mapsembler2 →
2.2.4+dfsg-3+b1 →
armhf → 2018-12-19 12:39:09
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-01
+==============================================================================+
| mapsembler2 2.2.4+dfsg-3+b1 (armhf) Wed, 19 Dec 2018 12:23:44 +0000 |
+==============================================================================+
Package: mapsembler2
Version: 2.2.4+dfsg-3+b1
Source Version: 2.2.4+dfsg-3
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-61f12f85-58b0-4b75-b72d-6abc089fe1a4' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [11.3 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [13.0 MB]
Fetched 24.3 MB in 9s (2756 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'mapsembler2' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/mapsembler2.git
Please use:
git clone https://salsa.debian.org/med-team/mapsembler2.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 1404 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main mapsembler2 2.2.4+dfsg-3 (dsc) [2268 B]
Get:2 http://172.17.0.1/private buster-staging/main mapsembler2 2.2.4+dfsg-3 (tar) [1389 kB]
Get:3 http://172.17.0.1/private buster-staging/main mapsembler2 2.2.4+dfsg-3 (diff) [12.5 kB]
Fetched 1404 kB in 0s (6348 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/mapsembler2-mBTie7/mapsembler2-2.2.4+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/mapsembler2-mBTie7' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-vgoCB3/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-vgoCB3/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-vgoCB3/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-vgoCB3/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-vgoCB3/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-vgoCB3/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-vgoCB3/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-vgoCB3/apt_archive ./ Packages [433 B]
Fetched 2109 B in 0s (11.0 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates dbus dbus-user-session e2fsprogs-l10n krb5-locales libexpat1
libgpg-error-l10n libnss-systemd libpam-systemd libssl1.1 openssl
systemd-sysv
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 17 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-vgoCB3/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 15795 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in amd64 arm64 armel armhf hurd-i386 i386 kfreebsd-amd64 kfreebsd-i386 ppc64el s390x)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 11~), cmake, bc, zlib1g-dev, libhdf5-dev, libcppunit-dev, libboost-dev
Filtered Build-Depends: debhelper (>= 11~), cmake, bc, zlib1g-dev, libhdf5-dev, libcppunit-dev, libboost-dev
dpkg-deb: building package 'sbuild-build-depends-mapsembler2-dummy' in '/<<BUILDDIR>>/resolver-vgoCB3/apt_archive/sbuild-build-depends-mapsembler2-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-mapsembler2-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-vgoCB3/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-vgoCB3/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-vgoCB3/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-vgoCB3/apt_archive ./ Sources [529 B]
Get:5 copy:/<<BUILDDIR>>/resolver-vgoCB3/apt_archive ./ Packages [609 B]
Fetched 2471 B in 0s (12.9 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install mapsembler2 build dependencies (apt-based resolver)
-----------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates dbus dbus-user-session e2fsprogs-l10n krb5-locales
libgpg-error-l10n libnss-systemd libpam-systemd openssl systemd-sysv
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bc bsdmainutils cmake cmake-data
cpp-8 debhelper dh-autoreconf dh-strip-nondeterminism dwz file g++-8 gcc-8
gcc-8-base gettext gettext-base groff-base hdf5-helpers intltool-debian
libaec-dev libaec0 libarchive-zip-perl libarchive13 libasan5 libatomic1
libboost-dev libboost1.67-dev libbsd0 libcc1-0 libcppunit-1.14-0
libcppunit-dev libcroco3 libcurl4 libelf1 libfile-stripnondeterminism-perl
libgcc-8-dev libgcc1 libgfortran5 libglib2.0-0 libgomp1 libhdf5-103
libhdf5-cpp-103 libhdf5-dev libicu63 libjpeg-dev libjpeg62-turbo
libjpeg62-turbo-dev libjsoncpp1 libmagic-mgc libmagic1 libnghttp2-14
libpipeline1 libpsl5 librhash0 librtmp1 libsigsegv2 libssh2-1
libstdc++-8-dev libstdc++6 libsz2 libtool libubsan1 libuv1 libxml2 m4 man-db
po-debconf zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation cmake-doc ninja-build gcc-8-locales dh-make gcc-8-doc
libstdc++6-8-dbg libgcc1-dbg libgomp1-dbg libitm1-dbg libatomic1-dbg
libasan5-dbg liblsan0-dbg libtsan0-dbg libubsan1-dbg libmpx2-dbg
libquadmath0-dbg gettext-doc libasprintf-dev libgettextpo-dev groff lrzip
libboost-doc libboost1.67-doc libboost-atomic1.67-dev
libboost-chrono1.67-dev libboost-container1.67-dev libboost-context1.67-dev
libboost-coroutine1.67-dev libboost-date-time1.67-dev
libboost-exception1.67-dev libboost-fiber1.67-dev
libboost-filesystem1.67-dev libboost-graph1.67-dev
libboost-graph-parallel1.67-dev libboost-iostreams1.67-dev
libboost-locale1.67-dev libboost-log1.67-dev libboost-math1.67-dev
libboost-mpi1.67-dev libboost-mpi-python1.67-dev libboost-numpy1.67-dev
libboost-program-options1.67-dev libboost-python1.67-dev
libboost-random1.67-dev libboost-regex1.67-dev
libboost-serialization1.67-dev libboost-signals1.67-dev
libboost-stacktrace1.67-dev libboost-system1.67-dev libboost-test1.67-dev
libboost-thread1.67-dev libboost-timer1.67-dev libboost-type-erasure1.67-dev
libboost-wave1.67-dev libboost1.67-tools-dev libmpfrc++-dev libntl-dev
libcppunit-doc libhdf5-doc libstdc++-8-doc libtool-doc gfortran
| fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
libmail-box-perl
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs publicsuffix libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bc bsdmainutils cmake cmake-data
debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext
gettext-base groff-base hdf5-helpers intltool-debian libaec-dev libaec0
libarchive-zip-perl libarchive13 libboost-dev libboost1.67-dev libbsd0
libcppunit-1.14-0 libcppunit-dev libcroco3 libcurl4 libelf1
libfile-stripnondeterminism-perl libgfortran5 libglib2.0-0 libhdf5-103
libhdf5-cpp-103 libhdf5-dev libicu63 libjpeg-dev libjpeg62-turbo
libjpeg62-turbo-dev libjsoncpp1 libmagic-mgc libmagic1 libnghttp2-14
libpipeline1 libpsl5 librhash0 librtmp1 libsigsegv2 libssh2-1 libsz2 libtool
libuv1 libxml2 m4 man-db po-debconf sbuild-build-depends-mapsembler2-dummy
zlib1g-dev
The following packages will be upgraded:
cpp-8 g++-8 gcc-8 gcc-8-base libasan5 libatomic1 libcc1-0 libgcc-8-dev
libgcc1 libgomp1 libstdc++-8-dev libstdc++6 libubsan1
13 upgraded, 59 newly installed, 0 to remove and 4 not upgraded.
Need to get 59.5 MB/60.0 MB of archives.
After this operation, 255 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-vgoCB3/apt_archive ./ sbuild-build-depends-mapsembler2-dummy 0.invalid.0 [892 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.9.1-1 [104 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf libcc1-0 armhf 8.2.0-12+rpi1 [30.1 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf gcc-8-base armhf 8.2.0-12+rpi1 [188 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf libgcc1 armhf 1:8.2.0-12+rpi1 [36.6 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf libgomp1 armhf 8.2.0-12+rpi1 [63.9 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf libatomic1 armhf 8.2.0-12+rpi1 [8108 B]
Get:9 http://172.17.0.1/private buster-staging/main armhf libasan5 armhf 8.2.0-12+rpi1 [318 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf libubsan1 armhf 8.2.0-12+rpi1 [104 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf g++-8 armhf 8.2.0-12+rpi1 [5942 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf libstdc++-8-dev armhf 8.2.0-12+rpi1 [1565 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf libgcc-8-dev armhf 8.2.0-12+rpi1 [3743 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf gcc-8 armhf 8.2.0-12+rpi1 [5848 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf cpp-8 armhf 8.2.0-12+rpi1 [5475 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf libstdc++6 armhf 8.2.0-12+rpi1 [326 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-10 [1005 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.5.0-2 [25.1 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.8.4-3 [1160 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf bc armhf 1.07.1-2 [101 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.34-2 [239 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf libmagic1 armhf 1:5.34-2 [107 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.34-2 [65.0 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-9 [117 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-2 [185 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-9 [434 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf cmake-data all 3.13.2-1 [1476 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf libicu63 armhf 63.1-5 [7976 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-7+b1 [570 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf libarchive13 armhf 3.3.3-1 [269 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf libnghttp2-14 armhf 1.35.1-1 [70.8 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf libpsl5 armhf 0.20.2-2 [52.6 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2 [54.0 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf libssh2-1 armhf 1.8.0-2 [125 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf libcurl4 armhf 7.62.0-1 [286 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf librhash0 armhf 1.3.6-3 [97.1 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf libuv1 armhf 1.24.0-1 [96.3 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf cmake armhf 3.13.2-1 [2563 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-6 [547 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 1.0.0-1 [19.5 kB]
Get:47 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 1.0.0-1 [12.5 kB]
Get:48 http://172.17.0.1/private buster-staging/main armhf libelf1 armhf 0.170-0.5 [160 kB]
Get:49 http://172.17.0.1/private buster-staging/main armhf dwz armhf 0.12-3 [66.0 kB]
Get:50 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.58.1-2 [1051 kB]
Get:51 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-9 [1219 kB]
Get:52 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:53 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:54 http://172.17.0.1/private buster-staging/main armhf debhelper all 11.5.4 [1003 kB]
Get:55 http://172.17.0.1/private buster-staging/main armhf hdf5-helpers armhf 1.10.4+repack-1 [33.0 kB]
Get:56 http://172.17.0.1/private buster-staging/main armhf libaec-dev armhf 1.0.2-1 [19.1 kB]
Get:57 http://172.17.0.1/private buster-staging/main armhf libboost1.67-dev armhf 1.67.0-11 [8386 kB]
Get:58 http://172.17.0.1/private buster-staging/main armhf libboost-dev armhf 1.67.0.1+b1 [4140 B]
Get:59 http://172.17.0.1/private buster-staging/main armhf libcppunit-1.14-0 armhf 1.14.0-3 [129 kB]
Get:60 http://172.17.0.1/private buster-staging/main armhf libcppunit-dev armhf 1.14.0-3 [188 kB]
Get:61 http://172.17.0.1/private buster-staging/main armhf libgfortran5 armhf 8.2.0-12+rpi1 [205 kB]
Get:62 http://172.17.0.1/private buster-staging/main armhf libhdf5-103 armhf 1.10.4+repack-1 [1258 kB]
Get:63 http://172.17.0.1/private buster-staging/main armhf libhdf5-cpp-103 armhf 1.10.4+repack-1 [118 kB]
Get:64 http://172.17.0.1/private buster-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [206 kB]
Get:65 http://172.17.0.1/private buster-staging/main armhf libhdf5-dev armhf 1.10.4+repack-1 [2220 kB]
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Processing triggers for libc-bin (2.28-2) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.4.0-124-generic armhf (armv8l)
Toolchain package versions: binutils_2.31.1-10+rpi1 dpkg-dev_1.19.2 g++-8_8.2.0-12+rpi1 gcc-8_8.2.0-12+rpi1 libc6-dev_2.28-2 libstdc++-8-dev_8.2.0-12+rpi1 libstdc++6_8.2.0-12+rpi1 linux-libc-dev_4.18.20-2+rpi1
Package versions: adduser_3.118 apt_1.8.0~alpha2 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1+rpi1 base-passwd_3.5.45 bash_4.4.18-3.1 bc_1.07.1-2 binutils_2.31.1-10+rpi1 binutils-arm-linux-gnueabihf_2.31.1-10+rpi1 binutils-common_2.31.1-10+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.33-0.2 build-essential_12.5 bzip2_1.0.6-9 ca-certificates_20170717 cmake_3.13.2-1 cmake-data_3.13.2-1 coreutils_8.30-1 cpio_2.12+dfsg-6 cpp_4:8.2.0-2+rpi1 cpp-8_8.2.0-12+rpi1 dash_0.5.10.2-2 dbus_1.12.12-1 dbus-user-session_1.12.12-1 debconf_1.5.69 debhelper_11.5.4 debianutils_4.8.6 dh-autoreconf_19 dh-strip-nondeterminism_1.0.0-1 diffutils_1:3.6-1 dirmngr_2.2.11-1 dmsetup_2:1.02.145-4.1+b5 dpkg_1.19.2 dpkg-dev_1.19.2 dwz_0.12-3 e2fslibs_1.44.4-2 e2fsprogs_1.44.4-2 e2fsprogs-l10n_1.44.4-2 fakeroot_1.23-1 fdisk_2.33-0.2 file_1:5.34-2 findutils_4.6.0+git+20181018-1 g++_4:8.2.0-2+rpi1 g++-8_8.2.0-12+rpi1 gcc_4:8.2.0-2+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.4-2+rpi1+b19 gcc-5-base_5.5.0-8 gcc-8_8.2.0-12+rpi1 gcc-8-base_8.2.0-12+rpi1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gnupg_2.2.11-1 gnupg-agent_2.2.11-1 gnupg-l10n_2.2.11-1 gnupg-utils_2.2.11-1 gpg_2.2.11-1 gpg-agent_2.2.11-1 gpg-wks-client_2.2.11-1 gpg-wks-server_2.2.11-1 gpgconf_2.2.11-1 gpgsm_2.2.11-1 gpgv_2.2.11-1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.9-2.1 hdf5-helpers_1.10.4+repack-1 hostname_3.21 inetutils-ping_2:1.9.4-5 init-system-helpers_1.56 initramfs-tools_0.132 initramfs-tools-core_0.132 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-14+rpi1 kmod_25-2 krb5-locales_1.16.1-1 libacl1_2.2.52-3 libaec-dev_1.0.2-1 libaec0_1.0.2-1 libapparmor1_2.13.1-3+b1 libapt-pkg5.0_1.8.0~alpha2 libarchive-zip-perl_1.64-1 libarchive13_3.3.3-1 libargon2-1_0~20171227-0.1 libasan5_8.2.0-12+rpi1 libassuan0_2.5.1-2 libatomic1_8.2.0-12+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.8.4-2 libaudit1_1:2.8.4-2 libbinutils_2.31.1-10+rpi1 libblkid1_2.33-0.2 libboost-dev_1.67.0.1+b1 libboost1.67-dev_1.67.0-11 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-9 libc-bin_2.28-2 libc-dev-bin_2.28-2 libc6_2.28-2 libc6-dev_2.28-2 libcap-ng0_0.7.9-1 libcap2_1:2.25-1.2 libcc1-0_8.2.0-12+rpi1 libcom-err2_1.44.4-2 libcppunit-1.14-0_1.14.0-3 libcppunit-dev_1.14.0-3 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.6-1 libcryptsetup4_2:1.7.5-1 libcurl4_7.62.0-1 libdb5.3_5.3.28+dfsg1-0.2 libdbus-1-3_1.12.12-1 libdebconfclient0_0.245 libdevmapper1.02.1_2:1.02.145-4.1+b5 libdpkg-perl_1.19.2 libdrm-common_2.4.95-1+rpi1 libdrm2_2.4.95-1+rpi1 libelf1_0.170-0.5 libexpat1_2.2.6-1 libext2fs2_1.44.4-2 libfakeroot_1.23-1 libfdisk1_2.33-0.2 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.0.0-1 libgcc-8-dev_8.2.0-12+rpi1 libgcc1_1:8.2.0-12+rpi1 libgcrypt20_1.8.4-4 libgdbm-compat4_1.18.1-2 libgdbm3_1.8.3-14 libgdbm6_1.18.1-2 libgfortran5_8.2.0-12+rpi1 libglib2.0-0_2.58.1-2 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.5.19-1+b1 libgomp1_8.2.0-12+rpi1 libgpg-error-l10n_1.32-3 libgpg-error0_1.32-3 libgssapi-krb5-2_1.16.1-1 libhdf5-103_1.10.4+repack-1 libhdf5-cpp-103_1.10.4+repack-1 libhdf5-dev_1.10.4+repack-1 libhogweed4_3.4.1~rc1-1 libicu63_63.1-5 libidn11_1.33-2.2 libidn2-0_2.0.5-1 libip4tc0_1.8.2-2+b1 libisl19_0.20-2 libjpeg-dev_1:1.5.2-2 libjpeg62-turbo_1:1.5.2-2+b1 libjpeg62-turbo-dev_1:1.5.2-2+b1 libjson-c3_0.12.1-1.3 libjsoncpp1_1.7.4-3 libk5crypto3_1.16.1-1 libkeyutils1_1.5.9-9.3 libklibc_2.0.4-14+rpi1 libkmod2_25-2 libkrb5-3_1.16.1-1 libkrb5support0_1.16.1-1 libksba8_1.3.5-2 libldap-2.4-2_2.4.46+dfsg-5+rpi1+b1 libldap-common_2.4.46+dfsg-5+rpi1 liblz4-1_1.8.2-1+rpi1 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.34-2 libmagic1_1:5.34-2 libmount1_2.33-0.2 libmpc3_1.1.0-1 libmpfr6_4.0.1-2 libncurses5_6.1+20181013-1 libncurses6_6.1+20181013-1 libncursesw5_6.1+20181013-1 libncursesw6_6.1+20181013-1 libnettle6_3.4.1~rc1-1 libnghttp2-14_1.35.1-1 libnpth0_1.6-1 libnss-systemd_239-15+rpi1 libp11-kit0_0.23.14-2 libpam-modules_1.1.8-3.8 libpam-modules-bin_1.1.8-3.8 libpam-runtime_1.1.8-3.8 libpam-systemd_239-15+rpi1 libpam0g_1.1.8-3.8 libpcre3_2:8.39-11+rpi1 libperl5.24_5.24.1-7 libperl5.28_5.28.1-3 libpipeline1_1.5.0-2 libplymouth4_0.9.4-1 libpng16-16_1.6.34-2+rpi1 libprocps7_2:3.3.15-2 libpsl5_0.20.2-2 libreadline7_7.0-5 librhash0_1.3.6-3 librtmp1_2.4+20151223.gitfa8646d.1-2 libsasl2-2_2.1.27~rc8-1 libsasl2-modules-db_2.1.27~rc8-1 libseccomp2_2.3.3-3 libselinux1_2.8-1 libsemanage-common_2.8-1 libsemanage1_2.8-1 libsepol1_2.8-1 libsigsegv2_2.12-2 libsmartcols1_2.33-0.2 libsqlite3-0_3.26.0-3 libss2_1.44.4-2 libssh2-1_1.8.0-2 libssl1.1_1.1.1a-1 libstdc++-8-dev_8.2.0-12+rpi1 libstdc++6_8.2.0-12+rpi1 libsystemd0_239-15+rpi1 libsz2_1.0.2-1 libtasn1-6_4.13-3 libtinfo5_6.1+20181013-1 libtinfo6_6.1+20181013-1 libtool_2.4.6-6 libubsan1_8.2.0-12+rpi1 libudev1_239-15+rpi1 libunistring2_0.9.10-1 libustr-1.0-1_1.0.4-6 libuuid1_2.33-0.2 libuv1_1.24.0-1 libxml2_2.9.4+dfsg1-7+b1 libzstd1_1.3.5+dfsg-1+rpi1 linux-base_4.5 linux-libc-dev_4.18.20-2+rpi1 login_1:4.5-1.1 lsb-base_10.2018112800+rpi1 m4_1.4.18-2 make_4.2.1-1.2 makedev_2.3.1-94 man-db_2.8.4-3 mawk_1.3.3-17 mount_2.33-0.2 multiarch-support_2.28-2 nano_3.2-1 ncurses-base_6.1+20181013-1 ncurses-bin_6.1+20181013-1 netbase_5.5 openssl_1.1.1a-1 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.28.1-3 perl-base_5.28.1-3 perl-modules-5.24_5.24.1-7 perl-modules-5.28_5.28.1-3 pinentry-curses_1.1.0-1 plymouth_0.9.4-1 po-debconf_1.0.21 procps_2:3.3.15-2 raspbian-archive-keyring_20120528.2 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-mapsembler2-dummy_0.invalid.0 sed_4.5-2 sensible-utils_0.0.12 systemd_239-15+rpi1 systemd-sysv_239-15+rpi1 sysvinit-utils_2.93-1 tar_1.30+dfsg-3+rpi1 tzdata_2018g-1 udev_239-15+rpi1 util-linux_2.33-0.2 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Sat Nov 3 06:23:45 2018 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./mapsembler2_2.2.4+dfsg-3.dsc
dpkg-source: info: extracting mapsembler2 in /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg
dpkg-source: info: unpacking mapsembler2_2.2.4+dfsg.orig.tar.xz
dpkg-source: info: unpacking mapsembler2_2.2.4+dfsg-3.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying use_debian_libs
dpkg-source: info: applying run_pipeline
dpkg-source: info: applying add_hardening
dpkg-source: info: applying skip_mphe
dpkg-source: info: applying gcc-5.patch
dpkg-source: info: applying libgomp.patch
dpkg-source: info: applying spelling.patch
Check disk space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 2.2.4+dfsg-3+b1
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-61f12f85-58b0-4b75-b72d-6abc089fe1a4
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package mapsembler2
dpkg-buildpackage: info: source version 2.2.4+dfsg-3+b1
dpkg-buildpackage: info: source distribution buster-staging
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean
debian/rules override_dh_clean
make[1]: Entering directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg'
rm -rf mapsembler2_extremities/build
cd mapsembler2_extend && make clean
make[2]: Entering directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extend'
rm -rf *.o ../minia/*.o read_coherence_mapsembler/*.o
make[2]: Leaving directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extend'
rm -f mapsembler2_extend/mapsembler_extend
cd kissreads_graph && make clean
make[2]: Entering directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/kissreads_graph'
rm -rf kissreads_graph *.o read_coherence_mapsembler/*.o ../minia/*.o
make[2]: Leaving directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/kissreads_graph'
rm -f kissreads_graph/mapsembler2_kissreads_graph
cd kissreads && make clean
make[2]: Entering directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/kissreads'
rm -rf ./src/*.o kissreads
make[2]: Leaving directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/kissreads'
rm -f kissreads/mapsembler2_kissreads
dh_clean
make[1]: Leaving directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg'
debian/rules build-arch
dh build-arch
dh_update_autotools_config -a
dh_autoreconf -a
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg'
mkdir mapsembler2_extremities/build
cd mapsembler2_extremities/build && cmake .. && make
-- The C compiler identification is GNU 8.2.0
-- The CXX compiler identification is GNU 8.2.0
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Performing Test SHARED_PTR_USE_TR1_MEMORY
-- Performing Test SHARED_PTR_USE_TR1_MEMORY - Success
-- Performing Test SHARED_PTR_USE_MEMORY
-- Performing Test SHARED_PTR_USE_MEMORY - Success
