maffilter →
1.3.0+dfsg-1 →
armhf → 2018-05-07 10:47:21
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-01
+==============================================================================+
| maffilter 1.3.0+dfsg-1 (armhf) Mon, 07 May 2018 10:40:27 +0000 |
+==============================================================================+
Package: maffilter
Version: 1.3.0+dfsg-1
Source Version: 1.3.0+dfsg-1
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-cd4f2b49-8d94-4043-92eb-74f26fac3156' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [10.7 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [12.5 MB]
Fetched 23.2 MB in 11s (2153 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'maffilter' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/maffilter.git
Please use:
git clone https://salsa.debian.org/med-team/maffilter.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 78.7 MB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main maffilter 1.3.0+dfsg-1 (dsc) [2210 B]
Get:2 http://172.17.0.1/private buster-staging/main maffilter 1.3.0+dfsg-1 (tar) [78.7 MB]
Get:3 http://172.17.0.1/private buster-staging/main maffilter 1.3.0+dfsg-1 (diff) [3700 B]
Fetched 78.7 MB in 35s (2251 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/maffilter-VFNFan/maffilter-1.3.0+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/maffilter-VFNFan' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-pDi3Al/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-pDi3Al/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-pDi3Al/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-pDi3Al/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-pDi3Al/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-pDi3Al/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-pDi3Al/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-pDi3Al/apt_archive ./ Packages [432 B]
Fetched 2108 B in 0s (11.8 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates dbus dbus-user-session e2fsprogs-l10n libexpat1
libnss-systemd libpam-systemd libsasl2-modules libssl1.1 openssl
systemd-sysv
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 10 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-pDi3Al/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 15689 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 11~), cmake, texinfo, libbpp-phyl-omics-dev (>= 2.4.0), libboost-iostreams-dev (>= 1.54.0), zlib1g-dev, libbz2-dev
Filtered Build-Depends: debhelper (>= 11~), cmake, texinfo, libbpp-phyl-omics-dev (>= 2.4.0), libboost-iostreams-dev (>= 1.54.0), zlib1g-dev, libbz2-dev
dpkg-deb: building package 'sbuild-build-depends-maffilter-dummy' in '/<<BUILDDIR>>/resolver-pDi3Al/apt_archive/sbuild-build-depends-maffilter-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-maffilter-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-pDi3Al/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-pDi3Al/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-pDi3Al/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-pDi3Al/apt_archive ./ Sources [555 B]
Get:5 copy:/<<BUILDDIR>>/resolver-pDi3Al/apt_archive ./ Packages [634 B]
Fetched 2522 B in 0s (14.0 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install maffilter build dependencies (apt-based resolver)
---------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates dbus dbus-user-session e2fsprogs-l10n libnss-systemd
libpam-systemd libsasl2-modules libssl1.1 openssl systemd-sysv
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data
debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base
groff-base icu-devtools intltool-debian libarchive-zip-perl libarchive13
libboost-iostreams-dev libboost-iostreams1.62-dev libboost-iostreams1.62.0
libboost-regex1.62-dev libboost-regex1.62.0 libboost1.62-dev libbpp-core-dev
libbpp-core4 libbpp-phyl-dev libbpp-phyl-omics-dev libbpp-phyl-omics3
libbpp-phyl12 libbpp-seq-dev libbpp-seq-omics-dev libbpp-seq-omics3
libbpp-seq12 libbsd0 libbz2-dev libcroco3 libcurl3
libfile-stripnondeterminism-perl libglib2.0-0 libgssapi-krb5-2 libicu-dev
libicu57 libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0
liblzo2-2 libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5
librhash0 librtmp1 libsigsegv2 libssh2-1 libssl1.0.2 libtext-unidecode-perl
libtimedate-perl libtool libuv1 libxml-libxml-perl
libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml2 m4
man-db po-debconf tex-common texinfo ucf zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation cmake-doc ninja-build dh-make dwz gettext-doc libasprintf-dev
libgettextpo-dev groff lrzip libboost1.62-doc libboost-atomic1.62-dev
libboost-chrono1.62-dev libboost-context1.62-dev libboost-coroutine1.62-dev
libboost-date-time1.62-dev libboost-exception1.62-dev libboost-fiber1.62-dev
libboost-filesystem1.62-dev libboost-graph1.62-dev
libboost-graph-parallel1.62-dev libboost-locale1.62-dev libboost-log1.62-dev
libboost-math1.62-dev libboost-mpi1.62-dev libboost-mpi-python1.62-dev
libboost-program-options1.62-dev libboost-python1.62-dev
libboost-random1.62-dev libboost-serialization1.62-dev
libboost-signals1.62-dev libboost-system1.62-dev libboost-test1.62-dev
libboost-thread1.62-dev libboost-timer1.62-dev libboost-type-erasure1.62-dev
libboost-wave1.62-dev libboost1.62-tools-dev libmpfrc++-dev libntl-dev
krb5-doc krb5-user icu-doc libtool-doc gfortran | fortran95-compiler gcj-jdk
m4-doc apparmor less www-browser libmail-box-perl texlive-base
texlive-latex-base texlive-generic-recommended texinfo-doc-nonfree
texlive-fonts-recommended
Recommended packages:
curl | wget | lynx bzip2-doc libarchive-cpio-perl libglib2.0-data
shared-mime-info xdg-user-dirs krb5-locales publicsuffix libltdl-dev
libwww-perl libxml-sax-expat-perl libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data
debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base
groff-base icu-devtools intltool-debian libarchive-zip-perl libarchive13
libboost-iostreams-dev libboost-iostreams1.62-dev libboost-iostreams1.62.0
libboost-regex1.62-dev libboost-regex1.62.0 libboost1.62-dev libbpp-core-dev
libbpp-core4 libbpp-phyl-dev libbpp-phyl-omics-dev libbpp-phyl-omics3
libbpp-phyl12 libbpp-seq-dev libbpp-seq-omics-dev libbpp-seq-omics3
libbpp-seq12 libbsd0 libbz2-dev libcroco3 libcurl3
libfile-stripnondeterminism-perl libglib2.0-0 libgssapi-krb5-2 libicu-dev
libicu57 libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0
liblzo2-2 libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5
librhash0 librtmp1 libsigsegv2 libssh2-1 libssl1.0.2 libtext-unidecode-perl
libtimedate-perl libtool libuv1 libxml-libxml-perl
libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml2 m4
man-db po-debconf sbuild-build-depends-maffilter-dummy tex-common texinfo
ucf zlib1g-dev
0 upgraded, 76 newly installed, 0 to remove and 10 not upgraded.
Need to get 33.3 MB/58.6 MB of archives.
