macs →
3.0.1-1 →
armhf → 2024-02-26 06:16:34
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-02
+==============================================================================+
| macs 3.0.1-1 (armhf) Mon, 26 Feb 2024 04:36:58 +0000 |
+==============================================================================+
Package: macs
Version: 3.0.1-1
Source Version: 3.0.1-1
Distribution: trixie-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/trixie-staging-armhf-sbuild-f55c6ead-2aa2-4a09-b46c-479d1b5c5cff' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private trixie-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private trixie-staging/main Sources [14.4 MB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf Packages [15.1 MB]
Fetched 29.6 MB in 29s (1007 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http://172.17.4.1/private/dists/trixie-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'macs' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/macs.git
Please use:
git clone https://salsa.debian.org/med-team/macs.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 199 MB of source archives.
Get:1 http://172.17.4.1/private trixie-staging/main macs 3.0.1-1 (dsc) [2152 B]
Get:2 http://172.17.4.1/private trixie-staging/main macs 3.0.1-1 (tar) [197 MB]
Get:3 http://172.17.4.1/private trixie-staging/main macs 3.0.1-1 (diff) [1269 kB]
Fetched 199 MB in 19s (10.3 MB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/macs-rUG2Sp/macs-3.0.1' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/macs-rUG2Sp' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-7NfWBE/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-7NfWBE/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-7NfWBE/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-7NfWBE/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-7NfWBE/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-7NfWBE/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-7NfWBE/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-7NfWBE/apt_archive ./ Packages [430 B]
Fetched 2106 B in 1s (2600 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libldap-common libpam-cap netbase sensible-utils sgml-base
util-linux-extra
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 9 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-7NfWBE/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (24.1 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 13128 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-sequence-python3, pybuild-plugin-pyproject, python3-all-dev, python3-numpy, python3-setuptools, python3-pip, python3-pytest, python3-cykhash, python3-hmmlearn, libsimde-dev, cython3, help2man, procps, bc
Filtered Build-Depends: debhelper-compat (= 13), dh-sequence-python3, pybuild-plugin-pyproject, python3-all-dev, python3-numpy, python3-setuptools, python3-pip, python3-pytest, python3-cykhash, python3-hmmlearn, libsimde-dev, cython3, help2man, procps, bc
dpkg-deb: building package 'sbuild-build-depends-macs-dummy' in '/<<BUILDDIR>>/resolver-7NfWBE/apt_archive/sbuild-build-depends-macs-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-macs-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-7NfWBE/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-7NfWBE/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-7NfWBE/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-7NfWBE/apt_archive ./ Sources [587 B]
Get:5 copy:/<<BUILDDIR>>/resolver-7NfWBE/apt_archive ./ Packages [673 B]
Fetched 2593 B in 1s (3529 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install macs build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libldap-common libpam-cap libperl5.36 perl-modules-5.36
sgml-base util-linux-extra
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bc bsdextrautils ca-certificates
cython3 debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file
