mash →
2.0-2 →
armhf → 2017-10-07 05:00:55
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-04
+==============================================================================+
| mash 2.0-2 (armhf) Sat, 07 Oct 2017 04:45:46 +0000 |
+==============================================================================+
Package: mash
Version: 2.0-2
Source Version: 2.0-2
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-c6eefd6a-2558-4ad3-abee-80495da40910' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [10.3 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [12.1 MB]
Fetched 22.4 MB in 24s (924 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'mash' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/mash.git
Please use:
git clone https://anonscm.debian.org/git/debian-med/mash.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 6831 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main mash 2.0-2 (dsc) [1789 B]
Get:2 http://172.17.0.1/private buster-staging/main mash 2.0-2 (tar) [4671 kB]
Get:3 http://172.17.0.1/private buster-staging/main mash 2.0-2 (diff) [2158 kB]
Fetched 6831 kB in 1s (6223 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/mash-0RBz6L/mash-2.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/mash-0RBz6L' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-7c2BJ5/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-7c2BJ5/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-7c2BJ5/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-7c2BJ5/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-7c2BJ5/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-7c2BJ5/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-7c2BJ5/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-7c2BJ5/apt_archive ./ Packages [434 B]
Fetched 2110 B in 0s (3498 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates libreadline5 libsasl2-modules libssl1.1 openssl
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 19 not upgraded.
Need to get 770 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-7c2BJ5/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [770 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 770 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 15082 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 9), capnproto (>= 0.6.1), libcapnp-dev (>= 0.6.1), libgsl-dev, dh-autoreconf, zlib1g-dev, python-sphinx, libjs-mathjax, asciidoctor
Filtered Build-Depends: debhelper (>= 9), capnproto (>= 0.6.1), libcapnp-dev (>= 0.6.1), libgsl-dev, dh-autoreconf, zlib1g-dev, python-sphinx, libjs-mathjax, asciidoctor
dpkg-deb: building package 'sbuild-build-depends-mash-dummy' in '/<<BUILDDIR>>/resolver-7c2BJ5/apt_archive/sbuild-build-depends-mash-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-mash-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-7c2BJ5/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-7c2BJ5/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-7c2BJ5/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-7c2BJ5/apt_archive ./ Sources [556 B]
Get:5 copy:/<<BUILDDIR>>/resolver-7c2BJ5/apt_archive ./ Packages [639 B]
Fetched 2528 B in 0s (4093 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install mash build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libreadline5 libsasl2-modules
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
asciidoctor autoconf automake autopoint autotools-dev bsdmainutils capnproto
debhelper dh-autoreconf dh-strip-nondeterminism docutils-common file
fonts-mathjax gettext gettext-base groff-base intltool-debian
libarchive-zip-perl libbsd0 libcapnp-0.6.1 libcapnp-dev libcroco3 libexpat1
libfile-stripnondeterminism-perl libglib2.0-0 libgsl-dev libgsl23
libgslcblas0 libicu57 libjs-jquery libjs-mathjax libjs-sphinxdoc
libjs-underscore libmagic-mgc libmagic1 libpipeline1 libpython-stdlib
libpython2.7-minimal libpython2.7-stdlib libruby2.3 libsigsegv2 libssl1.0.2
libtimedate-perl libtool libxml2 libyaml-0-2 m4 man-db mime-support
po-debconf python python-alabaster python-babel python-babel-localedata
python-certifi python-chardet python-docutils python-idna python-imagesize
python-jinja2 python-markupsafe python-minimal python-pkg-resources
python-pygments python-requests python-roman python-six python-sphinx
python-typing python-tz python-urllib3 python2.7 python2.7-minimal rake ruby
ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert
ruby-test-unit ruby2.3 rubygems-integration sgml-base sphinx-common xml-core
zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff
gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html
fonts-mathjax-extras fonts-stix libjs-mathjax-doc libtool-doc gfortran
| fortran95-compiler gcj-jdk m4-doc less www-browser libmail-box-perl
python-doc python-tk fonts-linuxlibertine | ttf-linux-libertine
texlive-lang-french texlive-latex-base texlive-latex-recommended
python-jinja2-doc python-setuptools ttf-bitstream-vera python-cryptography
python-openssl python-socks python-sphinx-rtd-theme dvipng
texlive-latex-extra texlive-fonts-recommended texlive-generic-extra latexmk
imagemagick-6.q16 sphinx-doc python-ntlm python2.7-doc binfmt-support ri
ruby-dev bundler sgml-base-doc
Recommended packages:
curl | wget | lynx-cur libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs javascript-common libltdl-dev libmail-sendmail-perl
docutils-doc libpaper-utils python-pil python-enum34 python-cryptography
python-ipaddress python-openssl zip fonts-lato
The following NEW packages will be installed:
asciidoctor autoconf automake autopoint autotools-dev bsdmainutils capnproto
debhelper dh-autoreconf dh-strip-nondeterminism docutils-common file
fonts-mathjax gettext gettext-base groff-base intltool-debian
libarchive-zip-perl libbsd0 libcapnp-0.6.1 libcapnp-dev libcroco3 libexpat1
libfile-stripnondeterminism-perl libglib2.0-0 libgsl-dev libgsl23
libgslcblas0 libicu57 libjs-jquery libjs-mathjax libjs-sphinxdoc
libjs-underscore libmagic-mgc libmagic1 libpipeline1 libpython-stdlib
libpython2.7-minimal libpython2.7-stdlib libruby2.3 libsigsegv2 libssl1.0.2
libtimedate-perl libtool libxml2 libyaml-0-2 m4 man-db mime-support
po-debconf python python-alabaster python-babel python-babel-localedata
python-certifi python-chardet python-docutils python-idna python-imagesize
python-jinja2 python-markupsafe python-minimal python-pkg-resources
python-pygments python-requests python-roman python-six python-sphinx
python-typing python-tz python-urllib3 python2.7 python2.7-minimal rake ruby
ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert
ruby-test-unit ruby2.3 rubygems-integration sbuild-build-depends-mash-dummy
sgml-base sphinx-common xml-core zlib1g-dev
0 upgraded, 87 newly installed, 0 to remove and 19 not upgraded.
