Raspbian Package Auto-Building

Build log for mapsembler2 (2.2.3+dfsg-3) on armhf

mapsembler2 → 2.2.3+dfsg-3 → armhf → 2016-09-15 20:04:19 

sbuild (Debian sbuild) 0.66.0 (04 Oct 2015) on bm-wb-03

+==============================================================================+
| mapsembler2 2.2.3+dfsg-3 (armhf)                           15 Sep 2016 19:23 |
+==============================================================================+

Package: mapsembler2
Version: 2.2.3+dfsg-3
Source Version: 2.2.3+dfsg-3
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'build/mapsembler2-xshJDO/mapsembler2-2.2.3+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/mapsembler2-xshJDO' with '<<BUILDDIR>>'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-51a6ed01-dfc8-4f61-97fc-6c7badadd956' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.0.1/private stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private stretch-staging/main Sources [9284 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf Packages [11.2 MB]
Fetched 20.5 MB in 24s (847 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'mapsembler2' packaging is maintained in the 'Svn' version control system at:
svn://anonscm.debian.org/debian-med/trunk/packages/mapsembler2/trunk/
Need to get 1772 kB of source archives.
Get:1 http://172.17.0.1/private stretch-staging/main mapsembler2 2.2.3+dfsg-3 (dsc) [2287 B]
Get:2 http://172.17.0.1/private stretch-staging/main mapsembler2 2.2.3+dfsg-3 (tar) [1761 kB]
Get:3 http://172.17.0.1/private stretch-staging/main mapsembler2 2.2.3+dfsg-3 (diff) [8920 B]
Fetched 1772 kB in 0s (6702 kB/s)
Download complete and in download only mode

Check architectures
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Check dependencies
------------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-UipT_z/apt_archive/sbuild-build-depends-core-dummy.deb'.
Warning: apt-key output should not be parsed (stdout is not a terminal)
OK
Get:1 file:/<<BUILDDIR>>/resolver-UipT_z/apt_archive ./ InRelease
Ign:1 file:/<<BUILDDIR>>/resolver-UipT_z/apt_archive ./ InRelease
Get:2 file:/<<BUILDDIR>>/resolver-UipT_z/apt_archive ./ Release [2119 B]
Get:2 file:/<<BUILDDIR>>/resolver-UipT_z/apt_archive ./ Release [2119 B]
Get:3 file:/<<BUILDDIR>>/resolver-UipT_z/apt_archive ./ Release.gpg [299 B]
Get:3 file:/<<BUILDDIR>>/resolver-UipT_z/apt_archive ./ Release.gpg [299 B]
Get:4 file:/<<BUILDDIR>>/resolver-UipT_z/apt_archive ./ Sources [214 B]
Get:5 file:/<<BUILDDIR>>/resolver-UipT_z/apt_archive ./ Packages [527 B]
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: file:///<<BUILDDIR>>/resolver-UipT_z/apt_archive/./Release.gpg: Signature by key 3493EC2B8E6DC280C121C60435506D9A48F77B2E uses weak digest algorithm (SHA1)
Reading package lists...

+------------------------------------------------------------------------------+
| Install core build dependencies (apt-based resolver)                         |
+------------------------------------------------------------------------------+

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 33 not upgraded.
Need to get 0 B/764 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 file:/<<BUILDDIR>>/resolver-UipT_z/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [764 B]
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package sbuild-build-depends-core-dummy.
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Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
Merged Build-Depends: debhelper (>= 9), cmake, bc, zlib1g-dev, help2man, libhdf5-dev, libcppunit-dev, libboost-dev
Filtered Build-Depends: debhelper (>= 9), cmake, bc, zlib1g-dev, help2man, libhdf5-dev, libcppunit-dev, libboost-dev
dpkg-deb: building package 'sbuild-build-depends-mapsembler2-dummy' in '/<<BUILDDIR>>/resolver-mkYtI3/apt_archive/sbuild-build-depends-mapsembler2-dummy.deb'.
Warning: apt-key output should not be parsed (stdout is not a terminal)
OK
Get:1 file:/<<BUILDDIR>>/resolver-mkYtI3/apt_archive ./ InRelease
Ign:1 file:/<<BUILDDIR>>/resolver-mkYtI3/apt_archive ./ InRelease
Get:2 file:/<<BUILDDIR>>/resolver-mkYtI3/apt_archive ./ Release [2119 B]
Get:2 file:/<<BUILDDIR>>/resolver-mkYtI3/apt_archive ./ Release [2119 B]
Get:3 file:/<<BUILDDIR>>/resolver-mkYtI3/apt_archive ./ Release.gpg [299 B]
Get:3 file:/<<BUILDDIR>>/resolver-mkYtI3/apt_archive ./ Release.gpg [299 B]
Get:4 file:/<<BUILDDIR>>/resolver-mkYtI3/apt_archive ./ Sources [257 B]
Get:5 file:/<<BUILDDIR>>/resolver-mkYtI3/apt_archive ./ Packages [571 B]
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: file:///<<BUILDDIR>>/resolver-mkYtI3/apt_archive/./Release.gpg: Signature by key 3493EC2B8E6DC280C121C60435506D9A48F77B2E uses weak digest algorithm (SHA1)
Reading package lists...

+------------------------------------------------------------------------------+
| Install mapsembler2 build dependencies (apt-based resolver)                  |
+------------------------------------------------------------------------------+

