maffilter →
1.1.0-1+dfsg-2+b1 →
armhf → 2016-08-14 01:59:41
sbuild (Debian sbuild) 0.68.0 (15 Jan 2016) on bm-wb-01
+==============================================================================+
| maffilter 1.1.0-1+dfsg-2+b1 (armhf) 14 Aug 2016 01:42 |
+==============================================================================+
Package: maffilter
Version: 1.1.0-1+dfsg-2+b1
Source Version: 1.1.0-1+dfsg-2
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'build/maffilter-Of2ewi/maffilter-1.1.0-1+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/maffilter-Of2ewi' with '<<BUILDDIR>>'
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/stretch-staging-armhf-sbuild-babb9c52-42f6-4ee6-86c2-9bf189094655' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private stretch-staging/main Sources [9221 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf Packages [11.2 MB]
Fetched 20.4 MB in 22s (917 kB/s)
Reading package lists...
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'maffilter' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/maffilter.git
Please use:
git clone https://anonscm.debian.org/git/debian-med/maffilter.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 5612 kB of source archives.
Get:1 http://172.17.0.1/private stretch-staging/main maffilter 1.1.0-1+dfsg-2 (dsc) [2215 B]
Get:2 http://172.17.0.1/private stretch-staging/main maffilter 1.1.0-1+dfsg-2 (tar) [5607 kB]
Get:3 http://172.17.0.1/private stretch-staging/main maffilter 1.1.0-1+dfsg-2 (diff) [2996 B]
Fetched 5612 kB in 0s (9317 kB/s)
Download complete and in download only mode
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-6k3JNe/apt_archive/sbuild-build-depends-core-dummy.deb'.
Warning: apt-key output should not be parsed (stdout is not a terminal)
OK
Get:1 file:/<<BUILDDIR>>/resolver-6k3JNe/apt_archive ./ InRelease
Ign:1 file:/<<BUILDDIR>>/resolver-6k3JNe/apt_archive ./ InRelease
Get:2 file:/<<BUILDDIR>>/resolver-6k3JNe/apt_archive ./ Release [2119 B]
Get:2 file:/<<BUILDDIR>>/resolver-6k3JNe/apt_archive ./ Release [2119 B]
Get:3 file:/<<BUILDDIR>>/resolver-6k3JNe/apt_archive ./ Release.gpg [299 B]
Get:3 file:/<<BUILDDIR>>/resolver-6k3JNe/apt_archive ./ Release.gpg [299 B]
Get:4 file:/<<BUILDDIR>>/resolver-6k3JNe/apt_archive ./ Sources [214 B]
Get:5 file:/<<BUILDDIR>>/resolver-6k3JNe/apt_archive ./ Packages [526 B]
Ign:4 file:/<<BUILDDIR>>/resolver-6k3JNe/apt_archive ./ Sources
Ign:5 file:/<<BUILDDIR>>/resolver-6k3JNe/apt_archive ./ Packages
Get:4 file:/<<BUILDDIR>>/resolver-6k3JNe/apt_archive ./ Sources [276 B]
Get:5 file:/<<BUILDDIR>>/resolver-6k3JNe/apt_archive ./ Packages [759 B]
Reading package lists...
W: file:///<<BUILDDIR>>/resolver-6k3JNe/apt_archive/./Release.gpg: Signature by key 3493EC2B8E6DC280C121C60435506D9A48F77B2E uses weak digest algorithm (SHA1)
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
fuse2fs libfuse2 manpages
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 1 not upgraded.
Need to get 0 B/768 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 file:/<<BUILDDIR>>/resolver-6k3JNe/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [768 B]
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package sbuild-build-depends-core-dummy.
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(Reading database ... 100%
(Reading database ... 12775 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 9), cmake, texinfo, libbpp-phyl-omics-dev (>= 2.2.0), libboost-iostreams-dev (>= 1.54.0), zlib1g-dev, libbz2-dev
Filtered Build-Depends: debhelper (>= 9), cmake, texinfo, libbpp-phyl-omics-dev (>= 2.2.0), libboost-iostreams-dev (>= 1.54.0), zlib1g-dev, libbz2-dev
dpkg-deb: building package 'sbuild-build-depends-maffilter-dummy' in '/<<BUILDDIR>>/resolver-i7IJ5Z/apt_archive/sbuild-build-depends-maffilter-dummy.deb'.
Warning: apt-key output should not be parsed (stdout is not a terminal)
OK
Get:1 file:/<<BUILDDIR>>/resolver-i7IJ5Z/apt_archive ./ InRelease
Ign:1 file:/<<BUILDDIR>>/resolver-i7IJ5Z/apt_archive ./ InRelease
Get:2 file:/<<BUILDDIR>>/resolver-i7IJ5Z/apt_archive ./ Release [2119 B]
Get:2 file:/<<BUILDDIR>>/resolver-i7IJ5Z/apt_archive ./ Release [2119 B]
Get:3 file:/<<BUILDDIR>>/resolver-i7IJ5Z/apt_archive ./ Release.gpg [299 B]
Get:3 file:/<<BUILDDIR>>/resolver-i7IJ5Z/apt_archive ./ Release.gpg [299 B]
Get:4 file:/<<BUILDDIR>>/resolver-i7IJ5Z/apt_archive ./ Sources [273 B]
Get:5 file:/<<BUILDDIR>>/resolver-i7IJ5Z/apt_archive ./ Packages [590 B]
Ign:4 file:/<<BUILDDIR>>/resolver-i7IJ5Z/apt_archive ./ Sources
Ign:5 file:/<<BUILDDIR>>/resolver-i7IJ5Z/apt_archive ./ Packages
Get:4 file:/<<BUILDDIR>>/resolver-i7IJ5Z/apt_archive ./ Sources [373 B]
Get:5 file:/<<BUILDDIR>>/resolver-i7IJ5Z/apt_archive ./ Packages [870 B]
Reading package lists...
