_2.8-1 libsigsegv2_2.12-2 libsmartcols1_2.33.1-0.1 libsqlite3-0_3.26.0+fossilbc891ac6b-1 libss2_1.44.5-1 libssl1.1_1.1.1a-1 libstdc++-8-dev_8.2.0-14+rpi1 libstdc++6_8.2.0-14+rpi1 libsystemd0_240-4+rpi1 libtasn1-6_4.13-3 libtinfo5_6.1+20181013-1 libtinfo6_6.1+20181013-1 libtool_2.4.6-9 libubsan1_8.2.0-14+rpi1 libuchardet0_0.0.6-3 libudev1_240-4+rpi1 libunistring2_0.9.10-1 libuuid1_2.33.1-0.1 libxml2_2.9.4+dfsg1-7+b1 libyaml-0-2_0.2.1-1 libzstd1_1.3.8+dfsg-3+rpi1 linux-base_4.5 linux-libc-dev_4.18.20-2+rpi1 login_1:4.5-1.1 lsb-base_10.2018112800+rpi1 m4_1.4.18-2 make_4.2.1-1.2 makedev_2.3.1-94 man-db_2.8.5-1 mawk_1.3.3-17 mime-support_3.61 mount_2.33.1-0.1 multiarch-support_2.28-5+rpi1 nano_3.2-1 ncurses-base_6.1+20181013-1 ncurses-bin_6.1+20181013-1 netbase_5.5 openssl_1.1.1a-1 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.28.1-3 perl-base_5.28.1-3 perl-modules-5.28_5.28.1-3 pinentry-curses_1.1.0-1 plymouth_0.9.4-1 po-debconf_1.0.21 procps_2:3.3.15-2 python-babel-localedata_2.6.0+dfsg.1-1 python3_3.7.2-1 python3-alabaster_0.7.8-1 python3-babel_2.6.0+dfsg.1-1 python3-certifi_2018.8.24-1 python3-chardet_3.0.4-3 python3-distutils_3.7.2-3 python3-docutils_0.14+dfsg-3 python3-idna_2.6-1 python3-imagesize_1.0.0-1 python3-jinja2_2.10-1 python3-lib2to3_3.7.2-3 python3-markupsafe_1.1.0-1 python3-minimal_3.7.2-1 python3-packaging_19.0-1 python3-pkg-resources_40.7.1-1 python3-pygments_2.3.1+dfsg-1 python3-pyparsing_2.2.0+dfsg1-2 python3-requests_2.20.0-2 python3-roman_2.0.0-3 python3-six_1.12.0-1 python3-sphinx_1.8.3-2 python3-tz_2018.9-1 python3-urllib3_1.24-1 python3.7_3.7.2-2 python3.7-minimal_3.7.2-2 rake_12.3.1-3 raspbian-archive-keyring_20120528.2 readline-common_7.0-5 ruby_1:2.5.1+b1 ruby-asciidoctor_1.5.8-1 ruby-did-you-mean_1.2.1-1 ruby-minitest_5.11.3-1 ruby-net-telnet_0.1.1-2 ruby-power-assert_1.1.1-1 ruby-test-unit_3.2.8-1 ruby-xmlrpc_0.3.0-2 ruby2.5_2.5.3-3 rubygems-integration_1.11 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-mash-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sgml-base_1.29 sphinx-common_1.8.3-2 systemd_240-4+rpi1 systemd-sysv_240-4+rpi1 sysvinit-utils_2.93-5 tar_1.30+dfsg-4 tzdata_2018i-1 udev_240-4+rpi1 util-linux_2.33.1-0.1 xml-core_0.18 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Thu Feb 7 15:02:33 2019 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./mash_2.1+dfsg-2.dsc
dpkg-source: info: extracting mash in /<<BUILDDIR>>/mash-2.1+dfsg
dpkg-source: info: unpacking mash_2.1+dfsg.orig.tar.xz
dpkg-source: info: unpacking mash_2.1+dfsg-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying hardening.patch
dpkg-source: info: applying use_debian_mathjax.patch
dpkg-source: info: applying drop_memcpy_wrapper.patch
dpkg-source: info: applying link_dynamically_against_capnp.patch
dpkg-source: info: applying parallel.patch
dpkg-source: info: applying capnp0_7.patch
dpkg-source: info: applying use_debian_packaged_libmurmurhash.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-8ae9dc2e-38ce-4e32-acb0-92cbad4a8ad4
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package mash
dpkg-buildpackage: info: source version 2.1+dfsg-2
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --with sphinxdoc
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<BUILDDIR>>/mash-2.1+dfsg'
dh_auto_clean
rm -rf /<<BUILDDIR>>/mash-2.1+dfsg/debian/sphinxdoc /<<BUILDDIR>>/mash-2.1+dfsg/debian/man
make[1]: Leaving directory '/<<BUILDDIR>>/mash-2.1+dfsg'
dh_clean
debian/rules build-arch
dh build-arch --with sphinxdoc
dh_update_autotools_config -a
dh_autoreconf -a
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<BUILDDIR>>/mash-2.1+dfsg'
dh_auto_configure -- --with-capnp=/usr --with-gsl=/usr --prefix=/<<BUILDDIR>>/mash-2.1+dfsg/debian/tmp/usr
./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --with-capnp=/usr --with-gsl=/usr --prefix=/<<BUILDDIR>>/mash-2.1\+dfsg/debian/tmp/usr
configure: WARNING: unrecognized options: --disable-silent-rules, --disable-maintainer-mode, --disable-dependency-tracking