-- Performing Test UNORDERED_MAP_USE_TR1_UNORDERED_MAP
-- Performing Test UNORDERED_MAP_USE_TR1_UNORDERED_MAP - Success
-- Performing Test UNORDERED_MAP_USE_UNORDERED_MAP
-- Performing Test UNORDERED_MAP_USE_UNORDERED_MAP - Success
-- gatb-core is here '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core'
-- CppUnit: found headers (in /usr/include) but not the library...
-- CppUnit NOT FOUND
-- Found Perl: /usr/bin/perl (found version "5.28.1")
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of __uint128
-- Check size of __uint128 - failed
CMake Warning (dev) at thirdparty/gatb-core/cmake/DefineInteger.cmake:11 (if):
Policy CMP0054 is not set: Only interpret if() arguments as variables or
keywords when unquoted. Run "cmake --help-policy CMP0054" for policy
details. Use the cmake_policy command to set the policy and suppress this
warning.
Quoted variables like "HAVE_int128_t_USE__uint128" will no longer be
dereferenced when the policy is set to NEW. Since the policy is not set
the OLD behavior will be used.
Call Stack (most recent call first):
thirdparty/gatb-core/cmake/DefineInteger.cmake:33 (Check_Int128)
thirdparty/gatb-core/CMakeLists.txt:39 (DefineInteger)
This warning is for project developers. Use -Wno-dev to suppress it.
-- Check size of __uint128_t
-- Check size of __uint128_t - failed
-------------------------------------------------------------------------------------
-- C++ EXTENSIONS WILL BE USED...
-------------------------------------------------------------------------------------
-- Options: -O3 -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof
-- SUPPORTED KMER SIZES ARE 32 64 96 128
-- ---------- GATB TOOLS ----------
-- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE)
-- ---------- GATB EXAMPLES ----------
-- Add compilation option -DUNORDERED_MAP_TR1_FOUND=1
-- Configuring done
CMake Warning (dev) at thirdparty/gatb-core/CMakeLists.txt:221 (ADD_DEPENDENCIES):
Policy CMP0046 is not set: Error on non-existent dependency in
add_dependencies. Run "cmake --help-policy CMP0046" for policy details.
Use the cmake_policy command to set the policy and suppress this warning.
The dependency target "hdf5" of target "gatbcore-static" does not exist.
This warning is for project developers. Use -Wno-dev to suppress it.
-- Generating done
-- Build files have been written to: /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build
make[2]: Entering directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build'
make[3]: Entering directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build'
make[4]: Entering directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build'
Scanning dependencies of target gatbcore-static
make[4]: Leaving directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build'
make[4]: Entering directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build'
[ 0%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o
[ 3%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/System.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/api/Data.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/Sequence.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/IBank.hpp:33,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/AbstractBank.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankBinary.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankBinary.cpp:20:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp: In constructor 'gatb::core::system::ExceptionErrno::ExceptionErrno(const char*, ...)':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:24: warning: ignoring return value of 'char* strerror_r(int, char*, size_t)', declared with attribute warn_unused_result [-Wunused-result]
strerror_r (errno, buffer, BUFSIZ);
~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
[ 3%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.hpp:33,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.cpp:20:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile<Item>::fill(std::vector<Item>&, size_t)':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type]
}
^
[ 7%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/System.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/api/Data.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/Sequence.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/IBank.hpp:33,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/AbstractBank.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankFasta.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankFasta.cpp:20:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp: In constructor 'gatb::core::system::ExceptionErrno::ExceptionErrno(const char*, ...)':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:24: warning: ignoring return value of 'char* strerror_r(int, char*, size_t)', declared with attribute warn_unused_result [-Wunused-result]
strerror_r (errno, buffer, BUFSIZ);
~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
[ 7%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o
[ 10%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o
[ 10%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRegistery.cpp.o
[ 14%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o
[ 14%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile<Item>::fill(std::vector<Item>&, size_t)':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type]
}
^
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<128>::Count]':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
vasprintf (&buffer, fmt, args);
~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<96>::Count]':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<64>::Count]':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<32>::Count]':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<128>::Count*, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> > >; _Distance = int; _Tp = gatb::core::kmer::impl::Kmer<128>::Count; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<128>::Count*, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> > >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<128>::Count*, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<128>::Count*, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> > >' changed in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<128>::Count*, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<128>::Count*, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> > >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<128>::Count*, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> > >' changed in GCC 7.1
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<96>::Count*, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> > >; _Distance = int; _Tp = gatb::core::kmer::impl::Kmer<96>::Count; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<96>::Count*, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> > >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<96>::Count*, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<96>::Count*, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> > >' changed in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<96>::Count*, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<96>::Count*, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> > >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<96>::Count*, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<64>::Count*, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<64>::Count*, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> > >' changed in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<64>::Count*, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<64>::Count*, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> > >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<64>::Count*, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> > >' changed in GCC 7.1
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<64>::Count*, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> > >; _Distance = int; _Tp = gatb::core::kmer::impl::Kmer<64>::Count; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<64>::Count*, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> > >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:34,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gatb::core::kmer::impl::Kmer<32>::Count}; _Tp = gatb::core::kmer::impl::Kmer<32>::Count; _Alloc = std::allocator<gatb::core::kmer::impl::Kmer<32>::Count>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<32>::Count*, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> > >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<32>::Count*, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> > >; _Tp = gatb::core::kmer::impl::Kmer<32>::Count; _Alloc = std::allocator<gatb::core::kmer::impl::Kmer<32>::Count>]':
/usr/include/c++/8/bits/vector.tcc:672:7: note: parameter passing for argument of type 'std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<32>::Count*, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> > >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc:672:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<32>::Count*, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> > >' changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc:672:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<32>::Count*, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> > >' changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gatb::core::kmer::impl::Kmer<64>::Count}; _Tp = gatb::core::kmer::impl::Kmer<64>::Count; _Alloc = std::allocator<gatb::core::kmer::impl::Kmer<64>::Count>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<64>::Count*, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> > >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gatb::core::kmer::impl::Kmer<96>::Count}; _Tp = gatb::core::kmer::impl::Kmer<96>::Count; _Alloc = std::allocator<gatb::core::kmer::impl::Kmer<96>::Count>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<96>::Count*, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> > >'} changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gatb::core::kmer::impl::Kmer<128>::Count}; _Tp = gatb::core::kmer::impl::Kmer<128>::Count; _Alloc = std::allocator<gatb::core::kmer::impl::Kmer<128>::Count>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<128>::Count*, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> > >'} changed in GCC 7.1
In file included from /usr/include/c++/8/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<32>::Count*, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<32>::Count*, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> > >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<32>::Count*, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> > >' changed in GCC 7.1
In file included from /usr/include/c++/8/set:60,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:30,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/usr/include/c++/8/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<long long int&&>, std::tuple<>}; _Key = long long int; _Val = std::pair<const long long int, long long unsigned int*>; _KeyOfValue = std::_Select1st<std::pair<const long long int, long long unsigned int*> >; _Compare = std::less<long long int>; _Alloc = std::allocator<std::pair<const long long int, long long unsigned int*> >]':
/usr/include/c++/8/bits/stl_tree.h:2411:7: note: parameter passing for argument of type 'std::_Rb_tree<long long int, std::pair<const long long int, long long unsigned int*>, std::_Select1st<std::pair<const long long int, long long unsigned int*> >, std::less<long long int>, std::allocator<std::pair<const long long int, long long unsigned int*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long int, long long unsigned int*> >'} changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/map:61,
from /usr/include/boost/detail/container_fwd.hpp:94,
from /usr/include/boost/container_hash/extensions.hpp:22,
from /usr/include/boost/container_hash/hash.hpp:760,
from /usr/include/boost/type_index/stl_type_index.hpp:43,
from /usr/include/boost/type_index.hpp:29,
from /usr/include/boost/variant/variant.hpp:21,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/usr/include/c++/8/bits/stl_map.h: In member function 'T& gatb::core::system::impl::ThreadObject<T>::operator()() [with T = long long unsigned int]':
/usr/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<long long int, std::pair<const long long int, long long unsigned int*>, std::_Select1st<std::pair<const long long int, long long unsigned int*> >, std::less<long long int>, std::allocator<std::pair<const long long int, long long unsigned int*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long int, long long unsigned int*> >'} changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<long long int, std::pair<const long long int, long long unsigned int*>, std::_Select1st<std::pair<const long long int, long long unsigned int*> >, std::less<long long int>, std::allocator<std::pair<const long long int, long long unsigned int*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long int, long long unsigned int*> >'} changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/8/set:60,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:30,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/usr/include/c++/8/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<long long int&&>, std::tuple<>}; _Key = long long int; _Val = std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> >*>; _KeyOfValue = std::_Select1st<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> >*> >; _Compare = std::less<long long int>; _Alloc = std::allocator<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> >*> >]':
/usr/include/c++/8/bits/stl_tree.h:2411:7: note: parameter passing for argument of type 'std::_Rb_tree<long long int, std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> >*>, std::_Select1st<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> >*> >, std::less<long long int>, std::allocator<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> >*> >'} changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/map:61,
from /usr/include/boost/detail/container_fwd.hpp:94,
from /usr/include/boost/container_hash/extensions.hpp:22,
from /usr/include/boost/container_hash/hash.hpp:760,
from /usr/include/boost/type_index/stl_type_index.hpp:43,
from /usr/include/boost/type_index.hpp:29,
from /usr/include/boost/variant/variant.hpp:21,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/usr/include/c++/8/bits/stl_map.h: In member function 'T& gatb::core::system::impl::ThreadObject<T>::operator()() [with T = std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> >]':
/usr/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<long long int, std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> >*>, std::_Select1st<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> >*> >, std::less<long long int>, std::allocator<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> >*> >'} changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<long long int, std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> >*>, std::_Select1st<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> >*> >, std::less<long long int>, std::allocator<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> >*> >'} changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/8/set:60,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:30,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/usr/include/c++/8/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<long long int&&>, std::tuple<>}; _Key = long long int; _Val = std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> >*>; _KeyOfValue = std::_Select1st<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> >*> >; _Compare = std::less<long long int>; _Alloc = std::allocator<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> >*> >]':
/usr/include/c++/8/bits/stl_tree.h:2411:7: note: parameter passing for argument of type 'std::_Rb_tree<long long int, std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> >*>, std::_Select1st<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> >*> >, std::less<long long int>, std::allocator<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> >*> >'} changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/map:61,
from /usr/include/boost/detail/container_fwd.hpp:94,
from /usr/include/boost/container_hash/extensions.hpp:22,
from /usr/include/boost/container_hash/hash.hpp:760,
from /usr/include/boost/type_index/stl_type_index.hpp:43,
from /usr/include/boost/type_index.hpp:29,
from /usr/include/boost/variant/variant.hpp:21,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/usr/include/c++/8/bits/stl_map.h: In member function 'T& gatb::core::system::impl::ThreadObject<T>::operator()() [with T = std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> >]':
/usr/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<long long int, std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> >*>, std::_Select1st<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> >*> >, std::less<long long int>, std::allocator<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> >*> >'} changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<long long int, std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> >*>, std::_Select1st<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> >*> >, std::less<long long int>, std::allocator<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> >*> >'} changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/8/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<64>::Count*, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<64>::Count*, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> > >' changed in GCC 7.1
__heap_select(_RandomAccessIterator __first,
^~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<64>::Count*, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<64>::Count*, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> > >' changed in GCC 7.1
In file included from /usr/include/c++/8/set:60,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:30,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/usr/include/c++/8/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<long long int&&>, std::tuple<>}; _Key = long long int; _Val = std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> >*>; _KeyOfValue = std::_Select1st<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> >*> >; _Compare = std::less<long long int>; _Alloc = std::allocator<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> >*> >]':
/usr/include/c++/8/bits/stl_tree.h:2411:7: note: parameter passing for argument of type 'std::_Rb_tree<long long int, std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> >*>, std::_Select1st<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> >*> >, std::less<long long int>, std::allocator<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> >*> >'} changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/map:61,
from /usr/include/boost/detail/container_fwd.hpp:94,
from /usr/include/boost/container_hash/extensions.hpp:22,
from /usr/include/boost/container_hash/hash.hpp:760,
from /usr/include/boost/type_index/stl_type_index.hpp:43,
from /usr/include/boost/type_index.hpp:29,
from /usr/include/boost/variant/variant.hpp:21,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/usr/include/c++/8/bits/stl_map.h: In member function 'T& gatb::core::system::impl::ThreadObject<T>::operator()() [with T = std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> >]':
/usr/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<long long int, std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> >*>, std::_Select1st<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> >*> >, std::less<long long int>, std::allocator<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> >*> >'} changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<long long int, std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> >*>, std::_Select1st<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> >*> >, std::less<long long int>, std::allocator<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> >*> >'} changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/8/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<96>::Count*, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<96>::Count*, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> > >' changed in GCC 7.1