gcc-14-base gettext gettext-base groff-base help2man intltool-debian
libarchive-zip-perl libasan8 libatomic1 libblas3 libcc1-0 libdebhelper-perl
libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libgcc-s1
libgfortran5 libgomp1 libicu72 libjs-jquery libjs-sphinxdoc libjs-underscore
liblapack3 liblbfgsb0 liblocale-gettext-perl libmagic-mgc libmagic1
libperl5.38 libpipeline1 libproc2-0 libpython3-all-dev libpython3-dev
libpython3-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal
libpython3.11-stdlib libpython3.12 libpython3.12-dev libpython3.12-minimal
libpython3.12-stdlib libsimde-dev libstdc++6 libsub-override-perl libtool
libubsan1 libuchardet0 libxml2 m4 man-db media-types openssl perl perl-base
perl-modules-5.38 po-debconf procps pybuild-plugin-pyproject python3
python3-all python3-all-dev python3-build python3-cykhash python3-decorator
python3-dev python3-distutils python3-hmmlearn python3-iniconfig
python3-installer python3-joblib python3-lib2to3 python3-minimal
python3-numpy python3-packaging python3-pip python3-pkg-resources
python3-pluggy python3-pyproject-hooks python3-pytest python3-scipy
python3-setuptools python3-sklearn python3-sklearn-lib python3-threadpoolctl
python3-toml python3-wheel python3.11 python3.11-dev python3.11-minimal
python3.12 python3.12-dev python3.12-minimal zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc cython-doc dh-make flit
gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran
| fortran95-compiler gcj-jdk m4-doc apparmor less www-browser perl-doc
libterm-readline-gnu-perl | libterm-readline-perl-perl
libtap-harness-archive-perl libmail-box-perl python3-doc python3-tk
python3-venv python-build-doc python-installer-doc gfortran python-scipy-doc
python-setuptools-doc python3-dap python-sklearn-doc ipython3
python3.11-venv python3.11-doc binfmt-support python3.12-venv python3.12-doc
Recommended packages:
curl | wget | lynx libarchive-cpio-perl javascript-common libltdl-dev
libmail-sendmail-perl psmisc python3-simplejson python3-psutil
python3-pygments python3-pil python3-nose python3-matplotlib
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bc bsdextrautils ca-certificates
cython3 debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file
gcc-14-base gettext gettext-base groff-base help2man intltool-debian
libarchive-zip-perl libblas3 libdebhelper-perl libelf1 libexpat1
libexpat1-dev libfile-stripnondeterminism-perl libgfortran5 libicu72
libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0
liblocale-gettext-perl libmagic-mgc libmagic1 libperl5.38 libpipeline1
libproc2-0 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.11
libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libpython3.12
libpython3.12-dev libpython3.12-minimal libpython3.12-stdlib libsimde-dev
libsub-override-perl libtool libuchardet0 libxml2 m4 man-db media-types
openssl perl-modules-5.38 po-debconf procps pybuild-plugin-pyproject python3
python3-all python3-all-dev python3-build python3-cykhash python3-decorator
python3-dev python3-distutils python3-hmmlearn python3-iniconfig
python3-installer python3-joblib python3-lib2to3 python3-minimal
python3-numpy python3-packaging python3-pip python3-pkg-resources
python3-pluggy python3-pyproject-hooks python3-pytest python3-scipy
python3-setuptools python3-sklearn python3-sklearn-lib python3-threadpoolctl
python3-toml python3-wheel python3.11 python3.11-dev python3.11-minimal
python3.12 python3.12-dev python3.12-minimal sbuild-build-depends-macs-dummy
zlib1g-dev
The following packages will be upgraded:
libasan8 libatomic1 libcc1-0 libgcc-s1 libgomp1 libstdc++6 libubsan1 perl
perl-base
9 upgraded, 100 newly installed, 0 to remove and 0 not upgraded.
Need to get 87.0 MB of archives.
After this operation, 361 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-7NfWBE/apt_archive ./ sbuild-build-depends-macs-dummy 0.invalid.0 [960 B]