Need to get 43.8 MB of archives.
After this operation, 193 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-7c2BJ5/apt_archive ./ sbuild-build-depends-mash-dummy 0.invalid.0 [842 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-9 [1005 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.8.6-2 [95.8 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 9.0.12+nmu1 [178 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.4.2-1 [24.2 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.7.6.1-2 [1014 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf libpython2.7-minimal armhf 2.7.13-2 [389 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf python2.7-minimal armhf 2.7.13-2 [1178 kB]
Get:9 http://172.17.0.1/private buster-staging/main armhf python-minimal armhf 2.7.13-2 [40.5 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf mime-support all 3.60 [36.7 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf libexpat1 armhf 2.2.3-1 [67.1 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf libpython2.7-stdlib armhf 2.7.13-2 [1827 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf python2.7 armhf 2.7.13-2 [285 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf libpython-stdlib armhf 2.7.13-2 [20.0 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf python armhf 2.7.13-2 [154 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf sgml-base all 1.29 [14.8 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf libssl1.0.2 armhf 1.0.2l-2 [893 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.32-1 [225 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf libmagic1 armhf 1:5.32-1 [105 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.32-1 [63.7 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-4 [117 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf libicu57 armhf 57.1-6 [7427 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-4 [609 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf rubygems-integration all 1.11 [4994 B]
Get:25 http://172.17.0.1/private buster-staging/main armhf rake all 12.0.0-1 [45.7 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf ruby-did-you-mean all 1.0.0-2 [11.2 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf ruby-minitest all 5.10.3-1 [53.5 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf ruby-net-telnet all 0.1.1-2 [12.5 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf ruby-power-assert all 0.3.0-1 [7902 B]
Get:30 http://172.17.0.1/private buster-staging/main armhf ruby-test-unit all 3.2.5-1 [71.7 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf libyaml-0-2 armhf 0.1.7-2 [39.9 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf libruby2.3 armhf 2.3.3-1 [2864 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf ruby2.3 armhf 2.3.3-1 [186 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf ruby armhf 1:2.3.3 [10.8 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf asciidoctor all 1.5.5-1 [183 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.11-1 [29.3 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20161112.1 [73.4 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.15.1-3 [736 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-4 [434 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf libcapnp-0.6.1 armhf 0.6.1-1 [571 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf capnproto armhf 0.6.1-1 [188 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-2 [545 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 14 [15.9 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.59-1 [95.5 kB]
Get:47 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.038-1 [17.6 kB]
Get:48 http://172.17.0.1/private buster-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:49 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 0.038-1 [11.1 kB]
Get:50 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.54.0-1 [2650 kB]
Get:51 http://172.17.0.1/private buster-staging/main armhf libcroco3 armhf 0.6.12-1 [132 kB]
Get:52 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-4 [1218 kB]
Get:53 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:54 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:55 http://172.17.0.1/private buster-staging/main armhf debhelper all 10.8 [973 kB]
Get:56 http://172.17.0.1/private buster-staging/main armhf xml-core all 0.18 [23.4 kB]
Get:57 http://172.17.0.1/private buster-staging/main armhf docutils-common all 0.14+dfsg-1 [204 kB]
Get:58 http://172.17.0.1/private buster-staging/main armhf fonts-mathjax all 2.7.0-2 [960 kB]
Get:59 http://172.17.0.1/private buster-staging/main armhf libcapnp-dev armhf 0.6.1-1 [924 kB]
Get:60 http://172.17.0.1/private buster-staging/main armhf libgslcblas0 armhf 2.4+dfsg-6 [75.1 kB]
Get:61 http://172.17.0.1/private buster-staging/main armhf libgsl23 armhf 2.4+dfsg-6 [681 kB]
Get:62 http://172.17.0.1/private buster-staging/main armhf libgsl-dev armhf 2.4+dfsg-6 [863 kB]
Get:63 http://172.17.0.1/private buster-staging/main armhf libjs-jquery all 3.2.1-1 [154 kB]
Get:64 http://172.17.0.1/private buster-staging/main armhf libjs-underscore all 1.8.3~dfsg-1 [63.8 kB]
Get:65 http://172.17.0.1/private buster-staging/main armhf libjs-sphinxdoc all 1.6.4-1 [84.9 kB]
Get:66 http://172.17.0.1/private buster-staging/main armhf python-babel-localedata all 2.4.0+dfsg.1-2 [3415 kB]
Get:67 http://172.17.0.1/private buster-staging/main armhf python-pkg-resources all 36.2.7-2 [169 kB]
Get:68 http://172.17.0.1/private buster-staging/main armhf python-tz all 2017.2-2 [33.9 kB]
Get:69 http://172.17.0.1/private buster-staging/main armhf python-babel all 2.4.0+dfsg.1-2 [84.3 kB]
Get:70 http://172.17.0.1/private buster-staging/main armhf python-certifi all 2017.4.17-2 [177 kB]
Get:71 http://172.17.0.1/private buster-staging/main armhf python-chardet all 3.0.4-1 [80.2 kB]
Get:72 http://172.17.0.1/private buster-staging/main armhf python-roman all 2.0.0-2 [8130 B]
Get:73 http://172.17.0.1/private buster-staging/main armhf python-docutils all 0.14+dfsg-1 [379 kB]
Get:74 http://172.17.0.1/private buster-staging/main armhf python-idna all 2.5-1 [33.1 kB]
Get:75 http://172.17.0.1/private buster-staging/main armhf python-imagesize all 0.7.1-1 [3814 B]
Get:76 http://172.17.0.1/private buster-staging/main armhf python-markupsafe armhf 1.0-1 [13.4 kB]
Get:77 http://172.17.0.1/private buster-staging/main armhf python-jinja2 all 2.9.6-1 [117 kB]
Get:78 http://172.17.0.1/private buster-staging/main armhf python-pygments all 2.2.0+dfsg-1 [590 kB]
Get:79 http://172.17.0.1/private buster-staging/main armhf python-six all 1.11.0-1 [14.9 kB]
Get:80 http://172.17.0.1/private buster-staging/main armhf python-urllib3 all 1.21.1-1 [97.0 kB]
Get:81 http://172.17.0.1/private buster-staging/main armhf python-requests all 2.18.1-1 [76.5 kB]
Get:82 http://172.17.0.1/private buster-staging/main armhf python-alabaster all 0.7.8-1 [18.4 kB]
Get:83 http://172.17.0.1/private buster-staging/main armhf python-typing all 3.6.1-1 [21.5 kB]
Get:84 http://172.17.0.1/private buster-staging/main armhf sphinx-common all 1.6.4-1 [419 kB]
Get:85 http://172.17.0.1/private buster-staging/main armhf python-sphinx all 1.6.4-1 [458 kB]
Get:86 http://172.17.0.1/private buster-staging/main armhf zlib1g-dev armhf 1:1.2.8.dfsg-5 [198 kB]
Get:87 http://172.17.0.1/private buster-staging/main armhf libjs-mathjax all 2.7.0-2 [5603 kB]
debconf: delaying package configuration, since apt-utils is not installed
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update-alternatives: using /usr/share/docutils/scripts/python2/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode
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Setting up python-sphinx (1.6.4-1) ...
