mash →
1.1.1-2 →
armhf → 2017-05-29 15:16:17
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-03
+==============================================================================+
| mash 1.1.1-2 (armhf) Mon, 29 May 2017 14:56:22 +0000 |
+==============================================================================+
Package: mash
Version: 1.1.1-2
Source Version: 1.1.1-2
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-e9de40f1-f474-4ef4-aa30-76a4e833edfa' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private stretch-staging/main Sources [9730 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf Packages [11.7 MB]
Fetched 21.4 MB in 23s (898 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'mash' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/mash.git
Please use:
git clone https://anonscm.debian.org/git/debian-med/mash.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 6822 kB of source archives.
Get:1 http://172.17.0.1/private stretch-staging/main mash 1.1.1-2 (dsc) [1781 B]
Get:2 http://172.17.0.1/private stretch-staging/main mash 1.1.1-2 (tar) [4662 kB]
Get:3 http://172.17.0.1/private stretch-staging/main mash 1.1.1-2 (diff) [2158 kB]
Fetched 6822 kB in 1s (5859 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/mash-ioxGNE/mash-1.1.1' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/mash-ioxGNE' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-sNuLAp/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-sNuLAp/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-sNuLAp/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-sNuLAp/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-sNuLAp/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-sNuLAp/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-sNuLAp/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-sNuLAp/apt_archive ./ Packages [433 B]
Fetched 2109 B in 0s (3098 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
fuse2fs gnupg-l10n kbd libfuse2 manpages netbase psmisc
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 770 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-sNuLAp/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [770 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 770 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 13276 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 9), capnproto, libcapnp-dev, libgsl-dev, dh-autoreconf, zlib1g-dev, python-sphinx, libjs-mathjax, asciidoctor
Filtered Build-Depends: debhelper (>= 9), capnproto, libcapnp-dev, libgsl-dev, dh-autoreconf, zlib1g-dev, python-sphinx, libjs-mathjax, asciidoctor
dpkg-deb: building package 'sbuild-build-depends-mash-dummy' in '/<<BUILDDIR>>/resolver-sNuLAp/apt_archive/sbuild-build-depends-mash-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-mash-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-sNuLAp/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-sNuLAp/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-sNuLAp/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-sNuLAp/apt_archive ./ Sources [549 B]
Get:5 copy:/<<BUILDDIR>>/resolver-sNuLAp/apt_archive ./ Packages [631 B]
Fetched 2513 B in 0s (3658 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install mash build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
fuse2fs gnupg-l10n kbd libfuse2 manpages netbase psmisc
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
asciidoctor autoconf automake autopoint autotools-dev bsdmainutils
ca-certificates capnproto debhelper dh-autoreconf dh-strip-nondeterminism
docutils-common file fonts-mathjax gettext gettext-base groff-base
intltool-debian libarchive-zip-perl libbsd0 libcapnp-0.5.3 libcapnp-dev
libcroco3 libexpat1 libffi6 libfile-stripnondeterminism-perl libglib2.0-0
libgsl-dev libgsl2 libicu57 libjs-jquery libjs-mathjax libjs-sphinxdoc
libjs-underscore libmagic-mgc libmagic1 libpipeline1 libpython-stdlib
libpython2.7-minimal libpython2.7-stdlib libruby2.3 libsigsegv2 libssl1.0.2
libssl1.1 libtimedate-perl libtool libunistring0 libxml2 libyaml-0-2 m4
man-db mime-support openssl po-debconf python python-alabaster python-babel
python-babel-localedata python-docutils python-imagesize python-jinja2
python-markupsafe python-minimal python-pkg-resources python-pygments
python-roman python-six python-sphinx python-tz python2.7 python2.7-minimal
rake ruby ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert
ruby-test-unit ruby2.3 rubygems-integration sgml-base sphinx-common xml-core
zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff
gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html
fonts-mathjax-extras fonts-stix libjs-mathjax-doc libtool-doc gfortran
| fortran95-compiler gcj-jdk m4-doc less www-browser libmail-box-perl
python-doc python-tk fonts-linuxlibertine | ttf-linux-libertine
texlive-lang-french texlive-latex-base texlive-latex-recommended
python-jinja2-doc python-setuptools ttf-bitstream-vera
python-sphinx-rtd-theme dvipng texlive-latex-extra texlive-fonts-recommended
texlive-generic-extra sphinx-doc python2.7-doc binfmt-support ri ruby-dev
bundler sgml-base-doc
Recommended packages:
curl | wget | lynx-cur libglib2.0-data shared-mime-info xdg-user-dirs
javascript-common libltdl-dev libmail-sendmail-perl docutils-doc
libpaper-utils python-pil python-chardet zip fonts-lato
The following NEW packages will be installed:
asciidoctor autoconf automake autopoint autotools-dev bsdmainutils
ca-certificates capnproto debhelper dh-autoreconf dh-strip-nondeterminism
docutils-common file fonts-mathjax gettext gettext-base groff-base
intltool-debian libarchive-zip-perl libbsd0 libcapnp-0.5.3 libcapnp-dev
libcroco3 libexpat1 libffi6 libfile-stripnondeterminism-perl libglib2.0-0
libgsl-dev libgsl2 libicu57 libjs-jquery libjs-mathjax libjs-sphinxdoc
libjs-underscore libmagic-mgc libmagic1 libpipeline1 libpython-stdlib
libpython2.7-minimal libpython2.7-stdlib libruby2.3 libsigsegv2 libssl1.0.2
libssl1.1 libtimedate-perl libtool libunistring0 libxml2 libyaml-0-2 m4
man-db mime-support openssl po-debconf python python-alabaster python-babel
python-babel-localedata python-docutils python-imagesize python-jinja2
python-markupsafe python-minimal python-pkg-resources python-pygments
python-roman python-six python-sphinx python-tz python2.7 python2.7-minimal
rake ruby ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert
ruby-test-unit ruby2.3 rubygems-integration sbuild-build-depends-mash-dummy
sgml-base sphinx-common xml-core zlib1g-dev
0 upgraded, 85 newly installed, 0 to remove and 0 not upgraded.