Get:2 http://172.17.4.1/private trixie-staging/main armhf perl-modules-5.38 all 5.38.2-3 [2899 kB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf libperl5.38 armhf 5.38.2-3 [3557 kB]
Get:4 http://172.17.4.1/private trixie-staging/main armhf perl armhf 5.38.2-3 [236 kB]
Get:5 http://172.17.4.1/private trixie-staging/main armhf perl-base armhf 5.38.2-3 [1440 kB]
Get:6 http://172.17.4.1/private trixie-staging/main armhf liblocale-gettext-perl armhf 1.07-6+b1 [14.6 kB]
Get:7 http://172.17.4.1/private trixie-staging/main armhf libpython3.11-minimal armhf 3.11.8-1 [801 kB]
Get:8 http://172.17.4.1/private trixie-staging/main armhf gcc-14-base armhf 14-20240201-3+rpi1 [42.5 kB]
Get:9 http://172.17.4.1/private trixie-staging/main armhf libgcc-s1 armhf 14-20240201-3+rpi1 [36.4 kB]
Get:10 http://172.17.4.1/private trixie-staging/main armhf libexpat1 armhf 2.5.0-2 [76.8 kB]
Get:11 http://172.17.4.1/private trixie-staging/main armhf python3.11-minimal armhf 3.11.8-1 [1676 kB]
Get:12 http://172.17.4.1/private trixie-staging/main armhf python3-minimal armhf 3.11.6-1 [26.2 kB]
Get:13 http://172.17.4.1/private trixie-staging/main armhf media-types all 10.1.0 [26.9 kB]
Get:14 http://172.17.4.1/private trixie-staging/main armhf libpython3.11-stdlib armhf 3.11.8-1 [1697 kB]
Get:15 http://172.17.4.1/private trixie-staging/main armhf python3.11 armhf 3.11.8-1 [597 kB]
Get:16 http://172.17.4.1/private trixie-staging/main armhf libpython3-stdlib armhf 3.11.6-1 [9224 B]
Get:17 http://172.17.4.1/private trixie-staging/main armhf python3 armhf 3.11.6-1 [26.2 kB]
Get:18 http://172.17.4.1/private trixie-staging/main armhf libpython3.12-minimal armhf 3.12.2-1 [792 kB]
Get:19 http://172.17.4.1/private trixie-staging/main armhf python3.12-minimal armhf 3.12.2-1 [1798 kB]
Get:20 http://172.17.4.1/private trixie-staging/main armhf libatomic1 armhf 14-20240201-3+rpi1 [8512 B]
Get:21 http://172.17.4.1/private trixie-staging/main armhf libstdc++6 armhf 14-20240201-3+rpi1 [591 kB]
Get:22 http://172.17.4.1/private trixie-staging/main armhf libuchardet0 armhf 0.0.8-1 [65.5 kB]
Get:23 http://172.17.4.1/private trixie-staging/main armhf groff-base armhf 1.23.0-3 [1033 kB]
Get:24 http://172.17.4.1/private trixie-staging/main armhf bsdextrautils armhf 2.39.3-6 [81.4 kB]
Get:25 http://172.17.4.1/private trixie-staging/main armhf libpipeline1 armhf 1.5.7-1 [33.4 kB]
Get:26 http://172.17.4.1/private trixie-staging/main armhf man-db armhf 2.12.0-3 [1358 kB]
Get:27 http://172.17.4.1/private trixie-staging/main armhf libproc2-0 armhf 2:4.0.4-4 [54.8 kB]
Get:28 http://172.17.4.1/private trixie-staging/main armhf procps armhf 2:4.0.4-4 [848 kB]
Get:29 http://172.17.4.1/private trixie-staging/main armhf bc armhf 1.07.1-3 [101 kB]
Get:30 http://172.17.4.1/private trixie-staging/main armhf openssl armhf 3.1.5-1 [1190 kB]
Get:31 http://172.17.4.1/private trixie-staging/main armhf ca-certificates all 20240203 [158 kB]
Get:32 http://172.17.4.1/private trixie-staging/main armhf libmagic-mgc armhf 1:5.45-2 [314 kB]
Get:33 http://172.17.4.1/private trixie-staging/main armhf libmagic1 armhf 1:5.45-2 [96.1 kB]
Get:34 http://172.17.4.1/private trixie-staging/main armhf file armhf 1:5.45-2 [41.6 kB]
Get:35 http://172.17.4.1/private trixie-staging/main armhf gettext-base armhf 0.21-14 [157 kB]
Get:36 http://172.17.4.1/private trixie-staging/main armhf m4 armhf 1.4.19-4 [256 kB]
Get:37 http://172.17.4.1/private trixie-staging/main armhf autoconf all 2.71-3 [332 kB]
Get:38 http://172.17.4.1/private trixie-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:39 http://172.17.4.1/private trixie-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:40 http://172.17.4.1/private trixie-staging/main armhf autopoint all 0.21-14 [496 kB]
Get:41 http://172.17.4.1/private trixie-staging/main armhf cython3 armhf 3.0.8-1 [3442 kB]
Get:42 http://172.17.4.1/private trixie-staging/main armhf libdebhelper-perl all 13.14.1 [85.6 kB]