checking for g++... g++
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking how to run the C++ preprocessor... g++ -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking zlib.h usability... yes
checking zlib.h presence... yes
checking for zlib.h... yes
checking for capnp... yes
checking capnp/common.h usability... yes
checking capnp/common.h presence... yes
checking for capnp/common.h... yes
checking gsl/gsl_cdf.h usability... yes
checking gsl/gsl_cdf.h presence... yes
checking for gsl/gsl_cdf.h... yes
configure: creating ./config.status
config.status: creating Makefile
configure: WARNING: unrecognized options: --disable-silent-rules, --disable-maintainer-mode, --disable-dependency-tracking
make[1]: Leaving directory '/<<BUILDDIR>>/mash-2.1+dfsg'
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<BUILDDIR>>/mash-2.1+dfsg'
dh_auto_build
make -j4
make[2]: Entering directory '/<<BUILDDIR>>/mash-2.1+dfsg'
cd src/mash/capnp;export PATH=/usr/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games;capnp compile -I /usr/include -oc++ MinHash.capnp
g++ -c -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mash-2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DARCH_32 -o src/mash/Command.o src/mash/Command.cpp
g++ -c -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mash-2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DARCH_32 -o src/mash/CommandBounds.o src/mash/CommandBounds.cpp
g++ -c -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mash-2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DARCH_32 -o src/mash/CommandContain.o src/mash/CommandContain.cpp
g++ -c -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mash-2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DARCH_32 -o src/mash/CommandDistance.o src/mash/CommandDistance.cpp
g++ -c -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mash-2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DARCH_32 -o src/mash/CommandScreen.o src/mash/CommandScreen.cpp
g++ -c -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mash-2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DARCH_32 -o src/mash/CommandTriangle.o src/mash/CommandTriangle.cpp
g++ -c -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mash-2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DARCH_32 -o src/mash/CommandFind.o src/mash/CommandFind.cpp
In file included from /usr/include/c++/8/queue:62,
from src/mash/HashPriorityQueue.h:11,
from src/mash/MinHashHeap.h:5,
from src/mash/Sketch.h:17,
from src/mash/CommandScreen.h:11,
from src/mash/CommandScreen.cpp:7:
/usr/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from src/mash/bloom_filter.hpp:23,
from src/mash/MinHashHeap.h:8,
from src/mash/Sketch.h:17,
from src/mash/CommandScreen.h:11,
from src/mash/CommandScreen.cpp:7:
/usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from src/mash/Command.h:12,
from src/mash/CommandScreen.h:10,
from src/mash/CommandScreen.cpp:7:
/usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’:
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector<long long unsigned int>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function ‘virtual int mash::CommandScreen::run() const’:
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from src/mash/bloom_filter.hpp:23,
from src/mash/MinHashHeap.h:8,
from src/mash/Sketch.h:17,
from src/mash/CommandScreen.h:11,
from src/mash/CommandScreen.cpp:7:
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
g++ -c -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mash-2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DARCH_32 -o src/mash/CommandInfo.o src/mash/CommandInfo.cpp
g++ -c -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mash-2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DARCH_32 -o src/mash/CommandPaste.o src/mash/CommandPaste.cpp
g++ -c -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mash-2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DARCH_32 -o src/mash/CommandSketch.o src/mash/CommandSketch.cpp