__heap_select(_RandomAccessIterator __first,
^~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<96>::Count*, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<96>::Count*, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> > >' changed in GCC 7.1
In file included from /usr/include/c++/8/set:60,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:30,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/usr/include/c++/8/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<long long int&&>, std::tuple<>}; _Key = long long int; _Val = std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> >*>; _KeyOfValue = std::_Select1st<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> >*> >; _Compare = std::less<long long int>; _Alloc = std::allocator<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> >*> >]':
/usr/include/c++/8/bits/stl_tree.h:2411:7: note: parameter passing for argument of type 'std::_Rb_tree<long long int, std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> >*>, std::_Select1st<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> >*> >, std::less<long long int>, std::allocator<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> >*> >'} changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/map:61,
from /usr/include/boost/detail/container_fwd.hpp:94,
from /usr/include/boost/container_hash/extensions.hpp:22,
from /usr/include/boost/container_hash/hash.hpp:760,
from /usr/include/boost/type_index/stl_type_index.hpp:43,
from /usr/include/boost/type_index.hpp:29,
from /usr/include/boost/variant/variant.hpp:21,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/usr/include/c++/8/bits/stl_map.h: In member function 'T& gatb::core::system::impl::ThreadObject<T>::operator()() [with T = std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> >]':
/usr/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<long long int, std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> >*>, std::_Select1st<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> >*> >, std::less<long long int>, std::allocator<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> >*> >'} changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<long long int, std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> >*>, std::_Select1st<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> >*> >, std::less<long long int>, std::allocator<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long int, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> >*> >'} changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/8/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<128>::Count*, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<128>::Count*, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> > >' changed in GCC 7.1
__heap_select(_RandomAccessIterator __first,
^~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<128>::Count*, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<128>::Count*, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> > >' changed in GCC 7.1
In file included from /usr/include/c++/8/bits/char_traits.h:39,
from /usr/include/c++/8/string:40,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:36,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/IThread.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:33,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/usr/include/c++/8/bits/stl_algobase.h: In function 'void std::iter_swap(_ForwardIterator1, _ForwardIterator2) [with _ForwardIterator1 = __gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<32>::Count*, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> > >; _ForwardIterator2 = __gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<32>::Count*, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> > >]':
/usr/include/c++/8/bits/stl_algobase.h:120:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<32>::Count*, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> > >' changed in GCC 7.1
iter_swap(_ForwardIterator1 __a, _ForwardIterator2 __b)
^~~~~~~~~
/usr/include/c++/8/bits/stl_algobase.h:120:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<32>::Count*, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> > >' changed in GCC 7.1
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<32>::Count*, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> > >; _Distance = int; _Tp = gatb::core::kmer::impl::Kmer<32>::Count; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<32>::Count*, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> > >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<32>::Count*, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<32>::Count*, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> > >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<32>::Count*, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<32>::Count*, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:84:20: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<32>::Count*, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> > >' changed in GCC 7.1
std::iter_swap(__result, __b);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:86:20: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<32>::Count*, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> > >' changed in GCC 7.1
std::iter_swap(__result, __c);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:88:20: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<32>::Count*, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> > >' changed in GCC 7.1
std::iter_swap(__result, __a);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<32>::Count*, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> > >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:34,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void gatb::core::debruijn::impl::BranchingAlgorithm<span>::execute() [with unsigned int span = 32]':
/usr/include/c++/8/bits/stl_vector.h:1549:4: note: parameter passing for argument of type 'std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<32>::Count*, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> > >'} changed in GCC 7.1
_M_range_insert(__pos, __first, __last,
^~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1549:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<32>::Count*, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> > >' changed in GCC 7.1
In file included from /usr/include/c++/8/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<32>::Count*, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<32>::Count*, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<32>::Count*, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<64>::Count*, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<64>::Count*, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> > >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<64>::Count*, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<64>::Count*, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> > >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<64>::Count*, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> > >' changed in GCC 7.1
std::__heap_select(__first, __middle, __last, __comp);
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In member function 'void gatb::core::debruijn::impl::BranchingAlgorithm<span>::execute() [with unsigned int span = 64]':
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<64>::Count*, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<64>::Count*, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<64>::Count*, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<96>::Count*, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<96>::Count*, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> > >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<96>::Count*, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<96>::Count*, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> > >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<96>::Count*, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> > >' changed in GCC 7.1
std::__heap_select(__first, __middle, __last, __comp);
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In member function 'void gatb::core::debruijn::impl::BranchingAlgorithm<span>::execute() [with unsigned int span = 96]':
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<96>::Count*, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<96>::Count*, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<96>::Count*, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<128>::Count*, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<128>::Count*, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> > >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<128>::Count*, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<128>::Count*, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> > >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<128>::Count*, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> > >' changed in GCC 7.1
std::__heap_select(__first, __middle, __last, __comp);
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In member function 'void gatb::core::debruijn::impl::BranchingAlgorithm<span>::execute() [with unsigned int span = 128]':
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<128>::Count*, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<128>::Count*, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<128>::Count*, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:34,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/usr/include/c++/8/bits/vector.tcc: In member function 'void gatb::core::tools::dp::IDispatcher::IteratorCommand<Item, Functor>::execute() [with Item = gatb::core::debruijn::impl::Node; Functor = gatb::core::debruijn::impl::BranchingAlgorithm<span>::execute() [with unsigned int span = 128]::<lambda(const gatb::core::debruijn::impl::Node&)>]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<128>::Count*, std::vector<gatb::core::kmer::impl::Kmer<128>::Count, std::allocator<gatb::core::kmer::impl::Kmer<128>::Count> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void gatb::core::tools::dp::IDispatcher::IteratorCommand<Item, Functor>::execute() [with Item = gatb::core::debruijn::impl::Node; Functor = gatb::core::debruijn::impl::BranchingAlgorithm<span>::execute() [with unsigned int span = 96]::<lambda(const gatb::core::debruijn::impl::Node&)>]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<96>::Count*, std::vector<gatb::core::kmer::impl::Kmer<96>::Count, std::allocator<gatb::core::kmer::impl::Kmer<96>::Count> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void gatb::core::tools::dp::IDispatcher::IteratorCommand<Item, Functor>::execute() [with Item = gatb::core::debruijn::impl::Node; Functor = gatb::core::debruijn::impl::BranchingAlgorithm<span>::execute() [with unsigned int span = 64]::<lambda(const gatb::core::debruijn::impl::Node&)>]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<64>::Count*, std::vector<gatb::core::kmer::impl::Kmer<64>::Count, std::allocator<gatb::core::kmer::impl::Kmer<64>::Count> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void gatb::core::tools::dp::IDispatcher::IteratorCommand<Item, Functor>::execute() [with Item = gatb::core::debruijn::impl::Node; Functor = gatb::core::debruijn::impl::BranchingAlgorithm<span>::execute() [with unsigned int span = 32]::<lambda(const gatb::core::debruijn::impl::Node&)>]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::kmer::impl::Kmer<32>::Count*, std::vector<gatb::core::kmer::impl::Kmer<32>::Count, std::allocator<gatb::core::kmer::impl::Kmer<32>::Count> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
[ 17%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Frontline.hpp:25,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Frontline.cpp:24:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile<Item>::fill(std::vector<Item>&, size_t)':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type]
}
^
In file included from /usr/include/c++/8/deque:66,
from /usr/include/boost/detail/container_fwd.hpp:91,
from /usr/include/boost/container_hash/extensions.hpp:22,
from /usr/include/boost/container_hash/hash.hpp:760,
from /usr/include/boost/type_index/stl_type_index.hpp:43,
from /usr/include/boost/type_index.hpp:29,
from /usr/include/boost/variant/variant.hpp:21,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/Model.hpp:35,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Frontline.hpp:25,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Frontline.cpp:24:
/usr/include/c++/8/bits/deque.tcc: In function 'std::_Deque_iterator<_Tp, _Tp&, _Tp*> std::copy(std::_Deque_iterator<_Tp, const _Tp&, const _Tp*>, std::_Deque_iterator<_Tp, const _Tp&, const _Tp*>, std::_Deque_iterator<_Tp, _Tp&, _Tp*>) [with _Tp = gatb::core::debruijn::impl::NodeNt]':
/usr/include/c++/8/bits/deque.tcc:986:5: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt, const gatb::core::debruijn::impl::NodeNt&, const gatb::core::debruijn::impl::NodeNt*>' changed in GCC 7.1
copy(_Deque_iterator<_Tp, const _Tp&, const _Tp*> __first,
^~~~
/usr/include/c++/8/bits/deque.tcc:986:5: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt, const gatb::core::debruijn::impl::NodeNt&, const gatb::core::debruijn::impl::NodeNt*>' changed in GCC 7.1
/usr/include/c++/8/bits/deque.tcc: In member function 'void std::deque<_Tp, _Alloc>::_M_insert_aux(std::deque<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::deque<_Tp, _Alloc>::size_type) [with _ForwardIterator = std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt, const gatb::core::debruijn::impl::NodeNt&, const gatb::core::debruijn::impl::NodeNt*>; _Tp = gatb::core::debruijn::impl::NodeNt; _Alloc = std::allocator<gatb::core::debruijn::impl::NodeNt>]':
/usr/include/c++/8/bits/deque.tcc:758:7: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt, const gatb::core::debruijn::impl::NodeNt&, const gatb::core::debruijn::impl::NodeNt*>' changed in GCC 7.1
deque<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/deque.tcc:758:7: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt, const gatb::core::debruijn::impl::NodeNt&, const gatb::core::debruijn::impl::NodeNt*>' changed in GCC 7.1
/usr/include/c++/8/bits/deque.tcc:781:7: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt, const gatb::core::debruijn::impl::NodeNt&, const gatb::core::debruijn::impl::NodeNt*>' changed in GCC 7.1
std::copy(__first, __last, __pos - difference_type(__n));
^~~
/usr/include/c++/8/bits/deque.tcc:781:7: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt, const gatb::core::debruijn::impl::NodeNt&, const gatb::core::debruijn::impl::NodeNt*>' changed in GCC 7.1
/usr/include/c++/8/bits/deque.tcc:781:7: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt, const gatb::core::debruijn::impl::NodeNt&, const gatb::core::debruijn::impl::NodeNt*>' changed in GCC 7.1
/usr/include/c++/8/bits/deque.tcc:792:7: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt, const gatb::core::debruijn::impl::NodeNt&, const gatb::core::debruijn::impl::NodeNt*>' changed in GCC 7.1
std::copy(__mid, __last, __old_start);
^~~
/usr/include/c++/8/bits/deque.tcc:792:7: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt, const gatb::core::debruijn::impl::NodeNt&, const gatb::core::debruijn::impl::NodeNt*>' changed in GCC 7.1
/usr/include/c++/8/bits/deque.tcc:792:7: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt, const gatb::core::debruijn::impl::NodeNt&, const gatb::core::debruijn::impl::NodeNt*>' changed in GCC 7.1
/usr/include/c++/8/bits/deque.tcc:821:5: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt, const gatb::core::debruijn::impl::NodeNt&, const gatb::core::debruijn::impl::NodeNt*>' changed in GCC 7.1
std::copy(__first, __last, __pos);
^~~
/usr/include/c++/8/bits/deque.tcc:821:5: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt, const gatb::core::debruijn::impl::NodeNt&, const gatb::core::debruijn::impl::NodeNt*>' changed in GCC 7.1
/usr/include/c++/8/bits/deque.tcc:821:5: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt, const gatb::core::debruijn::impl::NodeNt&, const gatb::core::debruijn::impl::NodeNt*>' changed in GCC 7.1
/usr/include/c++/8/bits/deque.tcc:832:5: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt, const gatb::core::debruijn::impl::NodeNt&, const gatb::core::debruijn::impl::NodeNt*>' changed in GCC 7.1
std::copy(__first, __mid, __pos);
^~~
/usr/include/c++/8/bits/deque.tcc:832:5: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt, const gatb::core::debruijn::impl::NodeNt&, const gatb::core::debruijn::impl::NodeNt*>' changed in GCC 7.1
/usr/include/c++/8/bits/deque.tcc:832:5: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt, const gatb::core::debruijn::impl::NodeNt&, const gatb::core::debruijn::impl::NodeNt*>' changed in GCC 7.1
/usr/include/c++/8/bits/deque.tcc: In member function 'std::deque<_Tp, _Alloc>& std::deque<_Tp, _Alloc>::operator=(const std::deque<_Tp, _Alloc>&) [with _Tp = gatb::core::debruijn::impl::NodeNt; _Alloc = std::allocator<gatb::core::debruijn::impl::NodeNt>]':
/usr/include/c++/8/bits/deque.tcc:117:6: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt, const gatb::core::debruijn::impl::NodeNt&, const gatb::core::debruijn::impl::NodeNt*>' changed in GCC 7.1
_M_erase_at_end(std::copy(__x.begin(), __x.end(),
^~~~~~~~~~~~~~~
/usr/include/c++/8/bits/deque.tcc:117:6: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt, const gatb::core::debruijn::impl::NodeNt&, const gatb::core::debruijn::impl::NodeNt*>' changed in GCC 7.1
/usr/include/c++/8/bits/deque.tcc:117:6: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt, const gatb::core::debruijn::impl::NodeNt&, const gatb::core::debruijn::impl::NodeNt*>' changed in GCC 7.1
/usr/include/c++/8/bits/deque.tcc:122:8: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt, const gatb::core::debruijn::impl::NodeNt&, const gatb::core::debruijn::impl::NodeNt*>' changed in GCC 7.1
std::copy(__x.begin(), __mid, this->_M_impl._M_start);
^~~
/usr/include/c++/8/bits/deque.tcc:122:8: note: parameter passing for argument of type 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt, const gatb::core::debruijn::impl::NodeNt&, const gatb::core::debruijn::impl::NodeNt*>' changed in GCC 7.1
/usr/include/c++/8/bits/deque.tcc:122:8: note: parameter passing for argument of type 'std::deque<gatb::core::debruijn::impl::NodeNt, std::allocator<gatb::core::debruijn::impl::NodeNt> >::const_iterator' {aka 'std::_Deque_iterator<gatb::core::debruijn::impl::NodeNt, const gatb::core::debruijn::impl::NodeNt&, const gatb::core::debruijn::impl::NodeNt*>'} changed in GCC 7.1
[ 17%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile<Item>::fill(std::vector<Item>&, size_t)':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type]
}
^
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp: In static member function 'static gatb::core::debruijn::impl::Graph gatb::core::debruijn::impl::Graph::create(gatb::core::bank::IBank*, const char*, ...)':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:566:15: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
vasprintf (&buffer, fmt, args);
~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp: In static member function 'static gatb::core::debruijn::impl::Graph gatb::core::debruijn::impl::Graph::create(const char*, ...)':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:590:15: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
vasprintf (&buffer, fmt, args);
~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:30:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function 'static std::__cxx11::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
vasprintf (&buffer, fmt, args);
~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:63,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/IBank.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/usr/include/c++/8/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<gatb::core::debruijn::impl::BranchingNode*>; _ForwardIterator = gatb::core::debruijn::impl::BranchingNode*; bool _TrivialValueTypes = false]':
/usr/include/c++/8/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type 'std::move_iterator<gatb::core::debruijn::impl::BranchingNode*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type 'std::move_iterator<gatb::core::debruijn::impl::BranchingNode*>' changed in GCC 7.1