Get:43 http://172.17.4.1/private trixie-staging/main armhf libtool all 2.4.7-7 [517 kB]
Get:44 http://172.17.4.1/private trixie-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:45 http://172.17.4.1/private trixie-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:46 http://172.17.4.1/private trixie-staging/main armhf libsub-override-perl all 0.10-1 [10.6 kB]
Get:47 http://172.17.4.1/private trixie-staging/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get:48 http://172.17.4.1/private trixie-staging/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get:49 http://172.17.4.1/private trixie-staging/main armhf libelf1 armhf 0.188-2.1+rpi1 [171 kB]
Get:50 http://172.17.4.1/private trixie-staging/main armhf dwz armhf 0.15-1 [92.4 kB]
Get:51 http://172.17.4.1/private trixie-staging/main armhf libgomp1 armhf 14-20240201-3+rpi1 [108 kB]
Get:52 http://172.17.4.1/private trixie-staging/main armhf libicu72 armhf 72.1-4 [9009 kB]
Get:53 http://172.17.4.1/private trixie-staging/main armhf libxml2 armhf 2.9.14+dfsg-1.3 [571 kB]
Get:54 http://172.17.4.1/private trixie-staging/main armhf gettext armhf 0.21-14 [1203 kB]
Get:55 http://172.17.4.1/private trixie-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:56 http://172.17.4.1/private trixie-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:57 http://172.17.4.1/private trixie-staging/main armhf debhelper all 13.14.1 [890 kB]
Get:58 http://172.17.4.1/private trixie-staging/main armhf python3-lib2to3 all 3.11.5-1 [77.5 kB]
Get:59 http://172.17.4.1/private trixie-staging/main armhf python3-distutils all 3.11.5-1 [131 kB]
Get:60 http://172.17.4.1/private trixie-staging/main armhf python3-pkg-resources all 68.1.2-2 [241 kB]
Get:61 http://172.17.4.1/private trixie-staging/main armhf python3-setuptools all 68.1.2-2 [468 kB]
Get:62 http://172.17.4.1/private trixie-staging/main armhf dh-python all 6.20231223 [108 kB]
Get:63 http://172.17.4.1/private trixie-staging/main armhf help2man armhf 1.49.3 [198 kB]
Get:64 http://172.17.4.1/private trixie-staging/main armhf libasan8 armhf 14-20240201-3+rpi1 [2545 kB]
Get:65 http://172.17.4.1/private trixie-staging/main armhf libblas3 armhf 3.12.0-3 [102 kB]
Get:66 http://172.17.4.1/private trixie-staging/main armhf libcc1-0 armhf 14-20240201-3+rpi1 [31.6 kB]
Get:67 http://172.17.4.1/private trixie-staging/main armhf libexpat1-dev armhf 2.5.0-2 [130 kB]
Get:68 http://172.17.4.1/private trixie-staging/main armhf libgfortran5 armhf 14-20240201-3+rpi1 [257 kB]
Get:69 http://172.17.4.1/private trixie-staging/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get:70 http://172.17.4.1/private trixie-staging/main armhf libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB]
Get:71 http://172.17.4.1/private trixie-staging/main armhf libjs-sphinxdoc all 7.2.6-4 [150 kB]
Get:72 http://172.17.4.1/private trixie-staging/main armhf liblapack3 armhf 3.12.0-3 [1692 kB]
Get:73 http://172.17.4.1/private trixie-staging/main armhf liblbfgsb0 armhf 3.0+dfsg.4-1 [24.4 kB]
Get:74 http://172.17.4.1/private trixie-staging/main armhf libpython3.11 armhf 3.11.8-1 [1670 kB]
Get:75 http://172.17.4.1/private trixie-staging/main armhf zlib1g-dev armhf 1:1.3.dfsg-3 [903 kB]
Get:76 http://172.17.4.1/private trixie-staging/main armhf libpython3.11-dev armhf 3.11.8-1 [3284 kB]
Get:77 http://172.17.4.1/private trixie-staging/main armhf libpython3-dev armhf 3.11.6-1 [9456 B]
Get:78 http://172.17.4.1/private trixie-staging/main armhf libpython3.12-stdlib armhf 3.12.2-1 [1785 kB]
Get:79 http://172.17.4.1/private trixie-staging/main armhf libpython3.12 armhf 3.12.2-1 [1798 kB]
Get:80 http://172.17.4.1/private trixie-staging/main armhf libpython3.12-dev armhf 3.12.2-1 [4121 kB]
Get:81 http://172.17.4.1/private trixie-staging/main armhf libpython3-all-dev armhf 3.11.6-1 [1072 B]
Get:82 http://172.17.4.1/private trixie-staging/main armhf libsimde-dev all 0.7.6-1 [384 kB]
Get:83 http://172.17.4.1/private trixie-staging/main armhf libubsan1 armhf 14-20240201-3+rpi1 [1031 kB]