Need to get 45.5 MB/45.5 MB of archives.
After this operation, 194 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-sNuLAp/apt_archive ./ sbuild-build-depends-mash-dummy 0.invalid.0 [832 B]
Get:2 http://172.17.0.1/private stretch-staging/main armhf groff-base armhf 1.22.3-9 [1005 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf libbsd0 armhf 0.8.3-1 [89.0 kB]
Get:4 http://172.17.0.1/private stretch-staging/main armhf bsdmainutils armhf 9.0.12+nmu1 [178 kB]
Get:5 http://172.17.0.1/private stretch-staging/main armhf libpipeline1 armhf 1.4.1-2 [23.7 kB]
Get:6 http://172.17.0.1/private stretch-staging/main armhf man-db armhf 2.7.6.1-2 [1014 kB]
Get:7 http://172.17.0.1/private stretch-staging/main armhf libpython2.7-minimal armhf 2.7.13-2 [389 kB]
Get:8 http://172.17.0.1/private stretch-staging/main armhf python2.7-minimal armhf 2.7.13-2 [1178 kB]
Get:9 http://172.17.0.1/private stretch-staging/main armhf python-minimal armhf 2.7.13-2 [40.5 kB]
Get:10 http://172.17.0.1/private stretch-staging/main armhf mime-support all 3.60 [36.7 kB]
Get:11 http://172.17.0.1/private stretch-staging/main armhf libexpat1 armhf 2.2.0-2 [62.2 kB]
Get:12 http://172.17.0.1/private stretch-staging/main armhf libssl1.1 armhf 1.1.0e-2 [1102 kB]
Get:13 http://172.17.0.1/private stretch-staging/main armhf libpython2.7-stdlib armhf 2.7.13-2 [1827 kB]
Get:14 http://172.17.0.1/private stretch-staging/main armhf python2.7 armhf 2.7.13-2 [285 kB]
Get:15 http://172.17.0.1/private stretch-staging/main armhf libpython-stdlib armhf 2.7.13-2 [20.0 kB]
Get:16 http://172.17.0.1/private stretch-staging/main armhf python armhf 2.7.13-2 [154 kB]
Get:17 http://172.17.0.1/private stretch-staging/main armhf sgml-base all 1.29 [14.8 kB]
Get:18 http://172.17.0.1/private stretch-staging/main armhf libssl1.0.2 armhf 1.0.2k-1 [893 kB]
Get:19 http://172.17.0.1/private stretch-staging/main armhf libmagic-mgc armhf 1:5.30-1 [222 kB]
Get:20 http://172.17.0.1/private stretch-staging/main armhf libmagic1 armhf 1:5.30-1 [105 kB]
Get:21 http://172.17.0.1/private stretch-staging/main armhf file armhf 1:5.30-1 [63.4 kB]
Get:22 http://172.17.0.1/private stretch-staging/main armhf gettext-base armhf 0.19.8.1-2 [116 kB]
Get:23 http://172.17.0.1/private stretch-staging/main armhf libicu57 armhf 57.1-5 [7427 kB]
Get:24 http://172.17.0.1/private stretch-staging/main armhf libxml2 armhf 2.9.4+dfsg1-2.2 [806 kB]
Get:25 http://172.17.0.1/private stretch-staging/main armhf openssl armhf 1.1.0e-2 [705 kB]
Get:26 http://172.17.0.1/private stretch-staging/main armhf ca-certificates all 20161130+nmu1 [196 kB]
Get:27 http://172.17.0.1/private stretch-staging/main armhf rubygems-integration all 1.11 [4994 B]
Get:28 http://172.17.0.1/private stretch-staging/main armhf rake all 10.5.0-2 [49.4 kB]
Get:29 http://172.17.0.1/private stretch-staging/main armhf ruby-did-you-mean all 1.0.0-2 [11.2 kB]
Get:30 http://172.17.0.1/private stretch-staging/main armhf ruby-minitest all 5.9.0-1 [51.1 kB]
Get:31 http://172.17.0.1/private stretch-staging/main armhf ruby-net-telnet all 0.1.1-2 [12.5 kB]
Get:32 http://172.17.0.1/private stretch-staging/main armhf ruby-power-assert all 0.3.0-1 [7902 B]
Get:33 http://172.17.0.1/private stretch-staging/main armhf ruby-test-unit all 3.1.7-2 [69.6 kB]
Get:34 http://172.17.0.1/private stretch-staging/main armhf libyaml-0-2 armhf 0.1.7-2 [39.9 kB]
Get:35 http://172.17.0.1/private stretch-staging/main armhf libruby2.3 armhf 2.3.3-1 [2864 kB]
Get:36 http://172.17.0.1/private stretch-staging/main armhf ruby2.3 armhf 2.3.3-1 [186 kB]
Get:37 http://172.17.0.1/private stretch-staging/main armhf ruby armhf 1:2.3.3 [10.8 kB]
Get:38 http://172.17.0.1/private stretch-staging/main armhf asciidoctor all 1.5.4-2 [163 kB]
Get:39 http://172.17.0.1/private stretch-staging/main armhf libsigsegv2 armhf 2.10-5 [28.4 kB]
Get:40 http://172.17.0.1/private stretch-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:41 http://172.17.0.1/private stretch-staging/main armhf autoconf all 2.69-10 [338 kB]
Get:42 http://172.17.0.1/private stretch-staging/main armhf autotools-dev all 20161112.1 [73.4 kB]
Get:43 http://172.17.0.1/private stretch-staging/main armhf automake all 1:1.15-6 [733 kB]
Get:44 http://172.17.0.1/private stretch-staging/main armhf autopoint all 0.19.8.1-2 [433 kB]
Get:45 http://172.17.0.1/private stretch-staging/main armhf libcapnp-0.5.3 armhf 0.5.3-2 [507 kB]
Get:46 http://172.17.0.1/private stretch-staging/main armhf capnproto armhf 0.5.3-2 [195 kB]
Get:47 http://172.17.0.1/private stretch-staging/main armhf libtool all 2.4.6-2 [545 kB]
Get:48 http://172.17.0.1/private stretch-staging/main armhf dh-autoreconf all 14 [15.9 kB]
Get:49 http://172.17.0.1/private stretch-staging/main armhf libarchive-zip-perl all 1.59-1 [95.5 kB]
Get:50 http://172.17.0.1/private stretch-staging/main armhf libfile-stripnondeterminism-perl all 0.034-1 [16.4 kB]
Get:51 http://172.17.0.1/private stretch-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:52 http://172.17.0.1/private stretch-staging/main armhf dh-strip-nondeterminism all 0.034-1 [10.5 kB]