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bc bsdmainutils cmake cmake-data
  debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base
  groff-base hdf5-helpers help2man intltool-debian libaec-dev libaec0
  libarchive-zip-perl libarchive13 libboost-dev libboost1.61-dev libbsd0
  libcppunit-1.13-0v5 libcppunit-dev libcroco3 libcurl3 libexpat1 libffi6
  libfile-stripnondeterminism-perl libgfortran3 libglib2.0-0 libgnutls30
  libgssapi-krb5-2 libhdf5-10 libhdf5-cpp-11 libhdf5-dev libhogweed4 libicu57
  libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjsoncpp1 libk5crypto3
  libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 liblzo2-2 libmagic-mgc
  libmagic1 libnettle6 libnghttp2-14 libp11-kit0 libpipeline1 librtmp1
  libsasl2-2 libsasl2-modules-db libsigsegv2 libssh2-1 libssl1.0.2 libsz2
  libtasn1-6 libtimedate-perl libtool libunistring0 libxml2 m4 man-db
  po-debconf zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
  vacation codeblocks eclipse ninja-build dh-make gettext-doc libasprintf-dev
  libgettextpo-dev groff lrzip libboost-doc libboost1.61-doc
  libboost-atomic1.61-dev libboost-chrono1.61-dev libboost-context1.61-dev
  libboost-coroutine1.61-dev libboost-date-time1.61-dev
  libboost-exception1.61-dev libboost-filesystem1.61-dev
  libboost-graph1.61-dev libboost-graph-parallel1.61-dev
  libboost-iostreams1.61-dev libboost-locale1.61-dev libboost-log1.61-dev
  libboost-math1.61-dev libboost-mpi1.61-dev libboost-mpi-python1.61-dev
  libboost-program-options1.61-dev libboost-python1.61-dev
  libboost-random1.61-dev libboost-regex1.61-dev
  libboost-serialization1.61-dev libboost-signals1.61-dev
  libboost-system1.61-dev libboost-test1.61-dev libboost-thread1.61-dev
  libboost-timer1.61-dev libboost-wave1.61-dev libboost1.61-tools-dev
  libmpfrc++-dev libntl-dev libcppunit-doc gnutls-bin krb5-doc krb5-user
  libhdf5-doc libtool-doc gfortran | fortran95-compiler gcj-jdk less
  www-browser libmail-box-perl
Recommended packages:
  curl | wget | lynx-cur ca-certificates libglib2.0-data shared-mime-info
  xdg-user-dirs krb5-locales libsasl2-modules libltdl-dev xml-core
  libmail-sendmail-perl
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bc bsdmainutils cmake cmake-data
  debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base
  groff-base hdf5-helpers help2man intltool-debian libaec-dev libaec0
  libarchive-zip-perl libarchive13 libboost-dev libboost1.61-dev libbsd0
  libcppunit-1.13-0v5 libcppunit-dev libcroco3 libcurl3 libexpat1 libffi6
  libfile-stripnondeterminism-perl libgfortran3 libglib2.0-0 libgnutls30
  libgssapi-krb5-2 libhdf5-10 libhdf5-cpp-11 libhdf5-dev libhogweed4 libicu57
  libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjsoncpp1 libk5crypto3
  libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 liblzo2-2 libmagic-mgc
  libmagic1 libnettle6 libnghttp2-14 libp11-kit0 libpipeline1 librtmp1
  libsasl2-2 libsasl2-modules-db libsigsegv2 libssh2-1 libssl1.0.2 libsz2
  libtasn1-6 libtimedate-perl libtool libunistring0 libxml2 m4 man-db
  po-debconf sbuild-build-depends-mapsembler2-dummy zlib1g-dev
0 upgraded, 74 newly installed, 0 to remove and 33 not upgraded.
Need to get 40.3 MB/40.6 MB of archives.
After this operation, 234 MB of additional disk space will be used.
Get:1 file:/<<BUILDDIR>>/resolver-mkYtI3/apt_archive ./ sbuild-build-depends-mapsembler2-dummy 0.invalid.0 [810 B]
Get:2 http://172.17.0.1/private stretch-staging/main armhf groff-base armhf 1.22.3-8 [1087 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf libbsd0 armhf 0.8.3-1 [89.0 kB]
Get:4 http://172.17.0.1/private stretch-staging/main armhf bsdmainutils armhf 9.0.10 [177 kB]
Get:5 http://172.17.0.1/private stretch-staging/main armhf libpipeline1 armhf 1.4.1-2 [23.7 kB]
Get:6 http://172.17.0.1/private stretch-staging/main armhf man-db armhf 2.7.5-1 [975 kB]
Get:7 http://172.17.0.1/private stretch-staging/main armhf cmake-data all 3.6.1-1 [1152 kB]
Get:8 http://172.17.0.1/private stretch-staging/main armhf liblzo2-2 armhf 2.08-1.2 [47.6 kB]
Get:9 http://172.17.0.1/private stretch-staging/main armhf libicu57 armhf 57.1-4 [7407 kB]
Get:10 http://172.17.0.1/private stretch-staging/main armhf libxml2 armhf 2.9.4+dfsg1-1+b1 [803 kB]
Get:11 http://172.17.0.1/private stretch-staging/main armhf libarchive13 armhf 3.2.1-2 [250 kB]
Get:12 http://172.17.0.1/private stretch-staging/main armhf libkeyutils1 armhf 1.5.9-9 [11.9 kB]
Get:13 http://172.17.0.1/private stretch-staging/main armhf libkrb5support0 armhf 1.14.3+dfsg-2 [57.5 kB]
Get:14 http://172.17.0.1/private stretch-staging/main armhf libk5crypto3 armhf 1.14.3+dfsg-2 [110 kB]
Get:15 http://172.17.0.1/private stretch-staging/main armhf libkrb5-3 armhf 1.14.3+dfsg-2 [262 kB]
Get:16 http://172.17.0.1/private stretch-staging/main armhf libgssapi-krb5-2 armhf 1.14.3+dfsg-2 [131 kB]
Get:17 http://172.17.0.1/private stretch-staging/main armhf libp11-kit0 armhf 0.23.2-5 [93.9 kB]
Get:18 http://172.17.0.1/private stretch-staging/main armhf libtasn1-6 armhf 4.9-4 [44.9 kB]
Get:19 http://172.17.0.1/private stretch-staging/main armhf libgnutls30 armhf 3.5.3-4 [728 kB]
Get:20 http://172.17.0.1/private stretch-staging/main armhf libsasl2-modules-db armhf 2.1.26.dfsg1-15 [65.6 kB]
Get:21 http://172.17.0.1/private stretch-staging/main armhf libsasl2-2 armhf 2.1.26.dfsg1-15 [96.7 kB]
Get:22 http://172.17.0.1/private stretch-staging/main armhf libldap-2.4-2 armhf 2.4.42+dfsg-2+rpi1+b2 [198 kB]
Get:23 http://172.17.0.1/private stretch-staging/main armhf libnghttp2-14 armhf 1.14.0-1 [74.2 kB]
Get:24 http://172.17.0.1/private stretch-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-1 [54.2 kB]
Get:25 http://172.17.0.1/private stretch-staging/main armhf libssh2-1 armhf 1.7.0-1 [125 kB]
Get:26 http://172.17.0.1/private stretch-staging/main armhf libssl1.0.2 armhf 1.0.2h-1 [889 kB]
Get:27 http://172.17.0.1/private stretch-staging/main armhf libcurl3 armhf 7.50.1-1 [251 kB]
Get:28 http://172.17.0.1/private stretch-staging/main armhf libexpat1 armhf 2.2.0-1 [61.7 kB]
Get:29 http://172.17.0.1/private stretch-staging/main armhf libjsoncpp1 armhf 1.7.4-3 [66.2 kB]
Get:30 http://172.17.0.1/private stretch-staging/main armhf cmake armhf 3.6.1-1 [2269 kB]
Get:31 http://172.17.0.1/private stretch-staging/main armhf bc armhf 1.06.95-9 [96.3 kB]
Get:32 http://172.17.0.1/private stretch-staging/main armhf libmagic-mgc armhf 1:5.28-4 [210 kB]
Get:33 http://172.17.0.1/private stretch-staging/main armhf libmagic1 armhf 1:5.28-4 [104 kB]
Get:34 http://172.17.0.1/private stretch-staging/main armhf file armhf 1:5.28-4 [62.7 kB]
Get:35 http://172.17.0.1/private stretch-staging/main armhf gettext-base armhf 0.19.8.1-1 [117 kB]
Get:36 http://172.17.0.1/private stretch-staging/main armhf libsigsegv2 armhf 2.10-5 [28.4 kB]
Get:37 http://172.17.0.1/private stretch-staging/main armhf m4 armhf 1.4.17-5 [239 kB]
Get:38 http://172.17.0.1/private stretch-staging/main armhf autoconf all 2.69-10 [338 kB]
Get:39 http://172.17.0.1/private stretch-staging/main armhf autotools-dev all 20160430.1 [72.6 kB]
Get:40 http://172.17.0.1/private stretch-staging/main armhf automake all 1:1.15-4 [735 kB]
Get:41 http://172.17.0.1/private stretch-staging/main armhf autopoint all 0.19.8.1-1 [433 kB]
Get:42 http://172.17.0.1/private stretch-staging/main armhf libtool all 2.4.6-2 [545 kB]
Get:43 http://172.17.0.1/private stretch-staging/main armhf dh-autoreconf all 12 [15.8 kB]
Get:44 http://172.17.0.1/private stretch-staging/main armhf libarchive-zip-perl all 1.59-1 [95.5 kB]
Get:45 http://172.17.0.1/private stretch-staging/main armhf libfile-stripnondeterminism-perl all 0.023-2 [13.4 kB]
Get:46 http://172.17.0.1/private stretch-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:47 http://172.17.0.1/private stretch-staging/main armhf dh-strip-nondeterminism all 0.023-2 [8202 B]
Get:48 http://172.17.0.1/private stretch-staging/main armhf libglib2.0-0 armhf 2.49.6-1 [2518 kB]
Get:49 http://172.17.0.1/private stretch-staging/main armhf libcroco3 armhf 0.6.11-1 [131 kB]
Get:50 http://172.17.0.1/private stretch-staging/main armhf libunistring0 armhf 0.9.6+really0.9.3-0.1 [252 kB]
Get:51 http://172.17.0.1/private stretch-staging/main armhf gettext armhf 0.19.8.1-1 [1433 kB]
Get:52 http://172.17.0.1/private stretch-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:53 http://172.17.0.1/private stretch-staging/main armhf po-debconf all 1.0.19 [249 kB]
Get:54 http://172.17.0.1/private stretch-staging/main armhf debhelper all 10 [823 kB]
Get:55 http://172.17.0.1/private stretch-staging/main armhf hdf5-helpers armhf 1.8.16+docs-8 [35.3 kB]
Get:56 http://172.17.0.1/private stretch-staging/main armhf help2man armhf 1.47.4 [162 kB]
Get:57 http://172.17.0.1/private stretch-staging/main armhf libaec0 armhf 0.3.2-1 [19.4 kB]
Get:58 http://172.17.0.1/private stretch-staging/main armhf libboost1.61-dev armhf 1.61.0+dfsg-2.1 [6851 kB]
Get:59 http://172.17.0.1/private stretch-staging/main armhf libboost-dev armhf 1.61.0.2 [3758 B]
Get:60 http://172.17.0.1/private stretch-staging/main armhf libcppunit-1.13-0v5 armhf 1.13.2-2.1 [102 kB]
Get:61 http://172.17.0.1/private stretch-staging/main armhf libcppunit-dev armhf 1.13.2-2.1 [164 kB]
Get:62 http://172.17.0.1/private stretch-staging/main armhf libgfortran3 armhf 6.1.1-11+rpi1 [166 kB]
Get:63 http://172.17.0.1/private stretch-staging/main armhf libsz2 armhf 0.3.2-1 [5836 B]
Get:64 http://172.17.0.1/private stretch-staging/main armhf libhdf5-10 armhf 1.8.16+docs-8 [981 kB]
Get:65 http://172.17.0.1/private stretch-staging/main armhf libhdf5-cpp-11 armhf 1.8.16+docs-8 [115 kB]
Get:66 http://172.17.0.1/private stretch-staging/main armhf zlib1g-dev armhf 1:1.2.8.dfsg-2+b1 [197 kB]
Get:67 http://172.17.0.1/private stretch-staging/main armhf libjpeg62-turbo armhf 1:1.5.0-1 [109 kB]
Get:68 http://172.17.0.1/private stretch-staging/main armhf libjpeg62-turbo-dev armhf 1:1.5.0-1 [181 kB]
Get:69 http://172.17.0.1/private stretch-staging/main armhf libjpeg-dev all 1:1.5.0-1 [54.8 kB]
Get:70 http://172.17.0.1/private stretch-staging/main armhf libaec-dev armhf 0.3.2-1 [17.6 kB]
Get:71 http://172.17.0.1/private stretch-staging/main armhf libhdf5-dev armhf 1.8.16+docs-8 [4909 kB]
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-serial.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
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Setting up libldap-2.4-2:armhf (2.4.42+dfsg-2+rpi1+b2) ...
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Setting up libcurl3:armhf (7.50.1-1) ...
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Processing triggers for libc-bin (2.23-4) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 3.19.0-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.26.1-1 dpkg-dev_1.18.10 g++-6_6.1.1-11+rpi1 gcc-6_6.1.1-11+rpi1 libc6-dev_2.23-4 libstdc++-6-dev_6.1.1-11+rpi1 libstdc++6_6.1.1-11+rpi1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: adduser_3.115 apt_1.3~pre3 autoconf_2.69-10 automake_1:1.15-4 autopoint_0.19.8.1-1 autotools-dev_20160430.1 base-files_9.6+rpi1 base-passwd_3.5.39 bash_4.3-15 bc_1.06.95-9 binutils_2.26.1-1 bsdmainutils_9.0.10 bsdutils_1:2.28-6 build-essential_12.2 bzip2_1.0.6-8 cmake_3.6.1-1 cmake-data_3.6.1-1 console-setup_1.147 console-setup-linux_1.147 coreutils_8.25-2 cpio_2.11+dfsg-5 cpp_4:6.1.1-1 cpp-6_6.1.1-11+rpi1 dash_0.5.8-2.3 debconf_1.5.59 debfoster_2.7-2.1 debhelper_10 debianutils_4.8 dh-autoreconf_12 dh-strip-nondeterminism_0.023-2 diffutils_1:3.3-3 dmsetup_2:1.02.130-1 dpkg_1.18.10 dpkg-dev_1.18.10 e2fslibs_1.43.1-1 e2fsprogs_1.43.1-1 fakeroot_1.21-1 file_1:5.28-4 findutils_4.6.0+git+20160703-2 fuse2fs_1.43.1-1 g++_4:6.1.1-1 g++-6_6.1.1-11+rpi1 gcc_4:6.1.1-1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-14 gcc-5-base_5.4.0-4 gcc-6_6.1.1-11+rpi1 gcc-6-base_6.1.1-11+rpi1 gettext_0.19.8.1-1 gettext-base_0.19.8.1-1 gnupg_1.4.20-6 gpgv_1.4.20-6 grep_2.25-6 groff-base_1.22.3-8 gzip_1.6-5 hdf5-helpers_1.8.16+docs-8 help2man_1.47.4 hostname_3.18 ifupdown_0.8.13 init_1.42 init-system-helpers_1.42 initscripts_2.88dsf-59.8 insserv_1.14.0-5.4 intltool-debian_0.35.0+20060710.4 iproute2_4.6.0-1 kbd_2.0.3-2 keyboard-configuration_1.147 klibc-utils_2.0.4-9+rpi1 kmod_22-1.1 libacl1_2.2.52-3 libaec-dev_0.3.2-1 libaec0_0.3.2-1 libapparmor1_2.10.95-4 libapt-pkg5.0_1.3~pre3 libarchive-zip-perl_1.59-1 libarchive13_3.2.1-2 libasan3_6.1.1-11+rpi1 libatm1_1:2.5.1-1.6 libatomic1_6.1.1-11+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.6.5-1 libaudit1_1:2.6.5-1 libblkid1_2.28-6 libboost-dev_1.61.0.2 libboost1.61-dev_1.61.0+dfsg-2.1 libbsd0_0.8.3-1 libbz2-1.0_1.0.6-8 libc-bin_2.23-4 libc-dev-bin_2.23-4 libc6_2.23-4 libc6-dev_2.23-4 libcap-ng0_0.7.7-3 libcap2_1:2.25-1 libcap2-bin_1:2.25-1 libcc1-0_6.1.1-11+rpi1 libcomerr2_1.43.1-1 libcppunit-1.13-0v5_1.13.2-2.1 libcppunit-dev_1.13.2-2.1 libcroco3_0.6.11-1 libcryptsetup4_2:1.7.0-2 libcurl3_7.50.1-1 libdb5.3_5.3.28-12 libdbus-1-3_1.10.8-1 libdebconfclient0_0.215 libdevmapper1.02.1_2:1.02.130-1 libdpkg-perl_1.18.10 libdrm2_2.4.70-1 libexpat1_2.2.0-1 libfakeroot_1.21-1 libfdisk1_2.28-6 libffi6_3.2.1-4 libfile-stripnondeterminism-perl_0.023-2 libfuse2_2.9.7-1 libgc1c2_1:7.4.2-8 libgcc-6-dev_6.1.1-11+rpi1 libgcc1_1:6.1.1-11+rpi1 libgcrypt20_1.7.2-2 libgdbm3_1.8.3-14 libgfortran3_6.1.1-11+rpi1 libglib2.0-0_2.49.6-1 libgmp10_2:6.1.1+dfsg-1 libgnutls30_3.5.3-4 libgomp1_6.1.1-11+rpi1 libgpg-error0_1.24-1 libgssapi-krb5-2_1.14.3+dfsg-2 libhdf5-10_1.8.16+docs-8 libhdf5-cpp-11_1.8.16+docs-8 libhdf5-dev_1.8.16+docs-8 libhogweed4_3.2-1 libicu57_57.1-4 libidn11_1.33-1 libisl15_0.17.1-1 libjpeg-dev_1:1.5.0-1 libjpeg62-turbo_1:1.5.0-1 libjpeg62-turbo-dev_1:1.5.0-1 libjsoncpp1_1.7.4-3 libk5crypto3_1.14.3+dfsg-2 libkeyutils1_1.5.9-9 libklibc_2.0.4-9+rpi1 libkmod2_22-1.1 libkrb5-3_1.14.3+dfsg-2 libkrb5support0_1.14.3+dfsg-2 libldap-2.4-2_2.4.42+dfsg-2+rpi1+b2 liblocale-gettext-perl_1.07-3 liblz4-1_0.0~r131-2 liblzma5_5.1.1alpha+20120614-2.1 liblzo2-2_2.08-1.2 libmagic-mgc_1:5.28-4 libmagic1_1:5.28-4 libmount1_2.28-6 libmpc3_1.0.3-1 libmpfr4_3.1.4-2 libncurses5_6.0+20160625-1 libncursesw5_6.0+20160625-1 libnettle6_3.2-1 libnghttp2-14_1.14.0-1 libp11-kit0_0.23.2-5 libpam-modules_1.1.8-3.3 libpam-modules-bin_1.1.8-3.3 libpam-runtime_1.1.8-3.3 libpam0g_1.1.8-3.3 libpcre3_2:8.39-1 libperl5.22_5.22.2-3 libpipeline1_1.4.1-2 libplymouth4_0.9.2-3 libpng12-0_1.2.54-6 libprocps6_2:3.3.12-2 libreadline6_6.3-8+b3 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.26.dfsg1-15 libsasl2-modules-db_2.1.26.dfsg1-15 libseccomp2_2.3.1-2 libselinux1_2.5-3 libsemanage-common_2.5-1 libsemanage1_2.5-1 libsepol1_2.5-1 libsigsegv2_2.10-5 libsmartcols1_2.28-6 libss2_1.43.1-1 libssh2-1_1.7.0-1 libssl1.0.2_1.0.2h-1 libstdc++-6-dev_6.1.1-11+rpi1 libstdc++6_6.1.1-11+rpi1 libsystemd0_230-7+b1 libsz2_0.3.2-1 libtasn1-6_4.9-4 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160625-1 libtool_2.4.6-2 libubsan0_6.1.1-11+rpi1 libudev1_230-7+b1 libunistring0_0.9.6+really0.9.3-0.1 libusb-0.1-4_2:0.1.12-30 libustr-1.0-1_1.0.4-5 libuuid1_2.28-6 libxml2_2.9.4+dfsg1-1+b1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.2-3.1 lsb-base_9.20160629+rpi1 m4_1.4.17-5 make_4.1-9 makedev_2.3.1-93 man-db_2.7.5-1 manpages_4.07-1 mawk_1.3.3-17 mount_2.28-6 multiarch-support_2.23-4 ncurses-base_6.0+20160625-1 ncurses-bin_6.0+20160625-1 netbase_5.3 passwd_1:4.2-3.1 patch_2.7.5-1 perl_5.22.2-3 perl-base_5.22.2-3 perl-modules-5.22_5.22.2-3 po-debconf_1.0.19 procps_2:3.3.12-2 psmisc_22.21-2.1 raspbian-archive-keyring_20120528.2 readline-common_6.3-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-mapsembler2-dummy_0.invalid.0 sed_4.2.2-7.1 sensible-utils_0.0.9 startpar_0.59-3.1 systemd_230-7+b1 systemd-sysv_230-7+b1 sysv-rc_2.88dsf-59.8 sysvinit-utils_2.88dsf-59.8 tar_1.29b-1 tzdata_2016f-1 udev_230-7+b1 util-linux_2.28-6 xkb-data_2.17-1 xz-utils_5.1.1alpha+20120614-2.1 zlib1g_1:1.2.8.dfsg-2+b1 zlib1g-dev_1:1.2.8.dfsg-2+b1