W: file:///<<BUILDDIR>>/resolver-i7IJ5Z/apt_archive/./Release.gpg: Signature by key 3493EC2B8E6DC280C121C60435506D9A48F77B2E uses weak digest algorithm (SHA1)
Reading package lists...
Install maffilter build dependencies (apt-based resolver)
---------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
fuse2fs libfuse2 manpages
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data
debhelper dh-autoreconf dh-strip-nondeterminism file gcc-5-base gettext
gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl
libarchive13 libasan2 libboost-iostreams-dev libboost-iostreams1.61-dev
libboost-iostreams1.61.0 libboost-regex1.61-dev libboost-regex1.61.0
libboost1.61-dev libbpp-core-dev libbpp-core2v5 libbpp-phyl-dev
libbpp-phyl-omics-dev libbpp-phyl-omics1v5 libbpp-phyl9v5 libbpp-seq-dev
libbpp-seq-omics-dev libbpp-seq-omics1v5 libbpp-seq9v5 libbsd0 libbz2-dev
libcroco3 libcurl3 libexpat1 libffi6 libfile-stripnondeterminism-perl
libgcc-5-dev libglib2.0-0 libgnutls30 libgssapi-krb5-2 libhogweed4
libicu-dev libicu57 libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 libldap-2.4-2 liblzo2-2 libmagic-mgc libmagic1 libnettle6
libnghttp2-14 libp11-kit0 libpipeline1 librtmp1 libsasl2-2
libsasl2-modules-db libsigsegv2 libssh2-1 libssl1.0.2 libstdc++-5-dev
libtasn1-6 libtext-unidecode-perl libtimedate-perl libtool libunistring0
libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl
libxml-sax-perl libxml2 m4 man-db po-debconf tex-common texinfo ucf
zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation codeblocks eclipse ninja-build dh-make gettext-doc libasprintf-dev
libgettextpo-dev groff lrzip libboost1.61-doc libboost-atomic1.61-dev
libboost-chrono1.61-dev libboost-context1.61-dev libboost-coroutine1.61-dev
libboost-date-time1.61-dev libboost-exception1.61-dev
libboost-filesystem1.61-dev libboost-graph1.61-dev
libboost-graph-parallel1.61-dev libboost-locale1.61-dev libboost-log1.61-dev
libboost-math1.61-dev libboost-mpi1.61-dev libboost-mpi-python1.61-dev
libboost-program-options1.61-dev libboost-python1.61-dev
libboost-random1.61-dev libboost-serialization1.61-dev
libboost-signals1.61-dev libboost-system1.61-dev libboost-test1.61-dev
libboost-thread1.61-dev libboost-timer1.61-dev libboost-wave1.61-dev
libboost1.61-tools-dev libmpfrc++-dev libntl-dev gnutls-bin krb5-doc
krb5-user icu-doc libstdc++-5-doc libtool-doc gfortran | fortran95-compiler
gcj-jdk less www-browser libmail-box-perl texlive-base texlive-latex-base
texlive-generic-recommended texinfo-doc-nonfree texlive-fonts-recommended
Recommended packages:
curl | wget | lynx-cur bzip2-doc ca-certificates libglib2.0-data
shared-mime-info xdg-user-dirs krb5-locales libsasl2-modules libltdl-dev
libxml-sax-expat-perl xml-core libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data
debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base
groff-base icu-devtools intltool-debian libarchive-zip-perl libarchive13
libasan2 libboost-iostreams-dev libboost-iostreams1.61-dev
libboost-iostreams1.61.0 libboost-regex1.61-dev libboost-regex1.61.0
libboost1.61-dev libbpp-core-dev libbpp-core2v5 libbpp-phyl-dev
libbpp-phyl-omics-dev libbpp-phyl-omics1v5 libbpp-phyl9v5 libbpp-seq-dev
libbpp-seq-omics-dev libbpp-seq-omics1v5 libbpp-seq9v5 libbsd0 libbz2-dev
libcroco3 libcurl3 libexpat1 libffi6 libfile-stripnondeterminism-perl
libgcc-5-dev libglib2.0-0 libgnutls30 libgssapi-krb5-2 libhogweed4
libicu-dev libicu57 libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 libldap-2.4-2 liblzo2-2 libmagic-mgc libmagic1 libnettle6
libnghttp2-14 libp11-kit0 libpipeline1 librtmp1 libsasl2-2
libsasl2-modules-db libsigsegv2 libssh2-1 libssl1.0.2 libstdc++-5-dev
libtasn1-6 libtext-unidecode-perl libtimedate-perl libtool libunistring0
libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl
libxml-sax-perl libxml2 m4 man-db po-debconf
sbuild-build-depends-maffilter-dummy tex-common texinfo ucf zlib1g-dev
The following packages will be upgraded:
gcc-5-base
1 upgraded, 87 newly installed, 0 to remove and 0 not upgraded.
Need to get 64.9 MB/65.0 MB of archives.
After this operation, 454 MB of additional disk space will be used.