After this operation, 357 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-pDi3Al/apt_archive ./ sbuild-build-depends-maffilter-dummy 0.invalid.0 [924 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-10 [1005 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.5.0-1 [24.6 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.8.3-2 [1146 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf liblzo2-2 armhf 2.08-1.2 [47.6 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf tex-common all 6.09 [53.2 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf libssl1.0.2 armhf 1.0.2o-1 [888 kB]
Get:9 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.33-2 [234 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf libmagic1 armhf 1:5.33-2 [106 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.33-2 [64.7 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-6 [117 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.15.1-3.1 [736 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-6 [434 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf cmake-data all 3.11.1-1 [1386 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf libarchive13 armhf 3.2.2-3.1 [251 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf libnghttp2-14 armhf 1.31.1-1 [69.4 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf libpsl5 armhf 0.20.1-1 [51.4 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf libcurl3 armhf 7.58.0-2 [276 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf librhash0 armhf 1.3.6-2 [97.2 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf libuv1 armhf 1.18.0-3 [86.1 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf cmake armhf 3.11.1-1 [2501 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-2.1 [547 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 17 [16.5 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.60-1 [95.6 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.041-1 [19.9 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 0.041-1 [12.0 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.56.1-2 [2754 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-6 [1218 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf debhelper all 11.2.1 [1013 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf libboost1.62-dev armhf 1.62.0+dfsg-5+b2 [7004 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf libboost-regex1.62.0 armhf 1.62.0+dfsg-5+b2 [232 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf libboost-regex1.62-dev armhf 1.62.0+dfsg-5+b2 [325 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf libboost-iostreams1.62.0 armhf 1.62.0+dfsg-5+b2 [49.3 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf libboost-iostreams1.62-dev armhf 1.62.0+dfsg-5+b2 [58.5 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf libboost-iostreams-dev armhf 1.62.0.1+b8 [3694 B]
Get:44 http://172.17.0.1/private buster-staging/main armhf libbpp-core4 armhf 2.4.0-3 [486 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf libbpp-core-dev armhf 2.4.0-3 [883 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf libbpp-seq12 armhf 2.4.0-2 [405 kB]
Get:47 http://172.17.0.1/private buster-staging/main armhf libbpp-phyl12 armhf 2.4.0-2 [1298 kB]
Get:48 http://172.17.0.1/private buster-staging/main armhf libbpp-seq-dev armhf 2.4.0-2 [682 kB]
Get:49 http://172.17.0.1/private buster-staging/main armhf libbpp-phyl-dev armhf 2.4.0-2 [2855 kB]
Get:50 http://172.17.0.1/private buster-staging/main armhf libbpp-seq-omics3 armhf 2.4.0-2 [183 kB]
Get:51 http://172.17.0.1/private buster-staging/main armhf libbpp-phyl-omics3 armhf 2.4.0-2 [55.1 kB]
Get:52 http://172.17.0.1/private buster-staging/main armhf libbpp-seq-omics-dev armhf 2.4.0-2 [366 kB]
Get:53 http://172.17.0.1/private buster-staging/main armhf libbpp-phyl-omics-dev armhf 2.4.0-2 [125 kB]
Get:54 http://172.17.0.1/private buster-staging/main armhf libbz2-dev armhf 1.0.6-8.1 [26.9 kB]
Get:55 http://172.17.0.1/private buster-staging/main armhf libtext-unidecode-perl all 1.30-1 [103 kB]
Get:56 http://172.17.0.1/private buster-staging/main armhf libxml-namespacesupport-perl all 1.12-1 [14.8 kB]
Get:57 http://172.17.0.1/private buster-staging/main armhf libxml-sax-base-perl all 1.09-1 [20.4 kB]
Get:58 http://172.17.0.1/private buster-staging/main armhf libxml-sax-perl all 1.00+dfsg-1 [58.6 kB]
Get:59 http://172.17.0.1/private buster-staging/main armhf libxml-libxml-perl armhf 2.0128+dfsg-5 [318 kB]
Get:60 http://172.17.0.1/private buster-staging/main armhf texinfo armhf 6.5.0.dfsg.1-2 [1331 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 33.3 MB in 9s (3780 kB/s)
Selecting previously unselected package libbsd0:armhf.
(Reading database ... 15689 files and directories currently installed.)
Preparing to unpack .../00-libbsd0_0.8.7-1_armhf.deb ...
Unpacking libbsd0:armhf (0.8.7-1) ...
Selecting previously unselected package bsdmainutils.
Preparing to unpack .../01-bsdmainutils_11.1.2_armhf.deb ...
Unpacking bsdmainutils (11.1.2) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../02-groff-base_1.22.3-10_armhf.deb ...
Unpacking groff-base (1.22.3-10) ...
Selecting previously unselected package libpipeline1:armhf.
Preparing to unpack .../03-libpipeline1_1.5.0-1_armhf.deb ...
Unpacking libpipeline1:armhf (1.5.0-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../04-man-db_2.8.3-2_armhf.deb ...
Unpacking man-db (2.8.3-2) ...
Selecting previously unselected package liblzo2-2:armhf.
Preparing to unpack .../05-liblzo2-2_2.08-1.2_armhf.deb ...
Unpacking liblzo2-2:armhf (2.08-1.2) ...
Selecting previously unselected package ucf.
Preparing to unpack .../06-ucf_3.0038_all.deb ...
Moving old data out of the way
Unpacking ucf (3.0038) ...
Selecting previously unselected package tex-common.
Preparing to unpack .../07-tex-common_6.09_all.deb ...
Unpacking tex-common (6.09) ...
Selecting previously unselected package libssl1.0.2:armhf.
Preparing to unpack .../08-libssl1.0.2_1.0.2o-1_armhf.deb ...
Unpacking libssl1.0.2:armhf (1.0.2o-1) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../09-libmagic-mgc_1%3a5.33-2_armhf.deb ...
Unpacking libmagic-mgc (1:5.33-2) ...
Selecting previously unselected package libmagic1:armhf.
Preparing to unpack .../10-libmagic1_1%3a5.33-2_armhf.deb ...
Unpacking libmagic1:armhf (1:5.33-2) ...
Selecting previously unselected package file.
Preparing to unpack .../11-file_1%3a5.33-2_armhf.deb ...
Unpacking file (1:5.33-2) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../12-gettext-base_0.19.8.1-6_armhf.deb ...
Unpacking gettext-base (0.19.8.1-6) ...
Selecting previously unselected package libkeyutils1:armhf.
Preparing to unpack .../13-libkeyutils1_1.5.9-9.2_armhf.deb ...
Unpacking libkeyutils1:armhf (1.5.9-9.2) ...
Selecting previously unselected package libsigsegv2:armhf.
Preparing to unpack .../14-libsigsegv2_2.12-2_armhf.deb ...
Unpacking libsigsegv2:armhf (2.12-2) ...
Selecting previously unselected package m4.
Preparing to unpack .../15-m4_1.4.18-1_armhf.deb ...
Unpacking m4 (1.4.18-1) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../16-autoconf_2.69-11_all.deb ...
Unpacking autoconf (2.69-11) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../17-autotools-dev_20180224.1_all.deb ...
Unpacking autotools-dev (20180224.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../18-automake_1%3a1.15.1-3.1_all.deb ...
Unpacking automake (1:1.15.1-3.1) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../19-autopoint_0.19.8.1-6_all.deb ...
Unpacking autopoint (0.19.8.1-6) ...
Selecting previously unselected package cmake-data.
Preparing to unpack .../20-cmake-data_3.11.1-1_all.deb ...
Unpacking cmake-data (3.11.1-1) ...
Selecting previously unselected package libicu57:armhf.
Preparing to unpack .../21-libicu57_57.1-9_armhf.deb ...
Unpacking libicu57:armhf (57.1-9) ...
Selecting previously unselected package libxml2:armhf.
Preparing to unpack .../22-libxml2_2.9.4+dfsg1-6.1_armhf.deb ...
Unpacking libxml2:armhf (2.9.4+dfsg1-6.1) ...
Selecting previously unselected package libarchive13:armhf.
Preparing to unpack .../23-libarchive13_3.2.2-3.1_armhf.deb ...
Unpacking libarchive13:armhf (3.2.2-3.1) ...
Selecting previously unselected package libkrb5support0:armhf.
Preparing to unpack .../24-libkrb5support0_1.16-2_armhf.deb ...
Unpacking libkrb5support0:armhf (1.16-2) ...
Selecting previously unselected package libk5crypto3:armhf.
Preparing to unpack .../25-libk5crypto3_1.16-2_armhf.deb ...
Unpacking libk5crypto3:armhf (1.16-2) ...
Selecting previously unselected package libkrb5-3:armhf.
Preparing to unpack .../26-libkrb5-3_1.16-2_armhf.deb ...
Unpacking libkrb5-3:armhf (1.16-2) ...
Selecting previously unselected package libgssapi-krb5-2:armhf.
Preparing to unpack .../27-libgssapi-krb5-2_1.16-2_armhf.deb ...