Get:84 http://172.17.4.1/private trixie-staging/main armhf python3-packaging all 23.2-1 [44.8 kB]
Get:85 http://172.17.4.1/private trixie-staging/main armhf python3-pyproject-hooks all 1.0.0-2 [10.6 kB]
Get:86 http://172.17.4.1/private trixie-staging/main armhf python3-toml all 0.10.2-1 [16.2 kB]
Get:87 http://172.17.4.1/private trixie-staging/main armhf python3-wheel all 0.42.0-1 [52.1 kB]
Get:88 http://172.17.4.1/private trixie-staging/main armhf python3-build all 1.0.3-2 [31.2 kB]
Get:89 http://172.17.4.1/private trixie-staging/main armhf python3-installer all 0.7.0+dfsg1-2 [19.1 kB]
Get:90 http://172.17.4.1/private trixie-staging/main armhf pybuild-plugin-pyproject all 6.20231223 [10.6 kB]
Get:91 http://172.17.4.1/private trixie-staging/main armhf python3.12 armhf 3.12.2-1 [653 kB]
Get:92 http://172.17.4.1/private trixie-staging/main armhf python3-all armhf 3.11.6-1 [1060 B]
Get:93 http://172.17.4.1/private trixie-staging/main armhf python3.11-dev armhf 3.11.8-1 [508 kB]
Get:94 http://172.17.4.1/private trixie-staging/main armhf python3-dev armhf 3.11.6-1 [26.1 kB]
Get:95 http://172.17.4.1/private trixie-staging/main armhf python3.12-dev armhf 3.12.2-1 [506 kB]
Get:96 http://172.17.4.1/private trixie-staging/main armhf python3-all-dev armhf 3.11.6-1 [1076 B]
Get:97 http://172.17.4.1/private trixie-staging/main armhf python3-cykhash armhf 2.0.0-3 [293 kB]
Get:98 http://172.17.4.1/private trixie-staging/main armhf python3-decorator all 5.1.1-5 [15.1 kB]
Get:99 http://172.17.4.1/private trixie-staging/main armhf python3-numpy armhf 1:1.24.2-2 [3164 kB]
Get:100 http://172.17.4.1/private trixie-staging/main armhf python3-scipy armhf 1.10.1-5+rpi1 [13.6 MB]
Get:101 http://172.17.4.1/private trixie-staging/main armhf python3-joblib all 1.3.2-1 [217 kB]
Get:102 http://172.17.4.1/private trixie-staging/main armhf python3-threadpoolctl all 3.1.0-1 [21.2 kB]
Get:103 http://172.17.4.1/private trixie-staging/main armhf python3-sklearn-lib armhf 1.2.1+dfsg-1 [2061 kB]
Get:104 http://172.17.4.1/private trixie-staging/main armhf python3-sklearn all 1.2.1+dfsg-1 [2103 kB]
Get:105 http://172.17.4.1/private trixie-staging/main armhf python3-hmmlearn armhf 0.3.0-3 [103 kB]
Get:106 http://172.17.4.1/private trixie-staging/main armhf python3-iniconfig all 1.1.1-2 [6396 B]
Get:107 http://172.17.4.1/private trixie-staging/main armhf python3-pip all 24.0+dfsg-1 [1342 kB]
Get:108 http://172.17.4.1/private trixie-staging/main armhf python3-pluggy all 1.4.0-1 [26.2 kB]
Get:109 http://172.17.4.1/private trixie-staging/main armhf python3-pytest all 7.4.4-3 [239 kB]
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Selecting previously unselected package python3-pip.
Preparing to unpack .../85-python3-pip_24.0+dfsg-1_all.deb ...
Unpacking python3-pip (24.0+dfsg-1) ...
Selecting previously unselected package python3-pluggy.
Preparing to unpack .../86-python3-pluggy_1.4.0-1_all.deb ...
Unpacking python3-pluggy (1.4.0-1) ...
Selecting previously unselected package python3-pytest.
Preparing to unpack .../87-python3-pytest_7.4.4-3_all.deb ...
Unpacking python3-pytest (7.4.4-3) ...
Selecting previously unselected package sbuild-build-depends-macs-dummy.
Preparing to unpack .../88-sbuild-build-depends-macs-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-macs-dummy (0.invalid.0) ...
Setting up media-types (10.1.0) ...
Setting up libpipeline1:armhf (1.5.7-1) ...
Setting up libsimde-dev (0.7.6-1) ...
Setting up libicu72:armhf (72.1-4) ...
Setting up bsdextrautils (2.39.3-6) ...
Setting up libmagic-mgc (1:5.45-2) ...
Setting up libpython3.11-stdlib:armhf (3.11.8-1) ...
Setting up libpython3.12-minimal:armhf (3.12.2-1) ...
Setting up libmagic1:armhf (1:5.45-2) ...
Setting up bc (1.07.1-3) ...
Setting up gettext-base (0.21-14) ...
Setting up m4 (1.4.19-4) ...
Setting up file (1:5.45-2) ...
Setting up libgomp1:armhf (14-20240201-3+rpi1) ...