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/IBank.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::debruijn::impl::BranchingNode&}; _Tp = gatb::core::debruijn::impl::BranchingNode; _Alloc = std::allocator<gatb::core::debruijn::impl::BranchingNode>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<gatb::core::debruijn::impl::BranchingNode, std::allocator<gatb::core::debruijn::impl::BranchingNode> >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::BranchingNode*, std::vector<gatb::core::debruijn::impl::BranchingNode, std::allocator<gatb::core::debruijn::impl::BranchingNode> > >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/map:60,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/System.hpp:38,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/api/Data.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/Sequence.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/IBank.hpp:33,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/usr/include/c++/8/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = gatb::core::debruijn::impl::BranchingNode; _Val = gatb::core::debruijn::impl::BranchingNode; _KeyOfValue = std::_Identity<gatb::core::debruijn::impl::BranchingNode>; _Compare = std::less<gatb::core::debruijn::impl::BranchingNode>; _Alloc = std::allocator<gatb::core::debruijn::impl::BranchingNode>]':
/usr/include/c++/8/bits/stl_tree.h:2146:5: note: parameter passing for argument of type 'std::_Rb_tree<gatb::core::debruijn::impl::BranchingNode, gatb::core::debruijn::impl::BranchingNode, std::_Identity<gatb::core::debruijn::impl::BranchingNode>, std::less<gatb::core::debruijn::impl::BranchingNode>, std::allocator<gatb::core::debruijn::impl::BranchingNode> >::const_iterator' {aka 'std::_Rb_tree_const_iterator<gatb::core::debruijn::impl::BranchingNode>'} changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp: In member function 'std::set<T> gatb::core::debruijn::impl::Graph::neighbors(IteratorInput, IteratorInput) const [with T = gatb::core::debruijn::impl::BranchingNode; IteratorInput = std::_Rb_tree_const_iterator<gatb::core::debruijn::impl::BranchingNode>]':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:2139:25: note: parameter passing for argument of type 'std::set<gatb::core::debruijn::impl::BranchingNode>::iterator' {aka 'std::_Rb_tree_const_iterator<gatb::core::debruijn::impl::BranchingNode>'} changed in GCC 7.1
std::set<BranchingNode> Graph::neighbors (std::set<BranchingNode>::iterator first, std::set<BranchingNode>::iterator last) const
^~~~~
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:2139:25: note: parameter passing for argument of type 'std::set<gatb::core::debruijn::impl::BranchingNode>::iterator' {aka 'std::_Rb_tree_const_iterator<gatb::core::debruijn::impl::BranchingNode>'} changed in GCC 7.1
In file included from /usr/include/c++/8/vector:63,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/IBank.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/usr/include/c++/8/bits/stl_uninitialized.h:134:15: note: parameter passing for argument of type 'std::move_iterator<gatb::core::debruijn::impl::BranchingNode*>' changed in GCC 7.1
return std::__uninitialized_copy<__is_trivial(_ValueType1)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
&& __is_trivial(_ValueType2)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~
&& __assignable>::
~~~~~~~~~~~~~~~~~~
__uninit_copy(__first, __last, __result);
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/IBank.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20:
/usr/include/c++/8/bits/stl_vector.h: In member function 'virtual void gatb::core::debruijn::impl::Graph::neighbors(IteratorInput, IteratorInput) const [with T = gatb::core::debruijn::impl::BranchingNode; IteratorInput = std::_Rb_tree_const_iterator<gatb::core::debruijn::impl::BranchingNode>]::Cmd::execute()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::debruijn::impl::BranchingNode*, std::vector<gatb::core::debruijn::impl::BranchingNode, std::allocator<gatb::core::debruijn::impl::BranchingNode> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
[ 21%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile<Item>::fill(std::vector<Item>&, size_t)':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type]
}
^
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/IBank.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::tools::math::IntegerTemplate<gatb::core::tools::math::LargeInt<1>, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >&}; _Tp = gatb::core::tools::math::IntegerTemplate<gatb::core::tools::math::LargeInt<1>, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >; _Alloc = std::allocator<gatb::core::tools::math::IntegerTemplate<gatb::core::tools::math::LargeInt<1>, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> > >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<gatb::core::tools::math::IntegerTemplate<gatb::core::tools::math::LargeInt<1>, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >, std::allocator<gatb::core::tools::math::IntegerTemplate<gatb::core::tools::math::LargeInt<1>, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> > > >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::tools::math::IntegerTemplate<gatb::core::tools::math::LargeInt<1>, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >*, std::vector<gatb::core::tools::math::IntegerTemplate<gatb::core::tools::math::LargeInt<1>, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >, std::allocator<gatb::core::tools::math::IntegerTemplate<gatb::core::tools::math::LargeInt<1>, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> > > > >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/IBank.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24:
/usr/include/c++/8/bits/stl_vector.h: In constructor 'gatb::core::debruijn::impl::BranchingTerminator::BranchingTerminator(const gatb::core::debruijn::impl::Graph&)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::IntegerTemplate<gatb::core::tools::math::LargeInt<1>, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >*, std::vector<gatb::core::tools::math::IntegerTemplate<gatb::core::tools::math::LargeInt<1>, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >, std::allocator<gatb::core::tools::math::IntegerTemplate<gatb::core::tools::math::LargeInt<1>, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> > > > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In constructor 'gatb::core::debruijn::impl::BranchingTerminator::BranchingTerminator(const gatb::core::debruijn::impl::Graph&)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::IntegerTemplate<gatb::core::tools::math::LargeInt<1>, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >*, std::vector<gatb::core::tools::math::IntegerTemplate<gatb::core::tools::math::LargeInt<1>, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >, std::allocator<gatb::core::tools::math::IntegerTemplate<gatb::core::tools::math::LargeInt<1>, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> > > > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/Model.hpp:35,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24:
/usr/include/c++/8/bits/stl_algo.h: In function 'bool std::binary_search(_FIter, _FIter, const _Tp&) [with _FIter = __gnu_cxx::__normal_iterator<const gatb::core::tools::math::IntegerTemplate<gatb::core::tools::math::LargeInt<1>, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >*, std::vector<gatb::core::tools::math::IntegerTemplate<gatb::core::tools::math::LargeInt<1>, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >, std::allocator<gatb::core::tools::math::IntegerTemplate<gatb::core::tools::math::LargeInt<1>, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> > > > >; _Tp = gatb::core::tools::math::IntegerTemplate<gatb::core::tools::math::LargeInt<1>, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >]':
/usr/include/c++/8/bits/stl_algo.h:2247:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const gatb::core::tools::math::IntegerTemplate<gatb::core::tools::math::LargeInt<1>, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >*, std::vector<gatb::core::tools::math::IntegerTemplate<gatb::core::tools::math::LargeInt<1>, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >, std::allocator<gatb::core::tools::math::IntegerTemplate<gatb::core::tools::math::LargeInt<1>, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> > > > >' changed in GCC 7.1
binary_search(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:2247:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const gatb::core::tools::math::IntegerTemplate<gatb::core::tools::math::LargeInt<1>, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >*, std::vector<gatb::core::tools::math::IntegerTemplate<gatb::core::tools::math::LargeInt<1>, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >, std::allocator<gatb::core::tools::math::IntegerTemplate<gatb::core::tools::math::LargeInt<1>, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> > > > >' changed in GCC 7.1
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp: In member function 'bool gatb::core::debruijn::impl::BranchingTerminator::is_indexed(const gatb::core::debruijn::impl::Node&) const':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:42:69: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const gatb::core::tools::math::IntegerTemplate<gatb::core::tools::math::LargeInt<1>, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >*, std::vector<gatb::core::tools::math::IntegerTemplate<gatb::core::tools::math::LargeInt<1>, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >, std::allocator<gatb::core::tools::math::IntegerTemplate<gatb::core::tools::math::LargeInt<1>, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> > > > >' changed in GCC 7.1
bool contains(const Item& elem) const { return binary_search(liste.begin(), liste.end(), elem); }
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp: In member function 'virtual bool gatb::core::debruijn::impl::BranchingTerminator::is_marked(const gatb::core::debruijn::impl::Node&) const':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:42:69: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const gatb::core::tools::math::IntegerTemplate<gatb::core::tools::math::LargeInt<1>, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >*, std::vector<gatb::core::tools::math::IntegerTemplate<gatb::core::tools::math::LargeInt<1>, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >, std::allocator<gatb::core::tools::math::IntegerTemplate<gatb::core::tools::math::LargeInt<1>, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> > > > >' changed in GCC 7.1
bool contains(const Item& elem) const { return binary_search(liste.begin(), liste.end(), elem); }
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:42:69: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const gatb::core::tools::math::IntegerTemplate<gatb::core::tools::math::LargeInt<1>, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >*, std::vector<gatb::core::tools::math::IntegerTemplate<gatb::core::tools::math::LargeInt<1>, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >, std::allocator<gatb::core::tools::math::IntegerTemplate<gatb::core::tools::math::LargeInt<1>, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> > > > >' changed in GCC 7.1
bool contains(const Item& elem) const { return binary_search(liste.begin(), liste.end(), elem); }
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp: In member function 'virtual void gatb::core::debruijn::impl::BranchingTerminator::mark(const gatb::core::debruijn::impl::Edge&)':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:42:69: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const gatb::core::tools::math::IntegerTemplate<gatb::core::tools::math::LargeInt<1>, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >*, std::vector<gatb::core::tools::math::IntegerTemplate<gatb::core::tools::math::LargeInt<1>, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >, std::allocator<gatb::core::tools::math::IntegerTemplate<gatb::core::tools::math::LargeInt<1>, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> > > > >' changed in GCC 7.1
bool contains(const Item& elem) const { return binary_search(liste.begin(), liste.end(), elem); }
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp: In member function 'virtual void gatb::core::debruijn::impl::BranchingTerminator::mark(const gatb::core::debruijn::impl::Node&)':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:42:69: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const gatb::core::tools::math::IntegerTemplate<gatb::core::tools::math::LargeInt<1>, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >*, std::vector<gatb::core::tools::math::IntegerTemplate<gatb::core::tools::math::LargeInt<1>, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >, std::allocator<gatb::core::tools::math::IntegerTemplate<gatb::core::tools::math::LargeInt<1>, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> > > > >' changed in GCC 7.1
bool contains(const Item& elem) const { return binary_search(liste.begin(), liste.end(), elem); }
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:42:69: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const gatb::core::tools::math::IntegerTemplate<gatb::core::tools::math::LargeInt<1>, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >*, std::vector<gatb::core::tools::math::IntegerTemplate<gatb::core::tools::math::LargeInt<1>, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >, std::allocator<gatb::core::tools::math::IntegerTemplate<gatb::core::tools::math::LargeInt<1>, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> > > > >' changed in GCC 7.1
bool contains(const Item& elem) const { return binary_search(liste.begin(), liste.end(), elem); }
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 21%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:24:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile<Item>::fill(std::vector<Item>&, size_t)':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type]
}
^
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In member function 'bool gatb::core::debruijn::impl::MonumentTraversal::validate_consensuses(std::set<gatb::core::debruijn::impl::Path>&, gatb::core::debruijn::impl::Path&)':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:675:23: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::set<gatb::core::debruijn::impl::Path>::size_type' {aka 'unsigned int'} [-Wformat=]
if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In member function 'gatb::core::debruijn::impl::Path gatb::core::debruijn::impl::MonumentTraversal::most_abundant_consensus(std::set<gatb::core::debruijn::impl::Path>&)':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:772:20: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long int' [-Wformat=]
printf("path: %s mean abundance: %d\n",p_str.c_str(),mean_abundance);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/map:60,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/System.hpp:38,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/api/Data.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/Sequence.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/IBank.hpp:33,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:24:
/usr/include/c++/8/bits/stl_tree.h: In member function 'void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_insert_unique(_II, _II) [with _InputIterator = std::_Rb_tree_const_iterator<gatb::core::debruijn::impl::Path>; _Key = gatb::core::debruijn::impl::Path; _Val = gatb::core::debruijn::impl::Path; _KeyOfValue = std::_Identity<gatb::core::debruijn::impl::Path>; _Compare = std::less<gatb::core::debruijn::impl::Path>; _Alloc = std::allocator<gatb::core::debruijn::impl::Path>]':
/usr/include/c++/8/bits/stl_tree.h:2463:7: note: parameter passing for argument of type 'std::_Rb_tree_const_iterator<gatb::core::debruijn::impl::Path>' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KoV, _Cmp, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_tree.h:2463:7: note: parameter passing for argument of type 'std::_Rb_tree_const_iterator<gatb::core::debruijn::impl::Path>' changed in GCC 7.1
In file included from /usr/include/c++/8/set:61,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:30,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/Model.hpp:35,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:24:
/usr/include/c++/8/bits/stl_set.h: In member function 'std::set<gatb::core::debruijn::impl::Path> gatb::core::debruijn::impl::MonumentTraversal::all_consensuses_between(gatb::core::debruijn::impl::Direction, const gatb::core::debruijn::impl::Node&, const gatb::core::debruijn::impl::Node&, int, std::set<gatb::core::tools::math::IntegerTemplate<gatb::core::tools::math::LargeInt<1>, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> > >, gatb::core::debruijn::impl::Path, bool&)':
/usr/include/c++/8/bits/stl_set.h:567:4: note: parameter passing for argument of type 'std::_Rb_tree_const_iterator<gatb::core::debruijn::impl::Path>' changed in GCC 7.1
{ _M_t._M_insert_unique(__first, __last); }
^~~~
[ 25%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.hpp:35,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp:20:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile<Item>::fill(std::vector<Item>&, size_t)':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type]
}
^
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.hpp:35,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp:20:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt8]':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
vasprintf (&buffer, fmt, args);
~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 25%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o
[ 28%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile<Item>::fill(std::vector<Item>&, size_t)':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type]
}
^
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt8]':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
vasprintf (&buffer, fmt, args);
~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<4>]':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<3>]':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<2>]':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<1>]':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<4>*, std::vector<gatb::core::tools::math::LargeInt<4>, std::allocator<gatb::core::tools::math::LargeInt<4> > > >; _Distance = int; _Tp = gatb::core::tools::math::LargeInt<4>; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<4>*, std::vector<gatb::core::tools::math::LargeInt<4>, std::allocator<gatb::core::tools::math::LargeInt<4> > > >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<4>*, std::vector<gatb::core::tools::math::LargeInt<4>, std::allocator<gatb::core::tools::math::LargeInt<4> > > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<4>*, std::vector<gatb::core::tools::math::LargeInt<4>, std::allocator<gatb::core::tools::math::LargeInt<4> > > >' changed in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<4>*, std::vector<gatb::core::tools::math::LargeInt<4>, std::allocator<gatb::core::tools::math::LargeInt<4> > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<4>*, std::vector<gatb::core::tools::math::LargeInt<4>, std::allocator<gatb::core::tools::math::LargeInt<4> > > >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<4>*, std::vector<gatb::core::tools::math::LargeInt<4>, std::allocator<gatb::core::tools::math::LargeInt<4> > > >' changed in GCC 7.1
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >; _Distance = int; _Tp = gatb::core::tools::math::LargeInt<3>; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >' changed in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >' changed in GCC 7.1
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1>, std::allocator<gatb::core::tools::math::LargeInt<1> > > >; _Distance = int; _Tp = gatb::core::tools::math::LargeInt<1>; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1>, std::allocator<gatb::core::tools::math::LargeInt<1> > > >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1>, std::allocator<gatb::core::tools::math::LargeInt<1> > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1>, std::allocator<gatb::core::tools::math::LargeInt<1> > > >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1>, std::allocator<gatb::core::tools::math::LargeInt<1> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1>, std::allocator<gatb::core::tools::math::LargeInt<1> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1>, std::allocator<gatb::core::tools::math::LargeInt<1> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1>, std::allocator<gatb::core::tools::math::LargeInt<1> > > >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1>, std::allocator<gatb::core::tools::math::LargeInt<1> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1>, std::allocator<gatb::core::tools::math::LargeInt<1> > > >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >' changed in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >' changed in GCC 7.1