Unpacking libgssapi-krb5-2:armhf (1.16-2) ...
Selecting previously unselected package libnghttp2-14:armhf.
Preparing to unpack .../28-libnghttp2-14_1.31.1-1_armhf.deb ...
Unpacking libnghttp2-14:armhf (1.31.1-1) ...
Selecting previously unselected package libpsl5:armhf.
Preparing to unpack .../29-libpsl5_0.20.1-1_armhf.deb ...
Unpacking libpsl5:armhf (0.20.1-1) ...
Selecting previously unselected package librtmp1:armhf.
Preparing to unpack .../30-librtmp1_2.4+20151223.gitfa8646d.1-1_armhf.deb ...
Unpacking librtmp1:armhf (2.4+20151223.gitfa8646d.1-1) ...
Selecting previously unselected package libssh2-1:armhf.
Preparing to unpack .../31-libssh2-1_1.8.0-1_armhf.deb ...
Unpacking libssh2-1:armhf (1.8.0-1) ...
Selecting previously unselected package libcurl3:armhf.
Preparing to unpack .../32-libcurl3_7.58.0-2_armhf.deb ...
Unpacking libcurl3:armhf (7.58.0-2) ...
Selecting previously unselected package libjsoncpp1:armhf.
Preparing to unpack .../33-libjsoncpp1_1.7.4-3_armhf.deb ...
Unpacking libjsoncpp1:armhf (1.7.4-3) ...
Selecting previously unselected package librhash0:armhf.
Preparing to unpack .../34-librhash0_1.3.6-2_armhf.deb ...
Unpacking librhash0:armhf (1.3.6-2) ...
Selecting previously unselected package libuv1:armhf.
Preparing to unpack .../35-libuv1_1.18.0-3_armhf.deb ...
Unpacking libuv1:armhf (1.18.0-3) ...
Selecting previously unselected package cmake.
Preparing to unpack .../36-cmake_3.11.1-1_armhf.deb ...
Unpacking cmake (3.11.1-1) ...
Selecting previously unselected package libtool.
Preparing to unpack .../37-libtool_2.4.6-2.1_all.deb ...
Unpacking libtool (2.4.6-2.1) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../38-dh-autoreconf_17_all.deb ...
Unpacking dh-autoreconf (17) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../39-libarchive-zip-perl_1.60-1_all.deb ...
Unpacking libarchive-zip-perl (1.60-1) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../40-libfile-stripnondeterminism-perl_0.041-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (0.041-1) ...
Selecting previously unselected package libtimedate-perl.
Preparing to unpack .../41-libtimedate-perl_2.3000-2_all.deb ...
Unpacking libtimedate-perl (2.3000-2) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../42-dh-strip-nondeterminism_0.041-1_all.deb ...
Unpacking dh-strip-nondeterminism (0.041-1) ...
Selecting previously unselected package libglib2.0-0:armhf.
Preparing to unpack .../43-libglib2.0-0_2.56.1-2_armhf.deb ...
Unpacking libglib2.0-0:armhf (2.56.1-2) ...
Selecting previously unselected package libcroco3:armhf.
Preparing to unpack .../44-libcroco3_0.6.12-2_armhf.deb ...
Unpacking libcroco3:armhf (0.6.12-2) ...
Selecting previously unselected package gettext.
Preparing to unpack .../45-gettext_0.19.8.1-6_armhf.deb ...
Unpacking gettext (0.19.8.1-6) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../46-intltool-debian_0.35.0+20060710.4_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.4) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../47-po-debconf_1.0.20_all.deb ...
Unpacking po-debconf (1.0.20) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../48-debhelper_11.2.1_all.deb ...
Unpacking debhelper (11.2.1) ...
Selecting previously unselected package icu-devtools.
Preparing to unpack .../49-icu-devtools_57.1-9_armhf.deb ...
Unpacking icu-devtools (57.1-9) ...
Selecting previously unselected package libboost1.62-dev:armhf.
Preparing to unpack .../50-libboost1.62-dev_1.62.0+dfsg-5+b2_armhf.deb ...
Unpacking libboost1.62-dev:armhf (1.62.0+dfsg-5+b2) ...
Selecting previously unselected package libboost-regex1.62.0:armhf.
Preparing to unpack .../51-libboost-regex1.62.0_1.62.0+dfsg-5+b2_armhf.deb ...
Unpacking libboost-regex1.62.0:armhf (1.62.0+dfsg-5+b2) ...
Selecting previously unselected package libicu-dev.
Preparing to unpack .../52-libicu-dev_57.1-9_armhf.deb ...
Unpacking libicu-dev (57.1-9) ...
Selecting previously unselected package libboost-regex1.62-dev:armhf.
Preparing to unpack .../53-libboost-regex1.62-dev_1.62.0+dfsg-5+b2_armhf.deb ...
Unpacking libboost-regex1.62-dev:armhf (1.62.0+dfsg-5+b2) ...
Selecting previously unselected package libboost-iostreams1.62.0:armhf.
Preparing to unpack .../54-libboost-iostreams1.62.0_1.62.0+dfsg-5+b2_armhf.deb ...
Unpacking libboost-iostreams1.62.0:armhf (1.62.0+dfsg-5+b2) ...
Selecting previously unselected package libboost-iostreams1.62-dev:armhf.
Preparing to unpack .../55-libboost-iostreams1.62-dev_1.62.0+dfsg-5+b2_armhf.deb ...
Unpacking libboost-iostreams1.62-dev:armhf (1.62.0+dfsg-5+b2) ...
Selecting previously unselected package libboost-iostreams-dev:armhf.
Preparing to unpack .../56-libboost-iostreams-dev_1.62.0.1+b8_armhf.deb ...
Unpacking libboost-iostreams-dev:armhf (1.62.0.1+b8) ...
Selecting previously unselected package libbpp-core4:armhf.
Preparing to unpack .../57-libbpp-core4_2.4.0-3_armhf.deb ...
Unpacking libbpp-core4:armhf (2.4.0-3) ...
Selecting previously unselected package libbpp-core-dev.
Preparing to unpack .../58-libbpp-core-dev_2.4.0-3_armhf.deb ...
Unpacking libbpp-core-dev (2.4.0-3) ...
Selecting previously unselected package libbpp-seq12:armhf.
Preparing to unpack .../59-libbpp-seq12_2.4.0-2_armhf.deb ...
Unpacking libbpp-seq12:armhf (2.4.0-2) ...
Selecting previously unselected package libbpp-phyl12:armhf.
Preparing to unpack .../60-libbpp-phyl12_2.4.0-2_armhf.deb ...
Unpacking libbpp-phyl12:armhf (2.4.0-2) ...
Selecting previously unselected package libbpp-seq-dev.
Preparing to unpack .../61-libbpp-seq-dev_2.4.0-2_armhf.deb ...
Unpacking libbpp-seq-dev (2.4.0-2) ...
Selecting previously unselected package libbpp-phyl-dev.
Preparing to unpack .../62-libbpp-phyl-dev_2.4.0-2_armhf.deb ...
Unpacking libbpp-phyl-dev (2.4.0-2) ...
Selecting previously unselected package libbpp-seq-omics3:armhf.
Preparing to unpack .../63-libbpp-seq-omics3_2.4.0-2_armhf.deb ...
Unpacking libbpp-seq-omics3:armhf (2.4.0-2) ...
Selecting previously unselected package libbpp-phyl-omics3:armhf.
Preparing to unpack .../64-libbpp-phyl-omics3_2.4.0-2_armhf.deb ...
Unpacking libbpp-phyl-omics3:armhf (2.4.0-2) ...
Selecting previously unselected package libbpp-seq-omics-dev.
Preparing to unpack .../65-libbpp-seq-omics-dev_2.4.0-2_armhf.deb ...
Unpacking libbpp-seq-omics-dev (2.4.0-2) ...
Selecting previously unselected package libbpp-phyl-omics-dev.