Get:1 file:/<<BUILDDIR>>/resolver-i7IJ5Z/apt_archive ./ sbuild-build-depends-maffilter-dummy 0.invalid.0 [832 B]
Get:2 http://172.17.0.1/private stretch-staging/main armhf groff-base armhf 1.22.3-8 [1087 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf libbsd0 armhf 0.8.3-1 [89.0 kB]
Get:4 http://172.17.0.1/private stretch-staging/main armhf bsdmainutils armhf 9.0.10 [177 kB]
Get:5 http://172.17.0.1/private stretch-staging/main armhf libpipeline1 armhf 1.4.1-2 [23.7 kB]
Get:6 http://172.17.0.1/private stretch-staging/main armhf man-db armhf 2.7.5-1 [975 kB]
Get:7 http://172.17.0.1/private stretch-staging/main armhf cmake-data all 3.5.2-2 [1128 kB]
Get:8 http://172.17.0.1/private stretch-staging/main armhf liblzo2-2 armhf 2.08-1.2 [47.6 kB]
Get:9 http://172.17.0.1/private stretch-staging/main armhf libnettle6 armhf 3.2-1 [202 kB]
Get:10 http://172.17.0.1/private stretch-staging/main armhf libicu57 armhf 57.1-2 [7404 kB]
Get:11 http://172.17.0.1/private stretch-staging/main armhf libxml2 armhf 2.9.4+dfsg1-1+b1 [803 kB]
Get:12 http://172.17.0.1/private stretch-staging/main armhf libarchive13 armhf 3.2.1-2 [250 kB]
Get:13 http://172.17.0.1/private stretch-staging/main armhf libkeyutils1 armhf 1.5.9-9 [11.9 kB]
Get:14 http://172.17.0.1/private stretch-staging/main armhf libkrb5support0 armhf 1.14.3+dfsg-1 [57.4 kB]
Get:15 http://172.17.0.1/private stretch-staging/main armhf libk5crypto3 armhf 1.14.3+dfsg-1 [111 kB]
Get:16 http://172.17.0.1/private stretch-staging/main armhf libkrb5-3 armhf 1.14.3+dfsg-1 [263 kB]
Get:17 http://172.17.0.1/private stretch-staging/main armhf libgssapi-krb5-2 armhf 1.14.3+dfsg-1 [131 kB]
Get:18 http://172.17.0.1/private stretch-staging/main armhf libhogweed4 armhf 3.2-1 [126 kB]
Get:19 http://172.17.0.1/private stretch-staging/main armhf libp11-kit0 armhf 0.23.2-4 [93.2 kB]
Get:20 http://172.17.0.1/private stretch-staging/main armhf libtasn1-6 armhf 4.8-1 [44.1 kB]
Get:21 http://172.17.0.1/private stretch-staging/main armhf libgnutls30 armhf 3.5.2-2 [721 kB]
Get:22 http://172.17.0.1/private stretch-staging/main armhf libsasl2-modules-db armhf 2.1.26.dfsg1-15 [65.6 kB]
Get:23 http://172.17.0.1/private stretch-staging/main armhf libsasl2-2 armhf 2.1.26.dfsg1-15 [96.7 kB]
Get:24 http://172.17.0.1/private stretch-staging/main armhf libldap-2.4-2 armhf 2.4.42+dfsg-2+rpi1+b2 [198 kB]
Get:25 http://172.17.0.1/private stretch-staging/main armhf libnghttp2-14 armhf 1.13.0-1 [68.7 kB]
Get:26 http://172.17.0.1/private stretch-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-1 [54.2 kB]
Get:27 http://172.17.0.1/private stretch-staging/main armhf libssh2-1 armhf 1.7.0-1 [125 kB]
Get:28 http://172.17.0.1/private stretch-staging/main armhf libssl1.0.2 armhf 1.0.2h-1 [889 kB]
Get:29 http://172.17.0.1/private stretch-staging/main armhf libcurl3 armhf 7.50.1-1 [251 kB]
Get:30 http://172.17.0.1/private stretch-staging/main armhf libexpat1 armhf 2.2.0-1 [61.7 kB]
Get:31 http://172.17.0.1/private stretch-staging/main armhf libjsoncpp1 armhf 1.7.2-1 [65.2 kB]
Get:32 http://172.17.0.1/private stretch-staging/main armhf cmake armhf 3.5.2-2 [2195 kB]
Get:33 http://172.17.0.1/private stretch-staging/main armhf gcc-5-base armhf 5.4.1-1 [173 kB]
Get:34 http://172.17.0.1/private stretch-staging/main armhf libboost-iostreams1.61.0 armhf 1.61.0+dfsg-2.1 [48.8 kB]
Get:35 http://172.17.0.1/private stretch-staging/main armhf libmagic-mgc armhf 1:5.28-4 [210 kB]
Get:36 http://172.17.0.1/private stretch-staging/main armhf libmagic1 armhf 1:5.28-4 [104 kB]
Get:37 http://172.17.0.1/private stretch-staging/main armhf file armhf 1:5.28-4 [62.7 kB]
Get:38 http://172.17.0.1/private stretch-staging/main armhf gettext-base armhf 0.19.8.1-1 [117 kB]
Get:39 http://172.17.0.1/private stretch-staging/main armhf libsigsegv2 armhf 2.10-5 [28.4 kB]
Get:40 http://172.17.0.1/private stretch-staging/main armhf m4 armhf 1.4.17-5 [239 kB]
Get:41 http://172.17.0.1/private stretch-staging/main armhf ucf all 3.0036 [70.2 kB]
Get:42 http://172.17.0.1/private stretch-staging/main armhf autoconf all 2.69-10 [338 kB]
Get:43 http://172.17.0.1/private stretch-staging/main armhf autotools-dev all 20160430.1 [72.6 kB]
Get:44 http://172.17.0.1/private stretch-staging/main armhf automake all 1:1.15-4 [735 kB]
Get:45 http://172.17.0.1/private stretch-staging/main armhf autopoint all 0.19.8.1-1 [433 kB]