Setting up autotools-dev (20220109.1) ...
Setting up libblas3:armhf (3.12.0-3) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libexpat1-dev:armhf (2.5.0-2) ...
Setting up perl-modules-5.38 (5.38.2-3) ...
Setting up libproc2-0:armhf (2:4.0.4-4) ...
Setting up autopoint (0.21-14) ...
Setting up libgfortran5:armhf (14-20240201-3+rpi1) ...
Setting up libubsan1:armhf (14-20240201-3+rpi1) ...
Setting up zlib1g-dev:armhf (1:1.3.dfsg-3) ...
Setting up libasan8:armhf (14-20240201-3+rpi1) ...
Setting up libuchardet0:armhf (0.0.8-1) ...
Setting up procps (2:4.0.4-4) ...
Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
Setting up openssl (3.1.5-1) ...
Setting up libelf1:armhf (0.188-2.1+rpi1) ...
Setting up libxml2:armhf (2.9.14+dfsg-1.3) ...
Setting up libcc1-0:armhf (14-20240201-3+rpi1) ...
Setting up liblocale-gettext-perl (1.07-6+b1) ...
Setting up libpython3-stdlib:armhf (3.11.6-1) ...
Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ...
Setting up python3.12-minimal (3.12.2-1) ...
Setting up python3.11 (3.11.8-1) ...
Setting up liblapack3:armhf (3.12.0-3) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up gettext (0.21-14) ...
Setting up libpython3.12-stdlib:armhf (3.12.2-1) ...
Setting up libpython3.11:armhf (3.11.8-1) ...
Setting up libtool (2.4.7-7) ...
Setting up python3.12 (3.12.2-1) ...
Setting up libperl5.38:armhf (5.38.2-3) ...
Setting up python3 (3.11.6-1) ...
Setting up python3-cykhash (2.0.0-3) ...
Setting up ca-certificates (20240203) ...
Updating certificates in /etc/ssl/certs...
146 added, 0 removed; done.
Setting up python3-decorator (5.1.1-5) ...
Setting up perl (5.38.2-3) ...
Setting up python3-packaging (23.2-1) ...
Setting up python3-pyproject-hooks (1.0.0-2) ...
Setting up libpython3.11-dev:armhf (3.11.8-1) ...
Setting up cython3 (3.0.8-1) ...
Setting up libjs-sphinxdoc (7.2.6-4) ...
Setting up python3-toml (0.10.2-1) ...
Setting up python3-installer (0.7.0+dfsg1-2) ...
Setting up autoconf (2.71-3) ...
Setting up python3-pluggy (1.4.0-1) ...
Setting up dwz (0.15-1) ...
Setting up groff-base (1.23.0-3) ...
Setting up libsub-override-perl (0.10-1) ...
Setting up python3-lib2to3 (3.11.5-1) ...
Setting up libpython3.12:armhf (3.12.2-1) ...
Setting up liblbfgsb0:armhf (3.0+dfsg.4-1) ...
Setting up python3-pkg-resources (68.1.2-2) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up python3-distutils (3.11.5-1) ...
python3.12: can't get files for byte-compilation
Setting up python3-iniconfig (1.1.1-2) ...
Setting up libpython3-dev:armhf (3.11.6-1) ...
Setting up python3-setuptools (68.1.2-2) ...
Setting up python3-joblib (1.3.2-1) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up python3.11-dev (3.11.8-1) ...
Setting up python3-pytest (7.4.4-3) ...
Setting up libdebhelper-perl (13.14.1) ...
Setting up python3-threadpoolctl (3.1.0-1) ...
Setting up python3-all (3.11.6-1) ...
Setting up libpython3.12-dev:armhf (3.12.2-1) ...
Setting up man-db (2.12.0-3) ...
Not building database; man-db/auto-update is not 'true'.
Setting up python3-wheel (0.42.0-1) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up help2man (1.49.3) ...
Setting up dh-autoreconf (20) ...
Setting up libpython3-all-dev:armhf (3.11.6-1) ...
Setting up python3-dev (3.11.6-1) ...
Setting up python3.12-dev (3.12.2-1) ...
Setting up python3-pip (24.0+dfsg-1) ...
Setting up python3-numpy (1:1.24.2-2) ...
Setting up python3-build (1.0.3-2) ...
Setting up dh-python (6.20231223) ...
Setting up python3-all-dev (3.11.6-1) ...
Setting up libfile-stripnondeterminism-perl (1.13.1-1) ...
