mapsembler2 →
2.2.4+dfsg-4 →
armhf → 2020-06-16 05:44:28
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on testwandboard
+==============================================================================+
| mapsembler2 2.2.4+dfsg-4 (armhf) Tue, 16 Jun 2020 05:03:04 +0000 |
+==============================================================================+
Package: mapsembler2
Version: 2.2.4+dfsg-4
Source Version: 2.2.4+dfsg-4
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-a45568b4-73d6-4ff3-952b-55db6d7430e0' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.7 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.8 MB]
Fetched 24.5 MB in 29s (835 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'mapsembler2' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/mapsembler2.git
Please use:
git clone https://salsa.debian.org/med-team/mapsembler2.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 1411 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main mapsembler2 2.2.4+dfsg-4 (dsc) [2296 B]
Get:2 http://172.17.0.1/private bullseye-staging/main mapsembler2 2.2.4+dfsg-4 (tar) [1389 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main mapsembler2 2.2.4+dfsg-4 (diff) [20.2 kB]
Fetched 1411 kB in 1s (1728 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/mapsembler2-n1CIGM/mapsembler2-2.2.4+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/mapsembler2-n1CIGM' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-x8MwSX/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-x8MwSX/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-x8MwSX/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-x8MwSX/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-x8MwSX/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-x8MwSX/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-x8MwSX/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-x8MwSX/apt_archive ./ Packages [431 B]
Fetched 2107 B in 1s (2850 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 2 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-x8MwSX/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (21.2 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12252 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in amd64 arm64 armel armhf hurd-i386 i386 kfreebsd-amd64 kfreebsd-i386 ppc64el s390x)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), cmake, bc, zlib1g-dev, libhdf5-dev, libcppunit-dev, libboost-dev
Filtered Build-Depends: debhelper-compat (= 13), cmake, bc, zlib1g-dev, libhdf5-dev, libcppunit-dev, libboost-dev
dpkg-deb: building package 'sbuild-build-depends-mapsembler2-dummy' in '/<<BUILDDIR>>/resolver-x8MwSX/apt_archive/sbuild-build-depends-mapsembler2-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-mapsembler2-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-x8MwSX/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-x8MwSX/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-x8MwSX/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-x8MwSX/apt_archive ./ Sources [530 B]
Get:5 copy:/<<BUILDDIR>>/resolver-x8MwSX/apt_archive ./ Packages [608 B]
Fetched 2471 B in 1s (3307 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install mapsembler2 build dependencies (apt-based resolver)
-----------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bc bsdmainutils cmake cmake-data
debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext
gettext-base groff-base hdf5-helpers intltool-debian libaec-dev libaec0
libarchive-zip-perl libarchive13 libboost-dev libboost1.71-dev libbrotli1
libbsd0 libcppunit-1.15-0 libcppunit-dev libcroco3 libcurl4
libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl
libgfortran5 libglib2.0-0 libgssapi-krb5-2 libhdf5-103-1 libhdf5-cpp-103-1
libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100
libhdf5-hl-fortran-100 libicu67 libjpeg-dev libjpeg62-turbo
libjpeg62-turbo-dev libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 libmagic-mgc libmagic1 libncurses6 libnghttp2-14
libpipeline1 libprocps8 libpsl5 librhash0 librtmp1 libsigsegv2 libssh2-1
libssl1.1 libsub-override-perl libsz2 libtinfo5 libtool libuchardet0 libuv1
libxml2 m4 man-db po-debconf procps sensible-utils zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation cmake-doc ninja-build dh-make gettext-doc libasprintf-dev
libgettextpo-dev groff lrzip libboost-doc libboost1.71-doc
libboost-atomic1.71-dev libboost-chrono1.71-dev libboost-container1.71-dev
libboost-context1.71-dev libboost-contract1.71-dev
libboost-coroutine1.71-dev libboost-date-time1.71-dev
libboost-exception1.71-dev libboost-fiber1.71-dev
libboost-filesystem1.71-dev libboost-graph1.71-dev
libboost-graph-parallel1.71-dev libboost-iostreams1.71-dev
libboost-locale1.71-dev libboost-log1.71-dev libboost-math1.71-dev
libboost-mpi1.71-dev libboost-mpi-python1.71-dev libboost-numpy1.71-dev
libboost-program-options1.71-dev libboost-python1.71-dev
libboost-random1.71-dev libboost-regex1.71-dev
libboost-serialization1.71-dev libboost-stacktrace1.71-dev
libboost-system1.71-dev libboost-test1.71-dev libboost-thread1.71-dev
libboost-timer1.71-dev libboost-type-erasure1.71-dev libboost-wave1.71-dev
libboost1.71-tools-dev libmpfrc++-dev libntl-dev libcppunit-doc krb5-doc
krb5-user libhdf5-doc libtool-doc gfortran | fortran95-compiler gcj-jdk
m4-doc apparmor less www-browser libmail-box-perl
Recommended packages:
curl | wget | lynx ca-certificates libarchive-cpio-perl libglib2.0-data
shared-mime-info xdg-user-dirs krb5-locales libgpm2 publicsuffix libltdl-dev
libmail-sendmail-perl psmisc
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bc bsdmainutils cmake cmake-data
debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext
gettext-base groff-base hdf5-helpers intltool-debian libaec-dev libaec0
libarchive-zip-perl libarchive13 libboost-dev libboost1.71-dev libbrotli1
libbsd0 libcppunit-1.15-0 libcppunit-dev libcroco3 libcurl4
libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl
libgfortran5 libglib2.0-0 libgssapi-krb5-2 libhdf5-103-1 libhdf5-cpp-103-1
libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100
libhdf5-hl-fortran-100 libicu67 libjpeg-dev libjpeg62-turbo
libjpeg62-turbo-dev libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 libmagic-mgc libmagic1 libncurses6 libnghttp2-14
libpipeline1 libprocps8 libpsl5 librhash0 librtmp1 libsigsegv2 libssh2-1
libssl1.1 libsub-override-perl libsz2 libtinfo5 libtool libuchardet0 libuv1
libxml2 m4 man-db po-debconf procps sbuild-build-depends-mapsembler2-dummy
sensible-utils zlib1g-dev
0 upgraded, 79 newly installed, 0 to remove and 2 not upgraded.
Need to get 41.2 MB of archives.
After this operation, 258 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-x8MwSX/apt_archive ./ sbuild-build-depends-mapsembler2-dummy 0.invalid.0 [900 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libtinfo5 armhf 6.2-1 [318 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-5 [783 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.2-2 [29.6 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.2-1 [1269 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf libncurses6 armhf 6.2-1 [79.5 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf libprocps8 armhf 2:3.3.16-5 [59.8 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf procps armhf 2:3.3.16-5 [238 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12+nmu1 [16.0 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf bc armhf 1.07.1-2+b1 [101 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-5 [262 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.38-5 [113 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-5 [67.0 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.2-1 [775 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf cmake-data all 3.16.3-3+rpi1 [1628 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf libicu67 armhf 67.1-2 [8286 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-5+b1 [593 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf libarchive13 armhf 3.4.3-1 [295 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf libbrotli1 armhf 1.0.7-6.1 [255 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf libkrb5support0 armhf 1.17-7+rpi1+b1 [61.8 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf libk5crypto3 armhf 1.17-7+rpi1+b1 [112 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf libkeyutils1 armhf 1.6.1-2 [14.5 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf libssl1.1 armhf 1.1.1g-1 [1272 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf libkrb5-3 armhf 1.17-7+rpi1+b1 [318 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf libgssapi-krb5-2 armhf 1.17-7+rpi1+b1 [136 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf libnghttp2-14 armhf 1.41.0-2 [61.2 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf libpsl5 armhf 0.21.0-1.1 [54.2 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b1 [54.3 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf libssh2-1 armhf 1.8.0-2.1 [126 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf libcurl4 armhf 7.68.0-1 [286 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.9-1 [71.5 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf libjsoncpp1 armhf 1.7.4-3.1 [65.8 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf librhash0 armhf 1.3.9-1 [133 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf libuv1 armhf 1.35.0-2 [115 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf cmake armhf 3.16.3-3+rpi1 [2653 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-14 [513 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 13.1 [187 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.8.1-1 [25.2 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.8.1-1 [14.9 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.64.3-1 [1159 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 13.1 [1012 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf hdf5-helpers armhf 1.10.6+repack-2 [40.0 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf libaec0 armhf 1.0.4-1 [20.0 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf libsz2 armhf 1.0.4-1 [6664 B]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf libaec-dev armhf 1.0.4-1 [17.8 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf libboost1.71-dev armhf 1.71.0-6+b1 [9099 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf libboost-dev armhf 1.71.0.3+b2 [4624 B]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf libcppunit-1.15-0 armhf 1.15.1-2 [133 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf libcppunit-dev armhf 1.15.1-2 [194 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf libgfortran5 armhf 10.1.0-3+rpi1 [231 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-103-1 armhf 1.10.6+repack-2 [1184 kB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-cpp-103-1 armhf 1.10.6+repack-2 [128 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-fortran-102 armhf 1.10.6+repack-2 [93.0 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-hl-100 armhf 1.10.6+repack-2 [78.1 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-hl-fortran-100 armhf 1.10.6+repack-2 [49.8 kB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-hl-cpp-100 armhf 1.10.6+repack-2 [36.9 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo armhf 1:1.5.2-2+b1 [110 kB]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo-dev armhf 1:1.5.2-2+b1 [179 kB]
Get:78 http://172.17.0.1/private bullseye-staging/main armhf libjpeg-dev all 1:1.5.2-2 [57.5 kB]
Get:79 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-dev armhf 1.10.6+repack-2 [2167 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up autopoint (0.19.8.1-10) ...
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Setting up libgfortran5:armhf (10.1.0-3+rpi1) ...
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Setting up libxml2:armhf (2.9.10+dfsg-5+b1) ...
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Setting up libsz2:armhf (1.0.4-1) ...
Setting up libjsoncpp1:armhf (1.7.4-3.1) ...
Setting up libfile-stripnondeterminism-perl (1.8.1-1) ...
Setting up libtool (2.4.6-14) ...
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Setting up libjpeg-dev (1:1.5.2-2) ...
Setting up bc (1.07.1-2+b1) ...
Setting up m4 (1.4.18-4) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libgssapi-krb5-2:armhf (1.17-7+rpi1+b1) ...
Setting up libcroco3:armhf (0.6.13-1) ...
Setting up autoconf (2.69-11.1) ...
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Setting up dwz (0.13-5) ...
Setting up groff-base (1.22.4-5) ...
Setting up procps (2:3.3.16-5) ...
update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode
Setting up libhdf5-cpp-103-1:armhf (1.10.6+repack-2) ...
Setting up libcurl4:armhf (7.68.0-1) ...
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Setting up automake (1:1.16.2-1) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up gettext (0.19.8.1-10) ...
Setting up man-db (2.9.2-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up libhdf5-hl-cpp-100:armhf (1.10.6+repack-2) ...
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Setting up cmake (3.16.3-3+rpi1) ...
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Setting up po-debconf (1.0.21) ...
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-serial.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
Setting up dh-autoreconf (19) ...
Setting up debhelper (13.1) ...