Get:53 http://172.17.0.1/private stretch-staging/main armhf libglib2.0-0 armhf 2.50.3-2 [2527 kB]
Get:54 http://172.17.0.1/private stretch-staging/main armhf libcroco3 armhf 0.6.11-3 [131 kB]
Get:55 http://172.17.0.1/private stretch-staging/main armhf libunistring0 armhf 0.9.6+really0.9.3-0.1 [252 kB]
Get:56 http://172.17.0.1/private stretch-staging/main armhf gettext armhf 0.19.8.1-2 [1434 kB]
Get:57 http://172.17.0.1/private stretch-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:58 http://172.17.0.1/private stretch-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:59 http://172.17.0.1/private stretch-staging/main armhf debhelper all 10.2.5 [961 kB]
Get:60 http://172.17.0.1/private stretch-staging/main armhf xml-core all 0.17 [23.2 kB]
Get:61 http://172.17.0.1/private stretch-staging/main armhf docutils-common all 0.13.1+dfsg-2 [200 kB]
Get:62 http://172.17.0.1/private stretch-staging/main armhf fonts-mathjax all 2.7.0-2 [960 kB]
Get:63 http://172.17.0.1/private stretch-staging/main armhf libcapnp-dev armhf 0.5.3-2 [827 kB]
Get:64 http://172.17.0.1/private stretch-staging/main armhf libgsl2 armhf 2.3+dfsg-1 [722 kB]
Get:65 http://172.17.0.1/private stretch-staging/main armhf libgsl-dev armhf 2.3+dfsg-1 [847 kB]
Get:66 http://172.17.0.1/private stretch-staging/main armhf libjs-jquery all 3.1.1-2 [154 kB]
Get:67 http://172.17.0.1/private stretch-staging/main armhf libjs-underscore all 1.8.3~dfsg-1 [63.8 kB]
Get:68 http://172.17.0.1/private stretch-staging/main armhf libjs-sphinxdoc all 1.4.9-2 [69.5 kB]
Get:69 http://172.17.0.1/private stretch-staging/main armhf python-babel-localedata all 2.3.4+dfsg.1-2 [3402 kB]
Get:70 http://172.17.0.1/private stretch-staging/main armhf python-pkg-resources all 33.1.1-1 [166 kB]
Get:71 http://172.17.0.1/private stretch-staging/main armhf python-tz all 2016.7-0.3 [33.7 kB]
Get:72 http://172.17.0.1/private stretch-staging/main armhf python-babel all 2.3.4+dfsg.1-2 [82.5 kB]
Get:73 http://172.17.0.1/private stretch-staging/main armhf python-roman all 2.0.0-2 [8130 B]
Get:74 http://172.17.0.1/private stretch-staging/main armhf python-docutils all 0.13.1+dfsg-2 [373 kB]
Get:75 http://172.17.0.1/private stretch-staging/main armhf python-imagesize all 0.7.1-1 [3814 B]
Get:76 http://172.17.0.1/private stretch-staging/main armhf python-markupsafe armhf 0.23-3 [14.2 kB]
Get:77 http://172.17.0.1/private stretch-staging/main armhf python-jinja2 all 2.8-1 [111 kB]
Get:78 http://172.17.0.1/private stretch-staging/main armhf python-pygments all 2.2.0+dfsg-1 [590 kB]
Get:79 http://172.17.0.1/private stretch-staging/main armhf python-six all 1.10.0-3 [14.4 kB]
Get:80 http://172.17.0.1/private stretch-staging/main armhf python-alabaster all 0.7.8-1 [18.4 kB]
Get:81 http://172.17.0.1/private stretch-staging/main armhf sphinx-common all 1.4.9-2 [350 kB]
Get:82 http://172.17.0.1/private stretch-staging/main armhf python-sphinx all 1.4.9-2 [434 kB]
Get:83 http://172.17.0.1/private stretch-staging/main armhf zlib1g-dev armhf 1:1.2.8.dfsg-5 [198 kB]
Get:84 http://172.17.0.1/private stretch-staging/main armhf libjs-mathjax all 2.7.0-2 [5603 kB]
debconf: delaying package configuration, since apt-utils is not installed
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update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
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Updating certificates in /etc/ssl/certs...
166 added, 0 removed; done.
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No schema files found: doing nothing.
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Not building database; man-db/auto-update is not 'true'.
Setting up python (2.7.13-2) ...
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Setting up python-tz (2016.7-0.3) ...
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Setting up python-alabaster (0.7.8-1) ...
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Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up python-six (1.10.0-3) ...
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Setting up po-debconf (1.0.20) ...
Setting up python-jinja2 (2.8-1) ...
Setting up python-babel (2.3.4+dfsg.1-2) ...
update-alternatives: using /usr/bin/pybabel-python2 to provide /usr/bin/pybabel (pybabel) in auto mode
Processing triggers for sgml-base (1.29) ...
Setting up docutils-common (0.13.1+dfsg-2) ...
Processing triggers for sgml-base (1.29) ...
Setting up python-docutils (0.13.1+dfsg-2) ...
update-alternatives: using /usr/share/docutils/scripts/python2/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2html4 to provide /usr/bin/rst2html4 (rst2html4) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2html5 to provide /usr/bin/rst2html5 (rst2html5) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode
Setting up python-sphinx (1.4.9-2) ...
Setting up rake (10.5.0-2) ...
Setting up libruby2.3:armhf (2.3.3-1) ...
Setting up dh-autoreconf (14) ...
Setting up ruby2.3 (2.3.3-1) ...
Setting up dh-strip-nondeterminism (0.034-1) ...