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Processing triggers for libc-bin (2.24-14) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 3.19.0-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.29.1-3+rpi1 dpkg-dev_1.18.24 g++-7_7.2.0-5 gcc-7_7.2.0-5 libc6-dev_2.24-14 libstdc++-7-dev_7.2.0-5 libstdc++6_7.2.0-5 linux-libc-dev_4.9.30-2+deb9u2+rpi1+stretch
Package versions: adduser_3.116 apt_1.5 asciidoctor_1.5.5-1 autoconf_2.69-11 automake_1:1.15.1-3 autopoint_0.19.8.1-4 autotools-dev_20161112.1 base-files_10+rpi1 base-passwd_3.5.44 bash_4.4-5 binutils_2.29.1-3+rpi1 binutils-arm-linux-gnueabihf_2.29.1-3+rpi1 binutils-common_2.29.1-3+rpi1 bsdmainutils_9.0.12+nmu1 bsdutils_1:2.29.2-5 build-essential_12.4 bzip2_1.0.6-8.1 ca-certificates_20170717 capnproto_0.6.1-1 coreutils_8.26-3 cpio_2.11+dfsg-6 cpp_4:7.2.0-1d1 cpp-7_7.2.0-5 dash_0.5.8-2.5 debconf_1.5.63 debhelper_10.8 debianutils_4.8.2 dh-autoreconf_14 dh-strip-nondeterminism_0.038-1 diffutils_1:3.6-1 dirmngr_2.2.1-1 dmsetup_2:1.02.142-1 docutils-common_0.14+dfsg-1 dpkg_1.18.24 dpkg-dev_1.18.24 e2fslibs_1.43.6-1 e2fsprogs_1.43.6-1 fakeroot_1.22-1 fdisk_2.29.2-5 file_1:5.32-1 findutils_4.6.0+git+20170729-2 fonts-mathjax_2.7.0-2 g++_4:7.2.0-1d1 g++-7_7.2.0-5 gcc_4:7.2.0-1d1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-14 gcc-5-base_5.4.1-4 gcc-7_7.2.0-5 gcc-7-base_7.2.0-5 gettext_0.19.8.1-4 gettext-base_0.19.8.1-4 gnupg_2.2.1-1 gnupg-agent_2.2.1-1 gnupg-l10n_2.2.1-1 gnupg-utils_2.2.1-1 gpg_2.2.1-1 gpg-agent_2.2.1-1 gpg-wks-client_2.2.1-1 gpg-wks-server_2.2.1-1 gpgconf_2.2.1-1 gpgsm_2.2.1-1 gpgv_2.2.1-1 grep_3.1-2 groff-base_1.22.3-9 gzip_1.6-5 hostname_3.18 init-system-helpers_1.49 initramfs-tools_0.130 initramfs-tools-core_0.130 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-9+rpi1 kmod_24-1 libacl1_2.2.52-3 libapparmor1_2.11.0-11 libapt-pkg5.0_1.5 libarchive-zip-perl_1.59-1 libasan4_7.2.0-5 libassuan0_2.4.3-3 libatomic1_7.2.0-5 libattr1_1:2.4.47-2 libaudit-common_1:2.7.7-1 libaudit1_1:2.7.7-1+b1 libbinutils_2.29.1-3+rpi1 libblkid1_2.29.2-5 libbsd0_0.8.6-2 libbz2-1.0_1.0.6-8.1 libc-bin_2.24-14 libc-dev-bin_2.24-14 libc6_2.24-14 libc6-dev_2.24-14 libcap-ng0_0.7.7-3 libcap2_1:2.25-1 libcapnp-0.6.1_0.6.1-1 libcapnp-dev_0.6.1-1 libcc1-0_7.2.0-5 libcilkrts5_7.2.0-5 libcomerr2_1.43.6-1 libcroco3_0.6.12-1 libcryptsetup4_2:1.7.5-1 libdb5.3_5.3.28-13.1 libdbus-1-3_1.11.16+really1.10.22-1 libdebconfclient0_0.230 libdevmapper1.02.1_2:1.02.142-1 libdpkg-perl_1.18.24 libdrm-common_2.4.82-1+rpi1 libdrm2_2.4.82-1+rpi1 libexpat1_2.2.3-1 libfakeroot_1.22-1 libfdisk1_2.29.2-5 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.038-1 libgcc-7-dev_7.2.0-5 libgcc1_1:7.2.0-5 libgcrypt20_1.7.9-1 libgdbm3_1.8.3-14 libglib2.0-0_2.54.0-1 libgmp10_2:6.1.2+dfsg-1 libgnutls30_3.5.15-2 libgomp1_7.2.0-5 libgpg-error0_1.27-3 libgsl-dev_2.4+dfsg-6 libgsl23_2.4+dfsg-6 libgslcblas0_2.4+dfsg-6 libhogweed4_3.3-2 libicu57_57.1-6 libidn11_1.33-2 libidn2-0_2.0.2-5 libip4tc0_1.6.1-2 libisl15_0.18-1 libjs-jquery_3.2.1-1 libjs-mathjax_2.7.0-2 libjs-sphinxdoc_1.6.4-1 libjs-underscore_1.8.3~dfsg-1 libklibc_2.0.4-9+rpi1 libkmod2_24-1 libksba8_1.3.5-2 libldap-2.4-2_2.4.45+dfsg-1 libldap-common_2.4.45+dfsg-1 liblz4-1_0.0~r131-2 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.32-1 libmagic1_1:5.32-1 libmount1_2.29.2-5 libmpc3_1.0.3-2 libmpfr4_3.1.6-1 libncurses5_6.0+20170902-1 libncursesw5_6.0+20170902-1 libnettle6_3.3-2 libnih-dbus1_1.0.3-8 libnih1_1.0.3-8 libnpth0_1.5-2 libp11-kit0_0.23.7-3 libpam-modules_1.1.8-3.6 libpam-modules-bin_1.1.8-3.6 libpam-runtime_1.1.8-3.6 libpam0g_1.1.8-3.6 libpcre3_2:8.39-4 libperl5.24_5.24.1-7 libperl5.26_5.26.0-8 libpipeline1_1.4.2-1 libplymouth4_0.9.3-1 libpng16-16_1.6.32-3 libprocps6_2:3.3.12-3 libpython-stdlib_2.7.13-2 libpython2.7-minimal_2.7.13-2 libpython2.7-stdlib_2.7.13-2 libreadline5_5.2+dfsg-3 libreadline7_7.0-3 libruby2.3_2.3.3-1 libsasl2-2_2.1.27~101-g0780600+dfsg-3 libsasl2-modules_2.1.27~101-g0780600+dfsg-3 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3 libseccomp2_2.3.1-2.1 libselinux1_2.7-2 libsemanage-common_2.7-2 libsemanage1_2.7-2 libsepol1_2.7-1 libsigsegv2_2.11-1 libsmartcols1_2.29.2-5 libsqlite3-0_3.20.1-1 libss2_1.43.6-1 libssl1.0.2_1.0.2l-2 libssl1.1_1.1.0f-5 libstdc++-7-dev_7.2.0-5 libstdc++6_7.2.0-5 libsystemd0_234-3 libtasn1-6_4.12-2.1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20170902-1 libtool_2.4.6-2 libubsan0_7.2.0-5 libudev1_234-3 libunistring2_0.9.7-2 libustr-1.0-1_1.0.4-6 libuuid1_2.29.2-5 libxml2_2.9.4+dfsg1-4 libyaml-0-2_0.1.7-2 linux-base_4.5 linux-libc-dev_4.9.30-2+deb9u2+rpi1+stretch login_1:4.4-4.1 lsb-base_9.20170808+rpi1 m4_1.4.18-1 make_4.1-9.1 makedev_2.3.1-93 man-db_2.7.6.1-2 mawk_1.3.3-17 mime-support_3.60 mount_2.29.2-5 mountall_2.54 multiarch-support_2.24-14 ncurses-base_6.0+20170902-1 ncurses-bin_6.0+20170902-1 openssl_1.1.0f-5 passwd_1:4.4-4.1 