Setting up python3-scipy (1.10.1-5+rpi1) ...
Setting up pybuild-plugin-pyproject (6.20231223) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up python3-sklearn-lib:armhf (1.2.1+dfsg-1) ...
Setting up python3-sklearn (1.2.1+dfsg-1) ...
Setting up dh-strip-nondeterminism (1.13.1-1) ...
Setting up python3-hmmlearn (0.3.0-3) ...
Setting up debhelper (13.14.1) ...
Setting up sbuild-build-depends-macs-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.37-15~deb13u1+rpi1) ...
Processing triggers for ca-certificates (20240203) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.41-6+rpi1 dpkg-dev_1.22.4+rpi1 g++-12_12.3.0-14+rpi1 g++-13_13.2.0-9+rpi1 gcc-12_12.3.0-14+rpi1 gcc-13_13.2.0-9+rpi1 libc6-dev_2.37-15~deb13u1+rpi1 libstdc++-12-dev_12.3.0-14+rpi1 libstdc++-13-dev_13.2.0-9+rpi1 libstdc++6_14-20240201-3+rpi1 linux-libc-dev_6.5.6-1+rpi1+b1
Package versions: adduser_3.137 apt_2.7.11 aptitude_0.8.13-5 aptitude-common_0.8.13-5 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13+rpi1 base-passwd_3.6.3 bash_5.2.21-2 bc_1.07.1-3 binutils_2.41-6+rpi1 binutils-arm-linux-gnueabihf_2.41-6+rpi1 binutils-common_2.41-6+rpi1 bsdextrautils_2.39.3-6 bsdutils_1:2.39.3-6 build-essential_12.10 bzip2_1.0.8-5+b2 ca-certificates_20240203 coreutils_9.4-3 cpp_4:13.2.0-1+rpi1 cpp-12_12.3.0-14+rpi1 cpp-13_13.2.0-9+rpi1 cython3_3.0.8-1 dash_0.5.12-6 debconf_1.5.86 debhelper_13.14.1 debianutils_5.16 dh-autoreconf_20 dh-python_6.20231223 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dirmngr_2.2.40-1.1 dpkg_1.22.4+rpi1 dpkg-dev_1.22.4+rpi1 dwz_0.15-1 e2fsprogs_1.47.0-2 fakeroot_1.33-1 file_1:5.45-2 findutils_4.9.0-5 g++_4:13.2.0-1+rpi1 g++-12_12.3.0-14+rpi1 g++-13_13.2.0-9+rpi1 gcc_4:13.2.0-1+rpi1 gcc-12_12.3.0-14+rpi1 gcc-12-base_12.3.0-14+rpi1 gcc-13_13.2.0-9+rpi1 gcc-13-base_13.2.0-9+rpi1 gcc-14-base_14-20240201-3+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-14 gettext-base_0.21-14 gnupg_2.2.40-1.1 gnupg-l10n_2.2.40-1.1 gnupg-utils_2.2.40-1.1 gpg_2.2.40-1.1 gpg-agent_2.2.40-1.1 gpg-wks-client_2.2.40-1.1 gpg-wks-server_2.2.40-1.1 gpgconf_2.2.40-1.1 gpgsm_2.2.40-1.1 gpgv_2.2.40-1.1 grep_3.11-4 groff-base_1.23.0-3 gzip_1.12-1 help2man_1.49.3 hostname_3.23+nmu2 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 iputils-ping_3:20240117-1 krb5-locales_1.20.1-5 libacl1_2.3.2-1 libapt-pkg6.0_2.7.11 libarchive-zip-perl_1.68-1 libasan8_14-20240201-3+rpi1 libassuan0_2.5.6-1 libatomic1_14-20240201-3+rpi1 libattr1_1:2.5.2-1 libaudit-common_1:3.1.2-2 libaudit1_1:3.1.2-2 libbinutils_2.41-6+rpi1 libblas3_3.12.0-3 libblkid1_2.39.3-6 libboost-iostreams1.74.0_1.74.0+ds1-23 