Setting up sbuild-build-depends-mapsembler2-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.30-8+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.34-8+rpi1 dpkg-dev_1.19.7 g++-9_9.3.0-13+rpi1 gcc-9_9.3.0-13+rpi1 libc6-dev_2.30-8+rpi1 libstdc++-9-dev_9.3.0-13+rpi1 libstdc++6_10.1.0-3+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2
Package versions: adduser_3.118 apt_2.1.6 autoconf_2.69-11.1 automake_1:1.16.2-1 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.47 bash_5.0-6 bc_1.07.1-2+b1 binutils_2.34-8+rpi1 binutils-arm-linux-gnueabihf_2.34-8+rpi1 binutils-common_2.34-8+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.35.2-2 build-essential_12.8 bzip2_1.0.8-3 cmake_3.16.3-3+rpi1 cmake-data_3.16.3-3+rpi1 coreutils_8.30-3 cpp_4:9.2.1-3.1+rpi1 cpp-9_9.3.0-13+rpi1 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13.1 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.8.1-1 diffutils_1:3.7-3 dirmngr_2.2.20-1 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.24-1 fdisk_2.35.2-2 file_1:5.38-5 findutils_4.7.0-1 g++_4:9.2.1-3.1+rpi1 g++-9_9.3.0-13+rpi1 gcc_4:9.2.1-3.1+rpi1 gcc-10-base_10.1.0-3+rpi1 gcc-9_9.3.0-13+rpi1 gcc-9-base_9.3.0-13+rpi1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gnupg_2.2.20-1 gnupg-l10n_2.2.20-1 gnupg-utils_2.2.20-1 gpg_2.2.20-1 gpg-agent_2.2.20-1 gpg-wks-client_2.2.20-1 gpg-wks-server_2.2.20-1 gpgconf_2.2.20-1 gpgsm_2.2.20-1 gpgv_2.2.20-1 grep_3.4-1 groff-base_1.22.4-5 gzip_1.10-2 hdf5-helpers_1.10.6+repack-2 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20190709-3 libacl1_2.2.53-8 libaec-dev_1.0.4-1 libaec0_1.0.4-1 libapt-pkg6.0_2.1.6 libarchive-zip-perl_1.68-1 libarchive13_3.4.3-1 libasan5_9.3.0-13+rpi1 libassuan0_2.5.3-7 libatomic1_10.1.0-3+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3 libaudit1_1:2.8.5-3 libbinutils_2.34-8+rpi1 libblkid1_2.35.2-2 libboost-dev_1.71.0.3+b2 libboost1.71-dev_1.71.0-6+b1 libbrotli1_1.0.7-6.1 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-3 libc-bin_2.30-8+rpi1 libc-dev-bin_2.30-8+rpi1 libc6_2.30-8+rpi1 libc6-dev_2.30-8+rpi1 libcap-ng0_0.7.9-2.2 libcap2_1:2.34-2 libcap2-bin_1:2.34-2 libcc1-0_10.1.0-3+rpi1 libcom-err2_1.45.6-1 libcppunit-1.15-0_1.15.1-2 libcppunit-dev_1.15.1-2 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.16-1 libcrypt1_1:4.4.16-1 libctf-nobfd0_2.34-8+rpi1 libctf0_2.34-8+rpi1 libcurl4_7.68.0-1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.252 libdebhelper-perl_13.1 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libexpat1_2.2.9-1 libext2fs2_1.45.6-1 libfakeroot_1.24-1 libfdisk1_2.35.2-2 libffi7_3.3-4 libfile-stripnondeterminism-perl_1.8.1-1 libgcc-9-dev_9.3.0-13+rpi1 libgcc-s1_10.1.0-3+rpi1 libgcrypt20_1.8.5-5 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libgfortran5_10.1.0-3+rpi1 libglib2.0-0_2.64.3-1 libgmp10_2:6.2.0+dfsg-4 libgnutls30_3.6.14-1 libgomp1_10.1.0-3+rpi1 libgpg-error0_1.37-1 libgssapi-krb5-2_1.17-7+rpi1+b1 libhdf5-103-1_1.10.6+repack-2 libhdf5-cpp-103-1_1.10.6+repack-2 libhdf5-dev_1.10.6+repack-2 libhdf5-fortran-102_1.10.6+repack-2 libhdf5-hl-100_1.10.6+repack-2 libhdf5-hl-cpp-100_1.10.6+repack-2 libhdf5-hl-fortran-100_1.10.6+repack-2 libhogweed5_3.5.1+really3.5.1-2 libicu67_67.1-2 libidn2-0_2.3.0-1 libisl22_0.22.1-1 libjpeg-dev_1:1.5.2-2 libjpeg62-turbo_1:1.5.2-2+b1 libjpeg62-turbo-dev_1:1.5.2-2+b1 libjsoncpp1_1.7.4-3.1 libk5crypto3_1.17-7+rpi1+b1 libkeyutils1_1.6.1-2 libkrb5-3_1.17-7+rpi1+b1 libkrb5support0_1.17-7+rpi1+b1 libksba8_1.4.0-2 libldap-2.4-2_2.4.50+dfsg-1 libldap-common_2.4.50+dfsg-1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmount1_2.35.2-2 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libncurses6_6.2-1 libncursesw6_6.2-1 libnettle7_3.5.1+really3.5.1-2 libnghttp2-14_1.41.0-2 libnpth0_1.6-1 libp11-kit0_0.23.20-1 libpam-cap_1:2.34-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12 libperl5.30_5.30.3-4 libpipeline1_1.5.2-2 libprocps8_2:3.3.16-5 libpsl5_0.21.0-1.1 libreadline7_7.0-5 libreadline8_8.0-4 librhash0_1.3.9-1 librtmp1_2.4+20151223.gitfa8646d.1-2+b1 librust-rand-core-dev_0.5.1-1 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.3-1+rpi1 libselinux1_3.0-1+b1 libsemanage-common_3.0-1 libsemanage1_3.0-1+b1 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.35.2-2 libsqlite3-0_3.31.1-5 libss2_1.45.6-1 libssh2-1_1.8.0-2.1 libssl1.1_1.1.1g-1 libstdc++-9-dev_9.3.0-13+rpi1 libstdc++6_10.1.0-3+rpi1 libsub-override-perl_0.09-2 libsystemd0_245.6-1+rpi1 libsz2_1.0.4-1 libtasn1-6_4.16.0-2 libtinfo5_6.2-1 libtinfo6_6.2-1 libtool_2.4.6-14 libubsan1_10.1.0-3+rpi1 libuchardet0_0.0.7-1 libudev1_245.6-1+rpi1 libunistring2_0.9.10-4 libuuid1_2.35.2-2 libuv1_1.35.0-2 libxml2_2.9.10+dfsg-5+b1 libzstd1_1.4.5+dfsg-2+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.2.1-2 man-db_2.9.2-1 mawk_1.3.4.20200120-2 mount_2.35.2-2 ncurses-base_6.2-1 ncurses-bin_6.2-1 netbase_6.1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.3-4 perl-base_5.30.3-4 perl-modules-5.30_5.30.3-4 pinentry-curses_1.1.0-4 po-debconf_1.0.21 procps_2:3.3.16-5 raspbian-archive-keyring_20120528.2 readline-common_8.0-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-mapsembler2-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-3 tar_1.30+dfsg-7 tzdata_2020a-1 util-linux_2.35.2-2 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Sat Jun 13 13:38:25 2020 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./mapsembler2_2.2.4+dfsg-4.dsc
dpkg-source: info: extracting mapsembler2 in /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg
dpkg-source: info: unpacking mapsembler2_2.2.4+dfsg.orig.tar.xz
dpkg-source: info: unpacking mapsembler2_2.2.4+dfsg-4.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying use_debian_libs
dpkg-source: info: applying run_pipeline
dpkg-source: info: applying add_hardening
dpkg-source: info: applying skip_mphe
dpkg-source: info: applying gcc-5.patch
dpkg-source: info: applying libgomp.patch
dpkg-source: info: applying spelling.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-a45568b4-73d6-4ff3-952b-55db6d7430e0
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package mapsembler2
dpkg-buildpackage: info: source version 2.2.4+dfsg-4
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean
debian/rules override_dh_clean
make[1]: Entering directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg'
rm -rf mapsembler2_extremities/build
cd mapsembler2_extend && make clean
make[2]: Entering directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extend'
rm -rf *.o ../minia/*.o read_coherence_mapsembler/*.o
make[2]: Leaving directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extend'
rm -f mapsembler2_extend/mapsembler_extend
cd kissreads_graph && make clean
make[2]: Entering directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/kissreads_graph'
rm -rf kissreads_graph *.o read_coherence_mapsembler/*.o ../minia/*.o
make[2]: Leaving directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/kissreads_graph'
rm -f kissreads_graph/mapsembler2_kissreads_graph
cd kissreads && make clean
make[2]: Entering directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/kissreads'
rm -rf ./src/*.o kissreads
make[2]: Leaving directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/kissreads'
rm -f kissreads/mapsembler2_kissreads
dh_clean
make[1]: Leaving directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg'
debian/rules binary-arch
dh binary-arch
dh_update_autotools_config -a
dh_autoreconf -a
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg'
mkdir mapsembler2_extremities/build
cd mapsembler2_extremities/build && cmake .. && make
-- The C compiler identification is GNU 9.3.0
-- The CXX compiler identification is GNU 9.3.0
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Performing Test SHARED_PTR_USE_TR1_MEMORY
-- Performing Test SHARED_PTR_USE_TR1_MEMORY - Success
-- Performing Test SHARED_PTR_USE_MEMORY
-- Performing Test SHARED_PTR_USE_MEMORY - Success
-- Performing Test UNORDERED_MAP_USE_TR1_UNORDERED_MAP
-- Performing Test UNORDERED_MAP_USE_TR1_UNORDERED_MAP - Success
-- Performing Test UNORDERED_MAP_USE_UNORDERED_MAP
-- Performing Test UNORDERED_MAP_USE_UNORDERED_MAP - Success
-- gatb-core is here '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core'
-- CppUnit: found headers (in /usr/include) but not the library...
-- CppUnit NOT FOUND
-- Found Perl: /usr/bin/perl (found version "5.30.3")
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of __uint128
-- Check size of __uint128 - failed
CMake Warning (dev) at thirdparty/gatb-core/cmake/DefineInteger.cmake:11 (if):
Policy CMP0054 is not set: Only interpret if() arguments as variables or
keywords when unquoted. Run "cmake --help-policy CMP0054" for policy
details. Use the cmake_policy command to set the policy and suppress this
warning.
Quoted variables like "HAVE_int128_t_USE__uint128" will no longer be
dereferenced when the policy is set to NEW. Since the policy is not set
the OLD behavior will be used.
Call Stack (most recent call first):
thirdparty/gatb-core/cmake/DefineInteger.cmake:33 (Check_Int128)
thirdparty/gatb-core/CMakeLists.txt:39 (DefineInteger)
This warning is for project developers. Use -Wno-dev to suppress it.
-- Check size of __uint128_t
-- Check size of __uint128_t - failed
-------------------------------------------------------------------------------------
-- C++ EXTENSIONS WILL BE USED...
-------------------------------------------------------------------------------------
-- Options: -O3 -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof
-- SUPPORTED KMER SIZES ARE 32 64 96 128
-- ---------- GATB TOOLS ----------
-- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE)
-- ---------- GATB EXAMPLES ----------
-- Add compilation option -DUNORDERED_MAP_TR1_FOUND=1
-- Configuring done
CMake Warning (dev) at thirdparty/gatb-core/CMakeLists.txt:221 (ADD_DEPENDENCIES):
Policy CMP0046 is not set: Error on non-existent dependency in
add_dependencies. Run "cmake --help-policy CMP0046" for policy details.
Use the cmake_policy command to set the policy and suppress this warning.
The dependency target "hdf5" of target "gatbcore-static" does not exist.
This warning is for project developers. Use -Wno-dev to suppress it.
-- Generating done
-- Build files have been written to: /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build
make[2]: Entering directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build'
make[3]: Entering directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build'
make[4]: Entering directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build'
Scanning dependencies of target gatbcore-static
make[4]: Leaving directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build'
make[4]: Entering directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build'
[ 0%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o
[ 3%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/System.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/api/Data.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/Sequence.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/IBank.hpp:33,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/AbstractBank.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankBinary.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankBinary.cpp:20:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp: In constructor 'gatb::core::system::ExceptionErrno::ExceptionErrno(const char*, ...)':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:24: warning: ignoring return value of 'char* strerror_r(int, char*, size_t)', declared with attribute warn_unused_result [-Wunused-result]
126 | strerror_r (errno, buffer, BUFSIZ);
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
[ 3%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.hpp:33,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.cpp:20:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile<Item>::fill(std::vector<Item>&, size_t)':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type]
375 | }
| ^
[ 7%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/System.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/api/Data.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/Sequence.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/IBank.hpp:33,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/AbstractBank.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankFasta.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankFasta.cpp:20:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp: In constructor 'gatb::core::system::ExceptionErrno::ExceptionErrno(const char*, ...)':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:24: warning: ignoring return value of 'char* strerror_r(int, char*, size_t)', declared with attribute warn_unused_result [-Wunused-result]
126 | strerror_r (errno, buffer, BUFSIZ);
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
[ 7%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o
[ 10%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o
[ 10%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRegistery.cpp.o
[ 14%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o
[ 14%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile<Item>::fill(std::vector<Item>&, size_t)':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type]
375 | }
| ^
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<128>::Count]':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
113 | vasprintf (&buffer, fmt, args);
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<96>::Count]':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<64>::Count]':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<32>::Count]':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:34,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<32>::Count*, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> > >; _Tp = gatb::core::kmer::impl::Kmer<32>::Count; _Alloc = std::allocator<gatb::core::kmer::impl::Kmer<32>::Count>]':
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type 'std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<32>::Count*, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> > >'} changed in GCC 7.1
721 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<32>::Count*, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> > >' changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<32>::Count*, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> > >' changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gatb::core::kmer::impl::Kmer<64>::Count}; _Tp = gatb::core::kmer::impl::Kmer<64>::Count; _Alloc = std::allocator<gatb::core::kmer::impl::Kmer<64>::Count>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<64>::Count*, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<64>::Count*, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> > >; _Tp = gatb::core::kmer::impl::Kmer<64>::Count; _Alloc = std::allocator<gatb::core::kmer::impl::Kmer<64>::Count>]':
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type 'std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<64>::Count*, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> > >'} changed in GCC 7.1
721 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<64>::Count*, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> > >' changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<64>::Count*, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> > >' changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gatb::core::kmer::impl::Kmer<96>::Count}; _Tp = gatb::core::kmer::impl::Kmer<96>::Count; _Alloc = std::allocator<gatb::core::kmer::impl::Kmer<96>::Count>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<96>::Count*, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<96>::Count*, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> > >; _Tp = gatb::core::kmer::impl::Kmer<96>::Count; _Alloc = std::allocator<gatb::core::kmer::impl::Kmer<96>::Count>]':
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type 'std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<96>::Count*, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> > >'} changed in GCC 7.1
721 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<96>::Count*, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> > >' changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<96>::Count*, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> > >' changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gatb::core::kmer::impl::Kmer<128>::Count}; _Tp = gatb::core::kmer::impl::Kmer<128>::Count; _Alloc = std::allocator<gatb::core::kmer::impl::Kmer<128>::Count>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<128>::Count*, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<128>::Count*, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> > >; _Tp = gatb::core::kmer::impl::Kmer<128>::Count; _Alloc = std::allocator<gatb::core::kmer::impl::Kmer<128>::Count>]':
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type 'std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<128>::Count*, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> > >'} changed in GCC 7.1
721 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<128>::Count*, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> > >' changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<128>::Count*, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> > >' changed in GCC 7.1
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<32>::Count*, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<32>::Count*, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<32>::Count*, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> > >' changed in GCC 7.1
In file included from /usr/include/c++/9/set:60,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:30,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<long long int&&>, std::tuple<>}; _Key = long long int; _Val = std::pair<const long long int, long long unsigned int*>; _KeyOfValue = std::_Select1st<std::pair<const long long int, long long unsigned int*> >; _Compare = std::less<long long int>; _Alloc = std::allocator<std::pair<const long long int, long long unsigned int*> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<long long int, std::pair<const long long int, long long unsigned int*>, std::_Select1st<std::pair<const long long int, long long unsigned int*> >, std::less<long long int>, std::allocator<std::pair<const long long int, long long unsigned int*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long int, long long unsigned int*> >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/TimeInfo.hpp:34,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:35,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/usr/include/c++/9/bits/stl_map.h: In member function 'T& gatb::core::system::impl::ThreadObject<T>::operator()() [with T = long long unsigned int]':