g++ -c -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mash-2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DARCH_32 -o src/mash/CommandList.o src/mash/CommandList.cpp
g++ -c -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mash-2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DARCH_32 -o src/mash/hash.o src/mash/hash.cpp
src/mash/hash.cpp: In function ‘hash_u getHash(const char*, int, uint32_t, bool)’:
src/mash/hash.cpp:16:66: warning: ‘void MurmurHash3_x86_32(const void*, int, uint32_t, void*)’ is deprecated [-Wdeprecated-declarations]
MurmurHash3_x86_32(seq, length > 16 ? 16 : length, seed, data);
^
In file included from src/mash/hash.cpp:8:
/usr/include/murmurhash.h:32:1: note: declared here
MurmurHash3_x86_32(const void *data, int len, uint32_t seed, void *out);
^~~~~~~~~~~~~~~~~~
src/mash/hash.cpp:16:66: warning: ‘void MurmurHash3_x86_32(const void*, int, uint32_t, void*)’ is deprecated [-Wdeprecated-declarations]
MurmurHash3_x86_32(seq, length > 16 ? 16 : length, seed, data);
^
In file included from src/mash/hash.cpp:8:
/usr/include/murmurhash.h:32:1: note: declared here
MurmurHash3_x86_32(const void *data, int len, uint32_t seed, void *out);
^~~~~~~~~~~~~~~~~~
src/mash/hash.cpp:19:65: warning: ‘void MurmurHash3_x86_32(const void*, int, uint32_t, void*)’ is deprecated [-Wdeprecated-declarations]
MurmurHash3_x86_32(seq + 16, length - 16, seed, data + 4);
^
In file included from src/mash/hash.cpp:8:
/usr/include/murmurhash.h:32:1: note: declared here
MurmurHash3_x86_32(const void *data, int len, uint32_t seed, void *out);
^~~~~~~~~~~~~~~~~~
src/mash/hash.cpp:19:65: warning: ‘void MurmurHash3_x86_32(const void*, int, uint32_t, void*)’ is deprecated [-Wdeprecated-declarations]
MurmurHash3_x86_32(seq + 16, length - 16, seed, data + 4);
^
In file included from src/mash/hash.cpp:8:
/usr/include/murmurhash.h:32:1: note: declared here
MurmurHash3_x86_32(const void *data, int len, uint32_t seed, void *out);
^~~~~~~~~~~~~~~~~~
g++ -c -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mash-2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DARCH_32 -o src/mash/HashList.o src/mash/HashList.cpp
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from src/mash/HashList.cpp:8:
/usr/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from src/mash/HashList.cpp:8:
/usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In member function ‘void HashList::sort()’:
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
g++ -c -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mash-2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DARCH_32 -o src/mash/HashPriorityQueue.o src/mash/HashPriorityQueue.cpp
g++ -c -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mash-2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DARCH_32 -o src/mash/HashSet.o src/mash/HashSet.cpp
g++ -c -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mash-2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DARCH_32 -o src/mash/MinHashHeap.o src/mash/MinHashHeap.cpp
g++ -c -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mash-2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DARCH_32 -o src/mash/mash.o src/mash/mash.cpp
g++ -c -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mash-2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DARCH_32 -o src/mash/Sketch.o src/mash/Sketch.cpp
In file included from /usr/include/c++/8/vector:69,
from src/mash/HashList.h:11,
from src/mash/HashSet.h:10,
from src/mash/HashSet.cpp:7:
/usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’:
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector<long long unsigned int>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from src/mash/HashList.h:11,
from src/mash/HashSet.h:10,
from src/mash/HashSet.cpp:7:
/usr/include/c++/8/bits/stl_vector.h: In member function ‘void HashSet::toHashList(HashList&) const’:
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