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Fri Sep  9 13:45:53 2016 UTC using RSA key ID D1C646D1
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./mapsembler2_2.2.3+dfsg-3.dsc
dpkg-source: info: extracting mapsembler2 in mapsembler2-2.2.3+dfsg
dpkg-source: info: unpacking mapsembler2_2.2.3+dfsg.orig.tar.gz
dpkg-source: info: unpacking mapsembler2_2.2.3+dfsg-3.debian.tar.xz
dpkg-source: info: applying use_debian_libs
dpkg-source: info: applying run_pipeline
dpkg-source: info: applying add_hardening
dpkg-source: info: applying skip_mphe
dpkg-source: info: applying gcc-5.patch

Check disc space
----------------

Sufficient free space for build

User Environment
----------------

DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LOGNAME=root
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-51a6ed01-dfc8-4f61-97fc-6c7badadd956
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=vt102
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package mapsembler2
dpkg-buildpackage: info: source version 2.2.3+dfsg-3
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build mapsembler2-2.2.3+dfsg
dpkg-buildpackage: info: host architecture armhf
 fakeroot debian/rules clean
dh clean
   dh_testdir
   dh_auto_clean
   debian/rules override_dh_clean
make[1]: Entering directory '/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg'
rm -rf mapsembler2_extremities/build
cd mapsembler2_extend && make clean
make[2]: Entering directory '/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extend'
rm -rf *.o ../minia/*.o read_coherence_mapsembler/*.o
make[2]: Leaving directory '/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extend'
rm -f mapsembler2_extend/mapsembler_extend
cd kissreads_graph && make clean
make[2]: Entering directory '/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/kissreads_graph'
rm -rf kissreads_graph *.o read_coherence_mapsembler/*.o ../minia/*.o
make[2]: Leaving directory '/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/kissreads_graph'
rm -f kissreads_graph/mapsembler2_kissreads_graph
cd kissreads && make clean
make[2]: Entering directory '/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/kissreads'
rm -rf ./src/*.o kissreads
make[2]: Leaving directory '/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/kissreads'
rm -f kissreads/mapsembler2_kissreads
rm -f mapsembler2_extremities.1
rm -f mapsembler_extend.1
rm -f kissreads.1
rm -f kissreads_graph.1
dh_clean
make[1]: Leaving directory '/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg'
 debian/rules build-arch
dh build-arch
   dh_testdir -a
   dh_update_autotools_config -a
   dh_auto_configure -a
   debian/rules override_dh_auto_build
make[1]: Entering directory '/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg'
mkdir mapsembler2_extremities/build
cd mapsembler2_extremities/build && cmake .. && make
-- The C compiler identification is GNU 6.1.1
-- The CXX compiler identification is GNU 6.1.1
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Performing Test SHARED_PTR_USE_TR1_MEMORY
-- Performing Test SHARED_PTR_USE_TR1_MEMORY - Success
-- Performing Test SHARED_PTR_USE_MEMORY
-- Performing Test SHARED_PTR_USE_MEMORY - Success
-- Performing Test UNORDERED_MAP_USE_TR1_UNORDERED_MAP
-- Performing Test UNORDERED_MAP_USE_TR1_UNORDERED_MAP - Success
-- Performing Test UNORDERED_MAP_USE_UNORDERED_MAP
-- Performing Test UNORDERED_MAP_USE_UNORDERED_MAP - Success
-- gatb-core is here '/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core'
-- CppUnit: found headers (in /usr/include) but not the library...
-- CppUnit NOT FOUND
-- Found Perl: /usr/bin/perl (found version "5.22.2") 
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of __uint128
-- Check size of __uint128 - failed
CMake Warning (dev) at thirdparty/gatb-core/cmake/DefineInteger.cmake:11 (if):
  Policy CMP0054 is not set: Only interpret if() arguments as variables or
  keywords when unquoted.  Run "cmake --help-policy CMP0054" for policy
  details.  Use the cmake_policy command to set the policy and suppress this
  warning.