patch_2.7.5-1 perl_5.26.0-8 perl-base_5.26.0-8 perl-modules-5.24_5.24.1-7 perl-modules-5.26_5.26.0-8 pinentry-curses_1.0.0-2 plymouth_0.9.3-1 po-debconf_1.0.20 procps_2:3.3.12-3 python_2.7.13-2 python-alabaster_0.7.8-1 python-babel_2.4.0+dfsg.1-2 python-babel-localedata_2.4.0+dfsg.1-2 python-certifi_2017.4.17-2 python-chardet_3.0.4-1 python-docutils_0.14+dfsg-1 python-idna_2.5-1 python-imagesize_0.7.1-1 python-jinja2_2.9.6-1 python-markupsafe_1.0-1 python-minimal_2.7.13-2 python-pkg-resources_36.2.7-2 python-pygments_2.2.0+dfsg-1 python-requests_2.18.1-1 python-roman_2.0.0-2 python-six_1.11.0-1 python-sphinx_1.6.4-1 python-typing_3.6.1-1 python-tz_2017.2-2 python-urllib3_1.21.1-1 python2.7_2.7.13-2 python2.7-minimal_2.7.13-2 rake_12.0.0-1 raspbian-archive-keyring_20120528.2 readline-common_7.0-3 ruby_1:2.3.3 ruby-did-you-mean_1.0.0-2 ruby-minitest_5.10.3-1 ruby-net-telnet_0.1.1-2 ruby-power-assert_0.3.0-1 ruby-test-unit_3.2.5-1 ruby2.3_2.3.3-1 rubygems-integration_1.11 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-mash-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.10 sgml-base_1.29 sphinx-common_1.6.4-1 systemd_234-3 sysvinit-utils_2.88dsf-59.10 tar_1.29b-2 tzdata_2017b-2 udev_234-3 util-linux_2.29.2-5 xml-core_0.18 xz-utils_5.2.2-1.3 zlib1g_1:1.2.8.dfsg-5 zlib1g-dev_1:1.2.8.dfsg-5
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Sun Oct 1 17:24:37 2017 UTC
gpgv: using RSA key 8451F9178172E7E2DC73F79551F84A8FECCA7E09
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./mash_2.0-2.dsc
dpkg-source: info: extracting mash in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking mash_2.0.orig.tar.gz
dpkg-source: info: unpacking mash_2.0-2.debian.tar.xz
dpkg-source: info: applying hardening.patch
dpkg-source: info: applying use_debian_mathjax.patch
dpkg-source: info: applying drop_memcpy_wrapper.patch
dpkg-source: info: applying link_dynamically_against_capnp.patch
dpkg-source: info: applying parallel.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-c6eefd6a-2558-4ad3-abee-80495da40910
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package mash
dpkg-buildpackage: info: source version 2.0-2
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build mash-2.0
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --with autoreconf,sphinxdoc --parallel
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
rm -rf /<<PKGBUILDDIR>>/debian/sphinxdoc /<<PKGBUILDDIR>>/debian/man
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_autoreconf_clean -O--parallel
dh_clean -O--parallel
debian/rules build-arch
dh build-arch --with autoreconf,sphinxdoc --parallel
dh_update_autotools_config -a -O--parallel
dh_autoreconf -a -O--parallel
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure -- --with-capnp=/usr --with-gsl=/usr --prefix=/<<PKGBUILDDIR>>/debian/tmp/usr
./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --libexecdir=\${prefix}/lib/arm-linux-gnueabihf --disable-maintainer-mode --disable-dependency-tracking --with-capnp=/usr --with-gsl=/usr --prefix=/<<PKGBUILDDIR>>/debian/tmp/usr
configure: WARNING: unrecognized options: --disable-silent-rules, --disable-maintainer-mode, --disable-dependency-tracking
checking for g++... g++
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking how to run the C++ preprocessor... g++ -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking zlib.h usability... yes
checking zlib.h presence... yes
checking for zlib.h... yes
checking for capnp... yes
checking capnp/common.h usability... yes
checking capnp/common.h presence... yes
checking for capnp/common.h... yes
checking gsl/gsl_cdf.h usability... yes
checking gsl/gsl_cdf.h presence... yes
checking for gsl/gsl_cdf.h... yes
configure: creating ./config.status
config.status: creating Makefile
configure: WARNING: unrecognized options: --disable-silent-rules, --disable-maintainer-mode, --disable-dependency-tracking
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_build
make -j4
make[2]: Entering directory '/<<PKGBUILDDIR>>'
cd src/mash/capnp;export PATH=/usr/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games;capnp compile -I /usr/include -oc++ MinHash.capnp
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/Command.o src/mash/Command.cpp
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/CommandBounds.o src/mash/CommandBounds.cpp
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/CommandContain.o src/mash/CommandContain.cpp
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/CommandDistance.o src/mash/CommandDistance.cpp
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/CommandScreen.o src/mash/CommandScreen.cpp
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/CommandFind.o src/mash/CommandFind.cpp
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/CommandInfo.o src/mash/CommandInfo.cpp