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<long long int, std::pair<const long long int, long long unsigned int*>, std::_Select1st<std::pair<const long long int, long long unsigned int*> >, std::less<long long int>, std::allocator<std::pair<const long long int, long long unsigned int*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long int, long long unsigned int*> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<long long int, std::pair<const long long int, long long unsigned int*>, std::_Select1st<std::pair<const long long int, long long unsigned int*> >, std::less<long long int>, std::allocator<std::pair<const long long int, long long unsigned int*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long int, long long unsigned int*> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/set:60,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:30,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<long long int&&>, std::tuple<>}; _Key = long long int; _Val = std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> >*>; _KeyOfValue = std::_Select1st<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> >*> >; _Compare = std::less<long long int>; _Alloc = std::allocator<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> >*> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<long long int, std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> >*>, std::_Select1st<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> >*> >, std::less<long long int>, std::allocator<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> >*> >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<long long int&&>, std::tuple<>}; _Key = long long int; _Val = std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> >*>; _KeyOfValue = std::_Select1st<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> >*> >; _Compare = std::less<long long int>; _Alloc = std::allocator<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> >*> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<long long int, std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> >*>, std::_Select1st<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> >*> >, std::less<long long int>, std::allocator<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> >*> >'} changed in GCC 7.1
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<64>::Count*, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<64>::Count*, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<64>::Count*, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<64>::Count*, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<64>::Count*, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> > >' changed in GCC 7.1
In file included from /usr/include/c++/9/set:60,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:30,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<long long int&&>, std::tuple<>}; _Key = long long int; _Val = std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> >*>; _KeyOfValue = std::_Select1st<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> >*> >; _Compare = std::less<long long int>; _Alloc = std::allocator<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> >*> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<long long int, std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> >*>, std::_Select1st<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> >*> >, std::less<long long int>, std::allocator<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> >*> >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<96>::Count*, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<96>::Count*, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<96>::Count*, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<96>::Count*, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<96>::Count*, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> > >' changed in GCC 7.1
In file included from /usr/include/c++/9/set:60,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:30,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<long long int&&>, std::tuple<>}; _Key = long long int; _Val = std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> >*>; _KeyOfValue = std::_Select1st<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> >*> >; _Compare = std::less<long long int>; _Alloc = std::allocator<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> >*> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<long long int, std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> >*>, std::_Select1st<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> >*> >, std::less<long long int>, std::allocator<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> >*> >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<128>::Count*, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<128>::Count*, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<128>::Count*, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<128>::Count*, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<128>::Count*, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> > >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<32>::Count*, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> > >; _Distance = int; _Tp = gatb::core::kmer::impl::Kmer<32>::Count; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<32>::Count*, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<32>::Count*, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<32>::Count*, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<32>::Count*, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<32>::Count*, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<32>::Count*, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:34,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void gatb::core::debruijn::impl::BranchingAlgorithm<span>::execute() [with unsigned int span = 32]':
/usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type 'std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<32>::Count*, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> > >'} changed in GCC 7.1
1662 | _M_range_insert(__pos, __first, __last,
| ^~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<32>::Count*, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> > >' changed in GCC 7.1
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<32>::Count*, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<32>::Count*, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<32>::Count*, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<64>::Count*, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> > >; _Distance = int; _Tp = gatb::core::kmer::impl::Kmer<64>::Count; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<64>::Count*, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<64>::Count*, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<64>::Count*, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<64>::Count*, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<64>::Count*, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:34,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void gatb::core::debruijn::impl::BranchingAlgorithm<span>::execute() [with unsigned int span = 64]':
/usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type 'std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<64>::Count*, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> > >'} changed in GCC 7.1
1662 | _M_range_insert(__pos, __first, __last,
| ^~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<64>::Count*, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> > >' changed in GCC 7.1
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<64>::Count*, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<64>::Count*, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<64>::Count*, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<96>::Count*, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> > >; _Distance = int; _Tp = gatb::core::kmer::impl::Kmer<96>::Count; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<96>::Count*, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<96>::Count*, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<96>::Count*, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<96>::Count*, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<96>::Count*, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<96>::Count*, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:34,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void gatb::core::debruijn::impl::BranchingAlgorithm<span>::execute() [with unsigned int span = 96]':
/usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type 'std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<96>::Count*, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> > >'} changed in GCC 7.1
1662 | _M_range_insert(__pos, __first, __last,
| ^~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<96>::Count*, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> > >' changed in GCC 7.1
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<96>::Count*, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<96>::Count*, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<96>::Count*, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<128>::Count*, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> > >; _Distance = int; _Tp = gatb::core::kmer::impl::Kmer<128>::Count; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<128>::Count*, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<128>::Count*, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<128>::Count*, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<128>::Count*, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<128>::Count*, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<128>::Count*, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:34,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void gatb::core::debruijn::impl::BranchingAlgorithm<span>::execute() [with unsigned int span = 128]':
/usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type 'std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<128>::Count*, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> > >'} changed in GCC 7.1
1662 | _M_range_insert(__pos, __first, __last,
| ^~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<128>::Count*, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> > >' changed in GCC 7.1
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<128>::Count*, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<128>::Count*, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<128>::Count*, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/TimeInfo.hpp:34,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:35,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/usr/include/c++/9/bits/stl_map.h: In member function 'void gatb::core::tools::dp::IDispatcher::IteratorCommand<Item, Functor>::execute() [with Item = gatb::core::debruijn::impl::Node; Functor = gatb::core::debruijn::impl::BranchingAlgorithm<span>::execute() [with unsigned int span = 96]::<lambda(const gatb::core::debruijn::impl::Node&)>]':
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<long long int, std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> >*>, std::_Select1st<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> >*> >, std::less<long long int>, std::allocator<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> >*> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<long long int, std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> >*>, std::_Select1st<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> >*> >, std::less<long long int>, std::allocator<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> >*> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:34,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<96>::Count*, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/TimeInfo.hpp:34,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:35,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/usr/include/c++/9/bits/stl_map.h: In member function 'void gatb::core::tools::dp::IDispatcher::IteratorCommand<Item, Functor>::execute() [with Item = gatb::core::debruijn::impl::Node; Functor = gatb::core::debruijn::impl::BranchingAlgorithm<span>::execute() [with unsigned int span = 64]::<lambda(const gatb::core::debruijn::impl::Node&)>]':
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<long long int, std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> >*>, std::_Select1st<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> >*> >, std::less<long long int>, std::allocator<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> >*> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<long long int, std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> >*>, std::_Select1st<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> >*> >, std::less<long long int>, std::allocator<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> >*> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:34,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<64>::Count*, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/TimeInfo.hpp:34,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:35,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/usr/include/c++/9/bits/stl_map.h: In member function 'void gatb::core::tools::dp::IDispatcher::IteratorCommand<Item, Functor>::execute() [with Item = gatb::core::debruijn::impl::Node; Functor = gatb::core::debruijn::impl::BranchingAlgorithm<span>::execute() [with unsigned int span = 32]::<lambda(const gatb::core::debruijn::impl::Node&)>]':
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<long long int, std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> >*>, std::_Select1st<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> >*> >, std::less<long long int>, std::allocator<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> >*> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<long long int, std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> >*>, std::_Select1st<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> >*> >, std::less<long long int>, std::allocator<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> >*> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h: In member function 'void gatb::core::tools::dp::IDispatcher::IteratorCommand<Item, Functor>::execute() [with Item = gatb::core::debruijn::impl::Node; Functor = gatb::core::debruijn::impl::BranchingAlgorithm<span>::execute() [with unsigned int span = 128]::<lambda(const gatb::core::debruijn::impl::Node&)>]':
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<long long int, std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> >*>, std::_Select1st<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> >*> >, std::less<long long int>, std::allocator<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> >*> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<long long int, std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> >*>, std::_Select1st<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> >*> >, std::less<long long int>, std::allocator<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> >*> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:34,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<128>::Count*, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[ 17%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Frontline.hpp:25,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Frontline.cpp:24:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile<Item>::fill(std::vector<Item>&, size_t)':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type]
375 | }
| ^
[ 17%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile<Item>::fill(std::vector<Item>&, size_t)':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type]
375 | }
| ^
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp: In static member function 'static gatb::core::debruijn::impl::Graph gatb::core::debruijn::impl::Graph::create(gatb::core::bank::IBank*, const char*, ...)':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:566:15: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
566 | vasprintf (&buffer, fmt, args);
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp: In static member function 'static gatb::core::debruijn::impl::Graph gatb::core::debruijn::impl::Graph::create(const char*, ...)':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:590:15: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
590 | vasprintf (&buffer, fmt, args);
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:30:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function 'static std::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
55 | vasprintf (&buffer, fmt, args);
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/IBank.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::debruijn::impl::BranchingNode&}; _Tp = gatb::core::debruijn::impl::BranchingNode; _Alloc = std::allocator<gatb::core::debruijn::impl::BranchingNode>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gatb::core::debruijn::impl::BranchingNode, std::allocator<gatb::core::debruijn::impl::BranchingNode> >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::BranchingNode*, std::vector<gatb::core::debruijn::impl::BranchingNode, std::allocator<gatb::core::debruijn::impl::BranchingNode> > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/IBank.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual void gatb::core::debruijn::impl::Graph::neighbors(IteratorInput, IteratorInput) const [with T = gatb::core::debruijn::impl::BranchingNode; IteratorInput = std::_Rb_tree_const_iterator<gatb::core::debruijn::impl::BranchingNode>]::Cmd::execute()':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::BranchingNode*, std::vector<gatb::core::debruijn::impl::BranchingNode, std::allocator<gatb::core::debruijn::impl::BranchingNode> > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp: In member function 'std::set<T> gatb::core::debruijn::impl::Graph::neighbors(IteratorInput, IteratorInput) const [with T = gatb::core::debruijn::impl::BranchingNode; IteratorInput = std::_Rb_tree_const_iterator<gatb::core::debruijn::impl::BranchingNode>]':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:2139:25: note: parameter passing for argument of type 'std::set<gatb::core::debruijn::impl::BranchingNode>::iterator' {aka 'std::_Rb_tree_const_iterator<gatb::core::debruijn::impl::BranchingNode>'} changed in GCC 7.1
2139 | std::set<BranchingNode> Graph::neighbors (std::set<BranchingNode>::iterator first, std::set<BranchingNode>::iterator last) const
| ^~~~~
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:2139:25: note: parameter passing for argument of type 'std::set<gatb::core::debruijn::impl::BranchingNode>::iterator' {aka 'std::_Rb_tree_const_iterator<gatb::core::debruijn::impl::BranchingNode>'} changed in GCC 7.1
[ 21%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile<Item>::fill(std::vector<Item>&, size_t)':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type]
375 | }
| ^
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/IBank.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::tools::math::IntegerTemplate<gatb::core::tools::math::LargeInt<1>, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >&}; _Tp = gatb::core::tools::math::IntegerTemplate<gatb::core::tools::math::LargeInt<1>, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >; _Alloc = std::allocator<gatb::core::tools::math::IntegerTemplate<gatb::core::tools::math::LargeInt<1>, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> > >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gatb::core::tools::math::IntegerTemplate<gatb::core::tools::math::LargeInt<1>, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >, std::allocator<gatb::core::tools::math::IntegerTemplate<gatb::core::tools::math::LargeInt<1>, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> > > >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::tools::math::IntegerTemplate<gatb::core::tools::math::LargeInt<1>, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >*, std::vector<gatb::core::tools::math::IntegerTemplate<gatb::core::tools::math::LargeInt<1>, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >, std::allocator<gatb::core::tools::math::IntegerTemplate<gatb::core::tools::math::LargeInt<1>, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> > > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/IBank.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24:
/usr/include/c++/9/bits/stl_vector.h: In constructor 'gatb::core::debruijn::impl::BranchingTerminator::BranchingTerminator(const gatb::core::debruijn::impl::Graph&)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::IntegerTemplate<gatb::core::tools::math::LargeInt<1>, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >*, std::vector<gatb::core::tools::math::IntegerTemplate<gatb::core::tools::math::LargeInt<1>, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >, std::allocator<gatb::core::tools::math::IntegerTemplate<gatb::core::tools::math::LargeInt<1>, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> > > > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In constructor 'gatb::core::debruijn::impl::BranchingTerminator::BranchingTerminator(const gatb::core::debruijn::impl::Graph&)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::IntegerTemplate<gatb::core::tools::math::LargeInt<1>, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >*, std::vector<gatb::core::tools::math::IntegerTemplate<gatb::core::tools::math::LargeInt<1>, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >, std::allocator<gatb::core::tools::math::IntegerTemplate<gatb::core::tools::math::LargeInt<1>, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> > > > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 21%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:24:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile<Item>::fill(std::vector<Item>&, size_t)':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type]
375 | }
| ^
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In member function 'bool gatb::core::debruijn::impl::MonumentTraversal::validate_consensuses(std::set<gatb::core::debruijn::impl::Path>&, gatb::core::debruijn::impl::Path&)':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:675:26: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::set<gatb::core::debruijn::impl::Path>::size_type' {aka 'unsigned int'} [-Wformat=]
675 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev);
| ~~^ ~~~~~~~~~~~~~~~~~~
| | |
| long unsigned int std::set<gatb::core::debruijn::impl::Path>::size_type {aka unsigned int}
| %u
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In member function 'gatb::core::debruijn::impl::Path gatb::core::debruijn::impl::MonumentTraversal::most_abundant_consensus(std::set<gatb::core::debruijn::impl::Path>&)':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:772:47: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long int' [-Wformat=]
772 | printf("path: %s mean abundance: %d\n",p_str.c_str(),mean_abundance);
| ~^ ~~~~~~~~~~~~~~
| | |
| int long int
| %ld
[ 25%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.hpp:35,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp:20:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile<Item>::fill(std::vector<Item>&, size_t)':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type]
375 | }
| ^
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.hpp:35,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp:20:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt8]':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
113 | vasprintf (&buffer, fmt, args);
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 25%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o
[ 28%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile<Item>::fill(std::vector<Item>&, size_t)':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type]
375 | }
| ^
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt8]':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
113 | vasprintf (&buffer, fmt, args);
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<4>]':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<3>]':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<2>]':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<1>]':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:34,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::tools::math::LargeInt<1>&}; _Tp = gatb::core::tools::math::LargeInt<1>; _Alloc = std::allocator<gatb::core::tools::math::LargeInt<1> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gatb::core::tools::math::LargeInt<1>, std::allocator<gatb::core::tools::math::LargeInt<1> > >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1>, std::allocator<gatb::core::tools::math::LargeInt<1> > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::tools::math::LargeInt<2>&}; _Tp = gatb::core::tools::math::LargeInt<2>; _Alloc = std::allocator<gatb::core::tools::math::LargeInt<2> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::tools::math::LargeInt<3>&}; _Tp = gatb::core::tools::math::LargeInt<3>; _Alloc = std::allocator<gatb::core::tools::math::LargeInt<3> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::tools::math::LargeInt<4>&}; _Tp = gatb::core::tools::math::LargeInt<4>; _Alloc = std::allocator<gatb::core::tools::math::LargeInt<4> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<gatb::core::tools::math::LargeInt<4>, std::allocator<gatb::core::tools::math::LargeInt<4> > >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<4>*, std::vector<gatb::core::tools::math::LargeInt<4>, std::allocator<gatb::core::tools::math::LargeInt<4> > > >'} changed in GCC 7.1
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1>, std::allocator<gatb::core::tools::math::LargeInt<1> > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1>, std::allocator<gatb::core::tools::math::LargeInt<1> > > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1>, std::allocator<gatb::core::tools::math::LargeInt<1> > > >' changed in GCC 7.1
In file included from /usr/include/c++/9/set:60,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:30,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<long long int&&>, std::tuple<>}; _Key = long long int; _Val = std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<1> >*>; _KeyOfValue = std::_Select1st<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<1> >*> >; _Compare = std::less<long long int>; _Alloc = std::allocator<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<1> >*> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<long long int, std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<1> >*>, std::_Select1st<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<1> >*> >, std::less<long long int>, std::allocator<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<1> >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<1> >*> >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/TimeInfo.hpp:34,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:35,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/9/bits/stl_map.h: In member function 'T& gatb::core::system::impl::ThreadObject<T>::operator()() [with T = gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<1> >]':
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<long long int, std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<1> >*>, std::_Select1st<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<1> >*> >, std::less<long long int>, std::allocator<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<1> >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<1> >*> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<long long int, std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<1> >*>, std::_Select1st<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<1> >*> >, std::less<long long int>, std::allocator<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<1> >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<1> >*> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/set:60,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:30,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<long long int&&>, std::tuple<>}; _Key = long long int; _Val = std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<2> >*>; _KeyOfValue = std::_Select1st<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<2> >*> >; _Compare = std::less<long long int>; _Alloc = std::allocator<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<2> >*> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<long long int, std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<2> >*>, std::_Select1st<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<2> >*> >, std::less<long long int>, std::allocator<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<2> >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<2> >*> >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/TimeInfo.hpp:34,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:35,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/9/bits/stl_map.h: In member function 'T& gatb::core::system::impl::ThreadObject<T>::operator()() [with T = gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<2> >]':
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<long long int, std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<2> >*>, std::_Select1st<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<2> >*> >, std::less<long long int>, std::allocator<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<2> >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<2> >*> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<long long int, std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<2> >*>, std::_Select1st<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<2> >*> >, std::less<long long int>, std::allocator<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<2> >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<2> >*> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >' changed in GCC 7.1
In file included from /usr/include/c++/9/set:60,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:30,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<long long int&&>, std::tuple<>}; _Key = long long int; _Val = std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<3> >*>; _KeyOfValue = std::_Select1st<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<3> >*> >; _Compare = std::less<long long int>; _Alloc = std::allocator<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<3> >*> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<long long int, std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<3> >*>, std::_Select1st<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<3> >*> >, std::less<long long int>, std::allocator<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<3> >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<3> >*> >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/TimeInfo.hpp:34,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:35,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/9/bits/stl_map.h: In member function 'T& gatb::core::system::impl::ThreadObject<T>::operator()() [with T = gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<3> >]':
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<long long int, std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<3> >*>, std::_Select1st<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<3> >*> >, std::less<long long int>, std::allocator<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<3> >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<3> >*> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<long long int, std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<3> >*>, std::_Select1st<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<3> >*> >, std::less<long long int>, std::allocator<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<3> >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<3> >*> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >' changed in GCC 7.1
In file included from /usr/include/c++/9/set:60,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:30,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<long long int&&>, std::tuple<>}; _Key = long long int; _Val = std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<4> >*>; _KeyOfValue = std::_Select1st<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<4> >*> >; _Compare = std::less<long long int>; _Alloc = std::allocator<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<4> >*> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<long long int, std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<4> >*>, std::_Select1st<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<4> >*> >, std::less<long long int>, std::allocator<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<4> >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<4> >*> >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/TimeInfo.hpp:34,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:35,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/9/bits/stl_map.h: In member function 'T& gatb::core::system::impl::ThreadObject<T>::operator()() [with T = gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<4> >]':
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<long long int, std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<4> >*>, std::_Select1st<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<4> >*> >, std::less<long long int>, std::allocator<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<4> >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<4> >*> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<long long int, std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<4> >*>, std::_Select1st<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<4> >*> >, std::less<long long int>, std::allocator<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<4> >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<4> >*> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<4>*, std::vector<gatb::core::tools::math::LargeInt<4>, std::allocator<gatb::core::tools::math::LargeInt<4> > > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<4>*, std::vector<gatb::core::tools::math::LargeInt<4>, std::allocator<gatb::core::tools::math::LargeInt<4> > > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<4>*, std::vector<gatb::core::tools::math::LargeInt<4>, std::allocator<gatb::core::tools::math::LargeInt<4> > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<4>*, std::vector<gatb::core::tools::math::LargeInt<4>, std::allocator<gatb::core::tools::math::LargeInt<4> > > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<4>*, std::vector<gatb::core::tools::math::LargeInt<4>, std::allocator<gatb::core::tools::math::LargeInt<4> > > >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1>, std::allocator<gatb::core::tools::math::LargeInt<1> > > >; _Distance = int; _Tp = gatb::core::tools::math::LargeInt<1>; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1>, std::allocator<gatb::core::tools::math::LargeInt<1> > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1>, std::allocator<gatb::core::tools::math::LargeInt<1> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1>, std::allocator<gatb::core::tools::math::LargeInt<1> > > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1>, std::allocator<gatb::core::tools::math::LargeInt<1> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1>, std::allocator<gatb::core::tools::math::LargeInt<1> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1>, std::allocator<gatb::core::tools::math::LargeInt<1> > > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:34,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void gatb::core::kmer::impl::DebloomAlgorithm<span>::createCFP(gatb::core::tools::collections::Collection<typename gatb::core::kmer::impl::Kmer<span>::Type>*, gatb::core::tools::misc::IProperties*, u_int64_t&) [with unsigned int span = 32]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1>, std::allocator<gatb::core::tools::math::LargeInt<1> > > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1>, std::allocator<gatb::core::tools::math::LargeInt<1> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1>, std::allocator<gatb::core::tools::math::LargeInt<1> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1>, std::allocator<gatb::core::tools::math::LargeInt<1> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:34,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/9/bits/stl_vector.h: In function 'gatb::core::tools::collections::Container<Item>* gatb::core::tools::storage::impl::StorageTools::loadContainer(gatb::core::tools::storage::impl::Group&, const string&) [with T = gatb::core::tools::math::LargeInt<1>]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1>, std::allocator<gatb::core::tools::math::LargeInt<1> > > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1>, std::allocator<gatb::core::tools::math::LargeInt<1> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1>, std::allocator<gatb::core::tools::math::LargeInt<1> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1>, std::allocator<gatb::core::tools::math::LargeInt<1> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >; _Distance = int; _Tp = gatb::core::tools::math::LargeInt<2>; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:34,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void gatb::core::kmer::impl::DebloomAlgorithm<span>::createCFP(gatb::core::tools::collections::Collection<typename gatb::core::kmer::impl::Kmer<span>::Type>*, gatb::core::tools::misc::IProperties*, u_int64_t&) [with unsigned int span = 64]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:34,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/9/bits/stl_vector.h: In function 'gatb::core::tools::collections::Container<Item>* gatb::core::tools::storage::impl::StorageTools::loadContainer(gatb::core::tools::storage::impl::Group&, const string&) [with T = gatb::core::tools::math::LargeInt<2>]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >; _Distance = int; _Tp = gatb::core::tools::math::LargeInt<3>; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:34,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void gatb::core::kmer::impl::DebloomAlgorithm<span>::createCFP(gatb::core::tools::collections::Collection<typename gatb::core::kmer::impl::Kmer<span>::Type>*, gatb::core::tools::misc::IProperties*, u_int64_t&) [with unsigned int span = 96]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:34,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/9/bits/stl_vector.h: In function 'gatb::core::tools::collections::Container<Item>* gatb::core::tools::storage::impl::StorageTools::loadContainer(gatb::core::tools::storage::impl::Group&, const string&) [with T = gatb::core::tools::math::LargeInt<3>]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<4>*, std::vector<gatb::core::tools::math::LargeInt<4>, std::allocator<gatb::core::tools::math::LargeInt<4> > > >; _Distance = int; _Tp = gatb::core::tools::math::LargeInt<4>; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<4>*, std::vector<gatb::core::tools::math::LargeInt<4>, std::allocator<gatb::core::tools::math::LargeInt<4> > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<4>*, std::vector<gatb::core::tools::math::LargeInt<4>, std::allocator<gatb::core::tools::math::LargeInt<4> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<4>*, std::vector<gatb::core::tools::math::LargeInt<4>, std::allocator<gatb::core::tools::math::LargeInt<4> > > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<4>*, std::vector<gatb::core::tools::math::LargeInt<4>, std::allocator<gatb::core::tools::math::LargeInt<4> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<4>*, std::vector<gatb::core::tools::math::LargeInt<4>, std::allocator<gatb::core::tools::math::LargeInt<4> > > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:34,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void gatb::core::kmer::impl::DebloomAlgorithm<span>::createCFP(gatb::core::tools::collections::Collection<typename gatb::core::kmer::impl::Kmer<span>::Type>*, gatb::core::tools::misc::IProperties*, u_int64_t&) [with unsigned int span = 128]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<4>*, std::vector<gatb::core::tools::math::LargeInt<4>, std::allocator<gatb::core::tools::math::LargeInt<4> > > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<4>*, std::vector<gatb::core::tools::math::LargeInt<4>, std::allocator<gatb::core::tools::math::LargeInt<4> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<4>*, std::vector<gatb::core::tools::math::LargeInt<4>, std::allocator<gatb::core::tools::math::LargeInt<4> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<4>*, std::vector<gatb::core::tools::math::LargeInt<4>, std::allocator<gatb::core::tools::math::LargeInt<4> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:34,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/9/bits/stl_vector.h: In function 'gatb::core::tools::collections::Container<Item>* gatb::core::tools::storage::impl::StorageTools::loadContainer(gatb::core::tools::storage::impl::Group&, const string&) [with T = gatb::core::tools::math::LargeInt<4>]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<4>*, std::vector<gatb::core::tools::math::LargeInt<4>, std::allocator<gatb::core::tools::math::LargeInt<4> > > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<4>*, std::vector<gatb::core::tools::math::LargeInt<4>, std::allocator<gatb::core::tools::math::LargeInt<4> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<4>*, std::vector<gatb::core::tools::math::LargeInt<4>, std::allocator<gatb::core::tools::math::LargeInt<4> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<4>*, std::vector<gatb::core::tools::math::LargeInt<4>, std::allocator<gatb::core::tools::math::LargeInt<4> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 28%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/MPHF.hpp:33,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile<Item>::fill(std::vector<Item>&, size_t)':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type]