src/mash/HashSet.cpp:111:1: note: parameter passing for argument of type ‘std::vector<long long unsigned int>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’} changed in GCC 7.1
}
^
g++ -c -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mash-2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DARCH_32 -o src/mash/sketchParameterSetup.o src/mash/sketchParameterSetup.cpp
In file included from /usr/include/c++/8/vector:69,
from src/mash/HashList.h:11,
from src/mash/MinHashHeap.h:4,
from src/mash/MinHashHeap.cpp:2:
/usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’:
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector<long long unsigned int>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from src/mash/HashList.h:11,
from src/mash/MinHashHeap.h:4,
from src/mash/MinHashHeap.cpp:2:
/usr/include/c++/8/bits/stl_vector.h: In member function ‘void MinHashHeap::tryInsert(hash_u)’:
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
g++ -c -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mash-2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DARCH_32 -o src/mash/capnp/MinHash.capnp.o src/mash/capnp/MinHash.capnp.c++
In file included from /usr/include/c++/8/vector:69,
from src/mash/Sketch.h:14,
from src/mash/Sketch.cpp:7:
/usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Sketch::PositionHash}; _Tp = Sketch::PositionHash; _Alloc = std::allocator<Sketch::PositionHash>]’:
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector<Sketch::PositionHash>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<Sketch::PositionHash*, std::vector<Sketch::PositionHash> >’} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In function ‘Sketch::SketchOutput* loadCapnp(Sketch::SketchInput*)’:
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Sketch::PositionHash*, std::vector<Sketch::PositionHash> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In function ‘void getMinHashPositions(std::vector<Sketch::PositionHash>&, char*, uint32_t, const Sketch::Parameters&, int)’:
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Sketch::PositionHash*, std::vector<Sketch::PositionHash> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Sketch::PositionHash*, std::vector<Sketch::PositionHash> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mash-2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DARCH_32 -o mash src/mash/Command.o src/mash/CommandBounds.o src/mash/CommandContain.o src/mash/CommandDistance.o src/mash/CommandScreen.o src/mash/CommandTriangle.o src/mash/CommandFind.o src/mash/CommandInfo.o src/mash/CommandPaste.o src/mash/CommandSketch.o src/mash/CommandList.o src/mash/hash.o src/mash/HashList.o src/mash/HashPriorityQueue.o src/mash/HashSet.o src/mash/MinHashHeap.o src/mash/mash.o src/mash/Sketch.o src/mash/sketchParameterSetup.o src/mash/capnp/MinHash.capnp.o -lkj -lcapnp -L/usr/lib -lgsl -lgslcblas -lstdc++ -lz -lm -lpthread -lmurmurhash -Wl,-z,relro -Wl,-z,now
ar -cr libmash.a src/mash/Command.o src/mash/CommandBounds.o src/mash/CommandContain.o src/mash/CommandDistance.o src/mash/CommandScreen.o src/mash/CommandTriangle.o src/mash/CommandFind.o src/mash/CommandInfo.o src/mash/CommandPaste.o src/mash/CommandSketch.o src/mash/CommandList.o src/mash/hash.o src/mash/HashList.o src/mash/HashPriorityQueue.o src/mash/HashSet.o src/mash/MinHashHeap.o src/mash/mash.o src/mash/Sketch.o src/mash/sketchParameterSetup.o src/mash/capnp/MinHash.capnp.o
ranlib libmash.a
make[2]: Leaving directory '/<<BUILDDIR>>/mash-2.1+dfsg'
sphinx-build doc/sphinx /<<BUILDDIR>>/mash-2.1+dfsg/debian/sphinxdoc
Running Sphinx v1.8.3
making output directory...
building [mo]: targets for 0 po files that are out of date
building [html]: targets for 5 source files that are out of date
updating environment: 5 added, 0 changed, 0 removed
reading sources... [ 20%] data
reading sources... [ 40%] distances
reading sources... [ 60%] index
reading sources... [ 80%] sketches
reading sources... [100%] tutorials
/<<BUILDDIR>>/mash-2.1+dfsg/doc/sphinx/tutorials.rst:9: WARNING: Unknown directive type "download".