Setting up ruby (1:2.3.3) ...
Setting up debhelper (10.2.5) ...
Setting up asciidoctor (1.5.4-2) ...
Setting up sbuild-build-depends-mash-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.24-10) ...
Processing triggers for ca-certificates (20161130+nmu1) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.2-armmp armhf (armv7l)
Toolchain package versions: binutils_2.28-5 dpkg-dev_1.18.24 g++-6_6.3.0-14+rpi1 gcc-6_6.3.0-14+rpi1 libc6-dev_2.24-10 libstdc++-6-dev_6.3.0-14+rpi1 libstdc++6_6.3.0-14+rpi1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: adduser_3.115 apt_1.4.4 asciidoctor_1.5.4-2 autoconf_2.69-10 automake_1:1.15-6 autopoint_0.19.8.1-2 autotools-dev_20161112.1 base-files_9.9+rpi1 base-passwd_3.5.43 bash_4.4-5 binutils_2.28-5 bsdmainutils_9.0.12+nmu1 bsdutils_1:2.29.2-1 build-essential_12.3 bzip2_1.0.6-8.1 ca-certificates_20161130+nmu1 capnproto_0.5.3-2 coreutils_8.26-3 cpio_2.11+dfsg-6 cpp_4:6.3.0-4 cpp-6_6.3.0-14+rpi1 dash_0.5.8-2.4 debconf_1.5.61 debfoster_2.7-2.1 debhelper_10.2.5 debianutils_4.8.1 dh-autoreconf_14 dh-strip-nondeterminism_0.034-1 diffutils_1:3.5-3 dmsetup_2:1.02.137-2 docutils-common_0.13.1+dfsg-2 dpkg_1.18.24 dpkg-dev_1.18.24 e2fslibs_1.43.4-2 e2fsprogs_1.43.4-2 fakeroot_1.21-3.1 file_1:5.30-1 findutils_4.6.0+git+20161106-2 fonts-mathjax_2.7.0-2 fuse2fs_1.43.4-2 g++_4:6.3.0-4 g++-6_6.3.0-14+rpi1 gcc_4:6.3.0-4 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-14 gcc-6_6.3.0-14+rpi1 gcc-6-base_6.3.0-14+rpi1 gettext_0.19.8.1-2 gettext-base_0.19.8.1-2 gnupg_2.1.18-6 gnupg-agent_2.1.18-6 gnupg-l10n_2.1.18-6 gpgv_2.1.18-6 grep_2.27-2 groff-base_1.22.3-9 gzip_1.6-5 hostname_3.18 init_1.48 init-system-helpers_1.48 initscripts_2.88dsf-59.9 insserv_1.14.0-5.4 intltool-debian_0.35.0+20060710.4 kbd_2.0.3-2 klibc-utils_2.0.4-9+rpi1 kmod_23-2 libacl1_2.2.52-3 libapparmor1_2.11.0-3 libapt-pkg5.0_1.4.4 libarchive-zip-perl_1.59-1 libasan3_6.3.0-14+rpi1 libassuan0_2.4.3-2 libatomic1_6.3.0-14+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.6.7-2 libaudit1_1:2.6.7-2 libblkid1_2.29.2-1 libbsd0_0.8.3-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.24-10 libc-dev-bin_2.24-10 libc6_2.24-10 libc6-dev_2.24-10 libcap-ng0_0.7.7-3 libcap2_1:2.25-1 libcap2-bin_1:2.25-1 libcapnp-0.5.3_0.5.3-2 libcapnp-dev_0.5.3-2 libcc1-0_6.3.0-14+rpi1 libcomerr2_1.43.4-2 libcroco3_0.6.11-3 libcryptsetup4_2:1.7.3-4 libdb5.3_5.3.28-12 libdbus-1-3_1.10.18-1 libdebconfclient0_0.227 libdevmapper1.02.1_2:1.02.137-2 libdpkg-perl_1.18.24 libdrm2_2.4.74-1 libexpat1_2.2.0-2 libfakeroot_1.21-3.1 libfdisk1_2.29.2-1 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.034-1 libfuse2_2.9.7-1 libgc1c2_1:7.4.2-8 libgcc-6-dev_6.3.0-14+rpi1 libgcc1_1:6.3.0-14+rpi1 libgcrypt20_1.7.6-1 libgdbm3_1.8.3-14 libglib2.0-0_2.50.3-2 libgmp10_2:6.1.2+dfsg-1 libgomp1_6.3.0-14+rpi1 libgpg-error0_1.26-2 libgsl-dev_2.3+dfsg-1 libgsl2_2.3+dfsg-1 libicu57_57.1-5 libidn11_1.33-1 libip4tc0_1.6.0+snapshot20161117-6 libisl15_0.18-1 libjs-jquery_3.1.1-2 libjs-mathjax_2.7.0-2 libjs-sphinxdoc_1.4.9-2 libjs-underscore_1.8.3~dfsg-1 libklibc_2.0.4-9+rpi1 libkmod2_23-2 libksba8_1.3.5-2 liblz4-1_0.0~r131-2 liblzma5_5.2.2-1.2 libmagic-mgc_1:5.30-1 libmagic1_1:5.30-1 libmount1_2.29.2-1 libmpc3_1.0.3-1 libmpfr4_3.1.5-1 libncurses5_6.0+20161126-1 libncursesw5_6.0+20161126-1 libnpth0_1.3-1 libpam-modules_1.1.8-3.5 libpam-modules-bin_1.1.8-3.5 libpam-runtime_1.1.8-3.5 libpam0g_1.1.8-3.5 libpcre3_2:8.39-3 libperl5.24_5.24.1-2 libpipeline1_1.4.1-2 libpng12-0_1.2.54-6 libprocps6_2:3.3.12-3 libpython-stdlib_2.7.13-2 libpython2.7-minimal_2.7.13-2 libpython2.7-stdlib_2.7.13-2 libreadline7_7.0-3 libruby2.3_2.3.3-1 libseccomp2_2.3.1-2.1 libselinux1_2.6-3 libsemanage-common_2.6-2 libsemanage1_2.6-2 libsepol1_2.6-2 libsigsegv2_2.10-5 libsmartcols1_2.29.2-1 libsqlite3-0_3.16.2-3 libss2_1.43.4-2 libssl1.0.2_1.0.2k-1 libssl1.1_1.1.0e-2 libstdc++-6-dev_6.3.0-14+rpi1 libstdc++6_6.3.0-14+rpi1 libsystemd0_232-23 libtimedate-perl_2.3000-2 libtinfo5_6.0+20161126-1 libtool_2.4.6-2 libubsan0_6.3.0-14+rpi1 libudev1_232-23 libunistring0_0.9.6+really0.9.3-0.1 libusb-0.1-4_2:0.1.12-30 libustr-1.0-1_1.0.4-6 libuuid1_2.29.2-1 libxml2_2.9.4+dfsg1-2.2 libyaml-0-2_0.1.7-2 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.4-4.1 lsb-base_9.20161125+rpi1 m4_1.4.18-1 make_4.1-9.1 makedev_2.3.1-93 man-db_2.7.6.1-2 manpages_4.10-2 mawk_1.3.3-17 mime-support_3.60 mount_2.29.2-1 multiarch-support_2.24-10 ncurses-base_6.0+20161126-1 ncurses-bin_6.0+20161126-1 netbase_5.4 openssl_1.1.0e-2 passwd_1:4.4-4.1 patch_2.7.5-1 perl_5.24.1-2 perl-base_5.24.1-2 perl-modules-5.24_5.24.1-2 pinentry-curses_1.0.0-2 po-debconf_1.0.20 procps_2:3.3.12-3 psmisc_22.21-2.1 python_2.7.13-2 python-alabaster_0.7.8-1 python-babel_2.3.4+dfsg.1-2 python-babel-localedata_2.3.4+dfsg.1-2 python-docutils_0.13.1+dfsg-2 python-imagesize_0.7.1-1 python-jinja2_2.8-1 python-markupsafe_0.23-3 python-minimal_2.7.13-2 python-pkg-resources_33.1.1-1 python-pygments_2.2.0+dfsg-1 python-roman_2.0.0-2 python-six_1.10.0-3 python-sphinx_1.4.9-2 python-tz_2016.7-0.3 python2.7_2.7.13-2 python2.7-minimal_2.7.13-2 rake_10.5.0-2 raspbian-archive-keyring_20120528.2 readline-common_7.0-3 ruby_1:2.3.3 ruby-did-you-mean_1.0.0-2 ruby-minitest_5.9.0-1 ruby-net-telnet_0.1.1-2 ruby-power-assert_0.3.0-1 ruby-test-unit_3.1.7-2 ruby2.3_2.3.3-1 rubygems-integration_1.11 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-mash-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.9 sgml-base_1.29 sphinx-common_1.4.9-2 startpar_0.59-3.1 systemd_232-23 systemd-sysv_232-23 sysv-rc_2.88dsf-59.9 sysvinit-utils_2.88dsf-59.9 tar_1.29b-1.1 tzdata_2017b-1 udev_232-23 util-linux_2.29.2-1 xml-core_0.17 xz-utils_5.2.2-1.2 zlib1g_1:1.2.8.dfsg-5 zlib1g-dev_1:1.2.8.dfsg-5