Get:46 http://172.17.0.1/private stretch-staging/main armhf libglib2.0-0 armhf 2.48.1-2 [2546 kB]
Get:47 http://172.17.0.1/private stretch-staging/main armhf libcroco3 armhf 0.6.11-1 [131 kB]
Get:48 http://172.17.0.1/private stretch-staging/main armhf libunistring0 armhf 0.9.6+really0.9.3-0.1 [252 kB]
Get:49 http://172.17.0.1/private stretch-staging/main armhf gettext armhf 0.19.8.1-1 [1433 kB]
Get:50 http://172.17.0.1/private stretch-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:51 http://172.17.0.1/private stretch-staging/main armhf po-debconf all 1.0.19 [249 kB]
Get:52 http://172.17.0.1/private stretch-staging/main armhf libarchive-zip-perl all 1.58-1 [95.5 kB]
Get:53 http://172.17.0.1/private stretch-staging/main armhf libfile-stripnondeterminism-perl all 0.022-1 [13.1 kB]
Get:54 http://172.17.0.1/private stretch-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:55 http://172.17.0.1/private stretch-staging/main armhf dh-strip-nondeterminism all 0.022-1 [7902 B]
Get:56 http://172.17.0.1/private stretch-staging/main armhf libtool all 2.4.6-0.1 [200 kB]
Get:57 http://172.17.0.1/private stretch-staging/main armhf dh-autoreconf all 12 [15.8 kB]
Get:58 http://172.17.0.1/private stretch-staging/main armhf debhelper all 9.20160709 [799 kB]
Get:59 http://172.17.0.1/private stretch-staging/main armhf icu-devtools armhf 57.1-2 [156 kB]
Get:60 http://172.17.0.1/private stretch-staging/main armhf libasan2 armhf 5.4.1-1 [223 kB]
Get:61 http://172.17.0.1/private stretch-staging/main armhf libgcc-5-dev armhf 5.4.1-1 [445 kB]
Get:62 http://172.17.0.1/private stretch-staging/main armhf libstdc++-5-dev armhf 5.4.1-1 [1434 kB]
Get:63 http://172.17.0.1/private stretch-staging/main armhf libboost1.61-dev armhf 1.61.0+dfsg-2.1 [6851 kB]
Get:64 http://172.17.0.1/private stretch-staging/main armhf libboost-regex1.61.0 armhf 1.61.0+dfsg-2.1 [232 kB]
Get:65 http://172.17.0.1/private stretch-staging/main armhf libicu-dev armhf 57.1-2 [15.5 MB]
Get:66 http://172.17.0.1/private stretch-staging/main armhf libboost-regex1.61-dev armhf 1.61.0+dfsg-2.1 [324 kB]
Get:67 http://172.17.0.1/private stretch-staging/main armhf libboost-iostreams1.61-dev armhf 1.61.0+dfsg-2.1 [58.2 kB]
Get:68 http://172.17.0.1/private stretch-staging/main armhf libboost-iostreams-dev armhf 1.61.0.2 [3392 B]
Get:69 http://172.17.0.1/private stretch-staging/main armhf libbpp-core2v5 armhf 2.2.0-3 [467 kB]
Get:70 http://172.17.0.1/private stretch-staging/main armhf libbpp-core-dev armhf 2.2.0-3 [823 kB]
Get:71 http://172.17.0.1/private stretch-staging/main armhf libbpp-seq9v5 armhf 2.2.0-1 [401 kB]
Get:72 http://172.17.0.1/private stretch-staging/main armhf libbpp-phyl9v5 armhf 2.2.0-1 [1223 kB]
Get:73 http://172.17.0.1/private stretch-staging/main armhf libbpp-seq-dev armhf 2.2.0-1 [1524 kB]
Get:74 http://172.17.0.1/private stretch-staging/main armhf libbpp-phyl-dev armhf 2.2.0-1 [5245 kB]
Get:75 http://172.17.0.1/private stretch-staging/main armhf libbpp-seq-omics1v5 armhf 2.2.0-1 [201 kB]
Get:76 http://172.17.0.1/private stretch-staging/main armhf libbpp-phyl-omics1v5 armhf 2.2.0-2 [56.5 kB]
Get:77 http://172.17.0.1/private stretch-staging/main armhf libbpp-seq-omics-dev armhf 2.2.0-1 [802 kB]
Get:78 http://172.17.0.1/private stretch-staging/main armhf libbpp-phyl-omics-dev armhf 2.2.0-2 [170 kB]
Get:79 http://172.17.0.1/private stretch-staging/main armhf libbz2-dev armhf 1.0.6-8 [27.8 kB]
Get:80 http://172.17.0.1/private stretch-staging/main armhf libtext-unidecode-perl all 1.27-1 [103 kB]
Get:81 http://172.17.0.1/private stretch-staging/main armhf libxml-namespacesupport-perl all 1.11-1 [14.8 kB]
Get:82 http://172.17.0.1/private stretch-staging/main armhf libxml-sax-base-perl all 1.07-1 [23.1 kB]
Get:83 http://172.17.0.1/private stretch-staging/main armhf libxml-sax-perl all 0.99+dfsg-2 [68.3 kB]
Get:84 http://172.17.0.1/private stretch-staging/main armhf libxml-libxml-perl armhf 2.0126+dfsg-1 [317 kB]
Get:85 http://172.17.0.1/private stretch-staging/main armhf tex-common all 6.05 [564 kB]
Get:86 http://172.17.0.1/private stretch-staging/main armhf texinfo armhf 6.1.0.dfsg.1-8 [1261 kB]
Get:87 http://172.17.0.1/private stretch-staging/main armhf zlib1g-dev armhf 1:1.2.8.dfsg-2+b1 [197 kB]
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Setting up po-debconf (1.0.19) ...