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >; _Distance = int; _Tp = gatb::core::tools::math::LargeInt<2>; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:34,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::tools::math::LargeInt<1>&}; _Tp = gatb::core::tools::math::LargeInt<1>; _Alloc = std::allocator<gatb::core::tools::math::LargeInt<1> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<gatb::core::tools::math::LargeInt<1>, std::allocator<gatb::core::tools::math::LargeInt<1> > >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1>, std::allocator<gatb::core::tools::math::LargeInt<1> > > >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::tools::math::LargeInt<2>&}; _Tp = gatb::core::tools::math::LargeInt<2>; _Alloc = std::allocator<gatb::core::tools::math::LargeInt<2> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >'} changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::tools::math::LargeInt<3>&}; _Tp = gatb::core::tools::math::LargeInt<3>; _Alloc = std::allocator<gatb::core::tools::math::LargeInt<3> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >'} changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::tools::math::LargeInt<4>&}; _Tp = gatb::core::tools::math::LargeInt<4>; _Alloc = std::allocator<gatb::core::tools::math::LargeInt<4> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<gatb::core::tools::math::LargeInt<4>, std::allocator<gatb::core::tools::math::LargeInt<4> > >::iterator' {aka '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<4>*, std::vector<gatb::core::tools::math::LargeInt<4>, std::allocator<gatb::core::tools::math::LargeInt<4> > > >'} changed in GCC 7.1
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:34,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/8/bits/stl_vector.h: In function 'gatb::core::tools::collections::Container<Item>* gatb::core::tools::storage::impl::StorageTools::loadContainer(gatb::core::tools::storage::impl::Group&, const string&) [with T = gatb::core::tools::math::LargeInt<1>]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1>, std::allocator<gatb::core::tools::math::LargeInt<1> > > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1>, std::allocator<gatb::core::tools::math::LargeInt<1> > > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1>, std::allocator<gatb::core::tools::math::LargeInt<1> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1>, std::allocator<gatb::core::tools::math::LargeInt<1> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/set:60,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:30,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/8/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<long long int&&>, std::tuple<>}; _Key = long long int; _Val = std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<1> >*>; _KeyOfValue = std::_Select1st<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<1> >*> >; _Compare = std::less<long long int>; _Alloc = std::allocator<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<1> >*> >]':
/usr/include/c++/8/bits/stl_tree.h:2411:7: note: parameter passing for argument of type 'std::_Rb_tree<long long int, std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<1> >*>, std::_Select1st<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<1> >*> >, std::less<long long int>, std::allocator<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<1> >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<1> >*> >'} changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/map:61,
from /usr/include/boost/detail/container_fwd.hpp:94,
from /usr/include/boost/container_hash/extensions.hpp:22,
from /usr/include/boost/container_hash/hash.hpp:760,
from /usr/include/boost/type_index/stl_type_index.hpp:43,
from /usr/include/boost/type_index.hpp:29,
from /usr/include/boost/variant/variant.hpp:21,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/8/bits/stl_map.h: In member function 'T& gatb::core::system::impl::ThreadObject<T>::operator()() [with T = gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<1> >]':
/usr/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<long long int, std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<1> >*>, std::_Select1st<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<1> >*> >, std::less<long long int>, std::allocator<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<1> >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<1> >*> >'} changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<long long int, std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<1> >*>, std::_Select1st<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<1> >*> >, std::less<long long int>, std::allocator<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<1> >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<1> >*> >'} changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/8/set:60,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:30,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/8/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<long long int&&>, std::tuple<>}; _Key = long long int; _Val = std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<2> >*>; _KeyOfValue = std::_Select1st<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<2> >*> >; _Compare = std::less<long long int>; _Alloc = std::allocator<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<2> >*> >]':
/usr/include/c++/8/bits/stl_tree.h:2411:7: note: parameter passing for argument of type 'std::_Rb_tree<long long int, std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<2> >*>, std::_Select1st<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<2> >*> >, std::less<long long int>, std::allocator<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<2> >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<2> >*> >'} changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/map:61,
from /usr/include/boost/detail/container_fwd.hpp:94,
from /usr/include/boost/container_hash/extensions.hpp:22,
from /usr/include/boost/container_hash/hash.hpp:760,
from /usr/include/boost/type_index/stl_type_index.hpp:43,
from /usr/include/boost/type_index.hpp:29,
from /usr/include/boost/variant/variant.hpp:21,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/8/bits/stl_map.h: In member function 'T& gatb::core::system::impl::ThreadObject<T>::operator()() [with T = gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<2> >]':
/usr/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<long long int, std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<2> >*>, std::_Select1st<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<2> >*> >, std::less<long long int>, std::allocator<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<2> >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<2> >*> >'} changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<long long int, std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<2> >*>, std::_Select1st<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<2> >*> >, std::less<long long int>, std::allocator<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<2> >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<2> >*> >'} changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/8/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >' changed in GCC 7.1
__heap_select(_RandomAccessIterator __first,
^~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >' changed in GCC 7.1
In file included from /usr/include/c++/8/set:60,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:30,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/8/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<long long int&&>, std::tuple<>}; _Key = long long int; _Val = std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<3> >*>; _KeyOfValue = std::_Select1st<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<3> >*> >; _Compare = std::less<long long int>; _Alloc = std::allocator<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<3> >*> >]':
/usr/include/c++/8/bits/stl_tree.h:2411:7: note: parameter passing for argument of type 'std::_Rb_tree<long long int, std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<3> >*>, std::_Select1st<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<3> >*> >, std::less<long long int>, std::allocator<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<3> >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<3> >*> >'} changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/map:61,
from /usr/include/boost/detail/container_fwd.hpp:94,
from /usr/include/boost/container_hash/extensions.hpp:22,
from /usr/include/boost/container_hash/hash.hpp:760,
from /usr/include/boost/type_index/stl_type_index.hpp:43,
from /usr/include/boost/type_index.hpp:29,
from /usr/include/boost/variant/variant.hpp:21,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/8/bits/stl_map.h: In member function 'T& gatb::core::system::impl::ThreadObject<T>::operator()() [with T = gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<3> >]':
/usr/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<long long int, std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<3> >*>, std::_Select1st<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<3> >*> >, std::less<long long int>, std::allocator<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<3> >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<3> >*> >'} changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<long long int, std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<3> >*>, std::_Select1st<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<3> >*> >, std::less<long long int>, std::allocator<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<3> >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<3> >*> >'} changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/8/set:60,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:30,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/8/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<long long int&&>, std::tuple<>}; _Key = long long int; _Val = std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<4> >*>; _KeyOfValue = std::_Select1st<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<4> >*> >; _Compare = std::less<long long int>; _Alloc = std::allocator<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<4> >*> >]':
/usr/include/c++/8/bits/stl_tree.h:2411:7: note: parameter passing for argument of type 'std::_Rb_tree<long long int, std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<4> >*>, std::_Select1st<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<4> >*> >, std::less<long long int>, std::allocator<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<4> >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<4> >*> >'} changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/map:61,
from /usr/include/boost/detail/container_fwd.hpp:94,
from /usr/include/boost/container_hash/extensions.hpp:22,
from /usr/include/boost/container_hash/hash.hpp:760,
from /usr/include/boost/type_index/stl_type_index.hpp:43,
from /usr/include/boost/type_index.hpp:29,
from /usr/include/boost/variant/variant.hpp:21,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/8/bits/stl_map.h: In member function 'T& gatb::core::system::impl::ThreadObject<T>::operator()() [with T = gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<4> >]':
/usr/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<long long int, std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<4> >*>, std::_Select1st<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<4> >*> >, std::less<long long int>, std::allocator<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<4> >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<4> >*> >'} changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<long long int, std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<4> >*>, std::_Select1st<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<4> >*> >, std::less<long long int>, std::allocator<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<4> >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long int, gatb::core::tools::collections::impl::BagCache<gatb::core::tools::math::LargeInt<4> >*> >'} changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:34,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void gatb::core::kmer::impl::DebloomAlgorithm<span>::createCFP(gatb::core::tools::collections::Collection<typename gatb::core::kmer::impl::Kmer<span>::Type>*, gatb::core::tools::misc::IProperties*, u_int64_t&) [with unsigned int span = 32]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1>, std::allocator<gatb::core::tools::math::LargeInt<1> > > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1>, std::allocator<gatb::core::tools::math::LargeInt<1> > > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1>, std::allocator<gatb::core::tools::math::LargeInt<1> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1>, std::allocator<gatb::core::tools::math::LargeInt<1> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >' changed in GCC 7.1
std::__heap_select(__first, __middle, __last, __comp);
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:34,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void gatb::core::kmer::impl::DebloomAlgorithm<span>::createCFP(gatb::core::tools::collections::Collection<typename gatb::core::kmer::impl::Kmer<span>::Type>*, gatb::core::tools::misc::IProperties*, u_int64_t&) [with unsigned int span = 64]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:34,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/8/bits/stl_vector.h: In function 'gatb::core::tools::collections::Container<Item>* gatb::core::tools::storage::impl::StorageTools::loadContainer(gatb::core::tools::storage::impl::Group&, const string&) [with T = gatb::core::tools::math::LargeInt<2>]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:34,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void gatb::core::kmer::impl::DebloomAlgorithm<span>::createCFP(gatb::core::tools::collections::Collection<typename gatb::core::kmer::impl::Kmer<span>::Type>*, gatb::core::tools::misc::IProperties*, u_int64_t&) [with unsigned int span = 96]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:34,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/8/bits/stl_vector.h: In function 'gatb::core::tools::collections::Container<Item>* gatb::core::tools::storage::impl::StorageTools::loadContainer(gatb::core::tools::storage::impl::Group&, const string&) [with T = gatb::core::tools::math::LargeInt<3>]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<4>*, std::vector<gatb::core::tools::math::LargeInt<4>, std::allocator<gatb::core::tools::math::LargeInt<4> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<4>*, std::vector<gatb::core::tools::math::LargeInt<4>, std::allocator<gatb::core::tools::math::LargeInt<4> > > >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<4>*, std::vector<gatb::core::tools::math::LargeInt<4>, std::allocator<gatb::core::tools::math::LargeInt<4> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<4>*, std::vector<gatb::core::tools::math::LargeInt<4>, std::allocator<gatb::core::tools::math::LargeInt<4> > > >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:34,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void gatb::core::kmer::impl::DebloomAlgorithm<span>::createCFP(gatb::core::tools::collections::Collection<typename gatb::core::kmer::impl::Kmer<span>::Type>*, gatb::core::tools::misc::IProperties*, u_int64_t&) [with unsigned int span = 128]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<4>*, std::vector<gatb::core::tools::math::LargeInt<4>, std::allocator<gatb::core::tools::math::LargeInt<4> > > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<4>*, std::vector<gatb::core::tools::math::LargeInt<4>, std::allocator<gatb::core::tools::math::LargeInt<4> > > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<4>*, std::vector<gatb::core::tools::math::LargeInt<4>, std::allocator<gatb::core::tools::math::LargeInt<4> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<4>*, std::vector<gatb::core::tools::math::LargeInt<4>, std::allocator<gatb::core::tools::math::LargeInt<4> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:34,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/8/bits/stl_vector.h: In function 'gatb::core::tools::collections::Container<Item>* gatb::core::tools::storage::impl::StorageTools::loadContainer(gatb::core::tools::storage::impl::Group&, const string&) [with T = gatb::core::tools::math::LargeInt<4>]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<4>*, std::vector<gatb::core::tools::math::LargeInt<4>, std::allocator<gatb::core::tools::math::LargeInt<4> > > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<4>*, std::vector<gatb::core::tools::math::LargeInt<4>, std::allocator<gatb::core::tools::math::LargeInt<4> > > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<4>*, std::vector<gatb::core::tools::math::LargeInt<4>, std::allocator<gatb::core::tools::math::LargeInt<4> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<4>*, std::vector<gatb::core::tools::math::LargeInt<4>, std::allocator<gatb::core::tools::math::LargeInt<4> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 28%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/MPHF.hpp:33,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile<Item>::fill(std::vector<Item>&, size_t)':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type]
}
^
[ 32%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o
[ 35%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.hpp:31,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:20:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile<Item>::fill(std::vector<Item>&, size_t)':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type]
}
^
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.hpp:25,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:20:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<4>*, std::vector<gatb::core::tools::math::LargeInt<4>, std::allocator<gatb::core::tools::math::LargeInt<4> > > >; _Distance = int; _Tp = gatb::core::tools::math::LargeInt<4>; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<4>*, std::vector<gatb::core::tools::math::LargeInt<4>, std::allocator<gatb::core::tools::math::LargeInt<4> > > >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >; _Distance = int; _Tp = gatb::core::tools::math::LargeInt<3>; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >; _Distance = int; _Tp = gatb::core::tools::math::LargeInt<2>; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >' changed in GCC 7.1
In file included from /usr/include/c++/8/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.hpp:25,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:20:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<4>*, std::vector<gatb::core::tools::math::LargeInt<4>, std::allocator<gatb::core::tools::math::LargeInt<4> > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<4>*, std::vector<gatb::core::tools::math::LargeInt<4>, std::allocator<gatb::core::tools::math::LargeInt<4> > > >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<4>*, std::vector<gatb::core::tools::math::LargeInt<4>, std::allocator<gatb::core::tools::math::LargeInt<4> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1>, std::allocator<gatb::core::tools::math::LargeInt<1> > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1>, std::allocator<gatb::core::tools::math::LargeInt<1> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1>, std::allocator<gatb::core::tools::math::LargeInt<1> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >' changed in GCC 7.1
__heap_select(_RandomAccessIterator __first,
^~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >' changed in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >' changed in GCC 7.1
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.hpp:25,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:20:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1>, std::allocator<gatb::core::tools::math::LargeInt<1> > > >; _Distance = int; _Tp = gatb::core::tools::math::LargeInt<1>; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1>, std::allocator<gatb::core::tools::math::LargeInt<1> > > >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /usr/include/boost/move/algorithm.hpp:32,