.. download::
/<<BUILDDIR>>/mash-2.1+dfsg/doc/sphinx/tutorials.rst:10: WARNING: Explicit markup ends without a blank line; unexpected unindent.
/<<BUILDDIR>>/mash-2.1+dfsg/doc/sphinx/tutorials.rst:66: WARNING: Unknown directive type "download".
.. download::
/<<BUILDDIR>>/mash-2.1+dfsg/doc/sphinx/tutorials.rst:72: WARNING: Unknown directive type "download".
.. download::
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [ 20%] data
writing output... [ 40%] distances
writing output... [ 60%] index
writing output... [ 80%] sketches
writing output... [100%] tutorials
generating indices... genindex
writing additional pages... search
copying images... [100%] logo_med.png
copying static files... WARNING: html_static_path entry '/<<BUILDDIR>>/mash-2.1+dfsg/doc/sphinx/_static' does not exist
done
copying extra files... done
dumping search index in English (code: en) ... done
dumping object inventory... done
build succeeded, 5 warnings.
The HTML pages are in debian/sphinxdoc.
make[1]: Leaving directory '/<<BUILDDIR>>/mash-2.1+dfsg'
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<BUILDDIR>>/mash-2.1+dfsg'
echo "Do not test for 32 bit archs since test results were calculated for 64 bit."
Do not test for 32 bit archs since test results were calculated for 64 bit.
make[1]: Leaving directory '/<<BUILDDIR>>/mash-2.1+dfsg'
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch --with sphinxdoc
dh_testroot -a
dh_prep -a
dh_auto_install -a
make -j4 install DESTDIR=/<<BUILDDIR>>/mash-2.1\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no
make[1]: Entering directory '/<<BUILDDIR>>/mash-2.1+dfsg'
mkdir -p /<<BUILDDIR>>/mash-2.1+dfsg/debian/tmp/usr/bin/
mkdir -p /<<BUILDDIR>>/mash-2.1+dfsg/debian/tmp/usr/lib/
mkdir -p /<<BUILDDIR>>/mash-2.1+dfsg/debian/tmp/usr/include/
mkdir -p /<<BUILDDIR>>/mash-2.1+dfsg/debian/tmp/usr/include/mash
mkdir -p /<<BUILDDIR>>/mash-2.1+dfsg/debian/tmp/usr/include/mash/capnp
cp `pwd`/mash /<<BUILDDIR>>/mash-2.1+dfsg/debian/tmp/usr/bin/
cp `pwd`/libmash.a /<<BUILDDIR>>/mash-2.1+dfsg/debian/tmp/usr/lib/
cp `pwd`/src/mash/*.h /<<BUILDDIR>>/mash-2.1+dfsg/debian/tmp/usr/include/mash/
cp `pwd`/src/mash/capnp/MinHash.capnp.h /<<BUILDDIR>>/mash-2.1+dfsg/debian/tmp/usr/include/mash/capnp/
make[1]: Leaving directory '/<<BUILDDIR>>/mash-2.1+dfsg'
dh_install -a
dh_installdocs -a
dh_sphinxdoc -a
dh_sphinxdoc: Sphinx documentation not found
dh_installchangelogs -a
debian/rules override_dh_installman
make[1]: Entering directory '/<<BUILDDIR>>/mash-2.1+dfsg'
mkdir -p /<<BUILDDIR>>/mash-2.1+dfsg/debian/man
asciidoctor -a docdate='' -b manpage /<<BUILDDIR>>/mash-2.1+dfsg/debian/man_src/*.adoc
cp /<<BUILDDIR>>/mash-2.1+dfsg/debian/man_src/*.? /<<BUILDDIR>>/mash-2.1+dfsg/debian/man
dh_installman --
make[1]: Leaving directory '/<<BUILDDIR>>/mash-2.1+dfsg'
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: debian/mash/usr/bin/mash contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mash/usr/bin/mash was not linked against libkj-0.7.0.so (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mash/usr/bin/mash was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mash/usr/bin/mash was not linked against libgslcblas.so.0 (it uses none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dpkg-gencontrol: warning: Depends field of package libmash-dev: substitution variable ${shlibs:Depends} used, but is not defined
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'mash-dbgsym' in '../mash-dbgsym_2.1+dfsg-2_armhf.deb'.