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/CommandPaste.o src/mash/CommandPaste.cpp
In file included from /usr/include/c++/7/algorithm:62:0,
from src/mash/bloom_filter.hpp:23,
from src/mash/MinHashHeap.h:8,
from src/mash/Sketch.h:17,
from src/mash/CommandScreen.h:11,
from src/mash/CommandScreen.cpp:7:
/usr/include/c++/7/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
In file included from /usr/include/c++/7/queue:62:0,
from src/mash/HashPriorityQueue.h:11,
from src/mash/MinHashHeap.h:5,
from src/mash/Sketch.h:17,
from src/mash/CommandScreen.h:11,
from src/mash/CommandScreen.cpp:7:
/usr/include/c++/7/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/7/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from src/mash/bloom_filter.hpp:23,
from src/mash/MinHashHeap.h:8,
from src/mash/Sketch.h:17,
from src/mash/CommandScreen.h:11,
from src/mash/CommandScreen.cpp:7:
/usr/include/c++/7/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In member function ‘virtual int mash::CommandScreen::run() const’:
/usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/CommandSketch.o src/mash/CommandSketch.cpp
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/CommandList.o src/mash/CommandList.cpp
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/hash.o src/mash/hash.cpp
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/HashList.o src/mash/HashList.cpp
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/HashPriorityQueue.o src/mash/HashPriorityQueue.cpp
In file included from /usr/include/c++/7/bits/stl_algo.h:61:0,
from /usr/include/c++/7/algorithm:62,
from src/mash/HashList.cpp:8:
/usr/include/c++/7/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/7/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from src/mash/HashList.cpp:8:
/usr/include/c++/7/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In member function ‘void HashList::sort()’:
/usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
In file included from /usr/include/c++/7/queue:62:0,
from src/mash/HashPriorityQueue.h:11,
from src/mash/HashPriorityQueue.cpp:7:
/usr/include/c++/7/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<std::less<long long unsigned int> >]’:
/usr/include/c++/7/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >’ changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/HashSet.o src/mash/HashSet.cpp
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/MinHashHeap.o src/mash/MinHashHeap.cpp
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/MurmurHash3.o src/mash/MurmurHash3.cpp
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/mash.o src/mash/mash.cpp
In file included from /usr/include/c++/7/vector:69:0,
from src/mash/HashList.h:11,
from src/mash/HashSet.h:10,
from src/mash/HashSet.cpp:7:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<long long unsigned int>::iterator {aka __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from src/mash/HashList.h:11,
from src/mash/HashSet.h:10,
from src/mash/HashSet.cpp:7:
/usr/include/c++/7/bits/stl_vector.h: In member function ‘void HashSet::toHashList(HashList&) const’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/Sketch.o src/mash/Sketch.cpp
In file included from /usr/include/c++/7/vector:69:0,
from src/mash/HashList.h:11,
from src/mash/MinHashHeap.h:4,
from src/mash/MinHashHeap.cpp:2:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<long long unsigned int>::iterator {aka __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<long long unsigned int>::iterator {aka __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >}’ changed in GCC 7.1
In file included from /usr/include/c++/7/queue:62:0,
from src/mash/HashPriorityQueue.h:11,
from src/mash/MinHashHeap.h:5,
from src/mash/MinHashHeap.cpp:2:
/usr/include/c++/7/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<std::less<long long unsigned int> >]’:
/usr/include/c++/7/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from src/mash/HashList.h:11,
from src/mash/MinHashHeap.h:4,
from src/mash/MinHashHeap.cpp:2:
/usr/include/c++/7/bits/stl_vector.h: In member function ‘void MinHashHeap::tryInsert(hash_u)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/sketchParameterSetup.o src/mash/sketchParameterSetup.cpp
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/capnp/MinHash.capnp.o src/mash/capnp/MinHash.capnp.c++
In file included from /usr/include/c++/7/vector:69:0,
from src/mash/Sketch.h:14,