from /usr/include/boost/move/move.hpp:32,
from /usr/include/boost/variant/detail/move.hpp:28,
from /usr/include/boost/variant/detail/initializer.hpp:23,
from /usr/include/boost/variant/variant.hpp:30,
from /usr/include/boost/variant.hpp:17,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.hpp:25,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:20:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1>, std::allocator<gatb::core::tools::math::LargeInt<1> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1>, std::allocator<gatb::core::tools::math::LargeInt<1> > > >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1>, std::allocator<gatb::core::tools::math::LargeInt<1> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1>, std::allocator<gatb::core::tools::math::LargeInt<1> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1>, std::allocator<gatb::core::tools::math::LargeInt<1> > > >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In member function 'void gatb::core::kmer::impl::PartitionsByVectorCommand<span>::execute() [with unsigned int span = 32]':
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1>, std::allocator<gatb::core::tools::math::LargeInt<1> > > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1>, std::allocator<gatb::core::tools::math::LargeInt<1> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<1>*, std::vector<gatb::core::tools::math::LargeInt<1>, std::allocator<gatb::core::tools::math::LargeInt<1> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >' changed in GCC 7.1
std::__heap_select(__first, __middle, __last, __comp);
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In member function 'void gatb::core::kmer::impl::PartitionsByVectorCommand<span>::execute() [with unsigned int span = 64]':
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<2>*, std::vector<gatb::core::tools::math::LargeInt<2>, std::allocator<gatb::core::tools::math::LargeInt<2> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In member function 'void gatb::core::kmer::impl::PartitionsByVectorCommand<span>::execute() [with unsigned int span = 96]':
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<3>*, std::vector<gatb::core::tools::math::LargeInt<3>, std::allocator<gatb::core::tools::math::LargeInt<3> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<4>*, std::vector<gatb::core::tools::math::LargeInt<4>, std::allocator<gatb::core::tools::math::LargeInt<4> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<4>*, std::vector<gatb::core::tools::math::LargeInt<4>, std::allocator<gatb::core::tools::math::LargeInt<4> > > >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<4>*, std::vector<gatb::core::tools::math::LargeInt<4>, std::allocator<gatb::core::tools::math::LargeInt<4> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<4>*, std::vector<gatb::core::tools::math::LargeInt<4>, std::allocator<gatb::core::tools::math::LargeInt<4> > > >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In member function 'void gatb::core::kmer::impl::PartitionsByVectorCommand<span>::execute() [with unsigned int span = 128]':
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<4>*, std::vector<gatb::core::tools::math::LargeInt<4>, std::allocator<gatb::core::tools::math::LargeInt<4> > > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<4>*, std::vector<gatb::core::tools::math::LargeInt<4>, std::allocator<gatb::core::tools::math::LargeInt<4> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<gatb::core::tools::math::LargeInt<4>*, std::vector<gatb::core::tools::math::LargeInt<4>, std::allocator<gatb::core::tools::math::LargeInt<4> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 35%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile<Item>::fill(std::vector<Item>&, size_t)':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type]
}
^
[ 39%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp.o
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp:1:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile<Item>::fill(std::vector<Item>&, size_t)':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type]
}
^
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp:1:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<1>]':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
vasprintf (&buffer, fmt, args);
~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt64]':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::misc::IHistogram::Entry]':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<32>::Count]':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:26,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp:1:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function 'static std::__cxx11::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
vasprintf (&buffer, fmt, args);
~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 39%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp.o
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp:1:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile<Item>::fill(std::vector<Item>&, size_t)':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type]
}
^
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp:1:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<2>]':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
vasprintf (&buffer, fmt, args);
~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt64]':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::misc::IHistogram::Entry]':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<64>::Count]':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:26,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp:1:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function 'static std::__cxx11::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
vasprintf (&buffer, fmt, args);
~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 42%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp.o
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp:1:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile<Item>::fill(std::vector<Item>&, size_t)':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type]
}
^
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp:1:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<3>]':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
vasprintf (&buffer, fmt, args);
~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt64]':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::misc::IHistogram::Entry]':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<96>::Count]':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:26,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp:1:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function 'static std::__cxx11::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
vasprintf (&buffer, fmt, args);
~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 42%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp.o
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp:1:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile<Item>::fill(std::vector<Item>&, size_t)':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type]
}
^
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp:1:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<4>]':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
vasprintf (&buffer, fmt, args);
~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt64]':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::misc::IHistogram::Entry]':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<128>::Count]':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:26,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp:1:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function 'static std::__cxx11::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
vasprintf (&buffer, fmt, args);
~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 46%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/FileSystemCommon.hpp:32,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/FileSystemCommon.cpp:20:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp: In constructor 'gatb::core::system::ExceptionErrno::ExceptionErrno(const char*, ...)':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:24: warning: ignoring return value of 'char* strerror_r(int, char*, size_t)', declared with attribute warn_unused_result [-Wunused-result]
strerror_r (errno, buffer, BUFSIZ);
~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
[ 46%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o
[ 50%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o
[ 50%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o
[ 53%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o
[ 53%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o
[ 57%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadMacos.cpp.o
[ 57%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o
[ 60%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Command.cpp.o
[ 60%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Observer.cpp.o
[ 64%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Algorithm.cpp.o
[ 64%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Histogram.cpp.o
[ 67%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/OptionsParser.cpp.o
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/OptionsParser.cpp:23:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function 'static std::__cxx11::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
vasprintf (&buffer, fmt, args);
~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 67%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Progress.cpp.o
[ 71%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Property.cpp.o
[ 75%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/TimeInfo.cpp.o
[ 75%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tokenizer.cpp.o
[ 78%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tool.cpp.o
[ 78%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/XmlReader.cpp.o
[ 82%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/Storage.cpp.o
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.cpp:22:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile<Item>::fill(std::vector<Item>&, size_t)':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type]
}
^
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.cpp:22:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt8]':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
vasprintf (&buffer, fmt, args);
~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 82%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o
[ 85%] Linking CXX static library ../lib/libgatbcore.a
make[4]: Leaving directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build'
[ 85%] Built target gatbcore-static
make[4]: Entering directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build'
Scanning dependencies of target mapsembler2_extremities
make[4]: Leaving directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build'
make[4]: Entering directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build'
[ 89%] Building CXX object CMakeFiles/mapsembler2_extremities.dir/src/main.cpp.o
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/gatb_core.hpp:42,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/src/mapsembler2_extremities.hpp:23,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/src/main.cpp:20:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile<Item>::fill(std::vector<Item>&, size_t)':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type]
}
^
[ 89%] Building CXX object CMakeFiles/mapsembler2_extremities.dir/src/mapsembler2_extremities.cpp.o
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/gatb_core.hpp:42,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/src/mapsembler2_extremities.hpp:23,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/src/mapsembler2_extremities.cpp:13:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile<Item>::fill(std::vector<Item>&, size_t)':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type]
}
^
[ 92%] Linking CXX executable mapsembler2_extremities
make[4]: Leaving directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build'
[ 92%] Built target mapsembler2_extremities
make[4]: Entering directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build'
Scanning dependencies of target dbginfo
make[4]: Leaving directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build'
make[4]: Entering directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build'
[ 96%] Building CXX object ext/gatb-core/tools/CMakeFiles/dbginfo.dir/dbginfo.cpp.o
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/gatb_core.hpp:42,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/tools/dbginfo.cpp:20:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile<Item>::fill(std::vector<Item>&, size_t)':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type]
}
^
[ 96%] Linking CXX executable ../bin/dbginfo
make[4]: Leaving directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build'
[ 96%] Built target dbginfo
make[4]: Entering directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build'
Scanning dependencies of target dbgh5
make[4]: Leaving directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build'
make[4]: Entering directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build'
[100%] Building CXX object ext/gatb-core/tools/CMakeFiles/dbgh5.dir/dbgh5.cpp.o
In file included from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/gatb_core.hpp:42,
from /<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/tools/dbgh5.cpp:20:
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile<Item>::fill(std::vector<Item>&, size_t)':
/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type]
}
^
[100%] Linking CXX executable ../bin/dbgh5
make[4]: Leaving directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build'
[100%] Built target dbgh5
make[4]: Entering directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build'
Scanning dependencies of target emphf_copyasis
make[4]: Leaving directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build'
make[4]: Entering directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build'
make[4]: Leaving directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build'
[100%] Built target emphf_copyasis
make[3]: Leaving directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build'
make[2]: Leaving directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build'
cd mapsembler2_extend && make k=29
make[2]: Entering directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extend'
g++ -o ../minia/Pool.o -c ../minia/Pool.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial
g++ -o ../minia/Bank.o -c ../minia/Bank.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial
../minia/Bank.cpp: In member function 'void Bank::init(char**, int)':
../minia/Bank.cpp:282:19: warning: ignoring return value of 'char* strerror_r(int, char*, size_t)', declared with attribute warn_unused_result [-Wunused-result]
strerror_r( errno, buffer, BUFSIZ ); // get string message from errno
~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
../minia/Bank.cpp: In member function 'void BinaryBank::open(bool)':
../minia/Bank.cpp:713:19: warning: ignoring return value of 'char* strerror_r(int, char*, size_t)', declared with attribute warn_unused_result [-Wunused-result]
strerror_r( errno, buffer, BUFSIZ ); // get string message from errno
~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
../minia/Bank.cpp: In member function 'void BinaryReads::open(bool)':
../minia/Bank.cpp:798:19: warning: ignoring return value of 'char* strerror_r(int, char*, size_t)', declared with attribute warn_unused_result [-Wunused-result]
strerror_r( errno, buffer, BUFSIZ ); // get string message from errno
~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
../minia/Bank.cpp: In member function 'int KmersBuffer::readkmers()':
../minia/Bank.cpp:988:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(buffer,sizeof( char),block_size, binary_read_file); // read a block of sequences into the buffer
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -o ../minia/Bloom.o -c ../minia/Bloom.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial
../minia/Bloom.cpp: In member function 'void Bloom::load(char*)':
../minia/Bloom.cpp:257:7: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(blooma, sizeof(unsigned char), nchar, file_data);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -o ../minia/Hash16.o -c ../minia/Hash16.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial
g++ -o ../minia/Terminator.o -c ../minia/Terminator.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial
../minia/Terminator.cpp: In constructor 'BranchingTerminator::BranchingTerminator(BinaryBank*, BinaryBank*, Bloom*, Set*)':
../minia/Terminator.cpp:337:25: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'unsigned int' [-Wformat=]
fprintf (stderr,"\nLoaded %lld branching kmers x %lu B = %.1f MB\n",nb_branching_kmers,sizeof(cell<kmer_type>),((1<<NBITS_TERMINATOR)*sizeof(cell<kmer_type>)*1.0)/1024.0/1024.0);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -o ../minia/Kmer.o -c ../minia/Kmer.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial
g++ -o ../minia/Traversal.o -c ../minia/Traversal.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial
../minia/Traversal.cpp: In member function 'bool MonumentTraversal::find_starting_kmer(kmer_type, kmer_type&)':
../minia/Traversal.cpp:352:43: warning: format '%lu' expects argument of type 'long unsigned int', but argument 5 has type 'std::set<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
if (debug) printf("depth %d useless int %d and starting belongs %d nb involved nodes %lu\n",frontline.depth,useless_int,all_involved_extensions.find(starting_kmer) != all_involved_extensions.end(),all_involved_extensions.size());
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../minia/Traversal.cpp: In member function 'bool MonumentTraversal::validate_consensuses(std::set<std::__cxx11::basic_string<char> >, char*, int&)':
../minia/Traversal.cpp:820:28: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'std::__cxx11::basic_string<char>::size_type' {aka 'unsigned int'} [-Wformat=]
if (debug) printf("bubble path %d: %s (len=%lu)\n",path_number,(*it).c_str(),(*it).length());
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~
../minia/Traversal.cpp:841:23: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::set<std::__cxx11::basic_string<char> >::size_type' {aka 'unsigned int'} [-Wformat=]
if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/deque:66,
from /usr/include/c++/8/queue:60,
from ../minia/Traversal.h:5,
from ../minia/Traversal.cpp:3:
/usr/include/c++/8/bits/deque.tcc: In function 'std::_Deque_iterator<_Tp, _Tp&, _Tp*> std::copy(std::_Deque_iterator<_Tp, const _Tp&, const _Tp*>, std::_Deque_iterator<_Tp, const _Tp&, const _Tp*>, std::_Deque_iterator<_Tp, _Tp&, _Tp*>) [with _Tp = kmer_strand_nt]':
/usr/include/c++/8/bits/deque.tcc:986:5: note: parameter passing for argument of type 'std::_Deque_iterator<kmer_strand_nt, const kmer_strand_nt&, const kmer_strand_nt*>' changed in GCC 7.1
copy(_Deque_iterator<_Tp, const _Tp&, const _Tp*> __first,
^~~~
/usr/include/c++/8/bits/deque.tcc:986:5: note: parameter passing for argument of type 'std::_Deque_iterator<kmer_strand_nt, const kmer_strand_nt&, const kmer_strand_nt*>' changed in GCC 7.1
/usr/include/c++/8/bits/deque.tcc: In member function 'void std::deque<_Tp, _Alloc>::_M_insert_aux(std::deque<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::deque<_Tp, _Alloc>::size_type) [with _ForwardIterator = std::_Deque_iterator<kmer_strand_nt, const kmer_strand_nt&, const kmer_strand_nt*>; _Tp = kmer_strand_nt; _Alloc = std::allocator<kmer_strand_nt>]':
/usr/include/c++/8/bits/deque.tcc:758:7: note: parameter passing for argument of type 'std::_Deque_iterator<kmer_strand_nt, const kmer_strand_nt&, const kmer_strand_nt*>' changed in GCC 7.1
deque<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/deque.tcc:758:7: note: parameter passing for argument of type 'std::_Deque_iterator<kmer_strand_nt, const kmer_strand_nt&, const kmer_strand_nt*>' changed in GCC 7.1
/usr/include/c++/8/bits/deque.tcc:781:7: note: parameter passing for argument of type 'std::_Deque_iterator<kmer_strand_nt, const kmer_strand_nt&, const kmer_strand_nt*>' changed in GCC 7.1
std::copy(__first, __last, __pos - difference_type(__n));
^~~