Preparing to unpack .../66-libbpp-phyl-omics-dev_2.4.0-2_armhf.deb ...
Unpacking libbpp-phyl-omics-dev (2.4.0-2) ...
Selecting previously unselected package libbz2-dev:armhf.
Preparing to unpack .../67-libbz2-dev_1.0.6-8.1_armhf.deb ...
Unpacking libbz2-dev:armhf (1.0.6-8.1) ...
Selecting previously unselected package libtext-unidecode-perl.
Preparing to unpack .../68-libtext-unidecode-perl_1.30-1_all.deb ...
Unpacking libtext-unidecode-perl (1.30-1) ...
Selecting previously unselected package libxml-namespacesupport-perl.
Preparing to unpack .../69-libxml-namespacesupport-perl_1.12-1_all.deb ...
Unpacking libxml-namespacesupport-perl (1.12-1) ...
Selecting previously unselected package libxml-sax-base-perl.
Preparing to unpack .../70-libxml-sax-base-perl_1.09-1_all.deb ...
Unpacking libxml-sax-base-perl (1.09-1) ...
Selecting previously unselected package libxml-sax-perl.
Preparing to unpack .../71-libxml-sax-perl_1.00+dfsg-1_all.deb ...
Unpacking libxml-sax-perl (1.00+dfsg-1) ...
Selecting previously unselected package libxml-libxml-perl.
Preparing to unpack .../72-libxml-libxml-perl_2.0128+dfsg-5_armhf.deb ...
Unpacking libxml-libxml-perl (2.0128+dfsg-5) ...
Selecting previously unselected package texinfo.
Preparing to unpack .../73-texinfo_6.5.0.dfsg.1-2_armhf.deb ...
Unpacking texinfo (6.5.0.dfsg.1-2) ...
Selecting previously unselected package zlib1g-dev:armhf.
Preparing to unpack .../74-zlib1g-dev_1%3a1.2.8.dfsg-5_armhf.deb ...
Unpacking zlib1g-dev:armhf (1:1.2.8.dfsg-5) ...
Selecting previously unselected package sbuild-build-depends-maffilter-dummy.
Preparing to unpack .../75-sbuild-build-depends-maffilter-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-maffilter-dummy (0.invalid.0) ...
Setting up libbz2-dev:armhf (1.0.6-8.1) ...
Setting up libarchive-zip-perl (1.60-1) ...
Setting up libnghttp2-14:armhf (1.31.1-1) ...
Setting up libxml-namespacesupport-perl (1.12-1) ...
Setting up libboost1.62-dev:armhf (1.62.0+dfsg-5+b2) ...
Setting up libtimedate-perl (2.3000-2) ...
Setting up libsigsegv2:armhf (2.12-2) ...
Setting up libuv1:armhf (1.18.0-3) ...
Setting up libpsl5:armhf (0.20.1-1) ...
Setting up groff-base (1.22.3-10) ...
Setting up libglib2.0-0:armhf (2.56.1-2) ...
No schema files found: removed existing output file.
Setting up libtext-unidecode-perl (1.30-1) ...
Setting up gettext-base (0.19.8.1-6) ...
Setting up cmake-data (3.11.1-1) ...
Setting up libpipeline1:armhf (1.5.0-1) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-1) ...
Setting up m4 (1.4.18-1) ...
Setting up libbpp-core4:armhf (2.4.0-3) ...
Setting up libicu57:armhf (57.1-9) ...
Setting up libbsd0:armhf (0.8.7-1) ...
Setting up ucf (3.0038) ...
Setting up libxml2:armhf (2.9.4+dfsg1-6.1) ...
Setting up libmagic-mgc (1:5.33-2) ...
Setting up libmagic1:armhf (1:5.33-2) ...
Setting up librhash0:armhf (1.3.6-2) ...
Setting up libcroco3:armhf (0.6.12-2) ...
Setting up libboost-iostreams1.62.0:armhf (1.62.0+dfsg-5+b2) ...
Setting up libssl1.0.2:armhf (1.0.2o-1) ...
Setting up libxml-sax-base-perl (1.09-1) ...
Setting up libssh2-1:armhf (1.8.0-1) ...
Processing triggers for libc-bin (2.27-3+rpi1) ...
Setting up autotools-dev (20180224.1) ...
Setting up icu-devtools (57.1-9) ...
Setting up libkeyutils1:armhf (1.5.9-9.2) ...
Setting up libbpp-seq12:armhf (2.4.0-2) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up autopoint (0.19.8.1-6) ...
Setting up libbpp-phyl12:armhf (2.4.0-2) ...
Setting up liblzo2-2:armhf (2.08-1.2) ...
Setting up zlib1g-dev:armhf (1:1.2.8.dfsg-5) ...
Setting up libfile-stripnondeterminism-perl (0.041-1) ...
Setting up libxml-sax-perl (1.00+dfsg-1) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version
Setting up libjsoncpp1:armhf (1.7.4-3) ...
Setting up tex-common (6.09) ...
update-language: texlive-base not installed and configured, doing nothing!
Setting up gettext (0.19.8.1-6) ...
Setting up libarchive13:armhf (3.2.2-3.1) ...
Setting up libbpp-core-dev (2.4.0-3) ...
Setting up libboost-regex1.62.0:armhf (1.62.0+dfsg-5+b2) ...
Setting up autoconf (2.69-11) ...
Setting up libicu-dev (57.1-9) ...
Setting up file (1:5.33-2) ...
Setting up libkrb5support0:armhf (1.16-2) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up libbpp-seq-omics3:armhf (2.4.0-2) ...
Setting up automake (1:1.15.1-3.1) ...
update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode
Setting up man-db (2.8.3-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libxml-libxml-perl (2.0128+dfsg-5) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version
Setting up libtool (2.4.6-2.1) ...
Setting up libk5crypto3:armhf (1.16-2) ...
Setting up libbpp-seq-dev (2.4.0-2) ...
Setting up po-debconf (1.0.20) ...
Setting up libboost-regex1.62-dev:armhf (1.62.0+dfsg-5+b2) ...
Setting up libbpp-phyl-omics3:armhf (2.4.0-2) ...
Setting up libboost-iostreams1.62-dev:armhf (1.62.0+dfsg-5+b2) ...
Setting up libbpp-phyl-dev (2.4.0-2) ...
Setting up libboost-iostreams-dev:armhf (1.62.0.1+b8) ...
Setting up libbpp-seq-omics-dev (2.4.0-2) ...
Setting up libkrb5-3:armhf (1.16-2) ...
Setting up texinfo (6.5.0.dfsg.1-2) ...
Setting up libbpp-phyl-omics-dev (2.4.0-2) ...
Setting up libgssapi-krb5-2:armhf (1.16-2) ...
Setting up libcurl3:armhf (7.58.0-2) ...
Setting up cmake (3.11.1-1) ...
Setting up dh-strip-nondeterminism (0.041-1) ...
Setting up debhelper (11.2.1) ...
Setting up dh-autoreconf (17) ...