from src/mash/Sketch.cpp:7:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Sketch::PositionHash}; _Tp = Sketch::PositionHash; _Alloc = std::allocator<Sketch::PositionHash>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<Sketch::PositionHash>::iterator {aka __gnu_cxx::__normal_iterator<Sketch::PositionHash*, std::vector<Sketch::PositionHash> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘Sketch::SketchOutput* loadCapnp(Sketch::SketchInput*)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Sketch::PositionHash*, std::vector<Sketch::PositionHash> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘void getMinHashPositions(std::vector<Sketch::PositionHash>&, char*, uint32_t, const Sketch::Parameters&, int)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Sketch::PositionHash*, std::vector<Sketch::PositionHash> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Sketch::PositionHash*, std::vector<Sketch::PositionHash> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function ‘Sketch::SketchOutput* sketchSequence(Sketch::SketchInput*)’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Sketch::PositionHash*, std::vector<Sketch::PositionHash> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Sketch::PositionHash*, std::vector<Sketch::PositionHash> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<Sketch::Reference*, std::vector<Sketch::Reference> >; _Tp = Sketch::Reference; _Alloc = std::allocator<Sketch::Reference>]’:
/usr/include/c++/7/bits/vector.tcc:630:7: note: parameter passing for argument of type ‘std::vector<Sketch::Reference>::iterator {aka __gnu_cxx::__normal_iterator<Sketch::Reference*, std::vector<Sketch::Reference> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:630:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Sketch::Reference*, std::vector<Sketch::Reference> >’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc:630:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Sketch::Reference*, std::vector<Sketch::Reference> >’ changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
from src/mash/Sketch.h:14,
from src/mash/Sketch.cpp:7:
/usr/include/c++/7/bits/stl_vector.h: In member function ‘void Sketch::useThreadOutput(Sketch::SketchOutput*)’:
/usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type ‘std::vector<Sketch::Reference>::iterator {aka __gnu_cxx::__normal_iterator<Sketch::Reference*, std::vector<Sketch::Reference> >}’ changed in GCC 7.1
_M_range_insert(__pos, __first, __last,
~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
std::__iterator_category(__first));
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Sketch::Reference*, std::vector<Sketch::Reference> >’ changed in GCC 7.1
g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Isrc -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o mash src/mash/Command.o src/mash/CommandBounds.o src/mash/CommandContain.o src/mash/CommandDistance.o src/mash/CommandScreen.o src/mash/CommandFind.o src/mash/CommandInfo.o src/mash/CommandPaste.o src/mash/CommandSketch.o src/mash/CommandList.o src/mash/hash.o src/mash/HashList.o src/mash/HashPriorityQueue.o src/mash/HashSet.o src/mash/MinHashHeap.o src/mash/MurmurHash3.o src/mash/mash.o src/mash/Sketch.o src/mash/sketchParameterSetup.o src/mash/capnp/MinHash.capnp.o -lkj -lcapnp -L/usr/lib -lgsl -lgslcblas -lstdc++ -lz -lm -lpthread -Wl,-z,relro -Wl,-z,now
ar -cr libmash.a src/mash/Command.o src/mash/CommandBounds.o src/mash/CommandContain.o src/mash/CommandDistance.o src/mash/CommandScreen.o src/mash/CommandFind.o src/mash/CommandInfo.o src/mash/CommandPaste.o src/mash/CommandSketch.o src/mash/CommandList.o src/mash/hash.o src/mash/HashList.o src/mash/HashPriorityQueue.o src/mash/HashSet.o src/mash/MinHashHeap.o src/mash/MurmurHash3.o src/mash/mash.o src/mash/Sketch.o src/mash/sketchParameterSetup.o src/mash/capnp/MinHash.capnp.o
ranlib libmash.a
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
sphinx-build doc/sphinx /<<PKGBUILDDIR>>/debian/sphinxdoc
Running Sphinx v1.6.4
making output directory...
loading pickled environment... not yet created
building [mo]: targets for 0 po files that are out of date
building [html]: targets for 5 source files that are out of date
updating environment: 5 added, 0 changed, 0 removed
reading sources... [ 20%] data
reading sources... [ 40%] distances
reading sources... [ 60%] index
reading sources... [ 80%] sketches
reading sources... [100%] tutorials
WARNING: /<<PKGBUILDDIR>>/doc/sphinx/tutorials.rst:9: (ERROR/3) Unknown directive type "download".
.. download::
/<<PKGBUILDDIR>>/doc/sphinx/tutorials.rst:10: WARNING: Explicit markup ends without a blank line; unexpected unindent.
WARNING: /<<PKGBUILDDIR>>/doc/sphinx/tutorials.rst:66: (ERROR/3) Unknown directive type "download".
.. download::
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [ 20%] data
writing output... [ 40%] distances
writing output... [ 60%] index
writing output... [ 80%] sketches
writing output... [100%] tutorials
generating indices... genindex
writing additional pages... search
copying images... [100%] logo_med.png
copying static files... WARNING: html_static_path entry u'/<<PKGBUILDDIR>>/doc/sphinx/_static' does not exist
done
copying extra files... done
dumping search index in English (code: en) ... done
dumping object inventory... done
build succeeded, 4 warnings.