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Wed May 24 09:03:30 2017 UTC
gpgv: using RSA key 8451F9178172E7E2DC73F79551F84A8FECCA7E09
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./mash_1.1.1-2.dsc
dpkg-source: info: extracting mash in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking mash_1.1.1.orig.tar.gz
dpkg-source: info: unpacking mash_1.1.1-2.debian.tar.xz
dpkg-source: info: applying hardening.patch
dpkg-source: info: applying use_debian_mathjax.patch
dpkg-source: info: applying drop_memcpy_wrapper.patch
dpkg-source: info: applying link_dynamically_against_capnp.patch
dpkg-source: info: applying parallel.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-e9de40f1-f474-4ef4-aa30-76a4e833edfa
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package mash
dpkg-buildpackage: info: source version 1.1.1-2
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build mash-1.1.1
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --with autoreconf,sphinxdoc --parallel
dh_testdir -O--parallel
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
rm -rf /<<PKGBUILDDIR>>/debian/sphinxdoc /<<PKGBUILDDIR>>/debian/man
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_autoreconf_clean -O--parallel
dh_clean -O--parallel
debian/rules build-arch
dh build-arch --with autoreconf,sphinxdoc --parallel
dh_testdir -a -O--parallel
dh_update_autotools_config -a -O--parallel
dh_autoreconf -a -O--parallel
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure -- --with-capnp=/usr --with-gsl=/usr --prefix=/<<PKGBUILDDIR>>/debian/tmp/usr
./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --libexecdir=\${prefix}/lib/arm-linux-gnueabihf --disable-maintainer-mode --disable-dependency-tracking --with-capnp=/usr --with-gsl=/usr --prefix=/<<PKGBUILDDIR>>/debian/tmp/usr
configure: WARNING: unrecognized options: --disable-silent-rules, --disable-maintainer-mode, --disable-dependency-tracking
checking for g++... g++
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking how to run the C++ preprocessor... g++ -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking zlib.h usability... yes
checking zlib.h presence... yes
checking for zlib.h... yes
checking for capnp... yes
checking capnp/common.h usability... yes
checking capnp/common.h presence... yes
checking for capnp/common.h... yes
checking gsl/gsl_cdf.h usability... yes
checking gsl/gsl_cdf.h presence... yes
checking for gsl/gsl_cdf.h... yes
configure: creating ./config.status
config.status: creating Makefile
configure: WARNING: unrecognized options: --disable-silent-rules, --disable-maintainer-mode, --disable-dependency-tracking
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_build
make -j4
make[2]: Entering directory '/<<PKGBUILDDIR>>'
cd src/mash/capnp;export PATH=/usr/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games;capnp compile -I /usr/include -oc++ MinHash.capnp
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Isrc -I/usr/include -I /usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/Command.o src/mash/Command.cpp
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Isrc -I/usr/include -I /usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/CommandBounds.o src/mash/CommandBounds.cpp
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Isrc -I/usr/include -I /usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/CommandContain.o src/mash/CommandContain.cpp
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Isrc -I/usr/include -I /usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/CommandDistance.o src/mash/CommandDistance.cpp
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Isrc -I/usr/include -I /usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/CommandFind.o src/mash/CommandFind.cpp
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Isrc -I/usr/include -I /usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/CommandInfo.o src/mash/CommandInfo.cpp
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Isrc -I/usr/include -I /usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/CommandPaste.o src/mash/CommandPaste.cpp
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Isrc -I/usr/include -I /usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/CommandSketch.o src/mash/CommandSketch.cpp
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Isrc -I/usr/include -I /usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/CommandList.o src/mash/CommandList.cpp
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Isrc -I/usr/include -I /usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/hash.o src/mash/hash.cpp
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Isrc -I/usr/include -I /usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/HashList.o src/mash/HashList.cpp
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Isrc -I/usr/include -I /usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/HashPriorityQueue.o src/mash/HashPriorityQueue.cpp
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Isrc -I/usr/include -I /usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/HashSet.o src/mash/HashSet.cpp
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Isrc -I/usr/include -I /usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/MinHashHeap.o src/mash/MinHashHeap.cpp
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Isrc -I/usr/include -I /usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/MurmurHash3.o src/mash/MurmurHash3.cpp