Setting up sbuild-build-depends-maffilter-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.27-3+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.4.0-119-generic armhf (armv8l)
Toolchain package versions: binutils_2.30-15+rpi1 dpkg-dev_1.19.0.5 g++-7_7.3.0-12 gcc-7_7.3.0-12 libc6-dev_2.27-3+rpi1 libstdc++-7-dev_7.3.0-12 libstdc++6_8-20180414-1+rpi1 linux-libc-dev_4.15.17-1+rpi1
Package versions: adduser_3.117 apt_1.6.1 autoconf_2.69-11 automake_1:1.15.1-3.1 autopoint_0.19.8.1-6 autotools-dev_20180224.1 base-files_10.1+rpi1 base-passwd_3.5.45 bash_4.4.18-2+b1 binutils_2.30-15+rpi1 binutils-arm-linux-gnueabihf_2.30-15+rpi1 binutils-common_2.30-15+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.31.1-0.5 build-essential_12.4+b1 bzip2_1.0.6-8.1 ca-certificates_20170717 cmake_3.11.1-1 cmake-data_3.11.1-1 coreutils_8.28-1 cpio_2.12+dfsg-6 cpp_4:7.2.0-1d1 cpp-7_7.3.0-12 dash_0.5.8-2.10 dbus_1.12.6-2 dbus-user-session_1.12.6-2 debconf_1.5.66 debhelper_11.2.1 debianutils_4.8.4 dh-autoreconf_17 dh-strip-nondeterminism_0.041-1 diffutils_1:3.6-1 dirmngr_2.2.5-1 dmsetup_2:1.02.145-4.1 dpkg_1.19.0.5 dpkg-dev_1.19.0.5 e2fslibs_1.44.1-2 e2fsprogs_1.44.1-2 e2fsprogs-l10n_1.44.1-2 fakeroot_1.22-2 fdisk_2.31.1-0.5 file_1:5.33-2 findutils_4.6.0+git+20171230-2 g++_4:7.2.0-1d1 g++-7_7.3.0-12 gcc_4:7.2.0-1d1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.4-2+rpi1 gcc-5-base_5.5.0-8 gcc-7_7.3.0-12 gcc-7-base_7.3.0-12 gcc-8-base_8-20180414-1+rpi1 gettext_0.19.8.1-6 gettext-base_0.19.8.1-6 gnupg_2.2.5-1 gnupg-agent_2.2.5-1 gnupg-l10n_2.2.5-1 gnupg-utils_2.2.5-1 gpg_2.2.5-1 gpg-agent_2.2.5-1 gpg-wks-client_2.2.5-1 gpg-wks-server_2.2.5-1 gpgconf_2.2.5-1 gpgsm_2.2.5-1 gpgv_2.2.5-1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5 hostname_3.20 icu-devtools_57.1-9 inetutils-ping_2:1.9.4-3 init-system-helpers_1.51 initramfs-tools_0.130 initramfs-tools-core_0.130 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-11+rpi1 kmod_25-1 libacl1_2.2.52-3 libapparmor1_2.12-4 libapt-pkg5.0_1.6.1 libarchive-zip-perl_1.60-1 libarchive13_3.2.2-3.1 libargon2-0_0~20161029-2 libasan4_7.3.0-12 libassuan0_2.5.1-2 libatomic1_8-20180414-1+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.8.2-1 libaudit1_1:2.8.2-1 libbinutils_2.30-15+rpi1 libblkid1_2.31.1-0.5 libboost-iostreams-dev_1.62.0.1+b8 libboost-iostreams1.62-dev_1.62.0+dfsg-5+b2 libboost-iostreams1.62.0_1.62.0+dfsg-5+b2 libboost-regex1.62-dev_1.62.0+dfsg-5+b2 libboost-regex1.62.0_1.62.0+dfsg-5+b2 libboost1.62-dev_1.62.0+dfsg-5+b2 libbpp-core-dev_2.4.0-3 libbpp-core4_2.4.0-3 libbpp-phyl-dev_2.4.0-2 libbpp-phyl-omics-dev_2.4.0-2 libbpp-phyl-omics3_2.4.0-2 libbpp-phyl12_2.4.0-2 libbpp-seq-dev_2.4.0-2 libbpp-seq-omics-dev_2.4.0-2 libbpp-seq-omics3_2.4.0-2 libbpp-seq12_2.4.0-2 libbsd0_0.8.7-1 libbz2-1.0_1.0.6-8.1 libbz2-dev_1.0.6-8.1 libc-bin_2.27-3+rpi1 libc-dev-bin_2.27-3+rpi1 libc6_2.27-3+rpi1 libc6-dev_2.27-3+rpi1 libcap-ng0_0.7.7-3.1+b1 libcap2_1:2.25-1.2 libcc1-0_8-20180414-1+rpi1 libcilkrts5_7.3.0-12 libcom-err2_1.44.1-2 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.2-1 libcryptsetup4_2:1.7.5-1 libcurl3_7.58.0-2 libdb5.3_5.3.28-13.1 libdbus-1-3_1.12.6-2 libdebconfclient0_0.243 libdevmapper1.02.1_2:1.02.145-4.1 libdpkg-perl_1.19.0.5 libdrm-common_2.4.91-2+rpi1 libdrm2_2.4.91-2+rpi1 libexpat1_2.2.5-3 libext2fs2_1.44.1-2 libfakeroot_1.22-2 libfdisk1_2.31.1-0.5 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.041-1 libgcc-7-dev_7.3.0-12 libgcc1_1:8-20180414-1+rpi1 libgcrypt20_1.8.2-2 libgdbm-compat4_1.14.1-6 libgdbm3_1.8.3-14 libgdbm5_1.14.1-6 libglib2.0-0_2.56.1-2 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.5.18-1 libgomp1_8-20180414-1+rpi1 libgpg-error0_1.29-4 libgssapi-krb5-2_1.16-2 libhogweed4_3.4-1 libicu-dev_57.1-9 libicu57_57.1-9 libidn11_1.33-2.2 libidn2-0_2.0.4-1.1 libip4tc0_1.6.2-1 libisl15_0.18-4 libjson-c3_0.12.1-1.3 libjsoncpp1_1.7.4-3 libk5crypto3_1.16-2 libkeyutils1_1.5.9-9.2 libklibc_2.0.4-11+rpi1 libkmod2_25-1 libkrb5-3_1.16-2 libkrb5support0_1.16-2 libksba8_1.3.5-2 libldap-2.4-2_2.4.45+dfsg-1 libldap-common_2.4.45+dfsg-1 liblz4-1_1.8.1.2-1+rpi1 liblzma5_5.2.2-1.3 liblzo2-2_2.08-1.2 libmagic-mgc_1:5.33-2 libmagic1_1:5.33-2 libmount1_2.31.1-0.5 libmpc3_1.1.0-1 libmpfr6_4.0.1-1 libncurses5_6.1-1 libncursesw5_6.1-1 libnettle6_3.4-1 libnghttp2-14_1.31.1-1 libnpth0_1.5-3 libnss-systemd_238-4 libp11-kit0_0.23.10-2 libpam-modules_1.1.8-3.7 libpam-modules-bin_1.1.8-3.7 libpam-runtime_1.1.8-3.7 libpam-systemd_238-4 libpam0g_1.1.8-3.7 libpcre3_2:8.39-9 libperl5.24_5.24.1-7 libperl5.26_5.26.2-2 libpipeline1_1.5.0-1 libplymouth4_0.9.3-2 libpng16-16_1.6.34-1 libprocps6_2:3.3.14-1 libpsl5_0.20.1-1 libreadline7_7.0-3 librhash0_1.3.6-2 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.27~101-g0780600+dfsg-3.1 libsasl2-modules_2.1.27~101-g0780600+dfsg-3.1 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3.1 libseccomp2_2.3.3-1 libselinux1_2.7-2 libsemanage-common_2.7-2 libsemanage1_2.7-2 libsepol1_2.7-1 libsigsegv2_2.12-2 libsmartcols1_2.31.1-0.5 libsqlite3-0_3.23.1-1 libss2_1.44.1-2 libssh2-1_1.8.0-1 libssl1.0.2_1.0.2o-1 libssl1.1_1.1.0h-2 libstdc++-7-dev_7.3.0-12 libstdc++6_8-20180414-1+rpi1 libsystemd0_238-4 libtasn1-6_4.13-2 libtext-unidecode-perl_1.30-1 libtimedate-perl_2.3000-2 libtinfo5_6.1-1 libtool_2.4.6-2.1 libubsan0_7.3.0-12 libudev1_238-4 libunistring2_0.9.8-1 libustr-1.0-1_1.0.4-6 libuuid1_2.31.1-0.5 libuv1_1.18.0-3 libxml-libxml-perl_2.0128+dfsg-5 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.00+dfsg-1 libxml2_2.9.4+dfsg1-6.1 libzstd1_1.3.3+dfsg-2+rpi1 linux-base_4.5 linux-libc-dev_4.15.17-1+rpi1 login_1:4.5-1 lsb-base_9.20170808+rpi1 m4_1.4.18-1 make_4.1-9.1 makedev_2.3.1-93 man-db_2.8.3-2 mawk_1.3.3-17 mount_2.31.1-0.5 multiarch-support_2.27-3+rpi1 nano_2.9.5-1 ncurses-base_6.1-1 ncurses-bin_6.1-1 netbase_5.4 openssl_1.1.0h-2 passwd_1:4.5-1 patch_2.7.6-2 perl_5.26.2-2 perl-base_5.26.2-2 perl-modules-5.24_5.24.1-7 perl-modules-5.26_5.26.2-3 pinentry-curses_1.1.0-1 plymouth_0.9.3-2 po-debconf_1.0.20 procps_2:3.3.14-1 raspbian-archive-keyring_20120528.2 readline-common_7.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-maffilter-dummy_0.invalid.0 sed_4.4-2 sensible-utils_0.0.12 systemd_238-4 systemd-sysv_238-4 sysvinit-utils_2.88dsf-59.10 tar_1.29b-2 tex-common_6.09 texinfo_6.5.0.dfsg.1-2 tzdata_2018d-1 ucf_3.0038 udev_238-4 util-linux_2.31.1-0.5 xz-utils_5.2.2-1.3 zlib1g_1:1.2.8.dfsg-5 zlib1g-dev_1:1.2.8.dfsg-5
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Tue May 1 05:52:20 2018 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tillea@rki.de"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./maffilter_1.3.0+dfsg-1.dsc
dpkg-source: info: extracting maffilter in /<<BUILDDIR>>/maffilter-1.3.0+dfsg
dpkg-source: info: unpacking maffilter_1.3.0+dfsg.orig.tar.xz
dpkg-source: info: unpacking maffilter_1.3.0+dfsg-1.debian.tar.xz
dpkg-source: info: applying fix_doc_compression.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-cd4f2b49-8d94-4043-92eb-74f26fac3156
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package maffilter
dpkg-buildpackage: info: source version 1.3.0+dfsg-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build maffilter-1.3.0+dfsg
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean
dh_clean
debian/rules build-arch
dh build-arch
dh_update_autotools_config -a
dh_autoreconf -a
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg'
dh_auto_configure -- -DCMAKE_BUILD_TYPE=RelWithDebInfo
cd obj-arm-linux-gnueabihf && cmake .. -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON "-GUnix Makefiles" -DCMAKE_BUILD_TYPE=RelWithDebInfo
-- The CXX compiler identification is GNU 7.3.0
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found /bin/gzip compression program, using file extension .gz
-- bpp-core 4.0.0 found:
-- static lib: /usr/lib/arm-linux-gnueabihf/libbpp-core.a
-- shared lib: /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.0.0