  Quoted variables like "HAVE_int128_t_USE__uint128" will no longer be
  dereferenced when the policy is set to NEW.  Since the policy is not set
  the OLD behavior will be used.
Call Stack (most recent call first):
  thirdparty/gatb-core/cmake/DefineInteger.cmake:33 (Check_Int128)
  thirdparty/gatb-core/CMakeLists.txt:39 (DefineInteger)
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Check size of __uint128_t
-- Check size of __uint128_t - failed
-------------------------------------------------------------------------------------
-- C++ EXTENSIONS WILL BE USED...
-------------------------------------------------------------------------------------
-- Options:  -O3  -DWITH_LAMBDA_EXPRESSION  -std=c++0x -Wno-invalid-offsetof
-- SUPPORTED KMER SIZES ARE 32 64 96 128
--  ---------- GATB TOOLS ----------
-- Could NOT find Doxygen (missing:  DOXYGEN_EXECUTABLE) 
--  ---------- GATB EXAMPLES ----------
-- Add compilation option -DUNORDERED_MAP_TR1_FOUND=1
-- Configuring done
CMake Warning (dev) at thirdparty/gatb-core/CMakeLists.txt:201 (ADD_DEPENDENCIES):
  Policy CMP0046 is not set: Error on non-existent dependency in
  add_dependencies.  Run "cmake --help-policy CMP0046" for policy details.
  Use the cmake_policy command to set the policy and suppress this warning.