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+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.6.0-1-armmp armhf (armv7l)
Toolchain package versions: binutils_2.26.1-1 dpkg-dev_1.18.10 g++-6_6.1.1-11+rpi1 gcc-6_6.1.1-11+rpi1 libc6-dev_2.23-4 libstdc++-5-dev_5.4.1-1 libstdc++-6-dev_6.1.1-11+rpi1 libstdc++6_6.1.1-11+rpi1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: adduser_3.115 apt_1.3~pre3 autoconf_2.69-10 automake_1:1.15-4 autopoint_0.19.8.1-1 autotools-dev_20160430.1 base-files_9.6+rpi1 base-passwd_3.5.39 bash_4.3-15 binutils_2.26.1-1 bsdmainutils_9.0.10 bsdutils_1:2.28-6 build-essential_12.2 bzip2_1.0.6-8 cmake_3.5.2-2 cmake-data_3.5.2-2 coreutils_8.25-2 cpio_2.11+dfsg-5 cpp_4:6.1.1-1 cpp-6_6.1.1-11+rpi1 dash_0.5.8-2.3 debconf_1.5.59 debfoster_2.7-2.1 debhelper_9.20160709 debianutils_4.8 dh-autoreconf_12 dh-strip-nondeterminism_0.022-1 diffutils_1:3.3-3 dmsetup_2:1.02.130-1 dpkg_1.18.10 dpkg-dev_1.18.10 e2fslibs_1.43.1-1 e2fsprogs_1.43.1-1 fakeroot_1.21-1 file_1:5.28-4 findutils_4.6.0+git+20160703-2 fuse2fs_1.43.1-1 g++_4:6.1.1-1 g++-6_6.1.1-11+rpi1 gcc_4:6.1.1-1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-14 gcc-5-base_5.4.1-1 gcc-6_6.1.1-11+rpi1 gcc-6-base_6.1.1-11+rpi1 gettext_0.19.8.1-1 gettext-base_0.19.8.1-1 gnupg_1.4.20-6 gpgv_1.4.20-6 grep_2.25-6 groff-base_1.22.3-8 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systemd_230-7+b1 systemd-sysv_230-7+b1 sysv-rc_2.88dsf-59.8 sysvinit-utils_2.88dsf-59.8 tar_1.29b-1 tex-common_6.05 texinfo_6.1.0.dfsg.1-8 tzdata_2016f-1 ucf_3.0036 udev_230-7+b1 util-linux_2.28-6 xz-utils_5.1.1alpha+20120614-2.1 zlib1g_1:1.2.8.dfsg-2+b1 zlib1g-dev_1:1.2.8.dfsg-2+b1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Sun May 22 20:17:00 2016 UTC using RSA key ID D1C646D1
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./maffilter_1.1.0-1+dfsg-2.dsc
dpkg-source: info: extracting maffilter in maffilter-1.1.0-1+dfsg
dpkg-source: info: unpacking maffilter_1.1.0-1+dfsg.orig.tar.xz
dpkg-source: info: unpacking maffilter_1.1.0-1+dfsg-2.debian.tar.xz
Check disc space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 1.1.0-1+dfsg-2+b1
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=root
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
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SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package maffilter
dpkg-buildpackage: info: source version 1.1.0-1+dfsg-2+b1
dpkg-buildpackage: info: source distribution stretch-staging
dpkg-source --before-build maffilter-1.1.0-1+dfsg
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean
dh_testdir
dh_auto_clean
dh_clean
debian/rules build-arch
dh build-arch
dh_testdir -a
dh_update_autotools_config -a
dh_auto_configure -a
cmake .. -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var
-- The C compiler identification is GNU 6.1.1
-- The CXX compiler identification is GNU 6.1.1
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found nroff here: /usr/bin/nroff
Adding targets: man
-- Found makeinfo here: /usr/bin/makeinfo
Adding targets: info, html
Adding target info to target all
-- Library bpp-phyl-omics found here:
includes: /usr/include
dynamic libraries: /usr/lib/arm-linux-gnueabihf/libbpp-phyl-omics.so
-- Library bpp-phyl found here:
includes: /usr/include
dynamic libraries: /usr/lib/arm-linux-gnueabihf/libbpp-phyl.so
-- Library bpp-seq-omics found here:
includes: /usr/include
dynamic libraries: /usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.so
-- Library bpp-seq found here:
includes: /usr/include
dynamic libraries: /usr/lib/arm-linux-gnueabihf/libbpp-seq.so
-- Library bpp-core found here:
includes: /usr/include
dynamic libraries: /usr/lib/arm-linux-gnueabihf/libbpp-core.so
-- Boost version: 1.61.0
-- Found the following Boost libraries:
-- iostreams
-- regex
-- Boost found: /usr/include
-- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.8")
-- Zlib found: /usr/include
-- Found BZip2: /usr/lib/arm-linux-gnueabihf/libbz2.so (found version "1.0.6")
-- Looking for BZ2_bzCompressInit
-- Looking for BZ2_bzCompressInit - found
-- BZip2 found: /usr/include
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_INSTALL_LOCALSTATEDIR
CMAKE_INSTALL_SYSCONFDIR
-- Build files have been written to: /<<BUILDDIR>>/maffilter-1.1.0-1+dfsg/obj-arm-linux-gnueabihf
dh_auto_build -a
make -j1
make[1]: Entering directory '/<<BUILDDIR>>/maffilter-1.1.0-1+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/cmake -H/<<BUILDDIR>>/maffilter-1.1.0-1+dfsg -B/<<BUILDDIR>>/maffilter-1.1.0-1+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<BUILDDIR>>/maffilter-1.1.0-1+dfsg/obj-arm-linux-gnueabihf/CMakeFiles /<<BUILDDIR>>/maffilter-1.1.0-1+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/<<BUILDDIR>>/maffilter-1.1.0-1+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/info.dir/build.make CMakeFiles/info.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/maffilter-1.1.0-1+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/maffilter-1.1.0-1+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/maffilter-1.1.0-1+dfsg /<<BUILDDIR>>/maffilter-1.1.0-1+dfsg /<<BUILDDIR>>/maffilter-1.1.0-1+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/maffilter-1.1.0-1+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/maffilter-1.1.0-1+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/info.dir/DependInfo.cmake --color=