-- includes: /usr/include
-- bpp-seq 12.0.0 found:
-- static lib: /usr/lib/arm-linux-gnueabihf/libbpp-seq.a
-- shared lib: /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0
-- includes: /usr/include
-- bpp-seq-omics 3.0.0 found:
-- static lib: /usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.a
-- shared lib: /usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.so.3.0.0
-- includes: /usr/include
-- bpp-phyl 12.0.0 found:
-- static lib: /usr/lib/arm-linux-gnueabihf/libbpp-phyl.a
-- shared lib: /usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0
-- includes: /usr/include
-- bpp-phyl-omics 3.0.0 found:
-- static lib: /usr/lib/arm-linux-gnueabihf/libbpp-phyl-omics.a
-- shared lib: /usr/lib/arm-linux-gnueabihf/libbpp-phyl-omics.so.3.0.0
-- includes: /usr/include
-- Boost version: 1.62.0
-- Found the following Boost libraries:
-- iostreams
-- regex
-- Boost libraries found here:
includes: /usr/include
dynamic libraries: /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so;/usr/lib/arm-linux-gnueabihf/libboost_regex.so
-- Library z found here:
includes: /usr/include
dynamic libraries: /usr/lib/arm-linux-gnueabihf/libz.so
-- Library bz2 found here:
includes: /usr/include
dynamic libraries: /usr/lib/arm-linux-gnueabihf/libbz2.so
-- Found makeinfo as '/usr/bin/makeinfo': 'info' and 'html' target enabled (builds info/html doc)
-- Found texi2dvi: 'pdf' target enabled (builds pdf doc)
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_EXPORT_NO_PACKAGE_REGISTRY
-- Build files have been written to: /<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf
make[1]: Leaving directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg'
dh_auto_build -a
cd obj-arm-linux-gnueabihf && make -j4 -Oline
make[1]: Entering directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/cmake -H/<<BUILDDIR>>/maffilter-1.3.0+dfsg -B/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
make[1]: Leaving directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
make[1]: Entering directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_start /<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles /<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/progress.marks
make[1]: Leaving directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/Makefile2 all
make -f MafFilter/CMakeFiles/maffilter.dir/build.make MafFilter/CMakeFiles/maffilter.dir/depend
make -f doc/CMakeFiles/info.dir/build.make doc/CMakeFiles/info.dir/depend
make -f man/CMakeFiles/man.dir/build.make man/CMakeFiles/man.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/maffilter-1.3.0+dfsg /<<BUILDDIR>>/maffilter-1.3.0+dfsg/man /<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf/man /<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf/man/CMakeFiles/man.dir/DependInfo.cmake --color=
Scanning dependencies of target man
make[3]: Leaving directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/maffilter-1.3.0+dfsg /<<BUILDDIR>>/maffilter-1.3.0+dfsg/doc /<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf/doc /<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf/doc/CMakeFiles/info.dir/DependInfo.cmake --color=
Scanning dependencies of target info
make[3]: Leaving directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
make -f doc/CMakeFiles/info.dir/build.make doc/CMakeFiles/info.dir/build
make -f man/CMakeFiles/man.dir/build.make man/CMakeFiles/man.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/maffilter-1.3.0+dfsg /<<BUILDDIR>>/maffilter-1.3.0+dfsg/MafFilter /<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf/MafFilter /<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf/MafFilter/CMakeFiles/maffilter.dir/DependInfo.cmake --color=
Scanning dependencies of target maffilter
make[3]: Leaving directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
make -f MafFilter/CMakeFiles/maffilter.dir/build.make MafFilter/CMakeFiles/maffilter.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
[ 12%] Generating info page
make[3]: Leaving directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
[ 25%] Compressing manpage maffilter.1
make[3]: Leaving directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
[ 37%] Building CXX object MafFilter/CMakeFiles/maffilter.dir/MafFilter.cpp.o
make[3]: Leaving directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
[ 50%] Building CXX object MafFilter/CMakeFiles/maffilter.dir/OutputAsFeaturesMafIterator.cpp.o
make[3]: Leaving directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf/man && /bin/gzip -c -n -9 /<<BUILDDIR>>/maffilter-1.3.0+dfsg/man/maffilter.1 > /<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf/man/maffilter.1.gz
make[3]: Leaving directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
make[2]: Entering directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
[ 50%] Built target man
make[2]: Leaving directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
[ 62%] Building CXX object MafFilter/CMakeFiles/maffilter.dir/SystemCallMafIterator.cpp.o
make[3]: Leaving directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf/doc && /usr/bin/makeinfo --no-split -o /<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf/doc/maffilter.info /<<BUILDDIR>>/maffilter-1.3.0+dfsg/doc/maffilter.texi
make[3]: Leaving directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
[ 75%] Compressing info page
make[3]: Leaving directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf/doc && /bin/gzip -c -n -9 /<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf/doc/maffilter.info > /<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf/doc/maffilter.info.gz
make[3]: Leaving directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
make[2]: Entering directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
[ 75%] Built target info
make[2]: Leaving directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
[ 87%] Building CXX object MafFilter/CMakeFiles/maffilter.dir/TreeBuildingSystemCallMafIterator.cpp.o
make[3]: Leaving directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf/MafFilter && /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -O2 -g -DNDEBUG -o CMakeFiles/maffilter.dir/OutputAsFeaturesMafIterator.cpp.o -c /<<BUILDDIR>>/maffilter-1.3.0+dfsg/MafFilter/OutputAsFeaturesMafIterator.cpp
make[3]: Leaving directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf/MafFilter && /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -O2 -g -DNDEBUG -o CMakeFiles/maffilter.dir/SystemCallMafIterator.cpp.o -c /<<BUILDDIR>>/maffilter-1.3.0+dfsg/MafFilter/SystemCallMafIterator.cpp
make[3]: Leaving directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf/MafFilter && /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -O2 -g -DNDEBUG -o CMakeFiles/maffilter.dir/TreeBuildingSystemCallMafIterator.cpp.o -c /<<BUILDDIR>>/maffilter-1.3.0+dfsg/MafFilter/TreeBuildingSystemCallMafIterator.cpp
make[3]: Leaving directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf/MafFilter && /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -O2 -g -DNDEBUG -o CMakeFiles/maffilter.dir/MafFilter.cpp.o -c /<<BUILDDIR>>/maffilter-1.3.0+dfsg/MafFilter/MafFilter.cpp
In file included from /usr/include/c++/7/algorithm:62:0,
from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:47,
from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43,
from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43,
from /usr/include/Bpp/Seq/Io/Maf/MafIterator.h:43,
from /<<BUILDDIR>>/maffilter-1.3.0+dfsg/MafFilter/OutputAsFeaturesMafIterator.h:43,
from /<<BUILDDIR>>/maffilter-1.3.0+dfsg/MafFilter/MafFilter.cpp:47:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algo.h:61:0,
from /usr/include/c++/7/algorithm:62,
from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:47,
from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43,
from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43,
from /usr/include/Bpp/Seq/Io/Maf/MafIterator.h:43,