dpkg-deb: building package 'mash' in '../mash_2.1+dfsg-2_armhf.deb'.
dpkg-deb: building package 'libmash-dev' in '../libmash-dev_2.1+dfsg-2_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../mash_2.1+dfsg-2_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2019-02-12T05:13:42Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
mash_2.1+dfsg-2_armhf.changes:
------------------------------
Format: 1.8
Date: Thu, 07 Feb 2019 15:58:49 +0100
Source: mash
Binary: mash libmash-dev mash-doc
Architecture: armhf
Version: 2.1+dfsg-2
Distribution: buster-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
libmash-dev - development headers and static library for Mash
mash - fast genome and metagenome distance estimation using MinHash
mash-doc - documentation for Mash
Changes:
mash (2.1+dfsg-2) unstable; urgency=medium
.
* Team upload.
* Do not test for 32 bit archs since test results were calculated for 64 bit.
Checksums-Sha1:
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4d374f4364fef7d4bac4f3e902ebb32e4a99de14 6827 mash_2.1+dfsg-2_armhf.buildinfo
025d3eb4cd2e6301d94bff5bd791142637020a46 118400 mash_2.1+dfsg-2_armhf.deb
Checksums-Sha256:
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f3bbdaf3f96e52660c0cead2074984fafac138f0bbc9b34f912e62de7d554e4c 2711580 mash-dbgsym_2.1+dfsg-2_armhf.deb
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8ffb9b7ccc3083d8fcf0c0dd0a4bec6a358412bbb8b3912a33221ede3e74b3cb 118400 mash_2.1+dfsg-2_armhf.deb
Files:
1d4b4eb18718e4ee4e33add8398add41 155284 libdevel optional libmash-dev_2.1+dfsg-2_armhf.deb
8424fcac494a1815e4414eb7b7a9f6bc 2711580 debug optional mash-dbgsym_2.1+dfsg-2_armhf.deb
4ef3e6bb31321b349a59f13a74a3b8b2 6827 science optional mash_2.1+dfsg-2_armhf.buildinfo
8fe9915614b6314a9da0c556b44aa130 118400 science optional mash_2.1+dfsg-2_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
libmash-dev_2.1+dfsg-2_armhf.deb
--------------------------------
new Debian package, version 2.0.
size 155284 bytes: control archive=1312 bytes.
469 bytes, 13 lines control
1702 bytes, 26 lines md5sums
Package: libmash-dev
Source: mash
Version: 2.1+dfsg-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 896
Section: libdevel
Priority: optional
Homepage: https://mash.readthedocs.io
Description: development headers and static library for Mash
This package contains C++ development headers and a static library to
build custom programs utilizing Mash, a MinHash based genome distance
estimator.