Scanning dependencies of target info
make[3]: Leaving directory '/<<BUILDDIR>>/maffilter-1.1.0-1+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/info.dir/build.make CMakeFiles/info.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/maffilter-1.1.0-1+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/maffilter-1.1.0-1+dfsg/doc && /usr/bin/makeinfo maffilter.texi
make[3]: Leaving directory '/<<BUILDDIR>>/maffilter-1.1.0-1+dfsg/obj-arm-linux-gnueabihf'
[ 0%] Built target info
make -f CMakeFiles/man.dir/build.make CMakeFiles/man.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/maffilter-1.1.0-1+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/maffilter-1.1.0-1+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/maffilter-1.1.0-1+dfsg /<<BUILDDIR>>/maffilter-1.1.0-1+dfsg /<<BUILDDIR>>/maffilter-1.1.0-1+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/maffilter-1.1.0-1+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/maffilter-1.1.0-1+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/man.dir/DependInfo.cmake --color=
Scanning dependencies of target man
make[3]: Leaving directory '/<<BUILDDIR>>/maffilter-1.1.0-1+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/man.dir/build.make CMakeFiles/man.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/maffilter-1.1.0-1+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/maffilter-1.1.0-1+dfsg/man && cp maffilter.1.txt maffilter.1
cd /<<BUILDDIR>>/maffilter-1.1.0-1+dfsg/man && gzip -f maffilter.1
make[3]: Leaving directory '/<<BUILDDIR>>/maffilter-1.1.0-1+dfsg/obj-arm-linux-gnueabihf'
[ 0%] Built target man
make -f MafFilter/CMakeFiles/maffilter.dir/build.make MafFilter/CMakeFiles/maffilter.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/maffilter-1.1.0-1+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/maffilter-1.1.0-1+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/maffilter-1.1.0-1+dfsg /<<BUILDDIR>>/maffilter-1.1.0-1+dfsg/MafFilter /<<BUILDDIR>>/maffilter-1.1.0-1+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/maffilter-1.1.0-1+dfsg/obj-arm-linux-gnueabihf/MafFilter /<<BUILDDIR>>/maffilter-1.1.0-1+dfsg/obj-arm-linux-gnueabihf/MafFilter/CMakeFiles/maffilter.dir/DependInfo.cmake --color=
Scanning dependencies of target maffilter
make[3]: Leaving directory '/<<BUILDDIR>>/maffilter-1.1.0-1+dfsg/obj-arm-linux-gnueabihf'
make -f MafFilter/CMakeFiles/maffilter.dir/build.make MafFilter/CMakeFiles/maffilter.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/maffilter-1.1.0-1+dfsg/obj-arm-linux-gnueabihf'
[ 33%] Building CXX object MafFilter/CMakeFiles/maffilter.dir/MafFilter.cpp.o
cd /<<BUILDDIR>>/maffilter-1.1.0-1+dfsg/obj-arm-linux-gnueabihf/MafFilter && /usr/bin/c++ -Wall -Weffc++ -Wshadow -o CMakeFiles/maffilter.dir/MafFilter.cpp.o -c /<<BUILDDIR>>/maffilter-1.1.0-1+dfsg/MafFilter/MafFilter.cpp
In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0,
from /usr/include/boost/iostreams/detail/resolve.hpp:26,
from /usr/include/boost/iostreams/detail/push.hpp:24,
from /usr/include/boost/iostreams/filtering_stream.hpp:19,
from /<<BUILDDIR>>/maffilter-1.1.0-1+dfsg/MafFilter/MafFilter.cpp:51:
/usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated
# pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated")
^
In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0,
from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12,
from /usr/include/boost/iostreams/detail/resolve.hpp:26,
from /usr/include/boost/iostreams/detail/push.hpp:24,
from /usr/include/boost/iostreams/filtering_stream.hpp:19,
from /<<BUILDDIR>>/maffilter-1.1.0-1+dfsg/MafFilter/MafFilter.cpp:51:
/usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
# pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
^
In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0,
from /usr/include/boost/iostreams/detail/resolve.hpp:26,
from /usr/include/boost/iostreams/detail/push.hpp:24,
from /usr/include/boost/iostreams/filtering_stream.hpp:19,
from /<<BUILDDIR>>/maffilter-1.1.0-1+dfsg/MafFilter/MafFilter.cpp:51:
/usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
# pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
^
/<<BUILDDIR>>/maffilter-1.1.0-1+dfsg/MafFilter/MafFilter.cpp: In function 'int main(int, char**)':
/<<BUILDDIR>>/maffilter-1.1.0-1+dfsg/MafFilter/MafFilter.cpp:621:9: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
auto_ptr<FeatureReader> ftReader;
^~~~~~~~
In file included from /usr/include/c++/6/bits/locale_conv.h:41:0,
from /usr/include/c++/6/locale:43,
from /usr/include/c++/6/iomanip:43,
from /<<BUILDDIR>>/maffilter-1.1.0-1+dfsg/MafFilter/MafFilter.cpp:42:
/usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
/<<BUILDDIR>>/maffilter-1.1.0-1+dfsg/MafFilter/MafFilter.cpp:894:9: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