/usr/include/c++/8/bits/deque.tcc:781:7: note: parameter passing for argument of type 'std::_Deque_iterator<kmer_strand_nt, const kmer_strand_nt&, const kmer_strand_nt*>' changed in GCC 7.1
/usr/include/c++/8/bits/deque.tcc:781:7: note: parameter passing for argument of type 'std::_Deque_iterator<kmer_strand_nt, const kmer_strand_nt&, const kmer_strand_nt*>' changed in GCC 7.1
/usr/include/c++/8/bits/deque.tcc:792:7: note: parameter passing for argument of type 'std::_Deque_iterator<kmer_strand_nt, const kmer_strand_nt&, const kmer_strand_nt*>' changed in GCC 7.1
std::copy(__mid, __last, __old_start);
^~~
/usr/include/c++/8/bits/deque.tcc:792:7: note: parameter passing for argument of type 'std::_Deque_iterator<kmer_strand_nt, const kmer_strand_nt&, const kmer_strand_nt*>' changed in GCC 7.1
/usr/include/c++/8/bits/deque.tcc:792:7: note: parameter passing for argument of type 'std::_Deque_iterator<kmer_strand_nt, const kmer_strand_nt&, const kmer_strand_nt*>' changed in GCC 7.1
/usr/include/c++/8/bits/deque.tcc:821:5: note: parameter passing for argument of type 'std::_Deque_iterator<kmer_strand_nt, const kmer_strand_nt&, const kmer_strand_nt*>' changed in GCC 7.1
std::copy(__first, __last, __pos);
^~~
/usr/include/c++/8/bits/deque.tcc:821:5: note: parameter passing for argument of type 'std::_Deque_iterator<kmer_strand_nt, const kmer_strand_nt&, const kmer_strand_nt*>' changed in GCC 7.1
/usr/include/c++/8/bits/deque.tcc:821:5: note: parameter passing for argument of type 'std::_Deque_iterator<kmer_strand_nt, const kmer_strand_nt&, const kmer_strand_nt*>' changed in GCC 7.1
/usr/include/c++/8/bits/deque.tcc:832:5: note: parameter passing for argument of type 'std::_Deque_iterator<kmer_strand_nt, const kmer_strand_nt&, const kmer_strand_nt*>' changed in GCC 7.1
std::copy(__first, __mid, __pos);
^~~
/usr/include/c++/8/bits/deque.tcc:832:5: note: parameter passing for argument of type 'std::_Deque_iterator<kmer_strand_nt, const kmer_strand_nt&, const kmer_strand_nt*>' changed in GCC 7.1
/usr/include/c++/8/bits/deque.tcc:832:5: note: parameter passing for argument of type 'std::_Deque_iterator<kmer_strand_nt, const kmer_strand_nt&, const kmer_strand_nt*>' changed in GCC 7.1
/usr/include/c++/8/bits/deque.tcc: In member function 'std::deque<_Tp, _Alloc>& std::deque<_Tp, _Alloc>::operator=(const std::deque<_Tp, _Alloc>&) [with _Tp = kmer_strand_nt; _Alloc = std::allocator<kmer_strand_nt>]':
/usr/include/c++/8/bits/deque.tcc:117:6: note: parameter passing for argument of type 'std::_Deque_iterator<kmer_strand_nt, const kmer_strand_nt&, const kmer_strand_nt*>' changed in GCC 7.1
_M_erase_at_end(std::copy(__x.begin(), __x.end(),
^~~~~~~~~~~~~~~
/usr/include/c++/8/bits/deque.tcc:117:6: note: parameter passing for argument of type 'std::_Deque_iterator<kmer_strand_nt, const kmer_strand_nt&, const kmer_strand_nt*>' changed in GCC 7.1
/usr/include/c++/8/bits/deque.tcc:117:6: note: parameter passing for argument of type 'std::_Deque_iterator<kmer_strand_nt, const kmer_strand_nt&, const kmer_strand_nt*>' changed in GCC 7.1
/usr/include/c++/8/bits/deque.tcc:122:8: note: parameter passing for argument of type 'std::_Deque_iterator<kmer_strand_nt, const kmer_strand_nt&, const kmer_strand_nt*>' changed in GCC 7.1
std::copy(__x.begin(), __mid, this->_M_impl._M_start);
^~~
/usr/include/c++/8/bits/deque.tcc:122:8: note: parameter passing for argument of type 'std::_Deque_iterator<kmer_strand_nt, const kmer_strand_nt&, const kmer_strand_nt*>' changed in GCC 7.1
/usr/include/c++/8/bits/deque.tcc:122:8: note: parameter passing for argument of type 'std::deque<kmer_strand_nt, std::allocator<kmer_strand_nt> >::const_iterator' {aka 'std::_Deque_iterator<kmer_strand_nt, const kmer_strand_nt&, const kmer_strand_nt*>'} changed in GCC 7.1
g++ -o ../minia/LinearCounter.o -c ../minia/LinearCounter.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial
g++ -o ../minia/Set.o -c ../minia/Set.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial
../minia/Set.cpp: In member function 'void AssocSet::print_total_size()':
../minia/Set.cpp:132:12: warning: format '%li' expects argument of type 'long int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
printf("Assoc set size: %li\n",liste.size());
^~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~
../minia/Set.cpp:133:12: warning: format '%li' expects argument of type 'long int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
printf("Assoc set capacity: listekmer %li liste val%li\n",liste.capacity(),liste_value.capacity());
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~
../minia/Set.cpp:133:12: warning: format '%li' expects argument of type 'long int', but argument 3 has type 'std::vector<short unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
../minia/Set.cpp:134:12: warning: format '%li' expects argument of type 'long int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
printf("%li *%li + %li* %li = %li MB \n",liste.capacity(),sizeof(set_elem),liste_value.capacity(),sizeof(set_value_t),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~
../minia/Set.cpp:134:12: warning: format '%li' expects argument of type 'long int', but argument 3 has type 'unsigned int' [-Wformat=]
../minia/Set.cpp:134:12: warning: format '%li' expects argument of type 'long int', but argument 4 has type 'std::vector<short unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
../minia/Set.cpp:134:12: warning: format '%li' expects argument of type 'long int', but argument 5 has type 'unsigned int' [-Wformat=]
../minia/Set.cpp:134:12: warning: format '%li' expects argument of type 'long int', but argument 6 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
../minia/Set.cpp: In member function 'void AssocPairedSet::print()':
../minia/Set.cpp:242:12: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
printf("print %lu elems \n",liste.size());
^~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~
../minia/Set.cpp: In member function 'void AssocPairedSet::print_total_size()':
../minia/Set.cpp:298:12: warning: format '%li' expects argument of type 'long int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
printf("Assoc paired set size: %li\n",liste.size());
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~
../minia/Set.cpp:299:12: warning: format '%li' expects argument of type 'long int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
printf("Assoc paired set capacity: listekmer %li liste val%li\n",liste.capacity(),liste_value.capacity());
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~
../minia/Set.cpp:299:12: warning: format '%li' expects argument of type 'long int', but argument 3 has type 'std::vector<pair_nt_kmer>::size_type' {aka 'unsigned int'} [-Wformat=]
../minia/Set.cpp:300:12: warning: format '%li' expects argument of type 'long int', but argument 2 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
printf("%li *%li + %li* %li = %li MB \n",liste.capacity(),sizeof(set_elem),liste_value.capacity(),sizeof(set_value_t),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~
../minia/Set.cpp:300:12: warning: format '%li' expects argument of type 'long int', but argument 3 has type 'unsigned int' [-Wformat=]
../minia/Set.cpp:300:12: warning: format '%li' expects argument of type 'long int', but argument 4 has type 'std::vector<pair_nt_kmer>::size_type' {aka 'unsigned int'} [-Wformat=]
../minia/Set.cpp:300:12: warning: format '%li' expects argument of type 'long int', but argument 5 has type 'unsigned int' [-Wformat=]
../minia/Set.cpp:300:12: warning: format '%li' expects argument of type 'long int', but argument 6 has type 'std::vector<long long unsigned int>::size_type' {aka 'unsigned int'} [-Wformat=]
../minia/Set.cpp: In member function 'void AssocPairedSet::load(char*)':
../minia/Set.cpp:290:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&liste_value[0], sizeof(pair_nt_kmer_t), liste_value.size(), file_data);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from ../minia/Set.h:10,
from ../minia/Set.cpp:1:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from ../minia/Set.h:10,
from ../minia/Set.cpp:1:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void AssocPairedSet::load_branching(BinaryBank*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In member function 'virtual void ListSet::insert(set_elem)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from ../minia/Pool.h:11,
from ../minia/Hash16.h:12,
from ../minia/Set.h:6,
from ../minia/Set.cpp:1:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1880:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
__final_insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1880:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from ../minia/Pool.h:11,
from ../minia/Hash16.h:12,
from ../minia/Set.h:6,
from ../minia/Set.cpp:1:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from ../minia/Pool.h:11,
from ../minia/Hash16.h:12,
from ../minia/Set.h:6,
from ../minia/Set.cpp:1:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In member function 'virtual void AssocPairedSet::finalize()':
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1971:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
std::__final_insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In member function 'virtual void ListSet::finalize()':
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1971:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
std::__final_insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In member function 'virtual void AssocSet::finalize()':
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1971:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
std::__final_insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
g++ -o ../minia/Utils.o -c ../minia/Utils.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial
../minia/Utils.cpp: In function 'void end_kmer_count_partition(bool, Hash16*)':
../minia/Utils.cpp:187:14: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result]
ftruncate(fileno(F_kmercpt_write), 0); //erase previous file
~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../minia/Utils.cpp:199:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cptk, sizeof(cptk), 1, F_kmercpt_read);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../minia/Utils.cpp:225:18: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result]
ftruncate(fileno(F_kmercpt_read), 0); //erase previous file
~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../minia/Utils.cpp: In function 'char* return_file_name(const char*)':
../minia/Utils.cpp:28:26: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=]
sprintf(fileName,"%s.%s",prefix,suffix);
^~~~~~~
In file included from /usr/include/stdio.h:873,
from ../minia/Utils.h:1,
from ../minia/Utils.cpp:1:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 1025) into a destination of size 1024
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -o ../minia/SortingCount.o -c ../minia/SortingCount.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial
../minia/SortingCount.cpp: In function 'void sorting_count(Bank*, char*, int, int, bool, int, bool)':
../minia/SortingCount.cpp:56:15: warning: ignoring return value of 'char* getcwd(char*, size_t)', declared with attribute warn_unused_result [-Wunused-result]
getcwd(current_path,sizeof(current_path));
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../minia/SortingCount.cpp:283:15: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result]
system("echo 3 > /proc/sys/vm/drop_caches");
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../minia/SortingCount.cpp:537:19: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result]
system("echo 3 > /proc/sys/vm/drop_caches");
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from ../minia/SortingCount.h:8,
from ../minia/SortingCount.cpp:1:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from ../minia/Utils.h:9,
from ../minia/SortingCount.h:17,
from ../minia/SortingCount.cpp:1:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from ../minia/Utils.h:9,
from ../minia/SortingCount.h:17,
from ../minia/SortingCount.cpp:1:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from ../minia/Utils.h:9,
from ../minia/SortingCount.h:17,
from ../minia/SortingCount.cpp:1:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../minia/SortingCount.cpp: In function 'void sorting_count(Bank*, char*, int, int, bool, int, bool)':
../minia/SortingCount.cpp:45:24: warning: '%s' directive writing up to 1023 bytes into a region of size 512 [-Wformat-overflow=]
sprintf(p_buf, "%s/%s", temp_dir, ep->d_name);
^~~~~~~ ~~~~~~~~
In file included from /usr/include/stdio.h:873,
from ../minia/SortingCount.h:1,
from ../minia/SortingCount.cpp:1:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 2 and 1280 bytes into a destination of size 512
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from ../minia/SortingCount.h:8,
from ../minia/SortingCount.cpp:1:
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from ../minia/Utils.h:9,
from ../minia/SortingCount.h:17,
from ../minia/SortingCount.cpp:1:
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
../minia/SortingCount.cpp:844:1: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
}
^
g++ -o ../minia/Debloom.o -c ../minia/Debloom.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial
../minia/Debloom.cpp: In function 'void end_debloom_partition(bool)':
../minia/Debloom.cpp:29:11: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result]
ftruncate(fileno(F_debloom_write), 0); //erase previous file
~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -o ../minia/OAHash.o -c ../minia/OAHash.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial
g++ -o commons.o -c commons.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial
g++ -o IterativeExtensions.o -c IterativeExtensions.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial
In file included from /usr/include/c++/8/vector:69,
from ../minia/Set.h:10,
from ../minia/Terminator.h:13,
from IterativeExtensions.h:42,
from IterativeExtensions.cpp:38:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const kmer_strand_depth&}; _Tp = kmer_strand_depth; _Alloc = std::allocator<kmer_strand_depth>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<kmer_strand_depth>::iterator' {aka '__gnu_cxx::__normal_iterator<kmer_strand_depth*, std::vector<kmer_strand_depth> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {kmer_strand_depth}; _Tp = kmer_strand_depth; _Alloc = std::allocator<kmer_strand_depth>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<kmer_strand_depth>::iterator' {aka '__gnu_cxx::__normal_iterator<kmer_strand_depth*, std::vector<kmer_strand_depth> >'} changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {kmer_strand_depth}; _Tp = kmer_strand_depth; _Alloc = std::allocator<kmer_strand_depth>]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<kmer_strand_depth*, std::vector<kmer_strand_depth> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from ../minia/Set.h:10,
from ../minia/Terminator.h:13,
from IterativeExtensions.h:42,
from IterativeExtensions.cpp:38:
/usr/include/c++/8/bits/stl_vector.h: In static member function 'static void IterativeExtensions::construct_linear_seqs(std::__cxx11::string, std::__cxx11::string, int, std::__cxx11::string, int, int, parcours_t, bool)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<kmer_strand_depth*, std::vector<kmer_strand_depth> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In static member function 'static void IterativeExtensions::construct_linear_seqs_paired(std::__cxx11::string, std::__cxx11::string, int, std::__cxx11::string, int, int)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<kmer_strand_depth*, std::vector<kmer_strand_depth> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
g++ -o Fragment_Bank.o -c Fragment_Bank.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial
g++ -o Fragment.o -c Fragment.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial
g++ -o GraphOutput.o -c GraphOutput.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial
GraphOutput.cpp: In member function 'void GraphOutput::print_starter_head(int, char*)':
GraphOutput.cpp:145:31: warning: format '%ld' expects argument of type 'long int', but argument 6 has type 'size_t' {aka 'unsigned int'} [-Wformat=]
fprintf(starters_file,"\"Starter_%d\":{\"data\":{\"id\":\"S%d\", \"sequence\":\"%s\", \"length\":%ld,\n", index,index, sequence, strlen(sequence));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~
GraphOutput.cpp: In member function 'void GraphOutput::print_node(long int, char*)':
GraphOutput.cpp:204:32: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'size_t' {aka 'unsigned int'} [-Wformat=]
fprintf(nodes_file," { \"data\": { \"id\":\"n%ld\", \"sequence\":\"%s\", \"length\":%ld}}\n",index,ascii_node, strlen(ascii_node));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~
g++ -o mapsembler_extend ../minia/Pool.o ../minia/Bank.o ../minia/Bloom.o ../minia/Hash16.o ../minia/Terminator.o ../minia/Kmer.o ../minia/Traversal.o ../minia/LinearCounter.o ../minia/Set.o ../minia/Utils.o ../minia/SortingCount.o ../minia/Debloom.o ../minia/OAHash.o commons.o IterativeExtensions.o Fragment_Bank.o Fragment.o GraphOutput.o mapsembler_extend.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial
mapsembler_extend.cpp: In function 'int main(int, char**)':
mapsembler_extend.cpp:260:21: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'unsigned int' [-Wformat=]
fprintf (stderr,"taille cell %lu \n", sizeof(cell<kmer_type>));
^~~~~~~~~~~~~~~~~~~~
mapsembler_extend.cpp:320:76: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result]
command = string("rm -f ")+string(prefix_trashable)+string("*"); system((char *)command.c_str());
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
make[2]: Leaving directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/mapsembler2_extend'
cd kissreads_graph && make k=29
make[2]: Entering directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/kissreads_graph'
g++ -o block_allocator.o -c block_allocator.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64
g++ -o DeBruijnGraph.o -c DeBruijnGraph.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64
DeBruijnGraph.cpp: In member function 'int DBG::output_graph(FILE*, int, int&, bool, bool)':
DeBruijnGraph.cpp:405:21: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=]
fprintf(out,", \"length\": %lu", strlen(all_nodes[i]->fragment->fragment_sequence));
^~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -o Fragment.o -c Fragment.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64
g++ -o json.o -c json.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64
g++ -o read_coherence_mapsembler/libchash.o -c read_coherence_mapsembler/libchash.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64
read_coherence_mapsembler/libchash.cpp: In function 'HTItem* HashFind(HashTable*, u_long)':
read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&_ul, sizeof(_ul), 1, (fp)); \
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
read_coherence_mapsembler/libchash.cpp:226:7: note: in expansion of macro 'READ_UL'
READ_UL((ht)->fpData, cchData); \
^~~~~~~
read_coherence_mapsembler/libchash.cpp:1227:3: note: in expansion of macro 'LOAD_AND_RETURN'
LOAD_AND_RETURN(ht, Find(ht, KEY_TRUNC(ht, key), NULL));
^~~~~~~~~~~~~~~
read_coherence_mapsembler/libchash.cpp: In function 'HTItem* HashFindLast(HashTable*)':
read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&_ul, sizeof(_ul), 1, (fp)); \
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
read_coherence_mapsembler/libchash.cpp:226:7: note: in expansion of macro 'READ_UL'
READ_UL((ht)->fpData, cchData); \
^~~~~~~
read_coherence_mapsembler/libchash.cpp:1232:4: note: in expansion of macro 'LOAD_AND_RETURN'
LOAD_AND_RETURN(ht, ht->posLastFind);
^~~~~~~~~~~~~~~
read_coherence_mapsembler/libchash.cpp: In function 'HTItem* HashFirstBucket(HashTable*)':
read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&_ul, sizeof(_ul), 1, (fp)); \
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
read_coherence_mapsembler/libchash.cpp:226:7: note: in expansion of macro 'READ_UL'
READ_UL((ht)->fpData, cchData); \
^~~~~~~
read_coherence_mapsembler/libchash.cpp:1296:3: note: in expansion of macro 'LOAD_AND_RETURN'
LOAD_AND_RETURN(ht, retval);
^~~~~~~~~~~~~~~
read_coherence_mapsembler/libchash.cpp: In function 'HTItem* HashNextBucket(HashTable*)':
read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&_ul, sizeof(_ul), 1, (fp)); \
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
read_coherence_mapsembler/libchash.cpp:226:7: note: in expansion of macro 'READ_UL'