  The dependency target "hdf5" of target "gatbcore-static" does not exist.
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Generating done
-- Build files have been written to: /<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build
make[2]: Entering directory '/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build'
make[3]: Entering directory '/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build'
make[4]: Entering directory '/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build'
Scanning dependencies of target gatbcore-static
make[4]: Leaving directory '/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build'
make[4]: Entering directory '/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build'
[  3%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o
[  3%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o
In file included from /<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:32:0,
                 from /<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/System.hpp:31,
                 from /<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/api/Data.hpp:32,
                 from /<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/Sequence.hpp:31,
                 from /<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/IBank.hpp:33,
                 from /<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/AbstractBank.hpp:31,
                 from /<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankBinary.hpp:31,
                 from /<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankBinary.cpp:20:
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp: In constructor 'gatb::core::system::ExceptionErrno::ExceptionErrno(const char*, ...)':
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:47: warning: ignoring return value of 'char* strerror_r(int, char*, size_t)', declared with attribute warn_unused_result [-Wunused-result]
             strerror_r (errno, buffer, BUFSIZ);
                                               ^
[  7%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o
[  7%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o
In file included from /<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:32:0,
                 from /<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/System.hpp:31,
                 from /<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/api/Data.hpp:32,
                 from /<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/Sequence.hpp:31,
                 from /<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/IBank.hpp:33,
                 from /<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/AbstractBank.hpp:31,
                 from /<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankFasta.hpp:32,
                 from /<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankFasta.cpp:20:
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp: In constructor 'gatb::core::system::ExceptionErrno::ExceptionErrno(const char*, ...)':
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:47: warning: ignoring return value of 'char* strerror_r(int, char*, size_t)', declared with attribute warn_unused_result [-Wunused-result]
             strerror_r (errno, buffer, BUFSIZ);
                                               ^
[ 10%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o
[ 10%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o
[ 14%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRegistery.cpp.o
[ 14%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o
[ 17%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o
In file included from /<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40:0,
                 from /<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45,
                 from /<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34,
                 from /<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32,
                 from /<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20:
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<128u>::Count]':
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
         vasprintf (&buffer, fmt, args);
         ^~~~~~~~~
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<96u>::Count]':
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<64u>::Count]':
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<32u>::Count]':
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
[ 17%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o
[ 21%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp: In static member function 'static gatb::core::debruijn::impl::Graph gatb::core::debruijn::impl::Graph::create(gatb::core::bank::IBank*, const char*, ...)':
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:566:35: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
     vasprintf (&buffer, fmt, args);
                                   ^
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp: In static member function 'static gatb::core::debruijn::impl::Graph gatb::core::debruijn::impl::Graph::create(const char*, ...)':
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:590:35: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
     vasprintf (&buffer, fmt, args);
                                   ^
In file included from /<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:30:0:
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function 'static std::__cxx11::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)':
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:39: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
         vasprintf (&buffer, fmt, args);
                                       ^
[ 21%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o
[ 25%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In member function 'bool gatb::core::debruijn::impl::MonumentTraversal::validate_consensuses(std::set<gatb::core::debruijn::impl::Path>&, gatb::core::debruijn::impl::Path&)':
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:675:87: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::set<gatb::core::debruijn::impl::Path>::size_type {aka unsigned int}' [-Wformat=]
     if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev);
                                                                                       ^
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In member function 'gatb::core::debruijn::impl::Path gatb::core::debruijn::impl::MonumentTraversal::most_abundant_consensus(std::set<gatb::core::debruijn::impl::Path>&)':
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:772:80: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long int' [-Wformat=]
             printf("path: %s mean abundance: %d\n",p_str.c_str(),mean_abundance);
                                                                                ^
[ 25%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o
In file included from /<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40:0,
                 from /<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.hpp:35,
                 from /<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp:20:
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt8]':
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
         vasprintf (&buffer, fmt, args);
         ^~~~~~~~~
[ 28%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o
[ 32%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o
In file included from /<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40:0,
                 from /<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45,
                 from /<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20:
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt8]':
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
         vasprintf (&buffer, fmt, args);
         ^~~~~~~~~
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<4>]':
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<3>]':
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<2>]':
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<1>]':
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
[ 32%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o
[ 35%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o
[ 35%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o
[ 39%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o
[ 39%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp.o
In file included from /<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40:0,
                 from /<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38,
                 from /<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25,
                 from /<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp:1:
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<1>]':
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
         vasprintf (&buffer, fmt, args);
         ^~~~~~~~~
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt64]':
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::misc::IHistogram::Entry]':
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<32u>::Count]':
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
In file included from /<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:26:0,
                 from /<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp:1:
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function 'static std::__cxx11::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)':
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:39: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
         vasprintf (&buffer, fmt, args);
                                       ^
[ 42%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp.o
In file included from /<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40:0,
                 from /<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38,
                 from /<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25,
                 from /<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp:1:
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<2>]':
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
         vasprintf (&buffer, fmt, args);
         ^~~~~~~~~
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt64]':
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::misc::IHistogram::Entry]':
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<64u>::Count]':
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
In file included from /<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:26:0,
                 from /<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp:1:
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function 'static std::__cxx11::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)':
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:39: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
         vasprintf (&buffer, fmt, args);
                                       ^
[ 42%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp.o
In file included from /<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40:0,
                 from /<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38,
                 from /<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25,
                 from /<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp:1:
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<3>]':
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
         vasprintf (&buffer, fmt, args);
         ^~~~~~~~~
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt64]':
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::misc::IHistogram::Entry]':
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<96u>::Count]':
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
In file included from /<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:26:0,
                 from /<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp:1:
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function 'static std::__cxx11::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)':
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:39: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
         vasprintf (&buffer, fmt, args);
                                       ^
[ 46%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp.o
In file included from /<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40:0,
                 from /<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38,
                 from /<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25,
                 from /<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp:1:
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<4>]':
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
         vasprintf (&buffer, fmt, args);
         ^~~~~~~~~
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt64]':
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::misc::IHistogram::Entry]':
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<128u>::Count]':
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
In file included from /<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:26:0,
                 from /<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp:1:
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function 'static std::__cxx11::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)':
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:39: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
         vasprintf (&buffer, fmt, args);
                                       ^
[ 46%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o
In file included from /<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/FileSystemCommon.hpp:32:0,
                 from /<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/FileSystemCommon.cpp:20:
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp: In constructor 'gatb::core::system::ExceptionErrno::ExceptionErrno(const char*, ...)':
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:47: warning: ignoring return value of 'char* strerror_r(int, char*, size_t)', declared with attribute warn_unused_result [-Wunused-result]
             strerror_r (errno, buffer, BUFSIZ);
                                               ^
[ 50%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o
[ 50%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o
[ 53%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o
[ 53%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o
[ 57%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o
[ 57%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadMacos.cpp.o
[ 60%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o
[ 64%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Command.cpp.o
[ 64%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Observer.cpp.o
[ 67%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Algorithm.cpp.o
[ 67%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Histogram.cpp.o
[ 71%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/OptionsParser.cpp.o
In file included from /<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/OptionsParser.cpp:23:0:
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function 'static std::__cxx11::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)':
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:39: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
         vasprintf (&buffer, fmt, args);
                                       ^
[ 71%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Progress.cpp.o
[ 75%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Property.cpp.o
[ 75%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/TimeInfo.cpp.o
[ 78%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tokenizer.cpp.o
[ 78%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tool.cpp.o
[ 82%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/XmlReader.cpp.o
[ 82%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/Storage.cpp.o
In file included from /<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40:0,
                 from /<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.cpp:22:
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract<Item>::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt8]':
/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:9: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result]
         vasprintf (&buffer, fmt, args);
         ^~~~~~~~~
[ 85%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o
[ 85%] Linking CXX static library ../lib/libgatbcore.a
make[4]: Leaving directory '/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build'
[ 85%] Built target gatbcore-static
make[4]: Entering directory '/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build'
Scanning dependencies of target mapsembler2_extremities
make[4]: Leaving directory '/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build'
make[4]: Entering directory '/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build'
[ 89%] Building CXX object CMakeFiles/mapsembler2_extremities.dir/src/main.cpp.o
[ 89%] Building CXX object CMakeFiles/mapsembler2_extremities.dir/src/mapsembler2_extremities.cpp.o
[ 92%] Linking CXX executable mapsembler2_extremities
make[4]: Leaving directory '/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build'
[ 92%] Built target mapsembler2_extremities
make[4]: Entering directory '/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build'
Scanning dependencies of target dbgh5
make[4]: Leaving directory '/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build'
make[4]: Entering directory '/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build'
[ 92%] Building CXX object ext/gatb-core/tools/CMakeFiles/dbgh5.dir/dbgh5.cpp.o
[ 96%] Linking CXX executable ../bin/dbgh5
make[4]: Leaving directory '/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build'
[ 96%] Built target dbgh5
make[4]: Entering directory '/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build'