drwxr-xr-x root/root 0 2019-02-07 14:58 ./
drwxr-xr-x root/root 0 2019-02-07 14:58 ./usr/
drwxr-xr-x root/root 0 2019-02-07 14:58 ./usr/include/
drwxr-xr-x root/root 0 2019-02-07 14:58 ./usr/include/mash/
-rw-r--r-- root/root 3491 2019-02-07 14:58 ./usr/include/mash/Command.h
-rw-r--r-- root/root 496 2019-02-07 14:58 ./usr/include/mash/CommandBounds.h
-rw-r--r-- root/root 2373 2019-02-07 14:58 ./usr/include/mash/CommandContain.h
-rw-r--r-- root/root 2876 2019-02-07 14:58 ./usr/include/mash/CommandDistance.h
-rw-r--r-- root/root 2373 2019-02-07 14:58 ./usr/include/mash/CommandFind.h
-rw-r--r-- root/root 621 2019-02-07 14:58 ./usr/include/mash/CommandInfo.h
-rw-r--r-- root/root 721 2019-02-07 14:58 ./usr/include/mash/CommandList.h
-rw-r--r-- root/root 517 2019-02-07 14:58 ./usr/include/mash/CommandPaste.h
-rw-r--r-- root/root 3413 2019-02-07 14:58 ./usr/include/mash/CommandScreen.h
-rw-r--r-- root/root 497 2019-02-07 14:58 ./usr/include/mash/CommandSketch.h
-rw-r--r-- root/root 1680 2019-02-07 14:58 ./usr/include/mash/CommandTriangle.h
-rw-r--r-- root/root 1040 2019-02-07 14:58 ./usr/include/mash/HashList.h
-rw-r--r-- root/root 805 2019-02-07 14:58 ./usr/include/mash/HashPriorityQueue.h
-rw-r--r-- root/root 948 2019-02-07 14:58 ./usr/include/mash/HashSet.h
-rw-r--r-- root/root 1455 2019-02-07 14:58 ./usr/include/mash/MinHashHeap.h
-rw-r--r-- root/root 8040 2019-02-07 14:58 ./usr/include/mash/Sketch.h
-rw-r--r-- root/root 1697 2019-02-07 14:58 ./usr/include/mash/ThreadPool.h
drwxr-xr-x root/root 0 2019-02-07 14:58 ./usr/include/mash/capnp/
-rw-r--r-- root/root 56829 2019-02-07 14:58 ./usr/include/mash/capnp/MinHash.capnp.h
-rw-r--r-- root/root 565 2019-02-07 14:58 ./usr/include/mash/hash.h
-rw-r--r-- root/root 12437 2019-02-07 14:58 ./usr/include/mash/kseq.h
-rw-r--r-- root/root 301 2019-02-07 14:58 ./usr/include/mash/memcpyLink.h
-rw-r--r-- root/root 678 2019-02-07 14:58 ./usr/include/mash/sketchParameterSetup.h
-rw-r--r-- root/root 292 2019-02-07 14:58 ./usr/include/mash/version.h
drwxr-xr-x root/root 0 2019-02-07 14:58 ./usr/lib/
-rw-r--r-- root/root 772608 2019-02-07 14:58 ./usr/lib/libmash.a
drwxr-xr-x root/root 0 2019-02-07 14:58 ./usr/share/
drwxr-xr-x root/root 0 2019-02-07 14:58 ./usr/share/doc/
drwxr-xr-x root/root 0 2019-02-07 14:58 ./usr/share/doc/libmash-dev/
-rw-r--r-- root/root 1119 2019-02-07 14:58 ./usr/share/doc/libmash-dev/changelog.Debian.gz
-rw-r--r-- root/root 15393 2019-02-07 14:58 ./usr/share/doc/libmash-dev/copyright
mash-dbgsym_2.1+dfsg-2_armhf.deb
--------------------------------
new Debian package, version 2.0.
size 2711580 bytes: control archive=532 bytes.