375 | }
| ^
[ 32%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o
[ 35%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:20:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile<Item>::fill(std::vector<Item>&, size_t)':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type]
375 | }
| ^
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.hpp:25,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:20:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1>, std::allocator<gatb::core::tools::math::LargeInt<1> > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1>, std::allocator<gatb::core::tools::math::LargeInt<1> > > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1>, std::allocator<gatb::core::tools::math::LargeInt<1> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<4>*, std::vector<gatb::core::tools::math::LargeInt<4>, std::allocator<gatb::core::tools::math::LargeInt<4> > > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<4>*, std::vector<gatb::core::tools::math::LargeInt<4>, std::allocator<gatb::core::tools::math::LargeInt<4> > > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<4>*, std::vector<gatb::core::tools::math::LargeInt<4>, std::allocator<gatb::core::tools::math::LargeInt<4> > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<4>*, std::vector<gatb::core::tools::math::LargeInt<4>, std::allocator<gatb::core::tools::math::LargeInt<4> > > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<4>*, std::vector<gatb::core::tools::math::LargeInt<4>, std::allocator<gatb::core::tools::math::LargeInt<4> > > >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.hpp:25,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:20:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1>, std::allocator<gatb::core::tools::math::LargeInt<1> > > >; _Distance = int; _Tp = gatb::core::tools::math::LargeInt<1>; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1>, std::allocator<gatb::core::tools::math::LargeInt<1> > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.hpp:25,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:20:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1>, std::allocator<gatb::core::tools::math::LargeInt<1> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1>, std::allocator<gatb::core::tools::math::LargeInt<1> > > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1>, std::allocator<gatb::core::tools::math::LargeInt<1> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1>, std::allocator<gatb::core::tools::math::LargeInt<1> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1>, std::allocator<gatb::core::tools::math::LargeInt<1> > > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In member function 'void gatb::core::kmer::impl::PartitionsByVectorCommand<span>::execute() [with unsigned int span = 32]':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1>, std::allocator<gatb::core::tools::math::LargeInt<1> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1>, std::allocator<gatb::core::tools::math::LargeInt<1> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1>, std::allocator<gatb::core::tools::math::LargeInt<1> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.hpp:25,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:20:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >; _Distance = int; _Tp = gatb::core::tools::math::LargeInt<2>; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.hpp:25,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:20:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In member function 'void gatb::core::kmer::impl::PartitionsByVectorCommand<span>::execute() [with unsigned int span = 64]':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.hpp:25,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:20:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >; _Distance = int; _Tp = gatb::core::tools::math::LargeInt<3>; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.hpp:25,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:20:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In member function 'void gatb::core::kmer::impl::PartitionsByVectorCommand<span>::execute() [with unsigned int span = 96]':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.hpp:25,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:20:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<4>*, std::vector<gatb::core::tools::math::LargeInt<4>, std::allocator<gatb::core::tools::math::LargeInt<4> > > >; _Distance = int; _Tp = gatb::core::tools::math::LargeInt<4>; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<4>*, std::vector<gatb::core::tools::math::LargeInt<4>, std::allocator<gatb::core::tools::math::LargeInt<4> > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.hpp:25,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:20:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<4>*, std::vector<gatb::core::tools::math::LargeInt<4>, std::allocator<gatb::core::tools::math::LargeInt<4> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<4>*, std::vector<gatb::core::tools::math::LargeInt<4>, std::allocator<gatb::core::tools::math::LargeInt<4> > > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<4>*, std::vector<gatb::core::tools::math::LargeInt<4>, std::allocator<gatb::core::tools::math::LargeInt<4> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<4>*, std::vector<gatb::core::tools::math::LargeInt<4>, std::allocator<gatb::core::tools::math::LargeInt<4> > > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In member function 'void gatb::core::kmer::impl::PartitionsByVectorCommand<span>::execute() [with unsigned int span = 128]':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<4>*, std::vector<gatb::core::tools::math::LargeInt<4>, std::allocator<gatb::core::tools::math::LargeInt<4> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<4>*, std::vector<gatb::core::tools::math::LargeInt<4>, std::allocator<gatb::core::tools::math::LargeInt<4> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<4>*, std::vector<gatb::core::tools::math::LargeInt<4>, std::allocator<gatb::core::tools::math::LargeInt<4> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 35%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile<Item>::fill(std::vector<Item>&, size_t)':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type]
375 | }
| ^
[ 39%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp.o
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp:1:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile<Item>::fill(std::vector<Item>&, size_t)':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type]
375 | }
| ^
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp:1:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<1>]':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
113 | vasprintf (&buffer, fmt, args);
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt64]':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::misc::IHistogram::Entry]':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<32>::Count]':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:26,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp:1:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function 'static std::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
55 | vasprintf (&buffer, fmt, args);
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 39%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp.o
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp:1:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile<Item>::fill(std::vector<Item>&, size_t)':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type]
375 | }
| ^
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp:1:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<2>]':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
113 | vasprintf (&buffer, fmt, args);
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt64]':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::misc::IHistogram::Entry]':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<64>::Count]':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:26,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp:1:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function 'static std::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
55 | vasprintf (&buffer, fmt, args);
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 42%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp.o
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp:1:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile<Item>::fill(std::vector<Item>&, size_t)':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type]
375 | }
| ^
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp:1:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<3>]':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
113 | vasprintf (&buffer, fmt, args);
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt64]':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::misc::IHistogram::Entry]':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<96>::Count]':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:26,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp:1:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function 'static std::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
55 | vasprintf (&buffer, fmt, args);
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 42%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp.o
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp:1:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile<Item>::fill(std::vector<Item>&, size_t)':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type]
375 | }
| ^
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp:1:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<4>]':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
113 | vasprintf (&buffer, fmt, args);
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt64]':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::misc::IHistogram::Entry]':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<128>::Count]':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:26,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp:1:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function 'static std::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
55 | vasprintf (&buffer, fmt, args);
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 46%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/FileSystemCommon.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/FileSystemCommon.cpp:20:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp: In constructor 'gatb::core::system::ExceptionErrno::ExceptionErrno(const char*, ...)':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:24: warning: ignoring return value of 'char* strerror_r(int, char*, size_t)', declared with attribute warn_unused_result [-Wunused-result]
126 | strerror_r (errno, buffer, BUFSIZ);
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
[ 46%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o
[ 50%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o
[ 50%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o
[ 53%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o
[ 53%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o
[ 57%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadMacos.cpp.o
[ 57%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o
[ 60%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Command.cpp.o
[ 60%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Observer.cpp.o
[ 64%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Algorithm.cpp.o
[ 64%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Histogram.cpp.o
[ 67%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/OptionsParser.cpp.o
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/OptionsParser.cpp:23:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function 'static std::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
55 | vasprintf (&buffer, fmt, args);
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 67%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Progress.cpp.o
[ 71%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Property.cpp.o
[ 75%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/TimeInfo.cpp.o
[ 75%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tokenizer.cpp.o
[ 78%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tool.cpp.o
[ 78%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/XmlReader.cpp.o
[ 82%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/Storage.cpp.o
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.cpp:22:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile<Item>::fill(std::vector<Item>&, size_t)':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type]
375 | }
| ^
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.cpp:22:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt8]':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
113 | vasprintf (&buffer, fmt, args);
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 82%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o
[ 85%] Linking CXX static library ../lib/libgatbcore.a
make[4]: Leaving directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build'
[ 85%] Built target gatbcore-static
make[4]: Entering directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build'
Scanning dependencies of target mapsembler2_extremities
make[4]: Leaving directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build'
make[4]: Entering directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build'
[ 89%] Building CXX object CMakeFiles/mapsembler2_extremities.dir/src/main.cpp.o
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/gatb_core.hpp:42,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/src/mapsembler2_extremities.hpp:23,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/src/main.cpp:20:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile<Item>::fill(std::vector<Item>&, size_t)':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type]
375 | }
| ^
[ 89%] Building CXX object CMakeFiles/mapsembler2_extremities.dir/src/mapsembler2_extremities.cpp.o
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/gatb_core.hpp:42,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/src/mapsembler2_extremities.hpp:23,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/src/mapsembler2_extremities.cpp:13:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile<Item>::fill(std::vector<Item>&, size_t)':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type]
375 | }
| ^
[ 92%] Linking CXX executable mapsembler2_extremities
make[4]: Leaving directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build'
[ 92%] Built target mapsembler2_extremities
make[4]: Entering directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build'
Scanning dependencies of target dbginfo
make[4]: Leaving directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build'
make[4]: Entering directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build'
[ 96%] Building CXX object ext/gatb-core/tools/CMakeFiles/dbginfo.dir/dbginfo.cpp.o
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/gatb_core.hpp:42,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/tools/dbginfo.cpp:20:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile<Item>::fill(std::vector<Item>&, size_t)':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type]
375 | }
| ^
[ 96%] Linking CXX executable ../bin/dbginfo
make[4]: Leaving directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build'
[ 96%] Built target dbginfo
make[4]: Entering directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build'
Scanning dependencies of target dbgh5
make[4]: Leaving directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build'
make[4]: Entering directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build'
[100%] Building CXX object ext/gatb-core/tools/CMakeFiles/dbgh5.dir/dbgh5.cpp.o
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/gatb_core.hpp:42,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/tools/dbgh5.cpp:20:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile<Item>::fill(std::vector<Item>&, size_t)':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type]
375 | }
| ^
[100%] Linking CXX executable ../bin/dbgh5
make[4]: Leaving directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build'
[100%] Built target dbgh5
make[4]: Entering directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build'
Scanning dependencies of target emphf_copyasis
make[4]: Leaving directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build'
make[4]: Entering directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build'