Scanning dependencies of target dbginfo
make[4]: Leaving directory '/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build'
make[4]: Entering directory '/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build'
[ 96%] Building CXX object ext/gatb-core/tools/CMakeFiles/dbginfo.dir/dbginfo.cpp.o
[100%] Linking CXX executable ../bin/dbginfo
make[4]: Leaving directory '/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build'
[100%] Built target dbginfo
make[4]: Entering directory '/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build'
Scanning dependencies of target emphf_copyasis
make[4]: Leaving directory '/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build'
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[100%] Built target emphf_copyasis
make[3]: Leaving directory '/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build'
make[2]: Leaving directory '/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/build'
cd mapsembler2_extend && make k=29
make[2]: Entering directory '/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extend'
g++ -o ../minia/Pool.o -c ../minia/Pool.cpp -O3  -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extend=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial
g++ -o ../minia/Bank.o -c ../minia/Bank.cpp -O3  -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extend=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial
../minia/Bank.cpp: In member function 'void Bank::init(char**, int)':
../minia/Bank.cpp:282:44: warning: ignoring return value of 'char* strerror_r(int, char*, size_t)', declared with attribute warn_unused_result [-Wunused-result]
         strerror_r( errno, buffer, BUFSIZ ); // get string message from errno
                                            ^
../minia/Bank.cpp: In member function 'void BinaryBank::open(bool)':
../minia/Bank.cpp:713:44: warning: ignoring return value of 'char* strerror_r(int, char*, size_t)', declared with attribute warn_unused_result [-Wunused-result]
         strerror_r( errno, buffer, BUFSIZ ); // get string message from errno
                                            ^
../minia/Bank.cpp: In member function 'void BinaryReads::open(bool)':
../minia/Bank.cpp:798:44: warning: ignoring return value of 'char* strerror_r(int, char*, size_t)', declared with attribute warn_unused_result [-Wunused-result]
         strerror_r( errno, buffer, BUFSIZ ); // get string message from errno
                                            ^
../minia/Bank.cpp: In member function 'int KmersBuffer::readkmers()':
../minia/Bank.cpp:988:65: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
         fread(buffer,sizeof( char),block_size, binary_read_file); // read a block of sequences into the buffer
                                                                 ^
g++ -o ../minia/Bloom.o -c ../minia/Bloom.cpp -O3  -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extend=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial
../minia/Bloom.cpp: In member function 'void Bloom::load(char*)':
../minia/Bloom.cpp:257:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
  fread(blooma, sizeof(unsigned char), nchar, file_data);
                                                        ^
g++ -o ../minia/Hash16.o -c ../minia/Hash16.cpp -O3  -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extend=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial
g++ -o ../minia/Terminator.o -c ../minia/Terminator.cpp -O3  -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extend=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial
../minia/Terminator.cpp: In constructor 'BranchingTerminator::BranchingTerminator(BinaryBank*, BinaryBank*, Bloom*, Set*)':
../minia/Terminator.cpp:337:186: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'unsigned int' [-Wformat=]
         fprintf (stderr,"\nLoaded %lld branching kmers x %lu B =  %.1f MB\n",nb_branching_kmers,sizeof(cell<kmer_type>),((1<<NBITS_TERMINATOR)*sizeof(cell<kmer_type>)*1.0)/1024.0/1024.0);
                                                                                                                                                                                          ^
g++ -o ../minia/Kmer.o -c ../minia/Kmer.cpp -O3  -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extend=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial
g++ -o ../minia/Traversal.o -c ../minia/Traversal.cpp -O3  -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extend=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial
../minia/Traversal.cpp: In member function 'bool MonumentTraversal::find_starting_kmer(kmer_type, kmer_type&)':
../minia/Traversal.cpp:352:252: warning: format '%lu' expects argument of type 'long unsigned int', but argument 5 has type 'std::set<long long unsigned int>::size_type {aka unsigned int}' [-Wformat=]
                         if (debug) printf("depth %d useless int %d and starting belongs %d nb involved nodes %lu\n",frontline.depth,useless_int,all_involved_extensions.find(starting_kmer) != all_involved_extensions.end(),all_involved_extensions.size());
                                                                                                                                                                                                                                                            ^
../minia/Traversal.cpp: In member function 'bool MonumentTraversal::validate_consensuses(std::set<std::__cxx11::basic_string<char> >, char*, int&)':
../minia/Traversal.cpp:820:101: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'std::__cxx11::basic_string<char>::size_type {aka unsigned int}' [-Wformat=]
         if (debug)  printf("bubble path %d: %s (len=%lu)\n",path_number,(*it).c_str(),(*it).length());
                                                                                                     ^
../minia/Traversal.cpp:841:87: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::set<std::__cxx11::basic_string<char> >::size_type {aka unsigned int}' [-Wformat=]
     if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev);
                                                                                       ^
g++ -o ../minia/LinearCounter.o -c ../minia/LinearCounter.cpp -O3  -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extend=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial
g++ -o ../minia/Set.o -c ../minia/Set.cpp -O3  -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extend=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial
../minia/Set.cpp: In member function 'void AssocSet::print_total_size()':
../minia/Set.cpp:132:48: warning: format '%li' expects argument of type 'long int', but argument 2 has type 'std::vector<long long unsigned int>::size_type {aka unsigned int}' [-Wformat=]
     printf("Assoc set size: %li\n",liste.size());
                                                ^
../minia/Set.cpp:133:103: warning: format '%li' expects argument of type 'long int', but argument 2 has type 'std::vector<long long unsigned int>::size_type {aka unsigned int}' [-Wformat=]
     printf("Assoc set capacity: listekmer %li  liste val%li\n",liste.capacity(),liste_value.capacity());
                                                                                                       ^
../minia/Set.cpp:133:103: warning: format '%li' expects argument of type 'long int', but argument 3 has type 'std::vector<short unsigned int>::size_type {aka unsigned int}' [-Wformat=]
../minia/Set.cpp:136:11: warning: format '%li' expects argument of type 'long int', but argument 2 has type 'std::vector<long long unsigned int>::size_type {aka unsigned int}' [-Wformat=]
           );
           ^
../minia/Set.cpp:136:11: warning: format '%li' expects argument of type 'long int', but argument 3 has type 'unsigned int' [-Wformat=]
../minia/Set.cpp:136:11: warning: format '%li' expects argument of type 'long int', but argument 4 has type 'std::vector<short unsigned int>::size_type {aka unsigned int}' [-Wformat=]
../minia/Set.cpp:136:11: warning: format '%li' expects argument of type 'long int', but argument 5 has type 'unsigned int' [-Wformat=]
../minia/Set.cpp:136:11: warning: format '%li' expects argument of type 'long int', but argument 6 has type 'std::vector<long long unsigned int>::size_type {aka unsigned int}' [-Wformat=]
../minia/Set.cpp: In member function 'void AssocPairedSet::print()':
../minia/Set.cpp:242:45: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector<long long unsigned int>::size_type {aka unsigned int}' [-Wformat=]
     printf("print %lu elems \n",liste.size());
                                             ^
../minia/Set.cpp: In member function 'void AssocPairedSet::print_total_size()':
../minia/Set.cpp:298:55: warning: format '%li' expects argument of type 'long int', but argument 2 has type 'std::vector<long long unsigned int>::size_type {aka unsigned int}' [-Wformat=]
     printf("Assoc paired set size: %li\n",liste.size());
                                                       ^
../minia/Set.cpp:299:110: warning: format '%li' expects argument of type 'long int', but argument 2 has type 'std::vector<long long unsigned int>::size_type {aka unsigned int}' [-Wformat=]
     printf("Assoc paired set capacity: listekmer %li  liste val%li\n",liste.capacity(),liste_value.capacity());
                                                                                                              ^
../minia/Set.cpp:299:110: warning: format '%li' expects argument of type 'long int', but argument 3 has type 'std::vector<pair_nt_kmer>::size_type {aka unsigned int}' [-Wformat=]
../minia/Set.cpp:302:12: warning: format '%li' expects argument of type 'long int', but argument 2 has type 'std::vector<long long unsigned int>::size_type {aka unsigned int}' [-Wformat=]
            );
            ^
../minia/Set.cpp:302:12: warning: format '%li' expects argument of type 'long int', but argument 3 has type 'unsigned int' [-Wformat=]
../minia/Set.cpp:302:12: warning: format '%li' expects argument of type 'long int', but argument 4 has type 'std::vector<pair_nt_kmer>::size_type {aka unsigned int}' [-Wformat=]
../minia/Set.cpp:302:12: warning: format '%li' expects argument of type 'long int', but argument 5 has type 'unsigned int' [-Wformat=]
../minia/Set.cpp:302:12: warning: format '%li' expects argument of type 'long int', but argument 6 has type 'std::vector<long long unsigned int>::size_type {aka unsigned int}' [-Wformat=]
../minia/Set.cpp: In member function 'void AssocPairedSet::load(char*)':
../minia/Set.cpp:290:82: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
     fread(&liste_value[0], sizeof(pair_nt_kmer_t), liste_value.size(), file_data);
                                                                                  ^
g++ -o ../minia/Utils.o -c ../minia/Utils.cpp -O3  -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extend=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial
../minia/Utils.cpp: In function 'void end_kmer_count_partition(bool, Hash16*)':
../minia/Utils.cpp:187:42: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result]
     ftruncate(fileno(F_kmercpt_write), 0); //erase previous file
                                          ^
../minia/Utils.cpp:199:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
         fread(&cptk, sizeof(cptk), 1, F_kmercpt_read);
                                                      ^
../minia/Utils.cpp:225:45: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result]
         ftruncate(fileno(F_kmercpt_read), 0); //erase previous file
                                             ^
g++ -o ../minia/SortingCount.o -c ../minia/SortingCount.cpp -O3  -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extend=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial
../minia/SortingCount.cpp: In function 'void sorting_count(Bank*, char*, int, int, bool, int, bool)':
../minia/SortingCount.cpp:56:50: warning: ignoring return value of 'char* getcwd(char*, size_t)', declared with attribute warn_unused_result [-Wunused-result]
         getcwd(current_path,sizeof(current_path));
                                                  ^
../minia/SortingCount.cpp:283:52: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result]
         system("echo 3 > /proc/sys/vm/drop_caches");
                                                    ^
../minia/SortingCount.cpp:537:56: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result]
             system("echo 3 > /proc/sys/vm/drop_caches");
                                                        ^
g++ -o ../minia/Debloom.o -c ../minia/Debloom.cpp -O3  -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extend=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial
../minia/Debloom.cpp: In function 'void end_debloom_partition(bool)':
../minia/Debloom.cpp:29:39: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result]
  ftruncate(fileno(F_debloom_write), 0); //erase previous file
                                       ^
g++ -o ../minia/OAHash.o -c ../minia/OAHash.cpp -O3  -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extend=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial
g++ -o commons.o -c commons.cpp -O3  -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extend=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial
g++ -o IterativeExtensions.o -c IterativeExtensions.cpp -O3  -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extend=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial
g++ -o Fragment_Bank.o -c Fragment_Bank.cpp -O3  -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extend=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial
g++ -o Fragment.o -c Fragment.cpp -O3  -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extend=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial
g++ -o GraphOutput.o -c GraphOutput.cpp -O3  -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extend=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial
GraphOutput.cpp: In member function 'void GraphOutput::print_starter_head(int, char*)':
GraphOutput.cpp:145:154: warning: format '%ld' expects argument of type 'long int', but argument 6 has type 'size_t {aka unsigned int}' [-Wformat=]
         fprintf(starters_file,"\"Starter_%d\":{\"data\":{\"id\":\"S%d\", \"sequence\":\"%s\", \"length\":%ld,\n", index,index, sequence, strlen(sequence));
                                                                                                                                                          ^
GraphOutput.cpp: In member function 'void GraphOutput::print_node(long int, char*)':
GraphOutput.cpp:204:142: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'size_t {aka unsigned int}' [-Wformat=]
             fprintf(nodes_file," { \"data\": { \"id\":\"n%ld\", \"sequence\":\"%s\", \"length\":%ld}}\n",index,ascii_node, strlen(ascii_node));
                                                                                                                                              ^
g++ -o mapsembler_extend ../minia/Pool.o ../minia/Bank.o ../minia/Bloom.o ../minia/Hash16.o ../minia/Terminator.o ../minia/Kmer.o ../minia/Traversal.o ../minia/LinearCounter.o ../minia/Set.o ../minia/Utils.o ../minia/SortingCount.o ../minia/Debloom.o ../minia/OAHash.o commons.o IterativeExtensions.o Fragment_Bank.o Fragment.o GraphOutput.o mapsembler_extend.cpp -O3  -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extend=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -fPIE -pie -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial
mapsembler_extend.cpp: In function 'int main(int, char**)':
mapsembler_extend.cpp:260:66: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'unsigned int' [-Wformat=]
     fprintf (stderr,"taille cell %lu \n", sizeof(cell<kmer_type>));
                                                                  ^
mapsembler_extend.cpp:320:101: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result]
     command = string("rm -f ")+string(prefix_trashable)+string("*"); system((char *)command.c_str());
                                                                                                     ^
make[2]: Leaving directory '/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/mapsembler2_extend'
cd kissreads_graph && make k=29
make[2]: Entering directory '/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/kissreads_graph'
g++ -o block_allocator.o -c block_allocator.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/kissreads_graph=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64
g++ -o DeBruijnGraph.o -c DeBruijnGraph.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/kissreads_graph=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64
DeBruijnGraph.cpp: In member function 'int DBG::output_graph(FILE*, int, int&, bool, bool)':
DeBruijnGraph.cpp:405:91: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t {aka unsigned int}' [-Wformat=]
         fprintf(out,", \"length\": %lu", strlen(all_nodes[i]->fragment->fragment_sequence));
                                                                                           ^
g++ -o Fragment.o -c Fragment.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/kissreads_graph=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64
g++ -o json.o -c json.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/kissreads_graph=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64
g++ -o read_coherence_mapsembler/libchash.o -c read_coherence_mapsembler/libchash.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/kissreads_graph=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64
read_coherence_mapsembler/libchash.cpp: In function 'HTItem* HashFind(HashTable*, u_long)':
read_coherence_mapsembler/libchash.cpp:199:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
       fread(&_ul, sizeof(_ul), 1, (fp));   \
                                        ^
read_coherence_mapsembler/libchash.cpp:226:7: note: in expansion of macro 'READ_UL'
       READ_UL((ht)->fpData, cchData);                                         \
       ^~~~~~~
read_coherence_mapsembler/libchash.cpp:1227:3: note: in expansion of macro 'LOAD_AND_RETURN'