auto_ptr<FeatureReader> ftReader;
^~~~~~~~
In file included from /usr/include/c++/6/bits/locale_conv.h:41:0,
from /usr/include/c++/6/locale:43,
from /usr/include/c++/6/iomanip:43,
from /<<BUILDDIR>>/maffilter-1.1.0-1+dfsg/MafFilter/MafFilter.cpp:42:
/usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
/<<BUILDDIR>>/maffilter-1.1.0-1+dfsg/MafFilter/MafFilter.cpp:999:11: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
auto_ptr<SubstitutionModel> model(modelReader.read(&AlphabetTools::DNA_ALPHABET, modelDesc, 0, true));
^~~~~~~~
In file included from /usr/include/c++/6/bits/locale_conv.h:41:0,
from /usr/include/c++/6/locale:43,
from /usr/include/c++/6/iomanip:43,
from /<<BUILDDIR>>/maffilter-1.1.0-1+dfsg/MafFilter/MafFilter.cpp:42:
/usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
/<<BUILDDIR>>/maffilter-1.1.0-1+dfsg/MafFilter/MafFilter.cpp:1001:11: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
auto_ptr<DiscreteDistribution> rdist(rdistReader.read(rdistDesc, true));
^~~~~~~~
In file included from /usr/include/c++/6/bits/locale_conv.h:41:0,
from /usr/include/c++/6/locale:43,
from /usr/include/c++/6/iomanip:43,
from /<<BUILDDIR>>/maffilter-1.1.0-1+dfsg/MafFilter/MafFilter.cpp:42:
/usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
/<<BUILDDIR>>/maffilter-1.1.0-1+dfsg/MafFilter/MafFilter.cpp:1002:11: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
auto_ptr<DistanceEstimation> distEst(new DistanceEstimation(model.release(), rdist.release()));
^~~~~~~~
In file included from /usr/include/c++/6/bits/locale_conv.h:41:0,
from /usr/include/c++/6/locale:43,
from /usr/include/c++/6/iomanip:43,
from /<<BUILDDIR>>/maffilter-1.1.0-1+dfsg/MafFilter/MafFilter.cpp:42:
/usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
[ 66%] Building CXX object MafFilter/CMakeFiles/maffilter.dir/OutputAsFeaturesMafIterator.cpp.o
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cd /<<BUILDDIR>>/maffilter-1.1.0-1+dfsg/man && cp maffilter.1.txt maffilter.1
cd /<<BUILDDIR>>/maffilter-1.1.0-1+dfsg/man && gzip -f maffilter.1
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cd /<<BUILDDIR>>/maffilter-1.1.0-1+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/maffilter-1.1.0-1+dfsg /<<BUILDDIR>>/maffilter-1.1.0-1+dfsg/MafFilter /<<BUILDDIR>>/maffilter-1.1.0-1+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/maffilter-1.1.0-1+dfsg/obj-arm-linux-gnueabihf/MafFilter /<<BUILDDIR>>/maffilter-1.1.0-1+dfsg/obj-arm-linux-gnueabihf/MafFilter/CMakeFiles/maffilter.dir/DependInfo.cmake --color=
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Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "None"
-- Installing: /<<BUILDDIR>>/maffilter-1.1.0-1+dfsg/debian/tmp/usr/bin/maffilter
-- Installing: /<<BUILDDIR>>/maffilter-1.1.0-1+dfsg/debian/tmp/usr/share/info/maffilter.info
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find debian/*/usr/share -name "*.bpp" -executable -exec chmod -x \{\} \;
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dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/maffilter/usr/bin/maffilter was not linked against libbz2.so.1.0 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/maffilter/usr/bin/maffilter was not linked against libz.so.1 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/maffilter/usr/bin/maffilter was not linked against libboost_regex.so.1.61.0 (it uses none of the library's symbols)
dh_installdeb -a
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dh_md5sums -a
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dpkg-deb: building package 'maffilter-dbgsym' in '../maffilter-dbgsym_1.1.0-1+dfsg-2+b1_armhf.deb'.
dpkg-deb: building package 'maffilter' in '../maffilter_1.1.0-1+dfsg-2+b1_armhf.deb'.
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../maffilter_1.1.0-1+dfsg-2+b1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build maffilter-1.1.0-1+dfsg
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 20160814-0157
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
maffilter_1.1.0-1+dfsg-2+b1_armhf.changes:
------------------------------------------
Format: 1.8
Date: Sun, 22 May 2016 21:58:51 +0200
Source: maffilter (1.1.0-1+dfsg-2)
Binary: maffilter maffilter-examples
Binary-Only: yes
Architecture: armhf
Version: 1.1.0-1+dfsg-2+b1
Distribution: stretch-staging
Urgency: low
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Raspbian wandboard test autobuilder <root@raspbian.org>
Description:
maffilter - process genome alignment in the Multiple Alignment Format
maffilter-examples - process genome alignment in the Multiple Alignment Format (exampl
Changes:
maffilter (1.1.0-1+dfsg-2+b1) stretch-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
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Files:
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+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
maffilter-dbgsym_1.1.0-1+dfsg-2+b1_armhf.deb
--------------------------------------------
new debian package, version 2.0.
size 88738 bytes: control archive=502 bytes.