from /<<BUILDDIR>>/maffilter-1.3.0+dfsg/MafFilter/OutputAsFeaturesMafIterator.h:43,
from /<<BUILDDIR>>/maffilter-1.3.0+dfsg/MafFilter/MafFilter.cpp:47:
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:47,
from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43,
from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43,
from /usr/include/Bpp/Seq/Io/Maf/MafIterator.h:43,
from /<<BUILDDIR>>/maffilter-1.3.0+dfsg/MafFilter/OutputAsFeaturesMafIterator.h:43,
from /<<BUILDDIR>>/maffilter-1.3.0+dfsg/MafFilter/MafFilter.cpp:47:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In constructor 'bpp::SiteFrequencySpectrumMafStatistics::SiteFrequencySpectrumMafStatistics(const bpp::Alphabet*, const std::vector<double, std::allocator<double> >&, const std::vector<std::__cxx11::basic_string<char> >&, std::__cxx11::string)':
/usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
[100%] Linking CXX executable maffilter
make[3]: Leaving directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf/MafFilter && /usr/bin/cmake -E cmake_link_script CMakeFiles/maffilter.dir/link.txt --verbose=1
/usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/maffilter.dir/MafFilter.cpp.o CMakeFiles/maffilter.dir/OutputAsFeaturesMafIterator.cpp.o CMakeFiles/maffilter.dir/SystemCallMafIterator.cpp.o CMakeFiles/maffilter.dir/TreeBuildingSystemCallMafIterator.cpp.o -o maffilter /usr/lib/arm-linux-gnueabihf/libbpp-phyl-omics.so.3.0.0 -lboost_iostreams -lboost_regex -lz -lbz2 /usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.so.3.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.0.0
make[3]: Leaving directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
make[2]: Entering directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
[100%] Built target maffilter
make[2]: Leaving directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
make[1]: Entering directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_start /<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 0
make[1]: Leaving directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
dh_auto_test -a
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch
dh_testroot -a
dh_prep -a
dh_auto_install -a
cd obj-arm-linux-gnueabihf && make -j4 -Oline install DESTDIR=/<<BUILDDIR>>/maffilter-1.3.0\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no
make[1]: Entering directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/cmake -H/<<BUILDDIR>>/maffilter-1.3.0+dfsg -B/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
make[1]: Leaving directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
make[1]: Entering directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_start /<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles /<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/progress.marks
make[1]: Leaving directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/Makefile2 all
make -f MafFilter/CMakeFiles/maffilter.dir/build.make MafFilter/CMakeFiles/maffilter.dir/depend
make -f doc/CMakeFiles/info.dir/build.make doc/CMakeFiles/info.dir/depend
make -f man/CMakeFiles/man.dir/build.make man/CMakeFiles/man.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/maffilter-1.3.0+dfsg /<<BUILDDIR>>/maffilter-1.3.0+dfsg/doc /<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf/doc /<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf/doc/CMakeFiles/info.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
make -f doc/CMakeFiles/info.dir/build.make doc/CMakeFiles/info.dir/build
cd /<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/maffilter-1.3.0+dfsg /<<BUILDDIR>>/maffilter-1.3.0+dfsg/man /<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf/man /<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf/man/CMakeFiles/man.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
make -f man/CMakeFiles/man.dir/build.make man/CMakeFiles/man.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/maffilter-1.3.0+dfsg /<<BUILDDIR>>/maffilter-1.3.0+dfsg/MafFilter /<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf/MafFilter /<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf/MafFilter/CMakeFiles/maffilter.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
make -f MafFilter/CMakeFiles/maffilter.dir/build.make MafFilter/CMakeFiles/maffilter.dir/build
make[3]: Nothing to be done for 'doc/CMakeFiles/info.dir/build'.
make[3]: Nothing to be done for 'man/CMakeFiles/man.dir/build'.
make[3]: Nothing to be done for 'MafFilter/CMakeFiles/maffilter.dir/build'.
make[2]: Entering directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
[ 37%] Built target man
make[2]: Leaving directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
make[2]: Entering directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
[ 37%] Built target info
make[2]: Leaving directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
make[2]: Entering directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
[100%] Built target maffilter
make[2]: Leaving directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
make[1]: Entering directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_start /<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 0
make[1]: Leaving directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/Makefile2 preinstall
make[2]: Nothing to be done for 'preinstall'.
make[1]: Entering directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
Install the project...
make[1]: Leaving directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
make[1]: Entering directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "RelWithDebInfo"
-- Installing: /<<BUILDDIR>>/maffilter-1.3.0+dfsg/debian/tmp/usr/bin/maffilter
-- Installing: /<<BUILDDIR>>/maffilter-1.3.0+dfsg/debian/tmp/usr/share/info/maffilter.info.gz
-- Installing: /<<BUILDDIR>>/maffilter-1.3.0+dfsg/debian/tmp/usr/share/man/man1/maffilter.1.gz
make[1]: Leaving directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg/obj-arm-linux-gnueabihf'
dh_install -a
dh_installdocs -a
dh_installchangelogs -a
dh_installexamples -a
dh_installman -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
debian/rules override_dh_fixperms
make[1]: Entering directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg'
dh_fixperms
find debian/*/usr/share -name "*.bpp" -executable -exec chmod -x \{\} \;
make[1]: Leaving directory '/<<BUILDDIR>>/maffilter-1.3.0+dfsg'
dh_missing -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: debian/maffilter/usr/bin/maffilter contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/maffilter/usr/bin/maffilter was not linked against libbz2.so.1.0 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/maffilter/usr/bin/maffilter was not linked against libz.so.1 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/maffilter/usr/bin/maffilter was not linked against libboost_regex.so.1.62.0 (it uses none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'maffilter' in '../maffilter_1.3.0+dfsg-1_armhf.deb'.
dpkg-deb: building package 'maffilter-dbgsym' in '../maffilter-dbgsym_1.3.0+dfsg-1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../maffilter_1.3.0+dfsg-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build maffilter-1.3.0+dfsg
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2018-05-07T10:47:18Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
maffilter_1.3.0+dfsg-1_armhf.changes:
-------------------------------------
Format: 1.8
Date: Mon, 30 Apr 2018 11:57:36 +0200
Source: maffilter
Binary: maffilter maffilter-examples
Architecture: armhf
Version: 1.3.0+dfsg-1
Distribution: buster-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Julien Dutheil <julien.dutheil@univ-montp2.fr>
Description:
maffilter - process genome alignment in the Multiple Alignment Format
maffilter-examples - process genome alignment in the Multiple Alignment Format (exampl
Closes: 896486
Changes:
maffilter (1.3.0+dfsg-1) unstable; urgency=medium
.