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test -a -O--parallel
fakeroot debian/rules binary-arch
dh binary-arch --with autoreconf,sphinxdoc --parallel
dh_testroot -a -O--parallel
dh_prep -a -O--parallel
dh_auto_install -a -O--parallel
make -j4 install DESTDIR=/<<PKGBUILDDIR>>/debian/tmp AM_UPDATE_INFO_DIR=no
make[1]: Entering directory '/<<PKGBUILDDIR>>'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/usr/bin/
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/usr/lib/
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/usr/include/
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/usr/include/mash
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/usr/include/mash/capnp
cp `pwd`/mash /<<PKGBUILDDIR>>/debian/tmp/usr/bin/
cp `pwd`/libmash.a /<<PKGBUILDDIR>>/debian/tmp/usr/lib/
cp `pwd`/src/mash/*.h /<<PKGBUILDDIR>>/debian/tmp/usr/include/mash/
cp `pwd`/src/mash/capnp/MinHash.capnp.h /<<PKGBUILDDIR>>/debian/tmp/usr/include/mash/capnp/
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_install -a -O--parallel
dh_installdocs -a -O--parallel
dh_sphinxdoc -a -O--parallel
dh_sphinxdoc: Sphinx documentation not found
dh_installchangelogs -a -O--parallel
debian/rules override_dh_installman
make[1]: Entering directory '/<<PKGBUILDDIR>>'
mkdir -p /<<PKGBUILDDIR>>/debian/man
asciidoctor -a docdate='' -b manpage /<<PKGBUILDDIR>>/debian/man_src/*.adoc
cp /<<PKGBUILDDIR>>/debian/man_src/*.? /<<PKGBUILDDIR>>/debian/man
dh_installman --
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_perl -a -O--parallel
dh_link -a -O--parallel
dh_strip_nondeterminism -a -O--parallel
dh_compress -a -O--parallel
dh_fixperms -a -O--parallel
dh_missing -a -O--parallel
dh_strip -a -O--parallel
dh_makeshlibs -a -O--parallel
dh_shlibdeps -a -O--parallel
dpkg-shlibdeps: warning: debian/mash/usr/bin/mash contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mash/usr/bin/mash was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mash/usr/bin/mash was not linked against libkj-0.6.1.so (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mash/usr/bin/mash was not linked against libgslcblas.so.0 (it uses none of the library's symbols)
dh_installdeb -a -O--parallel
dh_gencontrol -a -O--parallel
dpkg-gencontrol: warning: Depends field of package libmash-dev: unknown substitution variable ${shlibs:Depends}
dh_md5sums -a -O--parallel
dh_builddeb -a -O--parallel
dpkg-deb: building package 'mash' in '../mash_2.0-2_armhf.deb'.
dpkg-deb: building package 'mash-dbgsym' in '../mash-dbgsym_2.0-2_armhf.deb'.
dpkg-deb: building package 'libmash-dev' in '../libmash-dev_2.0-2_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../mash_2.0-2_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build mash-2.0
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2017-10-07T05:00:32Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
mash_2.0-2_armhf.changes:
-------------------------
Format: 1.8
Date: Sun, 01 Oct 2017 18:22:09 +0100
Source: mash
Binary: mash libmash-dev mash-doc
Architecture: armhf
Version: 2.0-2
Distribution: buster-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Sascha Steinbiss <satta@debian.org>
Description:
libmash-dev - development headers and static library for Mash
mash - fast genome and metagenome distance estimation using MinHash
mash-doc - documentation for Mash
Changes:
mash (2.0-2) unstable; urgency=medium
.
* Specify required version of capnproto to avoid building with
problematic version (e.g. on sparc64).
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1b80a0066b1ac1a6dd8be578de1c4cb3 6353 science optional mash_2.0-2_armhf.buildinfo
1e7b08ce4d3e72316b3039dc7c056d37 118196 science optional mash_2.0-2_armhf.deb
+------------------------------------------------------------------------------+
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libmash-dev_2.0-2_armhf.deb
---------------------------
new debian package, version 2.0.
size 153416 bytes: control archive=1252 bytes.
464 bytes, 13 lines control
1698 bytes, 26 lines md5sums
Package: libmash-dev
Source: mash
Version: 2.0-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 872
Section: libdevel
Priority: optional
Homepage: https://mash.readthedocs.io
Description: development headers and static library for Mash
This package contains C++ development headers and a static library to
build custom programs utilizing Mash, a MinHash based genome distance
estimator.
drwxr-xr-x root/root 0 2017-10-01 17:22 ./
drwxr-xr-x root/root 0 2017-10-01 17:22 ./usr/
drwxr-xr-x root/root 0 2017-10-01 17:22 ./usr/include/
drwxr-xr-x root/root 0 2017-10-01 17:22 ./usr/include/mash/
-rw-r--r-- root/root 3491 2017-10-01 17:22 ./usr/include/mash/Command.h
-rw-r--r-- root/root 496 2017-10-01 17:22 ./usr/include/mash/CommandBounds.h
-rw-r--r-- root/root 2373 2017-10-01 17:22 ./usr/include/mash/CommandContain.h
-rw-r--r-- root/root 2876 2017-10-01 17:22 ./usr/include/mash/CommandDistance.h
-rw-r--r-- root/root 2373 2017-10-01 17:22 ./usr/include/mash/CommandFind.h
-rw-r--r-- root/root 621 2017-10-01 17:22 ./usr/include/mash/CommandInfo.h
-rw-r--r-- root/root 721 2017-10-01 17:22 ./usr/include/mash/CommandList.h
-rw-r--r-- root/root 517 2017-10-01 17:22 ./usr/include/mash/CommandPaste.h
-rw-r--r-- root/root 3413 2017-10-01 17:22 ./usr/include/mash/CommandScreen.h
-rw-r--r-- root/root 497 2017-10-01 17:22 ./usr/include/mash/CommandSketch.h
-rw-r--r-- root/root 1040 2017-10-01 17:22 ./usr/include/mash/HashList.h
-rw-r--r-- root/root 805 2017-10-01 17:22 ./usr/include/mash/HashPriorityQueue.h
-rw-r--r-- root/root 948 2017-10-01 17:22 ./usr/include/mash/HashSet.h
-rw-r--r-- root/root 1455 2017-10-01 17:22 ./usr/include/mash/MinHashHeap.h
-rw-r--r-- root/root 1109 2017-10-01 17:22 ./usr/include/mash/MurmurHash3.h
-rw-r--r-- root/root 7728 2017-10-01 17:22 ./usr/include/mash/Sketch.h
-rw-r--r-- root/root 1697 2017-10-01 17:22 ./usr/include/mash/ThreadPool.h
drwxr-xr-x root/root 0 2017-10-01 17:22 ./usr/include/mash/capnp/
-rw-r--r-- root/root 54508 2017-10-01 17:22 ./usr/include/mash/capnp/MinHash.capnp.h
-rw-r--r-- root/root 565 2017-10-01 17:22 ./usr/include/mash/hash.h
-rw-r--r-- root/root 12437 2017-10-01 17:22 ./usr/include/mash/kseq.h
-rw-r--r-- root/root 301 2017-10-01 17:22 ./usr/include/mash/memcpyLink.h
-rw-r--r-- root/root 678 2017-10-01 17:22 ./usr/include/mash/sketchParameterSetup.h
-rw-r--r-- root/root 292 2017-10-01 17:22 ./usr/include/mash/version.h
drwxr-xr-x root/root 0 2017-10-01 17:22 ./usr/lib/
-rw-r--r-- root/root 751474 2017-10-01 17:22 ./usr/lib/libmash.a
drwxr-xr-x root/root 0 2017-10-01 17:22 ./usr/share/
drwxr-xr-x root/root 0 2017-10-01 17:22 ./usr/share/doc/
drwxr-xr-x root/root 0 2017-10-01 17:22 ./usr/share/doc/libmash-dev/
-rw-r--r-- root/root 584 2017-10-01 17:22 ./usr/share/doc/libmash-dev/changelog.Debian.gz
-rw-r--r-- root/root 15529 2017-10-01 09:25 ./usr/share/doc/libmash-dev/copyright
mash-dbgsym_2.0-2_armhf.deb
---------------------------
new debian package, version 2.0.