make[4]: Leaving directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build'
[100%] Built target emphf_copyasis
make[3]: Leaving directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build'
make[2]: Leaving directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build'
cd mapsembler2_extend && make k=29
make[2]: Entering directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extend'
g++ -o ../minia/Pool.o -c ../minia/Pool.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial
g++ -o ../minia/Bank.o -c ../minia/Bank.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial
../minia/Bank.cpp: In member function 'void Bank::init(char**, int)':
../minia/Bank.cpp:282:19: warning: ignoring return value of 'char* strerror_r(int, char*, size_t)', declared with attribute warn_unused_result [-Wunused-result]
282 | strerror_r( errno, buffer, BUFSIZ ); // get string message from errno
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
../minia/Bank.cpp: In member function 'void BinaryBank::open(bool)':
../minia/Bank.cpp:713:19: warning: ignoring return value of 'char* strerror_r(int, char*, size_t)', declared with attribute warn_unused_result [-Wunused-result]
713 | strerror_r( errno, buffer, BUFSIZ ); // get string message from errno
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
../minia/Bank.cpp: In member function 'void BinaryReads::open(bool)':
../minia/Bank.cpp:798:19: warning: ignoring return value of 'char* strerror_r(int, char*, size_t)', declared with attribute warn_unused_result [-Wunused-result]
798 | strerror_r( errno, buffer, BUFSIZ ); // get string message from errno
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
../minia/Bank.cpp: In member function 'int KmersBuffer::readkmers()':
../minia/Bank.cpp:988:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
988 | fread(buffer,sizeof( char),block_size, binary_read_file); // read a block of sequences into the buffer
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -o ../minia/Bloom.o -c ../minia/Bloom.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial
../minia/Bloom.cpp: In member function 'void Bloom::load(char*)':
../minia/Bloom.cpp:257:7: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
257 | fread(blooma, sizeof(unsigned char), nchar, file_data);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -o ../minia/Hash16.o -c ../minia/Hash16.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial
g++ -o ../minia/Terminator.o -c ../minia/Terminator.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial
../minia/Terminator.cpp: In constructor 'BranchingTerminator::BranchingTerminator(BinaryBank*, BinaryBank*, Bloom*, Set*)':
../minia/Terminator.cpp:337:60: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'unsigned int' [-Wformat=]
337 | fprintf (stderr,"\nLoaded %lld branching kmers x %lu B = %.1f MB\n",nb_branching_kmers,sizeof(cell<kmer_type>),((1<<NBITS_TERMINATOR)*sizeof(cell<kmer_type>)*1.0)/1024.0/1024.0);
| ~~^ ~~~~~~~~~~~~~~~~~~~~~~~
| | |
| long unsigned int unsigned int
| %u
g++ -o ../minia/Kmer.o -c ../minia/Kmer.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial
g++ -o ../minia/Traversal.o -c ../minia/Traversal.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial
../minia/Traversal.cpp: In member function 'bool MonumentTraversal::find_starting_kmer(kmer_type, kmer_type&)':
../minia/Traversal.cpp:352:112: warning: format '%lu' expects argument of type 'long unsigned int', but argument 5 has type 'std::set<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
352 | if (debug) printf("depth %d useless int %d and starting belongs %d nb involved nodes %lu\n",frontline.depth,useless_int,all_involved_extensions.find(starting_kmer) != all_involved_extensions.end(),all_involved_extensions.size());
| ~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| | |
| long unsigned int std::set<long long unsigned int>::size_type {aka unsigned int}
| %u
../minia/Traversal.cpp: In member function 'bool MonumentTraversal::validate_consensuses(std::set<std::__cxx11::basic_string<char> >, char*, int&)':
../minia/Traversal.cpp:820:55: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'std::__cxx11::basic_string<char>::size_type' {aka 'unsigned int'} [-Wformat=]
820 | if (debug) printf("bubble path %d: %s (len=%lu)\n",path_number,(*it).c_str(),(*it).length());
| ~~^ ~~~~~~~~~~~~~~
| | |
| long unsigned int std::__cxx11::basic_string<char>::size_type {aka unsigned int}
| %u
../minia/Traversal.cpp:841:26: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::set<std::__cxx11::basic_string<char> >::size_type' {aka 'unsigned int'} [-Wformat=]
841 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev);
| ~~^ ~~~~~~~~~~~~~~~~~~
| | |
| long unsigned int std::set<std::__cxx11::basic_string<char> >::size_type {aka unsigned int}
| %u
g++ -o ../minia/LinearCounter.o -c ../minia/LinearCounter.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial
g++ -o ../minia/Set.o -c ../minia/Set.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial
../minia/Set.cpp: In member function 'void AssocSet::print_total_size()':
../minia/Set.cpp:132:31: warning: format '%li' expects argument of type 'long int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
132 | printf("Assoc set size: %li\n",liste.size());
| ~~^ ~~~~~~~~~~~~
| | |
| long int std::vector<long long unsigned int>::size_type {aka unsigned int}
| %i
../minia/Set.cpp:133:45: warning: format '%li' expects argument of type 'long int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
133 | printf("Assoc set capacity: listekmer %li liste val%li\n",liste.capacity(),liste_value.capacity());
| ~~^ ~~~~~~~~~~~~~~~~
| | |
| long int std::vector<long long unsigned int>::size_type {aka unsigned int}
| %i
../minia/Set.cpp:133:59: warning: format '%li' expects argument of type 'long int', but argument 3 has type 'std::vector<short unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
133 | printf("Assoc set capacity: listekmer %li liste val%li\n",liste.capacity(),liste_value.capacity());
| ~~^ ~~~~~~~~~~~~~~~~~~~~~~
| | |
| long int std::vector<short unsigned int>::size_type {aka unsigned int}
| %i
../minia/Set.cpp:134:15: warning: format '%li' expects argument of type 'long int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
134 | printf("%li *%li + %li* %li = %li MB \n",liste.capacity(),sizeof(set_elem),liste_value.capacity(),sizeof(set_value_t),
| ~~^ ~~~~~~~~~~~~~~~~
| | |
| long int std::vector<long long unsigned int>::size_type {aka unsigned int}
| %i
../minia/Set.cpp:134:20: warning: format '%li' expects argument of type 'long int', but argument 3 has type 'unsigned int' [-Wformat=]
134 | printf("%li *%li + %li* %li = %li MB \n",liste.capacity(),sizeof(set_elem),liste_value.capacity(),sizeof(set_value_t),
| ~~^ ~~~~~~~~~~~~~~~~
| | |
| long int unsigned int
| %i
../minia/Set.cpp:134:27: warning: format '%li' expects argument of type 'long int', but argument 4 has type 'std::vector<short unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
134 | printf("%li *%li + %li* %li = %li MB \n",liste.capacity(),sizeof(set_elem),liste_value.capacity(),sizeof(set_value_t),
| ~~^ ~~~~~~~~~~~~~~~~~~~~~~
| | |
| long int std::vector<short unsigned int>::size_type {aka unsigned int}
| %i
../minia/Set.cpp:134:32: warning: format '%li' expects argument of type 'long int', but argument 5 has type 'unsigned int' [-Wformat=]
134 | printf("%li *%li + %li* %li = %li MB \n",liste.capacity(),sizeof(set_elem),liste_value.capacity(),sizeof(set_value_t),
| ~~^ ~~~~~~~~~~~~~~~~~~~
| | |
| long int unsigned int
| %i
../minia/Set.cpp:134:39: warning: format '%li' expects argument of type 'long int', but argument 6 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
134 | printf("%li *%li + %li* %li = %li MB \n",liste.capacity(),sizeof(set_elem),liste_value.capacity(),sizeof(set_value_t),
| ~~^
| |
| long int
| %i
135 | (liste.capacity()*sizeof(set_elem)+liste_value.capacity()*sizeof(set_value_t))/1024/1024
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| |
| std::vector<long long unsigned int>::size_type {aka unsigned int}
../minia/Set.cpp: In member function 'void AssocPairedSet::print()':
../minia/Set.cpp:242:21: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
242 | printf("print %lu elems \n",liste.size());
| ~~^ ~~~~~~~~~~~~
| | |
| long unsigned int std::vector<long long unsigned int>::size_type {aka unsigned int}
| %u
../minia/Set.cpp: In member function 'void AssocPairedSet::print_total_size()':
../minia/Set.cpp:298:38: warning: format '%li' expects argument of type 'long int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
298 | printf("Assoc paired set size: %li\n",liste.size());
| ~~^ ~~~~~~~~~~~~
| | |
| long int std::vector<long long unsigned int>::size_type {aka unsigned int}
| %i
../minia/Set.cpp:299:52: warning: format '%li' expects argument of type 'long int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
299 | printf("Assoc paired set capacity: listekmer %li liste val%li\n",liste.capacity(),liste_value.capacity());
| ~~^ ~~~~~~~~~~~~~~~~
| | |
| long int std::vector<long long unsigned int>::size_type {aka unsigned int}
| %i
../minia/Set.cpp:299:66: warning: format '%li' expects argument of type 'long int', but argument 3 has type 'std::vector<pair_nt_kmer>::size_type' {aka 'unsigned int'} [-Wformat=]
299 | printf("Assoc paired set capacity: listekmer %li liste val%li\n",liste.capacity(),liste_value.capacity());
| ~~^ ~~~~~~~~~~~~~~~~~~~~~~
| | |
| long int std::vector<pair_nt_kmer>::size_type {aka unsigned int}
| %i
../minia/Set.cpp:300:15: warning: format '%li' expects argument of type 'long int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
300 | printf("%li *%li + %li* %li = %li MB \n",liste.capacity(),sizeof(set_elem),liste_value.capacity(),sizeof(set_value_t),
| ~~^ ~~~~~~~~~~~~~~~~
| | |
| long int std::vector<long long unsigned int>::size_type {aka unsigned int}
| %i
../minia/Set.cpp:300:20: warning: format '%li' expects argument of type 'long int', but argument 3 has type 'unsigned int' [-Wformat=]
300 | printf("%li *%li + %li* %li = %li MB \n",liste.capacity(),sizeof(set_elem),liste_value.capacity(),sizeof(set_value_t),
| ~~^ ~~~~~~~~~~~~~~~~
| | |
| long int unsigned int
| %i
../minia/Set.cpp:300:27: warning: format '%li' expects argument of type 'long int', but argument 4 has type 'std::vector<pair_nt_kmer>::size_type' {aka 'unsigned int'} [-Wformat=]
300 | printf("%li *%li + %li* %li = %li MB \n",liste.capacity(),sizeof(set_elem),liste_value.capacity(),sizeof(set_value_t),
| ~~^ ~~~~~~~~~~~~~~~~~~~~~~
| | |
| long int std::vector<pair_nt_kmer>::size_type {aka unsigned int}
| %i
../minia/Set.cpp:300:32: warning: format '%li' expects argument of type 'long int', but argument 5 has type 'unsigned int' [-Wformat=]
300 | printf("%li *%li + %li* %li = %li MB \n",liste.capacity(),sizeof(set_elem),liste_value.capacity(),sizeof(set_value_t),
| ~~^ ~~~~~~~~~~~~~~~~~~~
| | |
| long int unsigned int
| %i
../minia/Set.cpp:300:39: warning: format '%li' expects argument of type 'long int', but argument 6 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
300 | printf("%li *%li + %li* %li = %li MB \n",liste.capacity(),sizeof(set_elem),liste_value.capacity(),sizeof(set_value_t),
| ~~^
| |
| long int
| %i
301 | (liste.capacity()*sizeof(set_elem)+liste_value.capacity()*sizeof(set_value_t))/1024/1024
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| |
| std::vector<long long unsigned int>::size_type {aka unsigned int}
../minia/Set.cpp: In member function 'void AssocPairedSet::load(char*)':
../minia/Set.cpp:290:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
290 | fread(&liste_value[0], sizeof(pair_nt_kmer_t), liste_value.size(), file_data);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from ../minia/Set.h:10,
from ../minia/Set.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from ../minia/Set.h:10,
from ../minia/Set.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual void ListSet::insert(set_elem)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void AssocPairedSet::load_branching(BinaryBank*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from ../minia/Pool.h:11,
from ../minia/Hash16.h:12,
from ../minia/Set.h:6,
from ../minia/Set.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1879:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1879 | __final_insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1879:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from ../minia/Pool.h:11,
from ../minia/Hash16.h:12,
from ../minia/Set.h:6,
from ../minia/Set.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from ../minia/Pool.h:11,
from ../minia/Hash16.h:12,
from ../minia/Set.h:6,
from ../minia/Set.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In member function 'virtual void AssocPairedSet::finalize()':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1970:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1970 | std::__final_insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In member function 'virtual void ListSet::finalize()':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1970:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1970 | std::__final_insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In member function 'virtual void AssocSet::finalize()':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1970:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1970 | std::__final_insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
g++ -o ../minia/Utils.o -c ../minia/Utils.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial
../minia/Utils.cpp: In function 'void end_kmer_count_partition(bool, Hash16*)':
../minia/Utils.cpp:187:14: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result]
187 | ftruncate(fileno(F_kmercpt_write), 0); //erase previous file
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../minia/Utils.cpp:199:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
199 | fread(&cptk, sizeof(cptk), 1, F_kmercpt_read);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../minia/Utils.cpp:225:18: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result]
225 | ftruncate(fileno(F_kmercpt_read), 0); //erase previous file
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../minia/Utils.cpp: In function 'char* return_file_name(const char*)':
../minia/Utils.cpp:28:32: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=]
28 | sprintf(fileName,"%s.%s",prefix,suffix);
| ^
In file included from /usr/include/stdio.h:867,
from ../minia/Utils.h:1,
from ../minia/Utils.cpp:1:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 1025) into a destination of size 1024
36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
37 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -o ../minia/SortingCount.o -c ../minia/SortingCount.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial
../minia/SortingCount.cpp: In function 'void sorting_count(Bank*, char*, int, int, bool, int, bool)':
../minia/SortingCount.cpp:56:15: warning: ignoring return value of 'char* getcwd(char*, size_t)', declared with attribute warn_unused_result [-Wunused-result]
56 | getcwd(current_path,sizeof(current_path));
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../minia/SortingCount.cpp:283:15: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result]
283 | system("echo 3 > /proc/sys/vm/drop_caches");
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../minia/SortingCount.cpp:537:19: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result]
537 | system("echo 3 > /proc/sys/vm/drop_caches");
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from ../minia/SortingCount.h:8,
from ../minia/SortingCount.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from ../minia/Utils.h:9,
from ../minia/SortingCount.h:17,
from ../minia/SortingCount.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from ../minia/Utils.h:9,
from ../minia/SortingCount.h:17,
from ../minia/SortingCount.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from ../minia/Utils.h:9,
from ../minia/SortingCount.h:17,
from ../minia/SortingCount.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../minia/SortingCount.cpp: In function 'void sorting_count(Bank*, char*, int, int, bool, int, bool)':
../minia/SortingCount.cpp:45:25: warning: '%s' directive writing up to 1023 bytes into a region of size 512 [-Wformat-overflow=]
45 | sprintf(p_buf, "%s/%s", temp_dir, ep->d_name);
| ^~ ~~~~~~~~
In file included from /usr/include/stdio.h:867,
from ../minia/SortingCount.h:1,
from ../minia/SortingCount.cpp:1:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 2 and 1280 bytes into a destination of size 512
36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
37 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from ../minia/SortingCount.h:8,
from ../minia/SortingCount.cpp:1:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from ../minia/Utils.h:9,
from ../minia/SortingCount.h:17,
from ../minia/SortingCount.cpp:1:
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
../minia/SortingCount.cpp:844:1: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
844 | }
| ^
g++ -o ../minia/Debloom.o -c ../minia/Debloom.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial
../minia/Debloom.cpp: In function 'void end_debloom_partition(bool)':
../minia/Debloom.cpp:29:11: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result]
29 | ftruncate(fileno(F_debloom_write), 0); //erase previous file
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -o ../minia/OAHash.o -c ../minia/OAHash.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial
g++ -o commons.o -c commons.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial
g++ -o IterativeExtensions.o -c IterativeExtensions.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial
In file included from /usr/include/c++/9/vector:72,
from ../minia/Set.h:10,
from ../minia/Terminator.h:13,
from IterativeExtensions.h:42,
from IterativeExtensions.cpp:38:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const kmer_strand_depth&}; _Tp = kmer_strand_depth; _Alloc = std::allocator<kmer_strand_depth>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<kmer_strand_depth>::iterator' {aka '__gnu_cxx::__normal_iterator<kmer_strand_depth*, std::vector<kmer_strand_depth> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {kmer_strand_depth}; _Tp = kmer_strand_depth; _Alloc = std::allocator<kmer_strand_depth>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<kmer_strand_depth>::iterator' {aka '__gnu_cxx::__normal_iterator<kmer_strand_depth*, std::vector<kmer_strand_depth> >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {kmer_strand_depth}; _Tp = kmer_strand_depth; _Alloc = std::allocator<kmer_strand_depth>]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<kmer_strand_depth*, std::vector<kmer_strand_depth> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from ../minia/Set.h:10,
from ../minia/Terminator.h:13,
from IterativeExtensions.h:42,
from IterativeExtensions.cpp:38:
/usr/include/c++/9/bits/stl_vector.h: In static member function 'static void IterativeExtensions::construct_linear_seqs(std::string, std::string, int, std::string, int, int, parcours_t, bool)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<kmer_strand_depth*, std::vector<kmer_strand_depth> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In static member function 'static void IterativeExtensions::construct_linear_seqs_paired(std::string, std::string, int, std::string, int, int)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<kmer_strand_depth*, std::vector<kmer_strand_depth> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