READ_UL((ht)->fpData, cchData); \
^~~~~~~
read_coherence_mapsembler/libchash.cpp:1306:3: note: in expansion of macro 'LOAD_AND_RETURN'
LOAD_AND_RETURN(ht, retval);
^~~~~~~~~~~~~~~
read_coherence_mapsembler/libchash.cpp: In function 'HashTable* HashDoLoad(FILE*, char* (*)(FILE*, int), HashTable*)':
read_coherence_mapsembler/libchash.cpp:1413:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(szMagicKey, 1, 4, fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~
read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&_ul, sizeof(_ul), 1, (fp)); \
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
read_coherence_mapsembler/libchash.cpp:1422:4: note: in expansion of macro 'READ_UL'
READ_UL(fp, ht->cchKey);
^~~~~~~
read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&_ul, sizeof(_ul), 1, (fp)); \
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
read_coherence_mapsembler/libchash.cpp:1423:4: note: in expansion of macro 'READ_UL'
READ_UL(fp, ht->cItems);
^~~~~~~
read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&_ul, sizeof(_ul), 1, (fp)); \
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
read_coherence_mapsembler/libchash.cpp:1424:4: note: in expansion of macro 'READ_UL'
READ_UL(fp, ht->cDeletedItems);
^~~~~~~
read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&_ul, sizeof(_ul), 1, (fp)); \
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
read_coherence_mapsembler/libchash.cpp:1427:4: note: in expansion of macro 'READ_UL'
READ_UL(fp, cchKey);
^~~~~~~
read_coherence_mapsembler/libchash.cpp:1429:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(rgchKeys, 1, cchKey, fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&_ul, sizeof(_ul), 1, (fp)); \
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
read_coherence_mapsembler/libchash.cpp:1434:7: note: in expansion of macro 'READ_UL'
READ_UL(fp, bck->data); /* all we need if dataRead is NULL */
^~~~~~~
read_coherence_mapsembler/libchash.cpp: In function 'u_long SparseRead(FILE*, SparseBin**)':
read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&_ul, sizeof(_ul), 1, (fp)); \
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
read_coherence_mapsembler/libchash.cpp:628:4: note: in expansion of macro 'READ_UL'
READ_UL(fp, cBuckets); /* actually, cBuckets is stored */
^~~~~~~
read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&_ul, sizeof(_ul), 1, (fp)); \
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
read_coherence_mapsembler/libchash.cpp:633:3: note: in expansion of macro 'READ_UL'
READ_UL(fp, (*pbinSparse)[i].bmOccupied[j]);
^~~~~~~
g++ -o read_coherence_mapsembler/couple.o -c read_coherence_mapsembler/couple.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64
g++ -o read_coherence_mapsembler/misc_tools.o -c read_coherence_mapsembler/misc_tools.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64
g++ -o read_coherence_mapsembler/read_groups.o -c read_coherence_mapsembler/read_groups.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64
g++ -o read_coherence_mapsembler/consensus_common.o -c read_coherence_mapsembler/consensus_common.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64
g++ -o read_coherence_mapsembler/list.o -c read_coherence_mapsembler/list.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64
g++ -o read_coherence_mapsembler/read_coherence.o -c read_coherence_mapsembler/read_coherence.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64
read_coherence_mapsembler/read_coherence.cpp: In function 'char** read_coherent_homologs(hash_t, const char*, int, int, int, int, int*)':
read_coherence_mapsembler/read_coherence.cpp:988:25: warning: format '%X' expects argument of type 'unsigned int', but argument 3 has type 'group_t' {aka 'list_*'} [-Wformat=]
"error group %X: recomputed number of substitutions (%d) not matching dynamic number of substitutions (%d) (so i'm glad i coded this test)\n fragment: %s\nconsensus:%s\n",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
current_read_group, number_substitutions,
~~~~~~~~~~~~~~~~~~
read_coherence_mapsembler/read_coherence.cpp:1002:25: warning: format '%X' expects argument of type 'unsigned int', but argument 3 has type 'group_t' {aka 'list_*'} [-Wformat=]
"error group %X: recomputed consensus (%s) not matching dynamic consensus (%s) (so i'm glad i coded this test)\n fragment: %s\n",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
current_read_group, substarters[*nb_consensuses],
~~~~~~~~~~~~~~~~~~
g++ -o read_coherence_mapsembler/interface_libchash.o -c read_coherence_mapsembler/interface_libchash.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64
g++ -o commons.o -c commons.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64
g++ -o Loader.o -c Loader.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64
Loader.cpp: In function 'void load_json_rec_global(json_value*, int)':
Loader.cpp:114:25: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'std::vector<Node_dbg*>::size_type' {aka 'unsigned int'} [-Wformat=]
printf("adding node %s = %ld\n", value->string_value, global_dbg->all_nodes.size());
^~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -o ReadMapper.o -c ReadMapper.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64
g++ -o kissreads_graph block_allocator.o DeBruijnGraph.o Fragment.o json.o read_coherence_mapsembler/libchash.o read_coherence_mapsembler/couple.o read_coherence_mapsembler/misc_tools.o read_coherence_mapsembler/read_groups.o read_coherence_mapsembler/consensus_common.o read_coherence_mapsembler/list.o read_coherence_mapsembler/read_coherence.o read_coherence_mapsembler/interface_libchash.o commons.o ../minia/Kmer.o ../minia/Bank.o Loader.o ReadMapper.o KissReadsGraph.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial
make[2]: Leaving directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/kissreads_graph'
cd kissreads && make k=29
make[2]: Entering directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/kissreads'
gcc -o src/coherent_algorithm.o -c src/coherent_algorithm.c -O3 -lz -fopenmp -DOMP -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/
gcc -o src/commons.o -c src/commons.c -O3 -lz -fopenmp -DOMP -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/
gcc -o src/couple.o -c src/couple.c -O3 -lz -fopenmp -DOMP -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/
gcc -o src/extension_algorithm.o -c src/extension_algorithm.c -O3 -lz -fopenmp -DOMP -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/
gcc -o src/fragment_index.o -c src/fragment_index.c -O3 -lz -fopenmp -DOMP -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/
gcc -o src/kissReads.o -c src/kissReads.c -O3 -lz -fopenmp -DOMP -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/
gcc -o src/list.o -c src/list.c -O3 -lz -fopenmp -DOMP -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/
gcc -o src/outputs.o -c src/outputs.c -O3 -lz -fopenmp -DOMP -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/
gcc -o src/interface_libchash.o -c src/interface_libchash.c -O3 -lz -fopenmp -DOMP -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/
gcc -o src/libchash.o -c src/libchash.c -O3 -lz -fopenmp -DOMP -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/
src/libchash.c: In function 'HashFind':
src/libchash.c:193:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
fread(&_ul, sizeof(_ul), 1, (fp)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
src/libchash.c:220:7: note: in expansion of macro 'READ_UL'
READ_UL((ht)->fpData, cchData); \
^~~~~~~
src/libchash.c:1221:4: note: in expansion of macro 'LOAD_AND_RETURN'
LOAD_AND_RETURN(ht, Find(ht, KEY_TRUNC(ht, key), NULL));
^~~~~~~~~~~~~~~
src/libchash.c: In function 'HashFindLast':
src/libchash.c:193:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
fread(&_ul, sizeof(_ul), 1, (fp)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
src/libchash.c:220:7: note: in expansion of macro 'READ_UL'
READ_UL((ht)->fpData, cchData); \
^~~~~~~
src/libchash.c:1226:4: note: in expansion of macro 'LOAD_AND_RETURN'
LOAD_AND_RETURN(ht, ht->posLastFind);
^~~~~~~~~~~~~~~
src/libchash.c: In function 'HashFirstBucket':
src/libchash.c:193:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
fread(&_ul, sizeof(_ul), 1, (fp)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
src/libchash.c:220:7: note: in expansion of macro 'READ_UL'
READ_UL((ht)->fpData, cchData); \
^~~~~~~
src/libchash.c:1290:3: note: in expansion of macro 'LOAD_AND_RETURN'
LOAD_AND_RETURN(ht, retval);
^~~~~~~~~~~~~~~
src/libchash.c: In function 'HashNextBucket':
src/libchash.c:193:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
fread(&_ul, sizeof(_ul), 1, (fp)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
src/libchash.c:220:7: note: in expansion of macro 'READ_UL'
READ_UL((ht)->fpData, cchData); \
^~~~~~~
src/libchash.c:1300:3: note: in expansion of macro 'LOAD_AND_RETURN'
LOAD_AND_RETURN(ht, retval);
^~~~~~~~~~~~~~~
src/libchash.c: In function 'HashDoLoad':
src/libchash.c:1407:4: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
fread(szMagicKey, 1, 4, fp);
^~~~~~~~~~~~~~~~~~~~~~~~~~~
src/libchash.c:193:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
fread(&_ul, sizeof(_ul), 1, (fp)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
src/libchash.c:1416:4: note: in expansion of macro 'READ_UL'
READ_UL(fp, ht->cchKey);
^~~~~~~
src/libchash.c:193:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
fread(&_ul, sizeof(_ul), 1, (fp)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
src/libchash.c:1417:4: note: in expansion of macro 'READ_UL'
READ_UL(fp, ht->cItems);
^~~~~~~
src/libchash.c:193:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
fread(&_ul, sizeof(_ul), 1, (fp)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
src/libchash.c:1418:4: note: in expansion of macro 'READ_UL'
READ_UL(fp, ht->cDeletedItems);
^~~~~~~
src/libchash.c:193:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
fread(&_ul, sizeof(_ul), 1, (fp)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
src/libchash.c:1421:4: note: in expansion of macro 'READ_UL'
READ_UL(fp, cchKey);
^~~~~~~
src/libchash.c:1423:4: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
fread(rgchKeys, 1, cchKey, fp);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
src/libchash.c:193:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
fread(&_ul, sizeof(_ul), 1, (fp)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
src/libchash.c:1428:7: note: in expansion of macro 'READ_UL'
READ_UL(fp, bck->data); /* all we need if dataRead is NULL */
^~~~~~~
src/libchash.c: In function 'SparseRead':
src/libchash.c:193:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
fread(&_ul, sizeof(_ul), 1, (fp)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
src/libchash.c:622:4: note: in expansion of macro 'READ_UL'
READ_UL(fp, cBuckets); /* actually, cBuckets is stored */
^~~~~~~
src/libchash.c:193:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
fread(&_ul, sizeof(_ul), 1, (fp)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
src/libchash.c:627:3: note: in expansion of macro 'READ_UL'
READ_UL(fp, (*pbinSparse)[i].bmOccupied[j]);
^~~~~~~
gcc -o kissreads src/coherent_algorithm.o src/commons.o src/couple.o src/extension_algorithm.o src/fragment_index.o src/kissReads.o src/list.o src/outputs.o src/interface_libchash.o src/libchash.o -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -lm -O3 -lz -lgomp
#################
# Compilation OK#
#################
make[2]: Leaving directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg/kissreads'
make[1]: Leaving directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg'
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch
dh_testroot -a
dh_prep -a
debian/rules override_dh_install
make[1]: Entering directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg'
mv ./kissreads/kissreads ./kissreads/mapsembler2_kissreads
mv ./kissreads_graph/kissreads_graph ./kissreads_graph/mapsembler2_kissreads_graph
cp run_mapsembler2_pipeline.sh run_mapsembler2_pipeline
dh_install
make[1]: Leaving directory '/<<BUILDDIR>>/mapsembler2-2.2.4+dfsg'
dh_installdocs -a
dh_installchangelogs -a
dh_installman -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: debian/mapsembler2/usr/bin/mapsembler2_extremities contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/mapsembler2/usr/bin/mapsembler2_kissreads_graph contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/mapsembler2/usr/bin/mapsembler_extend contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mapsembler2/usr/bin/mapsembler2_extremities was not linked against libdl.so.2 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mapsembler2/usr/bin/mapsembler2_extremities was not linked against libhdf5_serial.so.103 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mapsembler2/usr/bin/mapsembler2_kissreads debian/mapsembler2/usr/bin/mapsembler2_extremities debian/mapsembler2/usr/bin/mapsembler2_kissreads_graph debian/mapsembler2/usr/bin/mapsembler_extend were not linked against ld-linux-armhf.so.3 (they use none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'mapsembler2-dbgsym' in '../mapsembler2-dbgsym_2.2.4+dfsg-3+b1_armhf.deb'.
dpkg-deb: building package 'mapsembler2' in '../mapsembler2_2.2.4+dfsg-3+b1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../mapsembler2_2.2.4+dfsg-3+b1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2018-12-19T12:39:07Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
mapsembler2_2.2.4+dfsg-3+b1_armhf.changes:
------------------------------------------
Format: 1.8
Date: Sat, 03 Nov 2018 07:15:54 +0100
Source: mapsembler2 (2.2.4+dfsg-3)
Binary: mapsembler2
Binary-Only: yes
Architecture: armhf
Version: 2.2.4+dfsg-3+b1
Distribution: buster-staging
Urgency: low
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Description:
mapsembler2 - bioinformatics targeted assembly software
Changes:
mapsembler2 (2.2.4+dfsg-3+b1) buster-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
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Checksums-Sha256:
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320a85f8d508210d2cd6f1fa494d95da392973042fc2e1967cf303b8f2cb4971 6348 mapsembler2_2.2.4+dfsg-3+b1_armhf.buildinfo
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Files:
0326d51538a424930cde3b65c93df959 2786904 debug optional mapsembler2-dbgsym_2.2.4+dfsg-3+b1_armhf.deb
16aa66dae23f62fa6863b914b4283d76 6348 science optional mapsembler2_2.2.4+dfsg-3+b1_armhf.buildinfo
80175ed9f2dc231dbe61fd15a018c06f 191172 science optional mapsembler2_2.2.4+dfsg-3+b1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
mapsembler2-dbgsym_2.2.4+dfsg-3+b1_armhf.deb
--------------------------------------------
new Debian package, version 2.0.
size 2786904 bytes: control archive=724 bytes.
541 bytes, 12 lines control
424 bytes, 4 lines md5sums
Package: mapsembler2-dbgsym
Source: mapsembler2 (2.2.4+dfsg-3)
Version: 2.2.4+dfsg-3+b1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 2904
Depends: mapsembler2 (= 2.2.4+dfsg-3+b1)
Section: debug
Priority: optional
Description: debug symbols for mapsembler2
Build-Ids: 550a50f38c755b1bebe477f634ec631ed83334f0 b4997b70628d54ec3184ee2e7bb38d7d0d572bff cc5a8753973504f0369120f8c1575ccbbb43579b e7a585b5d5492154496631813dd83feab9793561
drwxr-xr-x root/root 0 2018-11-03 06:15 ./
drwxr-xr-x root/root 0 2018-11-03 06:15 ./usr/
drwxr-xr-x root/root 0 2018-11-03 06:15 ./usr/lib/
drwxr-xr-x root/root 0 2018-11-03 06:15 ./usr/lib/debug/
drwxr-xr-x root/root 0 2018-11-03 06:15 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2018-11-03 06:15 ./usr/lib/debug/.build-id/55/
-rw-r--r-- root/root 869820 2018-11-03 06:15 ./usr/lib/debug/.build-id/55/0a50f38c755b1bebe477f634ec631ed83334f0.debug
drwxr-xr-x root/root 0 2018-11-03 06:15 ./usr/lib/debug/.build-id/b4/
-rw-r--r-- root/root 1553476 2018-11-03 06:15 ./usr/lib/debug/.build-id/b4/997b70628d54ec3184ee2e7bb38d7d0d572bff.debug
drwxr-xr-x root/root 0 2018-11-03 06:15 ./usr/lib/debug/.build-id/cc/
-rw-r--r-- root/root 100176 2018-11-03 06:15 ./usr/lib/debug/.build-id/cc/5a8753973504f0369120f8c1575ccbbb43579b.debug
drwxr-xr-x root/root 0 2018-11-03 06:15 ./usr/lib/debug/.build-id/e7/
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drwxr-xr-x root/root 0 2018-11-03 06:15 ./usr/share/
drwxr-xr-x root/root 0 2018-11-03 06:15 ./usr/share/doc/
lrwxrwxrwx root/root 0 2018-11-03 06:15 ./usr/share/doc/mapsembler2-dbgsym -> mapsembler2
mapsembler2_2.2.4+dfsg-3+b1_armhf.deb
-------------------------------------
new Debian package, version 2.0.
size 191172 bytes: control archive=1456 bytes.
1445 bytes, 28 lines control
1044 bytes, 14 lines md5sums
Package: mapsembler2
Source: mapsembler2 (2.2.4+dfsg-3)
Version: 2.2.4+dfsg-3+b1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 568
Depends: libc6 (>= 2.27), libgcc1 (>= 1:3.5), libgomp1 (>= 4.9), libhdf5-103, libstdc++6 (>= 5.2), zlib1g (>= 1:1.2.3.4), bc
Section: science
Priority: optional
Homepage: http://colibread.inria.fr/mapsembler2/
Description: bioinformatics targeted assembly software
Mapsembler2 is a targeted assembly software.
It takes as input a set of NGS raw reads (fasta or fastq, gzipped or not)
and a set of input sequences (starters).
.
It first determines if each starter is read-coherent, e.g. whether reads
confirm the presence of each starter in the original sequence.
Then for each read-coherent starter, Mapsembler2 outputs its sequence
neighborhood as a linear sequence or as a graph, depending on the user choice.
.
Mapsembler2 may be used for (not limited to):
- Validate an assembled sequence (input as starter), e.g. from a de
Bruijn graph assembly where read-coherence was not enforced.
- Checks if a gene (input as starter) has an homolog in a set of reads
- Checks if a known enzyme is present in a metagenomic NGS read set.
- Enrich unmappable reads by extending them, possibly making them mappable
- Checks what happens at the extremities of a contig
- Remove contaminants or symbiont reads from a read set
drwxr-xr-x root/root 0 2018-11-03 06:15 ./
drwxr-xr-x root/root 0 2018-11-03 06:15 ./usr/
drwxr-xr-x root/root 0 2018-11-03 06:15 ./usr/bin/
lrwxrwxrwx root/root 0 2018-11-03 06:15 ./usr/bin/mapsembler2_extend -> mapsembler_extend
-rwxr-xr-x root/root 235032 2018-11-03 06:15 ./usr/bin/mapsembler2_extremities
-rwxr-xr-x root/root 54740 2018-11-03 06:15 ./usr/bin/mapsembler2_kissreads
-rwxr-xr-x root/root 108048 2018-11-03 06:15 ./usr/bin/mapsembler2_kissreads_graph
-rwxr-xr-x root/root 144992 2018-11-03 06:15 ./usr/bin/mapsembler_extend
-rwxr-xr-x root/root 9585 2018-11-03 06:15 ./usr/bin/run_mapsembler2_pipeline
drwxr-xr-x root/root 0 2018-11-03 06:15 ./usr/share/
drwxr-xr-x root/root 0 2018-11-03 06:15 ./usr/share/doc/
drwxr-xr-x root/root 0 2018-11-03 06:15 ./usr/share/doc/mapsembler2/
-rw-r--r-- root/root 218 2018-11-03 06:15 ./usr/share/doc/mapsembler2/README.Debian
-rw-r--r-- root/root 228 2018-11-03 06:15 ./usr/share/doc/mapsembler2/changelog.Debian.armhf.gz
-rw-r--r-- root/root 1280 2018-11-03 06:15 ./usr/share/doc/mapsembler2/changelog.Debian.gz
-rw-r--r-- root/root 3952 2018-11-03 06:15 ./usr/share/doc/mapsembler2/copyright
drwxr-xr-x root/root 0 2018-11-03 06:15 ./usr/share/man/
drwxr-xr-x root/root 0 2018-11-03 06:15 ./usr/share/man/man1/
lrwxrwxrwx root/root 0 2018-11-03 06:15 ./usr/share/man/man1/mapsembler2_extend.1.gz -> mapsembler_extend.1.gz
-rw-r--r-- root/root 742 2018-11-03 06:15 ./usr/share/man/man1/mapsembler2_extremities.1.gz
-rw-r--r-- root/root 1318 2018-11-03 06:15 ./usr/share/man/man1/mapsembler2_kissreads.1.gz
-rw-r--r-- root/root 878 2018-11-03 06:15 ./usr/share/man/man1/mapsembler2_kissreads_graph.1.gz
-rw-r--r-- root/root 1033 2018-11-03 06:15 ./usr/share/man/man1/mapsembler_extend.1.gz
-rw-r--r-- root/root 1022 2018-11-03 06:15 ./usr/share/man/man1/run_mapsembler2_pipeline.1.gz
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| Post Build |
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| Cleanup |
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Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
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| Summary |
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Build Architecture: armhf
Build-Space: 215328
Build-Time: 583
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 322
Job: mapsembler2_2.2.4+dfsg-3
Machine Architecture: armhf
Package: mapsembler2
Package-Time: 923
Source-Version: 2.2.4+dfsg-3
Space: 215328
Status: successful
Version: 2.2.4+dfsg-3+b1
--------------------------------------------------------------------------------
Finished at 2018-12-19T12:39:07Z
Build needed 00:15:23, 215328k disk space