[ Steffen Moeller ]
* Added ref to OMICtools registry
(bio.tools and RRID entries not available)
.
[ Julien Y. Dutheil ]
* New upstream version (Closes: #896486).
* Standards-Version: 4.1.4
* debhelper 11
* Updated Vcs-Browser and Vcs-Git
* Updated Homepage
Checksums-Sha1:
5d1d2fc67c08c56d4f4597fca061b6e447857bc2 2269900 maffilter-dbgsym_1.3.0+dfsg-1_armhf.deb
9182e675d70eeb5a1506a1c9d7c6c020d6ef4232 6409 maffilter_1.3.0+dfsg-1_armhf.buildinfo
5cbce9a88ffcb3dbf8dd72bfbda77f1af87f67d0 171976 maffilter_1.3.0+dfsg-1_armhf.deb
Checksums-Sha256:
fbe2dac7e716adcf732ce9d808afad195779ba7c2c9a74a4c323c20283b5bb82 2269900 maffilter-dbgsym_1.3.0+dfsg-1_armhf.deb
a797efff834d17e122c6b4bcdafc0175d9a167c7c857d01dca9301011878221a 6409 maffilter_1.3.0+dfsg-1_armhf.buildinfo
b6c69ce200b6f44c6e32276bf1496bbcac6550a455501c24bb3165c1c7e35351 171976 maffilter_1.3.0+dfsg-1_armhf.deb
Files:
33f7f11214764eed552f8e50cc6ff225 2269900 debug optional maffilter-dbgsym_1.3.0+dfsg-1_armhf.deb
21458507fa9ef58e70933fccacde0070 6409 science optional maffilter_1.3.0+dfsg-1_armhf.buildinfo
be8d80eefda9f511e0b76b556bc6264a 171976 science optional maffilter_1.3.0+dfsg-1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
maffilter-dbgsym_1.3.0+dfsg-1_armhf.deb
---------------------------------------
new Debian package, version 2.0.
size 2269900 bytes: control archive=540 bytes.
389 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: maffilter-dbgsym
Source: maffilter
Version: 1.3.0+dfsg-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 2453
Depends: maffilter (= 1.3.0+dfsg-1)
Section: debug
Priority: optional
Description: debug symbols for maffilter
Build-Ids: 1980e64e3bcfb046ddf7bab000a47306de9a65af
drwxr-xr-x root/root 0 2018-04-30 09:57 ./
drwxr-xr-x root/root 0 2018-04-30 09:57 ./usr/
drwxr-xr-x root/root 0 2018-04-30 09:57 ./usr/lib/
drwxr-xr-x root/root 0 2018-04-30 09:57 ./usr/lib/debug/
drwxr-xr-x root/root 0 2018-04-30 09:57 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2018-04-30 09:57 ./usr/lib/debug/.build-id/19/
-rw-r--r-- root/root 2501084 2018-04-30 09:57 ./usr/lib/debug/.build-id/19/80e64e3bcfb046ddf7bab000a47306de9a65af.debug
drwxr-xr-x root/root 0 2018-04-30 09:57 ./usr/share/
drwxr-xr-x root/root 0 2018-04-30 09:57 ./usr/share/doc/
lrwxrwxrwx root/root 0 2018-04-30 09:57 ./usr/share/doc/maffilter-dbgsym -> maffilter
maffilter_1.3.0+dfsg-1_armhf.deb
--------------------------------
new Debian package, version 2.0.
size 171976 bytes: control archive=1212 bytes.
1329 bytes, 25 lines control
470 bytes, 7 lines md5sums
Package: maffilter
Version: 1.3.0+dfsg-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 625
Depends: libboost-iostreams1.62.0, libboost-regex1.62.0, libbpp-core4, libbpp-phyl-omics3, libbpp-phyl12, libbpp-seq-omics3, libbpp-seq12, libbz2-1.0, libc6 (>= 2.4), libgcc1 (>= 1:3.5), libstdc++6 (>= 5.2), zlib1g (>= 1:1.1.4)
Suggests: maffilter-examples
Section: science
Priority: optional
Homepage: https://jydu.github.io/maffilter/
Description: process genome alignment in the Multiple Alignment Format
MafFilter applies a series of "filters" to a MAF file, in order to
clean it, extract data and computer statistics while keeping track of
the associated meta-data such as genome coordinates and quality scores.
.
* It can process the alignment to remove low-quality / ambiguous /
masked regions.
* It can export data into a single or multiple alignment file in
format such as Fasta or Clustal.
* It can read annotation data in GFF or GTF format, and extract the
corresponding alignment.
* It can perform sliding windows calculations.
* It can reconstruct phylogeny/genealogy along the genome alignment.
* It can compute population genetics statistics, such as site
frequency spectrum, number of fixed/polymorphic sites, etc.
drwxr-xr-x root/root 0 2018-04-30 09:57 ./
drwxr-xr-x root/root 0 2018-04-30 09:57 ./usr/
drwxr-xr-x root/root 0 2018-04-30 09:57 ./usr/bin/
-rwxr-xr-x root/root 603656 2018-04-30 09:57 ./usr/bin/maffilter
drwxr-xr-x root/root 0 2018-04-30 09:57 ./usr/share/
drwxr-xr-x root/root 0 2018-04-30 09:57 ./usr/share/doc/
drwxr-xr-x root/root 0 2018-04-30 09:57 ./usr/share/doc/maffilter/
-rw-r--r-- root/root 161 2018-04-30 09:12 ./usr/share/doc/maffilter/AUTHORS
-rw-r--r-- root/root 520 2018-04-30 09:57 ./usr/share/doc/maffilter/changelog.Debian.gz
-rw-r--r-- root/root 820 2018-04-30 09:12 ./usr/share/doc/maffilter/changelog.gz
-rw-r--r-- root/root 2686 2018-04-30 09:57 ./usr/share/doc/maffilter/copyright
drwxr-xr-x root/root 0 2018-04-30 09:57 ./usr/share/info/
-rw-r--r-- root/root 18108 2018-04-30 09:57 ./usr/share/info/maffilter.info.gz
drwxr-xr-x root/root 0 2018-04-30 09:57 ./usr/share/man/
drwxr-xr-x root/root 0 2018-04-30 09:57 ./usr/share/man/man1/
-rw-r--r-- root/root 345 2018-04-30 09:57 ./usr/share/man/man1/maffilter.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 128836
Build-Time: 110
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 238
Job: maffilter_1.3.0+dfsg-1
Machine Architecture: armhf
Package: maffilter
Package-Time: 411
Source-Version: 1.3.0+dfsg-1
Space: 128836
Status: successful
Version: 1.3.0+dfsg-1
--------------------------------------------------------------------------------
Finished at 2018-05-07T10:47:18Z
Build needed 00:06:51, 128836k disk space