g++ -o Fragment_Bank.o -c Fragment_Bank.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial
g++ -o Fragment.o -c Fragment.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial
g++ -o GraphOutput.o -c GraphOutput.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial
GraphOutput.cpp: In member function 'void GraphOutput::print_starter_head(int, char*)':
GraphOutput.cpp:145:108: warning: format '%ld' expects argument of type 'long int', but argument 6 has type 'size_t' {aka 'unsigned int'} [-Wformat=]
145 | fprintf(starters_file,"\"Starter_%d\":{\"data\":{\"id\":\"S%d\", \"sequence\":\"%s\", \"length\":%ld,\n", index,index, sequence, strlen(sequence));
| ~~^ ~~~~~~~~~~~~~~~~
| | |
| long int size_t {aka unsigned int}
| %d
GraphOutput.cpp: In member function 'void GraphOutput::print_node(long int, char*)':
GraphOutput.cpp:204:99: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'size_t' {aka 'unsigned int'} [-Wformat=]
204 | fprintf(nodes_file," { \"data\": { \"id\":\"n%ld\", \"sequence\":\"%s\", \"length\":%ld}}\n",index,ascii_node, strlen(ascii_node));
| ~~^ ~~~~~~~~~~~~~~~~~~
| | |
| long int size_t {aka unsigned int}
| %d
g++ -o mapsembler_extend ../minia/Pool.o ../minia/Bank.o ../minia/Bloom.o ../minia/Hash16.o ../minia/Terminator.o ../minia/Kmer.o ../minia/Traversal.o ../minia/LinearCounter.o ../minia/Set.o ../minia/Utils.o ../minia/SortingCount.o ../minia/Debloom.o ../minia/OAHash.o commons.o IterativeExtensions.o Fragment_Bank.o Fragment.o GraphOutput.o mapsembler_extend.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial
mapsembler_extend.cpp: In function 'int main(int, char**)':
mapsembler_extend.cpp:260:36: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'unsigned int' [-Wformat=]
260 | fprintf (stderr,"taille cell %lu \n", sizeof(cell<kmer_type>));
| ~~^ ~~~~~~~~~~~~~~~~~~~~~~~
| | |
| | unsigned int
| long unsigned int
| %u
mapsembler_extend.cpp:320:76: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result]
320 | command = string("rm -f ")+string(prefix_trashable)+string("*"); system((char *)command.c_str());
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
make[2]: Leaving directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extend'
cd kissreads_graph && make k=29
make[2]: Entering directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/kissreads_graph'
g++ -o block_allocator.o -c block_allocator.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64
g++ -o DeBruijnGraph.o -c DeBruijnGraph.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64
DeBruijnGraph.cpp: In member function 'int DBG::output_graph(FILE*, int, int&, bool, bool)':
DeBruijnGraph.cpp:405:38: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=]
405 | fprintf(out,", \"length\": %lu", strlen(all_nodes[i]->fragment->fragment_sequence));
| ~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| | |
| | size_t {aka unsigned int}
| long unsigned int
| %u
In file included from /usr/include/string.h:495,
from Fragment.h:2,
from DeBruijnGraph.h:8,
from DeBruijnGraph.cpp:8:
In function 'char* strncpy(char*, const char*, size_t)',
inlined from 'void DBG::set_firstNodeId(char*)' at DeBruijnGraph.cpp:373:29:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' specified bound depends on the length of the source argument [-Wstringop-overflow=]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
DeBruijnGraph.cpp: In function 'void DBG::set_firstNodeId(char*)':
DeBruijnGraph.cpp:373:29: note: length computed here
373 | if(set_line!=NULL) strncpy(set_line,firstNodeId,strlen(firstNodeId));
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -o Fragment.o -c Fragment.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64
g++ -o json.o -c json.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64
g++ -o read_coherence_mapsembler/libchash.o -c read_coherence_mapsembler/libchash.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64
read_coherence_mapsembler/libchash.cpp: In function 'HTItem* HashFind(HashTable*, u_long)':
read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
199 | fread(&_ul, sizeof(_ul), 1, (fp)); \
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
read_coherence_mapsembler/libchash.cpp:226:7: note: in expansion of macro 'READ_UL'
226 | READ_UL((ht)->fpData, cchData); \
| ^~~~~~~
read_coherence_mapsembler/libchash.cpp:1227:3: note: in expansion of macro 'LOAD_AND_RETURN'
1227 | LOAD_AND_RETURN(ht, Find(ht, KEY_TRUNC(ht, key), NULL));
| ^~~~~~~~~~~~~~~
read_coherence_mapsembler/libchash.cpp: In function 'HTItem* HashFindLast(HashTable*)':
read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
199 | fread(&_ul, sizeof(_ul), 1, (fp)); \
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
read_coherence_mapsembler/libchash.cpp:226:7: note: in expansion of macro 'READ_UL'
226 | READ_UL((ht)->fpData, cchData); \
| ^~~~~~~
read_coherence_mapsembler/libchash.cpp:1232:4: note: in expansion of macro 'LOAD_AND_RETURN'
1232 | LOAD_AND_RETURN(ht, ht->posLastFind);
| ^~~~~~~~~~~~~~~
read_coherence_mapsembler/libchash.cpp: In function 'HTItem* HashFirstBucket(HashTable*)':
read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
199 | fread(&_ul, sizeof(_ul), 1, (fp)); \
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
read_coherence_mapsembler/libchash.cpp:226:7: note: in expansion of macro 'READ_UL'
226 | READ_UL((ht)->fpData, cchData); \
| ^~~~~~~
read_coherence_mapsembler/libchash.cpp:1296:3: note: in expansion of macro 'LOAD_AND_RETURN'
1296 | LOAD_AND_RETURN(ht, retval);
| ^~~~~~~~~~~~~~~
read_coherence_mapsembler/libchash.cpp: In function 'HTItem* HashNextBucket(HashTable*)':
read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
199 | fread(&_ul, sizeof(_ul), 1, (fp)); \
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
read_coherence_mapsembler/libchash.cpp:226:7: note: in expansion of macro 'READ_UL'
226 | READ_UL((ht)->fpData, cchData); \
| ^~~~~~~
read_coherence_mapsembler/libchash.cpp:1306:3: note: in expansion of macro 'LOAD_AND_RETURN'
1306 | LOAD_AND_RETURN(ht, retval);
| ^~~~~~~~~~~~~~~
read_coherence_mapsembler/libchash.cpp: In function 'HashTable* HashDoLoad(FILE*, char* (*)(FILE*, int), HashTable*)':
read_coherence_mapsembler/libchash.cpp:1413:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
1413 | fread(szMagicKey, 1, 4, fp);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~
read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
199 | fread(&_ul, sizeof(_ul), 1, (fp)); \
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
read_coherence_mapsembler/libchash.cpp:1422:4: note: in expansion of macro 'READ_UL'
1422 | READ_UL(fp, ht->cchKey);
| ^~~~~~~
read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
199 | fread(&_ul, sizeof(_ul), 1, (fp)); \
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
read_coherence_mapsembler/libchash.cpp:1423:4: note: in expansion of macro 'READ_UL'
1423 | READ_UL(fp, ht->cItems);
| ^~~~~~~
read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
199 | fread(&_ul, sizeof(_ul), 1, (fp)); \
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
read_coherence_mapsembler/libchash.cpp:1424:4: note: in expansion of macro 'READ_UL'
1424 | READ_UL(fp, ht->cDeletedItems);
| ^~~~~~~
read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
199 | fread(&_ul, sizeof(_ul), 1, (fp)); \
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
read_coherence_mapsembler/libchash.cpp:1427:4: note: in expansion of macro 'READ_UL'
1427 | READ_UL(fp, cchKey);
| ^~~~~~~
read_coherence_mapsembler/libchash.cpp:1429:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
1429 | fread(rgchKeys, 1, cchKey, fp);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
199 | fread(&_ul, sizeof(_ul), 1, (fp)); \
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
read_coherence_mapsembler/libchash.cpp:1434:7: note: in expansion of macro 'READ_UL'
1434 | READ_UL(fp, bck->data); /* all we need if dataRead is NULL */
| ^~~~~~~
read_coherence_mapsembler/libchash.cpp: In function 'u_long SparseRead(FILE*, SparseBin**)':
read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
199 | fread(&_ul, sizeof(_ul), 1, (fp)); \
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
read_coherence_mapsembler/libchash.cpp:628:4: note: in expansion of macro 'READ_UL'
628 | READ_UL(fp, cBuckets); /* actually, cBuckets is stored */
| ^~~~~~~
read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
199 | fread(&_ul, sizeof(_ul), 1, (fp)); \
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
read_coherence_mapsembler/libchash.cpp:633:3: note: in expansion of macro 'READ_UL'
633 | READ_UL(fp, (*pbinSparse)[i].bmOccupied[j]);
| ^~~~~~~
g++ -o read_coherence_mapsembler/couple.o -c read_coherence_mapsembler/couple.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64
g++ -o read_coherence_mapsembler/misc_tools.o -c read_coherence_mapsembler/misc_tools.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64
g++ -o read_coherence_mapsembler/read_groups.o -c read_coherence_mapsembler/read_groups.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64
g++ -o read_coherence_mapsembler/consensus_common.o -c read_coherence_mapsembler/consensus_common.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64
g++ -o read_coherence_mapsembler/list.o -c read_coherence_mapsembler/list.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64
g++ -o read_coherence_mapsembler/read_coherence.o -c read_coherence_mapsembler/read_coherence.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64
read_coherence_mapsembler/read_coherence.cpp: In function 'char** read_coherent_homologs(hash_t, const char*, int, int, int, int, int*)':
read_coherence_mapsembler/read_coherence.cpp:988:39: warning: format '%X' expects argument of type 'unsigned int', but argument 3 has type 'group_t' {aka 'list_*'} [-Wformat=]
988 | "error group %X: recomputed number of substitutions (%d) not matching dynamic number of substitutions (%d) (so i'm glad i coded this test)\n fragment: %s\nconsensus:%s\n",
| ~^
| |
| unsigned int
989 | current_read_group, number_substitutions,
| ~~~~~~~~~~~~~~~~~~
| |
| group_t {aka list_*}
read_coherence_mapsembler/read_coherence.cpp:1002:39: warning: format '%X' expects argument of type 'unsigned int', but argument 3 has type 'group_t' {aka 'list_*'} [-Wformat=]
1002 | "error group %X: recomputed consensus (%s) not matching dynamic consensus (%s) (so i'm glad i coded this test)\n fragment: %s\n",
| ~^
| |
| unsigned int
1003 | current_read_group, substarters[*nb_consensuses],
| ~~~~~~~~~~~~~~~~~~
| |
| group_t {aka list_*}
g++ -o read_coherence_mapsembler/interface_libchash.o -c read_coherence_mapsembler/interface_libchash.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64
g++ -o commons.o -c commons.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64
g++ -o Loader.o -c Loader.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64
Loader.cpp: In function 'void load_json_rec_global(json_value*, int)':
Loader.cpp:114:45: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'std::vector<Node_dbg*>::size_type' {aka 'unsigned int'} [-Wformat=]
114 | printf("adding node %s = %ld\n", value->string_value, global_dbg->all_nodes.size());
| ~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| | |
| long int std::vector<Node_dbg*>::size_type {aka unsigned int}
| %d
g++ -o ReadMapper.o -c ReadMapper.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64
g++ -o kissreads_graph block_allocator.o DeBruijnGraph.o Fragment.o json.o read_coherence_mapsembler/libchash.o read_coherence_mapsembler/couple.o read_coherence_mapsembler/misc_tools.o read_coherence_mapsembler/read_groups.o read_coherence_mapsembler/consensus_common.o read_coherence_mapsembler/list.o read_coherence_mapsembler/read_coherence.o read_coherence_mapsembler/interface_libchash.o commons.o ../minia/Kmer.o ../minia/Bank.o Loader.o ReadMapper.o KissReadsGraph.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial
make[2]: Leaving directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/kissreads_graph'
cd kissreads && make k=29
make[2]: Entering directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/kissreads'
gcc -o src/coherent_algorithm.o -c src/coherent_algorithm.c -O3 -lz -fopenmp -DOMP -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/
gcc -o src/commons.o -c src/commons.c -O3 -lz -fopenmp -DOMP -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/
gcc -o src/couple.o -c src/couple.c -O3 -lz -fopenmp -DOMP -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/
gcc -o src/extension_algorithm.o -c src/extension_algorithm.c -O3 -lz -fopenmp -DOMP -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/
gcc -o src/fragment_index.o -c src/fragment_index.c -O3 -lz -fopenmp -DOMP -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/
gcc -o src/kissReads.o -c src/kissReads.c -O3 -lz -fopenmp -DOMP -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/
gcc -o src/list.o -c src/list.c -O3 -lz -fopenmp -DOMP -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/
gcc -o src/outputs.o -c src/outputs.c -O3 -lz -fopenmp -DOMP -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/
gcc -o src/interface_libchash.o -c src/interface_libchash.c -O3 -lz -fopenmp -DOMP -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/
gcc -o src/libchash.o -c src/libchash.c -O3 -lz -fopenmp -DOMP -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/
src/libchash.c: In function 'HashFind':
src/libchash.c:193:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
193 | fread(&_ul, sizeof(_ul), 1, (fp)); \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
src/libchash.c:220:7: note: in expansion of macro 'READ_UL'
220 | READ_UL((ht)->fpData, cchData); \
| ^~~~~~~
src/libchash.c:1221:4: note: in expansion of macro 'LOAD_AND_RETURN'
1221 | LOAD_AND_RETURN(ht, Find(ht, KEY_TRUNC(ht, key), NULL));
| ^~~~~~~~~~~~~~~
src/libchash.c: In function 'HashFindLast':
src/libchash.c:193:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
193 | fread(&_ul, sizeof(_ul), 1, (fp)); \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
src/libchash.c:220:7: note: in expansion of macro 'READ_UL'
220 | READ_UL((ht)->fpData, cchData); \
| ^~~~~~~
src/libchash.c:1226:4: note: in expansion of macro 'LOAD_AND_RETURN'
1226 | LOAD_AND_RETURN(ht, ht->posLastFind);
| ^~~~~~~~~~~~~~~
src/libchash.c: In function 'HashFirstBucket':
src/libchash.c:193:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
193 | fread(&_ul, sizeof(_ul), 1, (fp)); \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
src/libchash.c:220:7: note: in expansion of macro 'READ_UL'
220 | READ_UL((ht)->fpData, cchData); \
| ^~~~~~~
src/libchash.c:1290:3: note: in expansion of macro 'LOAD_AND_RETURN'
1290 | LOAD_AND_RETURN(ht, retval);
| ^~~~~~~~~~~~~~~
src/libchash.c: In function 'HashNextBucket':
src/libchash.c:193:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
193 | fread(&_ul, sizeof(_ul), 1, (fp)); \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
src/libchash.c:220:7: note: in expansion of macro 'READ_UL'
220 | READ_UL((ht)->fpData, cchData); \
| ^~~~~~~
src/libchash.c:1300:3: note: in expansion of macro 'LOAD_AND_RETURN'
1300 | LOAD_AND_RETURN(ht, retval);
| ^~~~~~~~~~~~~~~
src/libchash.c: In function 'HashDoLoad':
src/libchash.c:1407:4: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
1407 | fread(szMagicKey, 1, 4, fp);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~
src/libchash.c:193:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
193 | fread(&_ul, sizeof(_ul), 1, (fp)); \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
src/libchash.c:1416:4: note: in expansion of macro 'READ_UL'
1416 | READ_UL(fp, ht->cchKey);
| ^~~~~~~
src/libchash.c:193:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
193 | fread(&_ul, sizeof(_ul), 1, (fp)); \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
src/libchash.c:1417:4: note: in expansion of macro 'READ_UL'
1417 | READ_UL(fp, ht->cItems);
| ^~~~~~~
src/libchash.c:193:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
193 | fread(&_ul, sizeof(_ul), 1, (fp)); \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
src/libchash.c:1418:4: note: in expansion of macro 'READ_UL'
1418 | READ_UL(fp, ht->cDeletedItems);
| ^~~~~~~
src/libchash.c:193:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
193 | fread(&_ul, sizeof(_ul), 1, (fp)); \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
src/libchash.c:1421:4: note: in expansion of macro 'READ_UL'
1421 | READ_UL(fp, cchKey);
| ^~~~~~~
src/libchash.c:1423:4: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
1423 | fread(rgchKeys, 1, cchKey, fp);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
src/libchash.c:193:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
193 | fread(&_ul, sizeof(_ul), 1, (fp)); \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
src/libchash.c:1428:7: note: in expansion of macro 'READ_UL'
1428 | READ_UL(fp, bck->data); /* all we need if dataRead is NULL */
| ^~~~~~~
src/libchash.c: In function 'SparseRead':
src/libchash.c:193:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
193 | fread(&_ul, sizeof(_ul), 1, (fp)); \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
src/libchash.c:622:4: note: in expansion of macro 'READ_UL'
622 | READ_UL(fp, cBuckets); /* actually, cBuckets is stored */
| ^~~~~~~
src/libchash.c:193:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
193 | fread(&_ul, sizeof(_ul), 1, (fp)); \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
src/libchash.c:627:3: note: in expansion of macro 'READ_UL'
627 | READ_UL(fp, (*pbinSparse)[i].bmOccupied[j]);
| ^~~~~~~
gcc -o kissreads src/coherent_algorithm.o src/commons.o src/couple.o src/extension_algorithm.o src/fragment_index.o src/kissReads.o src/list.o src/outputs.o src/interface_libchash.o src/libchash.o -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -lm -O3 -lz -lgomp
#################
# Compilation OK#
#################
make[2]: Leaving directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/kissreads'
make[1]: Leaving directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg'
create-stamp debian/debhelper-build-stamp
dh_testroot -a
dh_prep -a
debian/rules override_dh_install
make[1]: Entering directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg'
mv ./kissreads/kissreads ./kissreads/mapsembler2_kissreads
mv ./kissreads_graph/kissreads_graph ./kissreads_graph/mapsembler2_kissreads_graph
cp run_mapsembler2_pipeline.sh run_mapsembler2_pipeline
dh_install
make[1]: Leaving directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg'
dh_installdocs -a
dh_installchangelogs -a
dh_installexamples -a
dh_installman -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_dwz -a -a
dh_strip -a -a
dh_makeshlibs -a -a
dh_shlibdeps -a -a
dpkg-shlibdeps: warning: debian/mapsembler2/usr/bin/mapsembler2_extremities contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/mapsembler2/usr/bin/mapsembler2_kissreads_graph contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/mapsembler2/usr/bin/mapsembler_extend contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mapsembler2/usr/bin/mapsembler2_kissreads debian/mapsembler2/usr/bin/mapsembler2_extremities debian/mapsembler2/usr/bin/mapsembler2_kissreads_graph debian/mapsembler2/usr/bin/mapsembler_extend were not linked against ld-linux-armhf.so.3 (they use none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'mapsembler2' in '../mapsembler2_2.2.4+dfsg-4_armhf.deb'.