size 2312942 bytes: control archive=450 bytes.
355 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: mash-dbgsym
Source: mash
Version: 2.0-2
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 2339
Depends: mash (= 2.0-2)
Section: debug
Priority: optional
Description: debug symbols for mash
Build-Ids: 13058657052285233ca3d6a45b9dc5a2780864c0
drwxr-xr-x root/root 0 2017-10-01 17:22 ./
drwxr-xr-x root/root 0 2017-10-01 17:22 ./usr/
drwxr-xr-x root/root 0 2017-10-01 17:22 ./usr/lib/
drwxr-xr-x root/root 0 2017-10-01 17:22 ./usr/lib/debug/
drwxr-xr-x root/root 0 2017-10-01 17:22 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2017-10-01 17:22 ./usr/lib/debug/.build-id/13/
-rw-r--r-- root/root 2384388 2017-10-01 17:22 ./usr/lib/debug/.build-id/13/058657052285233ca3d6a45b9dc5a2780864c0.debug
drwxr-xr-x root/root 0 2017-10-01 17:22 ./usr/share/
drwxr-xr-x root/root 0 2017-10-01 17:22 ./usr/share/doc/
lrwxrwxrwx root/root 0 2017-10-01 17:22 ./usr/share/doc/mash-dbgsym -> mash
mash_2.0-2_armhf.deb
--------------------
new debian package, version 2.0.
size 118196 bytes: control archive=1064 bytes.
1017 bytes, 18 lines control
591 bytes, 9 lines md5sums
Package: mash
Version: 2.0-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 337
Depends: libc6 (>= 2.4), libcapnp-0.6.1, libgcc1 (>= 1:3.5), libgsl23, libgslcblas0, libstdc++6 (>= 5.2), zlib1g (>= 1:1.1.4)
Section: science
Priority: optional
Homepage: https://mash.readthedocs.io
Description: fast genome and metagenome distance estimation using MinHash
Mash uses MinHash locality-sensitive hashing to reduce large biosequences to
a representative sketch and rapidly estimate pairwise distances between
genomes or metagenomes. Mash sketch databases effectively delineate known
species boundaries, allow construction of approximate phylogenies, and can be
searched in seconds using assembled genomes or raw sequencing runs from
Illumina, Pacific Biosciences, and Oxford Nanopore.
For metagenomics, Mash scales to thousands of samples and can replicate Human
Microbiome Project and Global Ocean Survey results in a fraction of the time.
drwxr-xr-x root/root 0 2017-10-01 17:22 ./
drwxr-xr-x root/root 0 2017-10-01 17:22 ./usr/
drwxr-xr-x root/root 0 2017-10-01 17:22 ./usr/bin/
-rwxr-xr-x root/root 308744 2017-10-01 17:22 ./usr/bin/mash
drwxr-xr-x root/root 0 2017-10-01 17:22 ./usr/share/
drwxr-xr-x root/root 0 2017-10-01 17:22 ./usr/share/doc/
drwxr-xr-x root/root 0 2017-10-01 17:22 ./usr/share/doc/mash/
-rw-r--r-- root/root 584 2017-10-01 17:22 ./usr/share/doc/mash/changelog.Debian.gz
-rw-r--r-- root/root 15529 2017-10-01 09:25 ./usr/share/doc/mash/copyright
drwxr-xr-x root/root 0 2017-10-01 17:22 ./usr/share/man/
drwxr-xr-x root/root 0 2017-10-01 17:22 ./usr/share/man/man1/
-rw-r--r-- root/root 1673 2017-10-01 17:22 ./usr/share/man/man1/mash-dist.1.gz
-rw-r--r-- root/root 565 2017-10-01 17:22 ./usr/share/man/man1/mash-info.1.gz
-rw-r--r-- root/root 455 2017-10-01 17:22 ./usr/share/man/man1/mash-paste.1.gz
-rw-r--r-- root/root 1111 2017-10-01 17:22 ./usr/share/man/man1/mash-screen.1.gz
-rw-r--r-- root/root 1710 2017-10-01 17:22 ./usr/share/man/man1/mash-sketch.1.gz
-rw-r--r-- root/root 691 2017-10-01 17:22 ./usr/share/man/man1/mash.1.gz
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Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
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| Summary |
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Build Architecture: armhf
Build-Space: 86276
Build-Time: 245
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 587
Job: mash_2.0-2
Machine Architecture: armhf
Package: mash
Package-Time: 886
Source-Version: 2.0-2
Space: 86276
Status: successful
Version: 2.0-2
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Finished at 2017-10-07T05:00:32Z
Build needed 00:14:46, 86276k disc space