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Isrc -I/usr/include -I /usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/mash.o src/mash/mash.cpp
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Isrc -I/usr/include -I /usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/Sketch.o src/mash/Sketch.cpp
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Isrc -I/usr/include -I /usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/sketchParameterSetup.o src/mash/sketchParameterSetup.cpp
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Isrc -I/usr/include -I /usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/capnp/MinHash.capnp.o src/mash/capnp/MinHash.capnp.c++
g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Isrc -I/usr/include -I /usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o mash src/mash/Command.o src/mash/CommandBounds.o src/mash/CommandContain.o src/mash/CommandDistance.o src/mash/CommandFind.o src/mash/CommandInfo.o src/mash/CommandPaste.o src/mash/CommandSketch.o src/mash/CommandList.o src/mash/hash.o src/mash/HashList.o src/mash/HashPriorityQueue.o src/mash/HashSet.o src/mash/MinHashHeap.o src/mash/MurmurHash3.o src/mash/mash.o src/mash/Sketch.o src/mash/sketchParameterSetup.o src/mash/capnp/MinHash.capnp.o -lkj -lcapnp -L/usr/lib -lgsl -lgslcblas -lstdc++ -lz -lm -lpthread -Wl,-z,relro -Wl,-z,now
ar -cr libmash.a src/mash/Command.o src/mash/CommandBounds.o src/mash/CommandContain.o src/mash/CommandDistance.o src/mash/CommandFind.o src/mash/CommandInfo.o src/mash/CommandPaste.o src/mash/CommandSketch.o src/mash/CommandList.o src/mash/hash.o src/mash/HashList.o src/mash/HashPriorityQueue.o src/mash/HashSet.o src/mash/MinHashHeap.o src/mash/MurmurHash3.o src/mash/mash.o src/mash/Sketch.o src/mash/sketchParameterSetup.o src/mash/capnp/MinHash.capnp.o
ranlib libmash.a
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
sphinx-build doc/sphinx /<<PKGBUILDDIR>>/debian/sphinxdoc
Running Sphinx v1.4.9
making output directory...
loading pickled environment... not yet created
building [mo]: targets for 0 po files that are out of date
building [html]: targets for 5 source files that are out of date
updating environment: 5 added, 0 changed, 0 removed
reading sources... [ 20%] data
reading sources... [ 40%] distances
reading sources... [ 60%] index
reading sources... [ 80%] sketches
reading sources... [100%] tutorials
/<<PKGBUILDDIR>>/doc/sphinx/tutorials.rst:9: ERROR: Unknown directive type "download".
.. download::
/<<PKGBUILDDIR>>/doc/sphinx/tutorials.rst:10: WARNING: Explicit markup ends without a blank line; unexpected unindent.
/<<PKGBUILDDIR>>/doc/sphinx/tutorials.rst:66: ERROR: Unknown directive type "download".
.. download::
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [ 20%] data
writing output... [ 40%] distances
writing output... [ 60%] index
writing output... [ 80%] sketches
writing output... [100%] tutorials
generating indices... genindex
writing additional pages... search
copying images... [100%] logo_med.png
copying static files... WARNING: html_static_path entry u'/<<PKGBUILDDIR>>/doc/sphinx/_static' does not exist
done
copying extra files... done
dumping search index in English (code: en) ... done
dumping object inventory... done
build succeeded, 4 warnings.
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test -a -O--parallel
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch --with autoreconf,sphinxdoc --parallel
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--parallel
dh_prep -a -O--parallel
dh_auto_install -a -O--parallel
make -j4 install DESTDIR=/<<PKGBUILDDIR>>/debian/tmp AM_UPDATE_INFO_DIR=no
make[1]: Entering directory '/<<PKGBUILDDIR>>'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/usr/bin/
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/usr/lib/
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/usr/include/
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/usr/include/mash
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/usr/include/mash/capnp
cp `pwd`/mash /<<PKGBUILDDIR>>/debian/tmp/usr/bin/
cp `pwd`/libmash.a /<<PKGBUILDDIR>>/debian/tmp/usr/lib/
cp `pwd`/src/mash/*.h /<<PKGBUILDDIR>>/debian/tmp/usr/include/mash/
cp `pwd`/src/mash/capnp/MinHash.capnp.h /<<PKGBUILDDIR>>/debian/tmp/usr/include/mash/capnp/
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_install -a -O--parallel
dh_installdocs -a -O--parallel
dh_sphinxdoc -a -O--parallel
dh_sphinxdoc: Sphinx documentation not found
dh_installchangelogs -a -O--parallel
debian/rules override_dh_installman
make[1]: Entering directory '/<<PKGBUILDDIR>>'
mkdir -p /<<PKGBUILDDIR>>/debian/man
asciidoctor -a docdate='' -b manpage /<<PKGBUILDDIR>>/debian/man_src/*.adoc
cp /<<PKGBUILDDIR>>/debian/man_src/*.? /<<PKGBUILDDIR>>/debian/man
dh_installman --
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_perl -a -O--parallel
dh_link -a -O--parallel
dh_strip_nondeterminism -a -O--parallel
dh_compress -a -O--parallel
dh_fixperms -a -O--parallel
dh_strip -a -O--parallel
dh_makeshlibs -a -O--parallel
dh_shlibdeps -a -O--parallel
dpkg-shlibdeps: warning: debian/mash/usr/bin/mash contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mash/usr/bin/mash was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mash/usr/bin/mash was not linked against libgslcblas.so.0 (it uses none of the library's symbols)
dh_installdeb -a -O--parallel
dh_gencontrol -a -O--parallel
dpkg-gencontrol: warning: Depends field of package libmash-dev: unknown substitution variable ${shlibs:Depends}
dh_md5sums -a -O--parallel
dh_builddeb -a -O--parallel
dpkg-deb: building package 'libmash-dev' in '../libmash-dev_1.1.1-2_armhf.deb'.