dpkg-deb: building package 'mapsembler2-dbgsym' in '../mapsembler2-dbgsym_2.2.4+dfsg-4_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../mapsembler2_2.2.4+dfsg-4_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2020-06-16T05:44:20Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
mapsembler2_2.2.4+dfsg-4_armhf.changes:
---------------------------------------
Format: 1.8
Date: Sat, 13 Jun 2020 05:43:14 +0530
Source: mapsembler2
Binary: mapsembler2 mapsembler2-dbgsym
Architecture: armhf
Version: 2.2.4+dfsg-4
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Pranav Ballaney <ballaneypranav@gmail.com>
Description:
mapsembler2 - bioinformatics targeted assembly software
Changes:
mapsembler2 (2.2.4+dfsg-4) unstable; urgency=medium
.
[ Steffen Möller ]
* Added ref to conda
.
[ Pranav Ballaney ]
* Add reference data for autopkgtests
* Add autopkgtests
* Install docs
.
[ Andreas Tille ]
* Standards-Version: 4.5.0 (routine-update)
* debhelper-compat 13 (routine-update)
* Add salsa-ci file (routine-update)
* Rules-Requires-Root: no (routine-update)
* Trim trailing whitespace.
* Refer to specific version of license GPL-2+.
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64e075bd29a67099a9068ad59c7ae4b8dd2a7cab 665776 mapsembler2_2.2.4+dfsg-4_armhf.deb
Checksums-Sha256:
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40a1dbb08e82759c2ddbbab90a1cbf428cde5fbb9f9ba40ebea3d36b7a9f3749 665776 mapsembler2_2.2.4+dfsg-4_armhf.deb
Files:
2772040d26ee5ee27ea41256238ee78b 2278500 debug optional mapsembler2-dbgsym_2.2.4+dfsg-4_armhf.deb
cd3d29ad934bcf9f115533be59e2e974 6378 science optional mapsembler2_2.2.4+dfsg-4_armhf.buildinfo
647fe1eadf43e97618097539c50690de 665776 science optional mapsembler2_2.2.4+dfsg-4_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
mapsembler2-dbgsym_2.2.4+dfsg-4_armhf.deb
-----------------------------------------
new Debian package, version 2.0.
size 2278500 bytes: control archive=760 bytes.
520 bytes, 12 lines control
515 bytes, 5 lines md5sums
Package: mapsembler2-dbgsym
Source: mapsembler2
Version: 2.2.4+dfsg-4
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 2406
Depends: mapsembler2 (= 2.2.4+dfsg-4)
Section: debug
Priority: optional
Description: debug symbols for mapsembler2
Build-Ids: 11639fd0fea11ed52c5648e1d5487e9df050c3a3 1b0aedc5bac0f6262b16104938efc7b28b0abfe5 39a2ed06ff3efad445b13354e2bcec6a759ae6fc aeba6d48ecd26a2acbcdb7a9e37404a5a01acd8e
drwxr-xr-x root/root 0 2020-06-13 00:13 ./
drwxr-xr-x root/root 0 2020-06-13 00:13 ./usr/
drwxr-xr-x root/root 0 2020-06-13 00:13 ./usr/lib/
drwxr-xr-x root/root 0 2020-06-13 00:13 ./usr/lib/debug/
drwxr-xr-x root/root 0 2020-06-13 00:13 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2020-06-13 00:13 ./usr/lib/debug/.build-id/11/
-rw-r--r-- root/root 1267084 2020-06-13 00:13 ./usr/lib/debug/.build-id/11/639fd0fea11ed52c5648e1d5487e9df050c3a3.debug
drwxr-xr-x root/root 0 2020-06-13 00:13 ./usr/lib/debug/.build-id/1b/
-rw-r--r-- root/root 680044 2020-06-13 00:13 ./usr/lib/debug/.build-id/1b/0aedc5bac0f6262b16104938efc7b28b0abfe5.debug
drwxr-xr-x root/root 0 2020-06-13 00:13 ./usr/lib/debug/.build-id/39/
-rw-r--r-- root/root 358980 2020-06-13 00:13 ./usr/lib/debug/.build-id/39/a2ed06ff3efad445b13354e2bcec6a759ae6fc.debug
drwxr-xr-x root/root 0 2020-06-13 00:13 ./usr/lib/debug/.build-id/ae/
-rw-r--r-- root/root 91520 2020-06-13 00:13 ./usr/lib/debug/.build-id/ae/ba6d48ecd26a2acbcdb7a9e37404a5a01acd8e.debug
drwxr-xr-x root/root 0 2020-06-13 00:13 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root 0 2020-06-13 00:13 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root 48128 2020-06-13 00:13 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/mapsembler2.debug
drwxr-xr-x root/root 0 2020-06-13 00:13 ./usr/share/
drwxr-xr-x root/root 0 2020-06-13 00:13 ./usr/share/doc/
lrwxrwxrwx root/root 0 2020-06-13 00:13 ./usr/share/doc/mapsembler2-dbgsym -> mapsembler2
mapsembler2_2.2.4+dfsg-4_armhf.deb
----------------------------------
new Debian package, version 2.0.
size 665776 bytes: control archive=1832 bytes.
1395 bytes, 27 lines control
2274 bytes, 28 lines md5sums
Package: mapsembler2
Version: 2.2.4+dfsg-4
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1066
Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.5), libgomp1 (>= 4.9), libstdc++6 (>= 5.2), zlib1g (>= 1:1.2.3.4), bc
Section: science
Priority: optional
Homepage: http://colibread.inria.fr/mapsembler2/
Description: bioinformatics targeted assembly software
Mapsembler2 is a targeted assembly software.
It takes as input a set of NGS raw reads (fasta or fastq, gzipped or not)
and a set of input sequences (starters).
.
It first determines if each starter is read-coherent, e.g. whether reads
confirm the presence of each starter in the original sequence.
Then for each read-coherent starter, Mapsembler2 outputs its sequence
neighborhood as a linear sequence or as a graph, depending on the user choice.
.
Mapsembler2 may be used for (not limited to):
- Validate an assembled sequence (input as starter), e.g. from a de
Bruijn graph assembly where read-coherence was not enforced.
- Checks if a gene (input as starter) has an homolog in a set of reads
- Checks if a known enzyme is present in a metagenomic NGS read set.
- Enrich unmappable reads by extending them, possibly making them mappable
- Checks what happens at the extremities of a contig
- Remove contaminants or symbiont reads from a read set
drwxr-xr-x root/root 0 2020-06-13 00:13 ./
drwxr-xr-x root/root 0 2020-06-13 00:13 ./usr/
drwxr-xr-x root/root 0 2020-06-13 00:13 ./usr/bin/
lrwxrwxrwx root/root 0 2020-06-13 00:13 ./usr/bin/mapsembler2_extend -> mapsembler_extend
-rwxr-xr-x root/root 235172 2020-06-13 00:13 ./usr/bin/mapsembler2_extremities
-rwxr-xr-x root/root 54880 2020-06-13 00:13 ./usr/bin/mapsembler2_kissreads
-rwxr-xr-x root/root 108188 2020-06-13 00:13 ./usr/bin/mapsembler2_kissreads_graph
-rwxr-xr-x root/root 145132 2020-06-13 00:13 ./usr/bin/mapsembler_extend
-rwxr-xr-x root/root 9585 2020-06-13 00:13 ./usr/bin/run_mapsembler2_pipeline
drwxr-xr-x root/root 0 2020-06-13 00:13 ./usr/share/
drwxr-xr-x root/root 0 2020-06-13 00:13 ./usr/share/doc/
drwxr-xr-x root/root 0 2020-06-13 00:13 ./usr/share/doc/mapsembler2/
-rw-r--r-- root/root 52 2014-09-11 15:10 ./usr/share/doc/mapsembler2/EXAMPLE.md
-rw-r--r-- root/root 218 2020-06-13 00:13 ./usr/share/doc/mapsembler2/README.Debian
-rw-r--r-- root/root 5260 2014-09-11 15:10 ./usr/share/doc/mapsembler2/README.md.gz
-rw-r--r-- root/root 268 2020-06-13 00:13 ./usr/share/doc/mapsembler2/README.source
-rw-r--r-- root/root 278 2020-06-13 00:13 ./usr/share/doc/mapsembler2/README.test
-rw-r--r-- root/root 174 2020-06-13 00:13 ./usr/share/doc/mapsembler2/README.test_data
-rw-r--r-- root/root 1471 2020-06-13 00:13 ./usr/share/doc/mapsembler2/changelog.Debian.gz
-rw-r--r-- root/root 3953 2020-06-13 00:13 ./usr/share/doc/mapsembler2/copyright
drwxr-xr-x root/root 0 2020-06-13 00:13 ./usr/share/doc/mapsembler2/examples/
-rw-r--r-- root/root 174 2020-06-13 00:13 ./usr/share/doc/mapsembler2/examples/README.test_data
-rw-r--r-- root/root 229216 2020-06-13 00:13 ./usr/share/doc/mapsembler2/examples/reads1.fa.gz
-rw-r--r-- root/root 229914 2020-06-13 00:13 ./usr/share/doc/mapsembler2/examples/reads2.fa.gz
-rw-r--r-- root/root 3853 2020-06-13 00:13 ./usr/share/doc/mapsembler2/examples/ref-mapsembler2_extremities.out.fa
-rw-r--r-- root/root 3537 2020-06-13 00:13 ./usr/share/doc/mapsembler2/examples/ref-reads1_coherent_k_31_c_5_t_1.fasta
-rw-r--r-- root/root 0 2020-06-13 00:13 ./usr/share/doc/mapsembler2/examples/ref-reads1_uncoherent_k_31_c_5_t_1.fasta
-rw-r--r-- root/root 25386 2020-06-13 00:13 ./usr/share/doc/mapsembler2/examples/ref-res_k_31_c_5_t_3_modified_and_covered.json
-rw-r--r-- root/root 78 2020-06-13 00:13 ./usr/share/doc/mapsembler2/examples/ref-res_mapsembler_k_31_c_2_t_1.fasta
-rw-r--r-- root/root 83 2014-08-11 09:29 ./usr/share/doc/mapsembler2/examples/starter.fa
-rw-r--r-- root/root 2382 2020-06-13 00:13 ./usr/share/doc/mapsembler2/run-unit-test
drwxr-xr-x root/root 0 2020-06-13 00:13 ./usr/share/man/
drwxr-xr-x root/root 0 2020-06-13 00:13 ./usr/share/man/man1/
lrwxrwxrwx root/root 0 2020-06-13 00:13 ./usr/share/man/man1/mapsembler2_extend.1.gz -> mapsembler_extend.1.gz
-rw-r--r-- root/root 742 2020-06-13 00:13 ./usr/share/man/man1/mapsembler2_extremities.1.gz
-rw-r--r-- root/root 1318 2020-06-13 00:13 ./usr/share/man/man1/mapsembler2_kissreads.1.gz
-rw-r--r-- root/root 878 2020-06-13 00:13 ./usr/share/man/man1/mapsembler2_kissreads_graph.1.gz
-rw-r--r-- root/root 1033 2020-06-13 00:13 ./usr/share/man/man1/mapsembler_extend.1.gz
-rw-r--r-- root/root 1022 2020-06-13 00:13 ./usr/share/man/man1/run_mapsembler2_pipeline.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 223864
Build-Time: 1882
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 542
Job: mapsembler2_2.2.4+dfsg-4
Machine Architecture: armhf
Package: mapsembler2
Package-Time: 2476
Source-Version: 2.2.4+dfsg-4
Space: 223864
Status: successful
Version: 2.2.4+dfsg-4
--------------------------------------------------------------------------------
Finished at 2020-06-16T05:44:20Z
Build needed 00:41:16, 223864k disc space