   LOAD_AND_RETURN(ht, Find(ht, KEY_TRUNC(ht, key), NULL));
   ^~~~~~~~~~~~~~~
read_coherence_mapsembler/libchash.cpp: In function 'HTItem* HashFindLast(HashTable*)':
read_coherence_mapsembler/libchash.cpp:199:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
       fread(&_ul, sizeof(_ul), 1, (fp));   \
                                        ^
read_coherence_mapsembler/libchash.cpp:226:7: note: in expansion of macro 'READ_UL'
       READ_UL((ht)->fpData, cchData);                                         \
       ^~~~~~~
read_coherence_mapsembler/libchash.cpp:1232:4: note: in expansion of macro 'LOAD_AND_RETURN'
    LOAD_AND_RETURN(ht, ht->posLastFind);
    ^~~~~~~~~~~~~~~
read_coherence_mapsembler/libchash.cpp: In function 'HTItem* HashFirstBucket(HashTable*)':
read_coherence_mapsembler/libchash.cpp:199:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
       fread(&_ul, sizeof(_ul), 1, (fp));   \
                                        ^
read_coherence_mapsembler/libchash.cpp:226:7: note: in expansion of macro 'READ_UL'
       READ_UL((ht)->fpData, cchData);                                         \
       ^~~~~~~
read_coherence_mapsembler/libchash.cpp:1296:3: note: in expansion of macro 'LOAD_AND_RETURN'
   LOAD_AND_RETURN(ht, retval);
   ^~~~~~~~~~~~~~~
read_coherence_mapsembler/libchash.cpp: In function 'HTItem* HashNextBucket(HashTable*)':
read_coherence_mapsembler/libchash.cpp:199:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
       fread(&_ul, sizeof(_ul), 1, (fp));   \
                                        ^
read_coherence_mapsembler/libchash.cpp:226:7: note: in expansion of macro 'READ_UL'
       READ_UL((ht)->fpData, cchData);                                         \
       ^~~~~~~
read_coherence_mapsembler/libchash.cpp:1306:3: note: in expansion of macro 'LOAD_AND_RETURN'
   LOAD_AND_RETURN(ht, retval);
   ^~~~~~~~~~~~~~~
read_coherence_mapsembler/libchash.cpp: In function 'HashTable* HashDoLoad(FILE*, char* (*)(FILE*, int), HashTable*)':
read_coherence_mapsembler/libchash.cpp:1413:31: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
    fread(szMagicKey, 1, 4, fp);
                               ^
read_coherence_mapsembler/libchash.cpp:199:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
       fread(&_ul, sizeof(_ul), 1, (fp));   \
                                        ^
read_coherence_mapsembler/libchash.cpp:1422:4: note: in expansion of macro 'READ_UL'
    READ_UL(fp, ht->cchKey);
    ^~~~~~~
read_coherence_mapsembler/libchash.cpp:199:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
       fread(&_ul, sizeof(_ul), 1, (fp));   \
                                        ^
read_coherence_mapsembler/libchash.cpp:1423:4: note: in expansion of macro 'READ_UL'
    READ_UL(fp, ht->cItems);
    ^~~~~~~
read_coherence_mapsembler/libchash.cpp:199:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
       fread(&_ul, sizeof(_ul), 1, (fp));   \
                                        ^
read_coherence_mapsembler/libchash.cpp:1424:4: note: in expansion of macro 'READ_UL'
    READ_UL(fp, ht->cDeletedItems);
    ^~~~~~~
read_coherence_mapsembler/libchash.cpp:199:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
       fread(&_ul, sizeof(_ul), 1, (fp));   \
                                        ^
read_coherence_mapsembler/libchash.cpp:1427:4: note: in expansion of macro 'READ_UL'
    READ_UL(fp, cchKey);
    ^~~~~~~
read_coherence_mapsembler/libchash.cpp:1429:34: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
    fread(rgchKeys, 1, cchKey, fp);
                                  ^
read_coherence_mapsembler/libchash.cpp:199:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
       fread(&_ul, sizeof(_ul), 1, (fp));   \
                                        ^
read_coherence_mapsembler/libchash.cpp:1434:7: note: in expansion of macro 'READ_UL'
       READ_UL(fp, bck->data);        /* all we need if dataRead is NULL */
       ^~~~~~~
read_coherence_mapsembler/libchash.cpp: In function 'u_long SparseRead(FILE*, SparseBin**)':
read_coherence_mapsembler/libchash.cpp:199:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
       fread(&_ul, sizeof(_ul), 1, (fp));   \
                                        ^
read_coherence_mapsembler/libchash.cpp:628:4: note: in expansion of macro 'READ_UL'
    READ_UL(fp, cBuckets);                /* actually, cBuckets is stored */
    ^~~~~~~
read_coherence_mapsembler/libchash.cpp:199:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
       fread(&_ul, sizeof(_ul), 1, (fp));   \
                                        ^
read_coherence_mapsembler/libchash.cpp:633:3: note: in expansion of macro 'READ_UL'
   READ_UL(fp, (*pbinSparse)[i].bmOccupied[j]);
   ^~~~~~~
g++ -o read_coherence_mapsembler/couple.o -c read_coherence_mapsembler/couple.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/kissreads_graph=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64
g++ -o read_coherence_mapsembler/misc_tools.o -c read_coherence_mapsembler/misc_tools.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/kissreads_graph=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64
g++ -o read_coherence_mapsembler/read_groups.o -c read_coherence_mapsembler/read_groups.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/kissreads_graph=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64
g++ -o read_coherence_mapsembler/consensus_common.o -c read_coherence_mapsembler/consensus_common.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/kissreads_graph=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64
g++ -o read_coherence_mapsembler/list.o -c read_coherence_mapsembler/list.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/kissreads_graph=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64
g++ -o read_coherence_mapsembler/read_coherence.o -c read_coherence_mapsembler/read_coherence.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/kissreads_graph=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64
read_coherence_mapsembler/read_coherence.cpp: In function 'char** read_coherent_homologs(hash_t, const char*, int, int, int, int, int*)':
read_coherence_mapsembler/read_coherence.cpp:991:53: warning: format '%X' expects argument of type 'unsigned int', but argument 3 has type 'group_t {aka list_*}' [-Wformat=]
                         substarters[*nb_consensuses]);
                                                     ^
read_coherence_mapsembler/read_coherence.cpp:1004:69: warning: format '%X' expects argument of type 'unsigned int', but argument 3 has type 'group_t {aka list_*}' [-Wformat=]
                         current_read_group_info->consensus, fragment);
                                                                     ^
g++ -o read_coherence_mapsembler/interface_libchash.o -c read_coherence_mapsembler/interface_libchash.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/kissreads_graph=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64
g++ -o commons.o -c commons.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/kissreads_graph=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64
g++ -o Loader.o -c Loader.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/kissreads_graph=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64
Loader.cpp: In function 'void load_json_rec_global(json_value*, int)':
Loader.cpp:114:100: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'std::vector<Node_dbg*>::size_type {aka unsigned int}' [-Wformat=]
                  printf("adding node %s = %ld\n", value->string_value, global_dbg->all_nodes.size());
                                                                                                    ^
g++ -o ReadMapper.o -c ReadMapper.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/kissreads_graph=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64
g++ -o kissreads_graph block_allocator.o DeBruijnGraph.o Fragment.o json.o read_coherence_mapsembler/libchash.o read_coherence_mapsembler/couple.o read_coherence_mapsembler/misc_tools.o read_coherence_mapsembler/read_groups.o read_coherence_mapsembler/consensus_common.o read_coherence_mapsembler/list.o read_coherence_mapsembler/read_coherence.o read_coherence_mapsembler/interface_libchash.o commons.o ../minia/Kmer.o ../minia/Bank.o Loader.o ReadMapper.o KissReadsGraph.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/kissreads_graph=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64  -fPIE -pie -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial
make[2]: Leaving directory '/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/kissreads_graph'
cd kissreads && make k=29
make[2]: Entering directory '/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/kissreads'
gcc  -o src/coherent_algorithm.o -c src/coherent_algorithm.c -O3 -lz  -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/kissreads=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -fopenmp -DOMP -I./include/
gcc  -o src/commons.o -c src/commons.c -O3 -lz  -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/kissreads=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -fopenmp -DOMP -I./include/
gcc  -o src/couple.o -c src/couple.c -O3 -lz  -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/kissreads=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -fopenmp -DOMP -I./include/
gcc  -o src/extension_algorithm.o -c src/extension_algorithm.c -O3 -lz  -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/kissreads=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -fopenmp -DOMP -I./include/
gcc  -o src/fragment_index.o -c src/fragment_index.c -O3 -lz  -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/kissreads=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -fopenmp -DOMP -I./include/
gcc  -o src/kissReads.o -c src/kissReads.c -O3 -lz  -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/kissreads=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -fopenmp -DOMP -I./include/
gcc  -o src/list.o -c src/list.c -O3 -lz  -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/kissreads=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -fopenmp -DOMP -I./include/
gcc  -o src/outputs.o -c src/outputs.c -O3 -lz  -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/kissreads=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -fopenmp -DOMP -I./include/
gcc  -o src/interface_libchash.o -c src/interface_libchash.c -O3 -lz  -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/kissreads=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -fopenmp -DOMP -I./include/
gcc  -o src/libchash.o -c src/libchash.c -O3 -lz  -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/kissreads=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -fopenmp -DOMP -I./include/
src/libchash.c: In function 'HashFind':
src/libchash.c:193:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
       fread(&_ul, sizeof(_ul), 1, (fp));   \
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
src/libchash.c:220:7: note: in expansion of macro 'READ_UL'
       READ_UL((ht)->fpData, cchData);                                         \
       ^~~~~~~
src/libchash.c:1221:4: note: in expansion of macro 'LOAD_AND_RETURN'
    LOAD_AND_RETURN(ht, Find(ht, KEY_TRUNC(ht, key), NULL));
    ^~~~~~~~~~~~~~~
src/libchash.c: In function 'HashFindLast':
src/libchash.c:193:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
       fread(&_ul, sizeof(_ul), 1, (fp));   \
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
src/libchash.c:220:7: note: in expansion of macro 'READ_UL'
       READ_UL((ht)->fpData, cchData);                                         \
       ^~~~~~~
src/libchash.c:1226:4: note: in expansion of macro 'LOAD_AND_RETURN'
    LOAD_AND_RETURN(ht, ht->posLastFind);
    ^~~~~~~~~~~~~~~
src/libchash.c: In function 'HashFirstBucket':
src/libchash.c:193:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
       fread(&_ul, sizeof(_ul), 1, (fp));   \
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
src/libchash.c:220:7: note: in expansion of macro 'READ_UL'
       READ_UL((ht)->fpData, cchData);                                         \
       ^~~~~~~
src/libchash.c:1290:3: note: in expansion of macro 'LOAD_AND_RETURN'
   LOAD_AND_RETURN(ht, retval);
   ^~~~~~~~~~~~~~~
src/libchash.c: In function 'HashNextBucket':
src/libchash.c:193:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
       fread(&_ul, sizeof(_ul), 1, (fp));   \
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
src/libchash.c:220:7: note: in expansion of macro 'READ_UL'
       READ_UL((ht)->fpData, cchData);                                         \
       ^~~~~~~
src/libchash.c:1300:3: note: in expansion of macro 'LOAD_AND_RETURN'
   LOAD_AND_RETURN(ht, retval);
   ^~~~~~~~~~~~~~~
src/libchash.c: In function 'HashDoLoad':
src/libchash.c:1407:4: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
    fread(szMagicKey, 1, 4, fp);
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~
src/libchash.c:193:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
       fread(&_ul, sizeof(_ul), 1, (fp));   \
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
src/libchash.c:1416:4: note: in expansion of macro 'READ_UL'
    READ_UL(fp, ht->cchKey);
    ^~~~~~~
src/libchash.c:193:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
       fread(&_ul, sizeof(_ul), 1, (fp));   \
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
src/libchash.c:1417:4: note: in expansion of macro 'READ_UL'
    READ_UL(fp, ht->cItems);
    ^~~~~~~
src/libchash.c:193:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
       fread(&_ul, sizeof(_ul), 1, (fp));   \
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
src/libchash.c:1418:4: note: in expansion of macro 'READ_UL'
    READ_UL(fp, ht->cDeletedItems);
    ^~~~~~~
src/libchash.c:193:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
       fread(&_ul, sizeof(_ul), 1, (fp));   \
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
src/libchash.c:1421:4: note: in expansion of macro 'READ_UL'
    READ_UL(fp, cchKey);
    ^~~~~~~
src/libchash.c:1423:4: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
    fread(rgchKeys, 1, cchKey, fp);
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
src/libchash.c:193:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
       fread(&_ul, sizeof(_ul), 1, (fp));   \
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
src/libchash.c:1428:7: note: in expansion of macro 'READ_UL'
       READ_UL(fp, bck->data);        /* all we need if dataRead is NULL */
       ^~~~~~~
src/libchash.c: In function 'SparseRead':
src/libchash.c:193:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
       fread(&_ul, sizeof(_ul), 1, (fp));   \
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
src/libchash.c:622:4: note: in expansion of macro 'READ_UL'
    READ_UL(fp, cBuckets);                /* actually, cBuckets is stored */
    ^~~~~~~
src/libchash.c:193:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
       fread(&_ul, sizeof(_ul), 1, (fp));   \
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
src/libchash.c:627:3: note: in expansion of macro 'READ_UL'
   READ_UL(fp, (*pbinSparse)[i].bmOccupied[j]);
   ^~~~~~~
gcc  -o src/tree.o -c src/tree.c -O3 -lz  -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/kissreads=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -fopenmp -DOMP -I./include/
gcc  -o kissreads src/coherent_algorithm.o src/commons.o src/couple.o src/extension_algorithm.o src/fragment_index.o src/kissReads.o src/list.o src/outputs.o src/interface_libchash.o src/libchash.o src/tree.o -fPIE -pie -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -lm -O3 -lz -fopenmp -DOMP
#################
# Compilation OK#
#################
make[2]: Leaving directory '/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg/kissreads'
make[1]: Leaving directory '/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg'
   dh_auto_test -a
 fakeroot debian/rules binary-arch
dh binary-arch
   dh_testroot -a
   dh_prep -a
   dh_auto_install -a
   debian/rules override_dh_install
make[1]: Entering directory '/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg'
help2man --help-option=-h --no-discard-stderr --version-string=2.2.3+dfsg ./mapsembler2_extremities/build/mapsembler2_extremities > mapsembler2_extremities.1
help2man --help-option=-h --no-discard-stderr --version-string=2.2.3+dfsg ./mapsembler2_extend/mapsembler_extend > mapsembler_extend.1
mv ./kissreads/kissreads ./kissreads/mapsembler2_kissreads
help2man --help-option=-h --no-discard-stderr --version-string=2.2.3+dfsg ./kissreads/mapsembler2_kissreads > mapsembler2_kissreads.1
mv ./kissreads_graph/kissreads_graph ./kissreads_graph/mapsembler2_kissreads_graph
help2man --help-option=-h --no-discard-stderr --version-string=2.2.3+dfsg ./kissreads_graph/mapsembler2_kissreads_graph > mapsembler2_kissreads_graph.1
cp run_mapsembler2_pipeline.sh run_mapsembler2_pipeline
help2man --help-option=-h --no-discard-stderr --version-string=2.2.3+dfsg ./run_mapsembler2_pipeline > run_mapsembler2_pipeline.1
dh_install
make[1]: Leaving directory '/<<BUILDDIR>>/mapsembler2-2.2.3+dfsg'
   dh_installdocs -a
   dh_installchangelogs -a
   dh_installman -a
   dh_perl -a
   dh_link -a
   dh_strip_nondeterminism -a
   dh_compress -a
   dh_fixperms -a
   dh_strip -a
   dh_makeshlibs -a
   dh_shlibdeps -a
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mapsembler2/usr/bin/mapsembler2_extremities was not linked against libhdf5_serial.so.10 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mapsembler2/usr/bin/mapsembler2_extremities was not linked against libdl.so.2 (it uses none of the library's symbols)
   dh_installdeb -a
   dh_gencontrol -a
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
   dh_md5sums -a
   dh_builddeb -a
dpkg-deb: building package 'mapsembler2-dbgsym' in '../mapsembler2-dbgsym_2.2.3+dfsg-3_armhf.deb'.
dpkg-deb: building package 'mapsembler2' in '../mapsembler2_2.2.3+dfsg-3_armhf.deb'.
 dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../mapsembler2_2.2.3+dfsg-3_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build mapsembler2-2.2.3+dfsg
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 20160915-2003