466 bytes, 13 lines control
106 bytes, 1 lines md5sums
Package: maffilter-dbgsym
Source: maffilter (1.1.0-1+dfsg-2)
Version: 1.1.0-1+dfsg-2+b1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 778
Depends: maffilter (= 1.1.0-1+dfsg-2+b1)
Section: debug
Priority: extra
Homepage: http://biopp.univ-montp2.fr/forge/maffilter
Description: Debug symbols for maffilter
Auto-Built-Package: debug-symbols
Build-Ids: 71c0f4e7e273cd62d92586a37197719a8c0bd5c9
drwxr-xr-x root/root 0 2016-05-22 19:58 ./
drwxr-xr-x root/root 0 2016-05-22 19:58 ./usr/
drwxr-xr-x root/root 0 2016-05-22 19:58 ./usr/lib/
drwxr-xr-x root/root 0 2016-05-22 19:58 ./usr/lib/debug/
drwxr-xr-x root/root 0 2016-05-22 19:58 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2016-05-22 19:58 ./usr/lib/debug/.build-id/71/
-rw-r--r-- root/root 785444 2016-05-22 19:58 ./usr/lib/debug/.build-id/71/c0f4e7e273cd62d92586a37197719a8c0bd5c9.debug
drwxr-xr-x root/root 0 2016-05-22 19:58 ./usr/share/
drwxr-xr-x root/root 0 2016-05-22 19:58 ./usr/share/doc/
lrwxrwxrwx root/root 0 2016-05-22 19:58 ./usr/share/doc/maffilter-dbgsym -> maffilter
maffilter_1.1.0-1+dfsg-2+b1_armhf.deb
-------------------------------------
new debian package, version 2.0.
size 236104 bytes: control archive=1191 bytes.
1388 bytes, 26 lines control
558 bytes, 8 lines md5sums
Package: maffilter
Source: maffilter (1.1.0-1+dfsg-2)
Version: 1.1.0-1+dfsg-2+b1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1311
Depends: libboost-iostreams1.61.0, libboost-regex1.61.0, libbpp-core2v5, libbpp-phyl-omics1v5, libbpp-phyl9v5, libbpp-seq-omics1v5, libbpp-seq9v5, libbz2-1.0, libc6 (>= 2.4), libgcc1 (>= 1:3.5), libstdc++6 (>= 5.2), zlib1g (>= 1:1.1.4)
Suggests: maffilter-examples
Section: science
Priority: optional
Homepage: http://biopp.univ-montp2.fr/forge/maffilter
Description: process genome alignment in the Multiple Alignment Format
MafFilter applies a series of "filters" to a MAF file, in order to
clean it, extract data and computer statistics while keeping track of
the associated meta-data such as genome coordinates and quality scores.
.
* It can process the alignment to remove low-quality / ambiguous /
masked regions.
* It can export data into a single or multiple alignment file in
format such as Fasta or Clustal.
* It can read annotation data in GFF or GTF format, and extract the
corresponding alignment.
* It can perform sliding windows calculations.
* It can reconstruct phylogeny/genealogy along the genome alignment.
* It can compute population genetics statistics, such as site
frequency spectrum, number of fixed/polymorphic sites, etc.
drwxr-xr-x root/root 0 2016-05-22 19:58 ./
drwxr-xr-x root/root 0 2016-05-22 19:58 ./usr/
drwxr-xr-x root/root 0 2016-05-22 19:58 ./usr/bin/
-rwxr-xr-x root/root 1309168 2016-05-22 19:58 ./usr/bin/maffilter
drwxr-xr-x root/root 0 2016-05-22 19:58 ./usr/share/
drwxr-xr-x root/root 0 2016-05-22 19:58 ./usr/share/doc/
drwxr-xr-x root/root 0 2016-05-22 19:58 ./usr/share/doc/maffilter/
-rw-r--r-- root/root 161 2015-03-31 07:31 ./usr/share/doc/maffilter/AUTHORS.txt
-rw-r--r-- root/root 226 2016-05-22 19:58 ./usr/share/doc/maffilter/changelog.Debian.armhf.gz
-rw-r--r-- root/root 233 2016-05-22 19:58 ./usr/share/doc/maffilter/changelog.Debian.gz
-rw-r--r-- root/root 200 2015-03-31 13:33 ./usr/share/doc/maffilter/changelog.gz
-rw-r--r-- root/root 2686 2016-05-22 19:58 ./usr/share/doc/maffilter/copyright
drwxr-xr-x root/root 0 2016-05-22 19:58 ./usr/share/info/
-rw-r--r-- root/root 14153 2016-05-22 19:58 ./usr/share/info/maffilter.info.gz
drwxr-xr-x root/root 0 2016-05-22 19:58 ./usr/share/man/
drwxr-xr-x root/root 0 2016-05-22 19:58 ./usr/share/man/man1/
-rw-r--r-- root/root 344 2016-05-22 19:58 ./usr/share/man/man1/maffilter.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 32964
Build-Time: 198
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 705
Job: maffilter_1.1.0-1+dfsg-2
Machine Architecture: armhf
Package: maffilter
Package-Time: 949
Source-Version: 1.1.0-1+dfsg-2
Space: 32964
Status: successful
Version: 1.1.0-1+dfsg-2+b1
--------------------------------------------------------------------------------
Finished at 20160814-0157
Build needed 00:15:49, 32964k disc space