365 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: mash-dbgsym
Source: mash
Version: 2.1+dfsg-2
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 2741
Depends: mash (= 2.1+dfsg-2)
Section: debug
Priority: optional
Description: debug symbols for mash
Build-Ids: 394207ff50e52cc3a9a719ff6f3c8afaa0cb7b7b
drwxr-xr-x root/root 0 2019-02-07 14:58 ./
drwxr-xr-x root/root 0 2019-02-07 14:58 ./usr/
drwxr-xr-x root/root 0 2019-02-07 14:58 ./usr/lib/
drwxr-xr-x root/root 0 2019-02-07 14:58 ./usr/lib/debug/
drwxr-xr-x root/root 0 2019-02-07 14:58 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2019-02-07 14:58 ./usr/lib/debug/.build-id/39/
-rw-r--r-- root/root 2796516 2019-02-07 14:58 ./usr/lib/debug/.build-id/39/4207ff50e52cc3a9a719ff6f3c8afaa0cb7b7b.debug
drwxr-xr-x root/root 0 2019-02-07 14:58 ./usr/share/
drwxr-xr-x root/root 0 2019-02-07 14:58 ./usr/share/doc/
lrwxrwxrwx root/root 0 2019-02-07 14:58 ./usr/share/doc/mash-dbgsym -> mash
mash_2.1+dfsg-2_armhf.deb
-------------------------
new Debian package, version 2.0.
size 118400 bytes: control archive=1164 bytes.
1065 bytes, 18 lines control
591 bytes, 9 lines md5sums
Package: mash
Version: 2.1+dfsg-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 342
Depends: libc6 (>= 2.4), libcapnp-0.7.0, libgcc1 (>= 1:3.5), libgsl23 (>= 2.5), libgslcblas0 (>= 2.4), libmurmurhash1 (>= 0.2), libstdc++6 (>= 5.2), zlib1g (>= 1:1.1.4)
Section: science
Priority: optional
Homepage: https://mash.readthedocs.io
Description: fast genome and metagenome distance estimation using MinHash
Mash uses MinHash locality-sensitive hashing to reduce large biosequences to
a representative sketch and rapidly estimate pairwise distances between
genomes or metagenomes. Mash sketch databases effectively delineate known
species boundaries, allow construction of approximate phylogenies, and can be
searched in seconds using assembled genomes or raw sequencing runs from
Illumina, Pacific Biosciences, and Oxford Nanopore.
For metagenomics, Mash scales to thousands of samples and can replicate Human
Microbiome Project and Global Ocean Survey results in a fraction of the time.
drwxr-xr-x root/root 0 2019-02-07 14:58 ./
drwxr-xr-x root/root 0 2019-02-07 14:58 ./usr/
drwxr-xr-x root/root 0 2019-02-07 14:58 ./usr/bin/
-rwxr-xr-x root/root 312840 2019-02-07 14:58 ./usr/bin/mash
drwxr-xr-x root/root 0 2019-02-07 14:58 ./usr/share/
drwxr-xr-x root/root 0 2019-02-07 14:58 ./usr/share/doc/
drwxr-xr-x root/root 0 2019-02-07 14:58 ./usr/share/doc/mash/
-rw-r--r-- root/root 1119 2019-02-07 14:58 ./usr/share/doc/mash/changelog.Debian.gz
-rw-r--r-- root/root 15393 2019-02-07 14:58 ./usr/share/doc/mash/copyright
drwxr-xr-x root/root 0 2019-02-07 14:58 ./usr/share/man/
drwxr-xr-x root/root 0 2019-02-07 14:58 ./usr/share/man/man1/
-rw-r--r-- root/root 1702 2019-02-07 14:58 ./usr/share/man/man1/mash-dist.1.gz
-rw-r--r-- root/root 596 2019-02-07 14:58 ./usr/share/man/man1/mash-info.1.gz
-rw-r--r-- root/root 486 2019-02-07 14:58 ./usr/share/man/man1/mash-paste.1.gz
-rw-r--r-- root/root 1140 2019-02-07 14:58 ./usr/share/man/man1/mash-screen.1.gz
-rw-r--r-- root/root 1739 2019-02-07 14:58 ./usr/share/man/man1/mash-sketch.1.gz
-rw-r--r-- root/root 723 2019-02-07 14:58 ./usr/share/man/man1/mash.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 130232
Build-Time: 273
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 918
Job: mash_2.1+dfsg-2
Machine Architecture: armhf
Package: mash
Package-Time: 1247
Source-Version: 2.1+dfsg-2
Space: 130232
Status: successful
Version: 2.1+dfsg-2
--------------------------------------------------------------------------------
Finished at 2019-02-12T05:13:42Z
Build needed 00:20:47, 130232k disc space