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Post Build Chroot                                                            |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


mapsembler2_2.2.3+dfsg-3_armhf.changes:
---------------------------------------

Format: 1.8
Date: Fri, 09 Sep 2016 15:41:22 +0200
Source: mapsembler2
Binary: mapsembler2
Architecture: armhf
Version: 2.2.3+dfsg-3
Distribution: stretch-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 mapsembler2 - bioinformatics targeted assembly software
Closes: 797526
Changes:
 mapsembler2 (2.2.3+dfsg-3) unstable; urgency=medium
 .
   * Fix type of prefix_trashable since gcc-5 is picky about it (Thanks to
     Gianfranco Costamagna <costamagnagianfranco@yahoo.it> for the hint)
     Closes: #797526
   * cme fix dpkg-control
   * DEP5 syntax
   * hardening=+all
 .
   [ Olivier Sallou ]
   * d/copyright: add Upstream-Contact
Checksums-Sha1:
 250cbb2a91a7d947bd30eecc02d8159621e7d073 2131492 mapsembler2-dbgsym_2.2.3+dfsg-3_armhf.deb
 ac3039e91c6f9a060ac7731e7f70bf1e5baa6fcb 214316 mapsembler2_2.2.3+dfsg-3_armhf.deb
Checksums-Sha256:
 2a3d5256486b1aa7983f82250b4e62c50a98e8169c4e7e6ea1f18c29cb7436b7 2131492 mapsembler2-dbgsym_2.2.3+dfsg-3_armhf.deb
 e7596067bbe6cec1c90ab0e21a5ceaffc4c96061eb3a96ff77e1fba0e7a53d3f 214316 mapsembler2_2.2.3+dfsg-3_armhf.deb
Files:
 4f697c17aadde53d393b96022cde3699 2131492 debug extra mapsembler2-dbgsym_2.2.3+dfsg-3_armhf.deb
 9db609aa6cd7abf030becd47af39c64e 214316 science optional mapsembler2_2.2.3+dfsg-3_armhf.deb

+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


mapsembler2-dbgsym_2.2.3+dfsg-3_armhf.deb
-----------------------------------------

 new debian package, version 2.0.
 size 2131492 bytes: control archive=667 bytes.
     566 bytes,    13 lines      control              
     424 bytes,     4 lines      md5sums              
 Package: mapsembler2-dbgsym
 Source: mapsembler2
 Version: 2.2.3+dfsg-3
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 2258
 Depends: mapsembler2 (= 2.2.3+dfsg-3)
 Section: debug
 Priority: extra
 Homepage: http://colibread.inria.fr/mapsembler2/
 Description: Debug symbols for mapsembler2
 Auto-Built-Package: debug-symbols
 Build-Ids: 61d8c34665612368943014c90a8c7c6e25301f66 743ce41bf9d3bae5b976e47f61ed93a54a7b30e6 e69d121e0b9b1705b79cc6363b63311628ad6efa ef6a722c3bbf20b70e315e6360e42cf9d8f57ea4

drwxr-xr-x root/root         0 2016-09-09 13:41 ./
drwxr-xr-x root/root         0 2016-09-09 13:41 ./usr/
drwxr-xr-x root/root         0 2016-09-09 13:41 ./usr/lib/
drwxr-xr-x root/root         0 2016-09-09 13:41 ./usr/lib/debug/
drwxr-xr-x root/root         0 2016-09-09 13:41 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2016-09-09 13:41 ./usr/lib/debug/.build-id/61/
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drwxr-xr-x root/root         0 2016-09-09 13:41 ./usr/share/doc/
lrwxrwxrwx root/root         0 2016-09-09 13:41 ./usr/share/doc/mapsembler2-dbgsym -> mapsembler2


mapsembler2_2.2.3+dfsg-3_armhf.deb
----------------------------------

 new debian package, version 2.0.
 size 214316 bytes: control archive=1339 bytes.
    1405 bytes,    27 lines      control              
     958 bytes,    13 lines      md5sums              
 Package: mapsembler2
 Version: 2.2.3+dfsg-3
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 645
 Depends: libc6 (>= 2.8), libgcc1 (>= 1:3.5), libgomp1 (>= 4.9), libhdf5-10, libstdc++6 (>= 5.2), zlib1g (>= 1:1.2.3.4), bc
 Section: science
 Priority: optional
 Homepage: http://colibread.inria.fr/mapsembler2/
 Description: bioinformatics targeted assembly software
  Mapsembler2 is a targeted assembly software.
  It takes as input a set of NGS raw reads (fasta or fastq, gzipped or not)
  and a set of input sequences (starters).
  .
  It first determines if each starter is read-coherent, e.g. whether reads
  confirm the presence of each starter in the original sequence.
  Then for each read-coherent starter, Mapsembler2 outputs its sequence
  neighborhood as a linear sequence or as a graph, depending on the user choice.
  .
  Mapsembler2 may be used for (not limited to):
   - Validate an assembled sequence (input as starter), e.g. from a de
     Bruijn graph assembly where read-coherence was not enforced.
   - Checks if a gene (input as starter) has an homolog in a set of reads
   - Checks if a known enzyme is present in a metagenomic NGS read set.
   - Enrich unmappable reads by extending them, possibly making them mappable
   - Checks what happens at the extremities of a contig
   - Remove contaminants or symbiont reads from a read set

drwxr-xr-x root/root         0 2016-09-09 13:41 ./
drwxr-xr-x root/root         0 2016-09-09 13:41 ./usr/
drwxr-xr-x root/root         0 2016-09-09 13:41 ./usr/bin/
-rwxr-xr-x root/root    276036 2016-09-09 13:41 ./usr/bin/mapsembler2_extremities
-rwxr-xr-x root/root     62924 2016-09-09 13:41 ./usr/bin/mapsembler2_kissreads
-rwxr-xr-x root/root    128520 2016-09-09 13:41 ./usr/bin/mapsembler2_kissreads_graph
-rwxr-xr-x root/root    157324 2016-09-09 13:41 ./usr/bin/mapsembler_extend
-rwxr-xr-x root/root      9531 2016-09-09 13:41 ./usr/bin/run_mapsembler2_pipeline
drwxr-xr-x root/root         0 2016-09-09 13:41 ./usr/share/
drwxr-xr-x root/root         0 2016-09-09 13:41 ./usr/share/doc/
drwxr-xr-x root/root         0 2016-09-09 13:41 ./usr/share/doc/mapsembler2/
-rw-r--r-- root/root       218 2015-03-22 10:24 ./usr/share/doc/mapsembler2/README.Debian
-rw-r--r-- root/root       867 2016-09-09 13:41 ./usr/share/doc/mapsembler2/changelog.Debian.gz
-rw-r--r-- root/root      3954 2016-07-26 07:16 ./usr/share/doc/mapsembler2/copyright
drwxr-xr-x root/root         0 2016-09-09 13:41 ./usr/share/man/
drwxr-xr-x root/root         0 2016-09-09 13:41 ./usr/share/man/man1/
-rw-r--r-- root/root       698 2016-09-09 13:41 ./usr/share/man/man1/mapsembler2_extremities.1.gz
-rw-r--r-- root/root      1447 2016-09-09 13:41 ./usr/share/man/man1/mapsembler2_kissreads.1.gz
-rw-r--r-- root/root      1015 2016-09-09 13:41 ./usr/share/man/man1/mapsembler2_kissreads_graph.1.gz
-rw-r--r-- root/root      1103 2016-09-09 13:41 ./usr/share/man/man1/mapsembler_extend.1.gz
-rw-r--r-- root/root      1077 2016-09-09 13:41 ./usr/share/man/man1/run_mapsembler2_pipeline.1.gz


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| Post Build                                                                   |
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| Cleanup                                                                      |
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Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

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| Summary                                                                      |
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Build Architecture: armhf
Build-Space: 173404
Build-Time: 1959
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 367
Job: mapsembler2_2.2.3+dfsg-3
Machine Architecture: armhf
Package: mapsembler2
Package-Time: 2377
Source-Version: 2.2.3+dfsg-3
Space: 173404
Status: successful
Version: 2.2.3+dfsg-3
--------------------------------------------------------------------------------
Finished at 20160915-2003
Build needed 00:39:37, 173404k disc space