dpkg-deb: building package 'mash-dbgsym' in '../mash-dbgsym_1.1.1-2_armhf.deb'.
dpkg-deb: building package 'mash' in '../mash_1.1.1-2_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../mash_1.1.1-2_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build mash-1.1.1
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2017-05-29T15:14:20Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
mash_1.1.1-2_armhf.changes:
---------------------------
Format: 1.8
Date: Wed, 24 May 2017 08:43:17 +0000
Source: mash
Binary: mash libmash-dev mash-doc
Architecture: armhf
Version: 1.1.1-2
Distribution: stretch-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Sascha Steinbiss <satta@debian.org>
Description:
libmash-dev - development headers and static library for Mash
mash - fast genome and metagenome distance estimation using MinHash
mash-doc - documentation for Mash
Closes: 863208
Changes:
mash (1.1.1-2) unstable; urgency=medium
.
* Fix parallel building FTBFS. Thanks to Adrian Bunk for the patch.
Closes: #863208
Checksums-Sha1:
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d4979a315d03d664f03aff3d7cd1ef45b33a3afe 6271 mash_1.1.1-2_armhf.buildinfo
f2ebba93dffc3828a07b722396f68237790f870a 106896 mash_1.1.1-2_armhf.deb
Checksums-Sha256:
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710419fd59deedbdd990c92ae22594cfb8097d3a9e6185e306212b28d2481898 1923812 mash-dbgsym_1.1.1-2_armhf.deb
cdc39c156271aac81b10763bfdf4522333fae7a8080a2bad0accb0a2d8af10b7 6271 mash_1.1.1-2_armhf.buildinfo
99df3124671788b6236057c75e6c28fd77f039dce72cfb19b292fa0c05909aba 106896 mash_1.1.1-2_armhf.deb
Files:
a902c81b73b4ed7eb63cb9a1a9fc31f4 138198 libdevel optional libmash-dev_1.1.1-2_armhf.deb
703bff55a2a3f8fc732d24b534b1750f 1923812 debug extra mash-dbgsym_1.1.1-2_armhf.deb
af0be72571240edad372ef6e53c8369b 6271 science optional mash_1.1.1-2_armhf.buildinfo
36bb61036b8b99d178dbcc45e000f6c7 106896 science optional mash_1.1.1-2_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
libmash-dev_1.1.1-2_armhf.deb
-----------------------------
new debian package, version 2.0.
size 138198 bytes: control archive=1226 bytes.
466 bytes, 13 lines control
1631 bytes, 25 lines md5sums
Package: libmash-dev
Source: mash
Version: 1.1.1-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 710
Section: libdevel
Priority: optional
Homepage: https://mash.readthedocs.io
Description: development headers and static library for Mash
This package contains C++ development headers and a static library to
build custom programs utilizing Mash, a MinHash based genome distance
estimator.
drwxr-xr-x root/root 0 2017-05-24 08:43 ./
drwxr-xr-x root/root 0 2017-05-24 08:43 ./usr/
drwxr-xr-x root/root 0 2017-05-24 08:43 ./usr/include/
drwxr-xr-x root/root 0 2017-05-24 08:43 ./usr/include/mash/
-rw-r--r-- root/root 3452 2017-05-24 08:43 ./usr/include/mash/Command.h
-rw-r--r-- root/root 457 2017-05-24 08:43 ./usr/include/mash/CommandBounds.h
-rw-r--r-- root/root 2334 2017-05-24 08:43 ./usr/include/mash/CommandContain.h
-rw-r--r-- root/root 2837 2017-05-24 08:43 ./usr/include/mash/CommandDistance.h
-rw-r--r-- root/root 2334 2017-05-24 08:43 ./usr/include/mash/CommandFind.h
-rw-r--r-- root/root 582 2017-05-24 08:43 ./usr/include/mash/CommandInfo.h
-rw-r--r-- root/root 682 2017-05-24 08:43 ./usr/include/mash/CommandList.h
-rw-r--r-- root/root 478 2017-05-24 08:43 ./usr/include/mash/CommandPaste.h
-rw-r--r-- root/root 458 2017-05-24 08:43 ./usr/include/mash/CommandSketch.h
-rw-r--r-- root/root 1040 2017-05-24 08:43 ./usr/include/mash/HashList.h
-rw-r--r-- root/root 805 2017-05-24 08:43 ./usr/include/mash/HashPriorityQueue.h
-rw-r--r-- root/root 948 2017-05-24 08:43 ./usr/include/mash/HashSet.h
-rw-r--r-- root/root 1415 2017-05-24 08:43 ./usr/include/mash/MinHashHeap.h
-rw-r--r-- root/root 1109 2017-05-24 08:43 ./usr/include/mash/MurmurHash3.h
-rw-r--r-- root/root 7591 2017-05-24 08:43 ./usr/include/mash/Sketch.h
-rw-r--r-- root/root 1697 2017-05-24 08:43 ./usr/include/mash/ThreadPool.h
drwxr-xr-x root/root 0 2017-05-24 08:43 ./usr/include/mash/capnp/
-rw-r--r-- root/root 48200 2017-05-24 08:43 ./usr/include/mash/capnp/MinHash.capnp.h
-rw-r--r-- root/root 603 2017-05-24 08:43 ./usr/include/mash/hash.h
-rw-r--r-- root/root 12437 2017-05-24 08:43 ./usr/include/mash/kseq.h
-rw-r--r-- root/root 301 2017-05-24 08:43 ./usr/include/mash/memcpyLink.h
-rw-r--r-- root/root 639 2017-05-24 08:43 ./usr/include/mash/sketchParameterSetup.h
-rw-r--r-- root/root 294 2017-05-24 08:43 ./usr/include/mash/version.h
drwxr-xr-x root/root 0 2017-05-24 08:43 ./usr/lib/
-rw-r--r-- root/root 595866 2017-05-24 08:43 ./usr/lib/libmash.a
drwxr-xr-x root/root 0 2017-05-24 08:43 ./usr/share/
drwxr-xr-x root/root 0 2017-05-24 08:43 ./usr/share/doc/
drwxr-xr-x root/root 0 2017-05-24 08:43 ./usr/share/doc/libmash-dev/
-rw-r--r-- root/root 430 2017-05-24 08:43 ./usr/share/doc/libmash-dev/changelog.Debian.gz
-rw-r--r-- root/root 15529 2016-07-19 20:41 ./usr/share/doc/libmash-dev/copyright
mash-dbgsym_1.1.1-2_armhf.deb
-----------------------------
new debian package, version 2.0.
size 1923812 bytes: control archive=476 bytes.
394 bytes, 13 lines control
106 bytes, 1 lines md5sums
Package: mash-dbgsym
Source: mash
Version: 1.1.1-2
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1939
Depends: mash (= 1.1.1-2)
Section: debug
Priority: extra
Homepage: https://mash.readthedocs.io
Description: Debug symbols for mash
Build-Ids: 7857d1fe8a06d8938e80c7d334dde8f2d893826e
drwxr-xr-x root/root 0 2017-05-24 08:43 ./
drwxr-xr-x root/root 0 2017-05-24 08:43 ./usr/
drwxr-xr-x root/root 0 2017-05-24 08:43 ./usr/lib/
drwxr-xr-x root/root 0 2017-05-24 08:43 ./usr/lib/debug/
drwxr-xr-x root/root 0 2017-05-24 08:43 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2017-05-24 08:43 ./usr/lib/debug/.build-id/78/
-rw-r--r-- root/root 1975268 2017-05-24 08:43 ./usr/lib/debug/.build-id/78/57d1fe8a06d8938e80c7d334dde8f2d893826e.debug
drwxr-xr-x root/root 0 2017-05-24 08:43 ./usr/share/
drwxr-xr-x root/root 0 2017-05-24 08:43 ./usr/share/doc/
lrwxrwxrwx root/root 0 2017-05-24 08:43 ./usr/share/doc/mash-dbgsym -> mash
mash_1.1.1-2_armhf.deb
----------------------
new debian package, version 2.0.
size 106896 bytes: control archive=1032 bytes.
1004 bytes, 18 lines control
521 bytes, 8 lines md5sums
Package: mash
Version: 1.1.1-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 291
Depends: libc6 (>= 2.4), libcapnp-0.5.3, libgcc1 (>= 1:3.5), libgsl2, libstdc++6 (>= 5.2), zlib1g (>= 1:1.1.4)
Section: science
Priority: optional
Homepage: https://mash.readthedocs.io
Description: fast genome and metagenome distance estimation using MinHash
Mash uses MinHash locality-sensitive hashing to reduce large biosequences to
a representative sketch and rapidly estimate pairwise distances between
genomes or metagenomes. Mash sketch databases effectively delineate known
species boundaries, allow construction of approximate phylogenies, and can be
searched in seconds using assembled genomes or raw sequencing runs from
Illumina, Pacific Biosciences, and Oxford Nanopore.
For metagenomics, Mash scales to thousands of samples and can replicate Human
Microbiome Project and Global Ocean Survey results in a fraction of the time.
drwxr-xr-x root/root 0 2017-05-24 08:43 ./
drwxr-xr-x root/root 0 2017-05-24 08:43 ./usr/
drwxr-xr-x root/root 0 2017-05-24 08:43 ./usr/bin/
-rwxr-xr-x root/root 263732 2017-05-24 08:43 ./usr/bin/mash
drwxr-xr-x root/root 0 2017-05-24 08:43 ./usr/share/
drwxr-xr-x root/root 0 2017-05-24 08:43 ./usr/share/doc/
drwxr-xr-x root/root 0 2017-05-24 08:43 ./usr/share/doc/mash/
-rw-r--r-- root/root 430 2017-05-24 08:43 ./usr/share/doc/mash/changelog.Debian.gz
-rw-r--r-- root/root 15529 2016-07-19 20:41 ./usr/share/doc/mash/copyright
drwxr-xr-x root/root 0 2017-05-24 08:43 ./usr/share/man/
drwxr-xr-x root/root 0 2017-05-24 08:43 ./usr/share/man/man1/
-rw-r--r-- root/root 1673 2017-05-24 08:43 ./usr/share/man/man1/mash-dist.1.gz
-rw-r--r-- root/root 565 2017-05-24 08:43 ./usr/share/man/man1/mash-info.1.gz
-rw-r--r-- root/root 455 2017-05-24 08:43 ./usr/share/man/man1/mash-paste.1.gz
-rw-r--r-- root/root 1710 2017-05-24 08:43 ./usr/share/man/man1/mash-sketch.1.gz
-rw-r--r-- root/root 647 2017-05-24 08:43 ./usr/share/man/man1/mash.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 74048
Build-Time: 221
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 811
Job: mash_1.1.1-2
Machine Architecture: armhf
Package: mash
Package-Time: 1078
Source-Version: 1.1.1-2
Space: 74048
Status: successful
Version: 1.1.1-2
--------------------------------------------------------------------------------
Finished at 2017-05-29T15:14:20Z
Build needed 00:17:58, 74048k disc space