libbz2-1.0_1.0.8-5+b2 libc-bin_2.37-15~deb13u1+rpi1 libc-dev-bin_2.37-15~deb13u1+rpi1 libc6_2.37-15~deb13u1+rpi1 libc6-dev_2.37-15~deb13u1+rpi1 libcap-ng0_0.8.4-2 libcap2_1:2.66-5 libcap2-bin_1:2.66-5 libcc1-0_14-20240201-3+rpi1 libcom-err2_1.47.0-2 libcrypt-dev_1:4.4.36-4 libcrypt1_1:4.4.36-4 libctf-nobfd0_2.41-6+rpi1 libctf0_2.41-6+rpi1 libcwidget4_0.5.18-6 libdb5.3_5.3.28+dfsg2-4 libdebconfclient0_0.271 libdebhelper-perl_13.14.1 libdpkg-perl_1.22.4+rpi1 libelf1_0.188-2.1+rpi1 libexpat1_2.5.0-2 libexpat1-dev_2.5.0-2 libext2fs2_1.47.0-2 libfakeroot_1.33-1 libffi8_3.4.4-2 libfile-find-rule-perl_0.34-3 libfile-stripnondeterminism-perl_1.13.1-1 libgcc-12-dev_12.3.0-14+rpi1 libgcc-13-dev_13.2.0-9+rpi1 libgcc-s1_14-20240201-3+rpi1 libgcrypt20_1.10.3-2 libgdbm-compat4_1.23-5 libgdbm6_1.23-5 libgfortran5_14-20240201-3+rpi1 libgmp10_2:6.3.0+dfsg-2 libgnutls30_3.8.3-1 libgomp1_14-20240201-3+rpi1 libgpg-error0_1.47-3 libgssapi-krb5-2_1.20.1-5 libhogweed6_3.9.1-2 libicu72_72.1-4 libidn2-0_2.3.7-2 libisl23_0.26-3 libjansson4_2.14-2 libjs-jquery_3.6.1+dfsg+~3.5.14-1 libjs-sphinxdoc_7.2.6-4 libjs-underscore_1.13.4~dfsg+~1.11.4-3 libk5crypto3_1.20.1-5 libkeyutils1_1.6.3-3 libkrb5-3_1.20.1-5 libkrb5support0_1.20.1-5 libksba8_1.6.5-2 liblapack3_3.12.0-3 liblbfgsb0_3.0+dfsg.4-1 libldap-2.4-2_2.4.59+dfsg-1+b1 libldap-2.5-0_2.5.13+dfsg-5+rpi1+b1 libldap-common_2.5.13+dfsg-5+rpi1 liblocale-gettext-perl_1.07-6+b1 liblz4-1_1.9.4-1+rpi1+b1 liblzma5_5.4.5-0.3 libmagic-mgc_1:5.45-2 libmagic1_1:5.45-2 libmd0_1.1.0-2 libmount1_2.39.3-6 libmpc3_1.3.1-1 libmpfr6_4.2.1-1 libncursesw6_6.4+20240113-1 libnettle8_3.9.1-2 libnpth0_1.6-3 libnsl-dev_1.3.0-3 libnsl2_1.3.0-3 libnumber-compare-perl_0.03-3 libp11-kit0_0.25.3-4 libpam-cap_1:2.66-5 libpam-modules_1.5.2-9.1 libpam-modules-bin_1.5.2-9.1 libpam-runtime_1.5.2-9.1 libpam0g_1.5.2-9.1 libpcre2-8-0_10.42-4 libpcre3_2:8.39-15 libperl5.36_5.36.0-10 libperl5.38_5.38.2-3 libpipeline1_1.5.7-1 libproc2-0_2:4.0.4-4 libpython3-all-dev_3.11.6-1 libpython3-dev_3.11.6-1 libpython3-stdlib_3.11.6-1 libpython3.11_3.11.8-1 libpython3.11-dev_3.11.8-1 libpython3.11-minimal_3.11.8-1 libpython3.11-stdlib_3.11.8-1 libpython3.12_3.12.2-1 libpython3.12-dev_3.12.2-1 libpython3.12-minimal_3.12.2-1 libpython3.12-stdlib_3.12.2-1 libreadline8_8.2-3 libsasl2-2_2.1.28+dfsg1-4 libsasl2-modules-db_2.1.28+dfsg1-4 libseccomp2_2.5.5-1+rpi1 libselinux1_3.5-2 libsemanage-common_3.5-1 libsemanage2_3.5-1 libsepol1_3.1-1 libsepol2_3.5-2 libsframe1_2.41-6+rpi1 libsigc++-2.0-0v5_2.12.1-1 libsimde-dev_0.7.6-1 libsmartcols1_2.39.3-6 libsqlite3-0_3.45.1-1 libss2_1.47.0-2 libssl1.1_1.1.1o-1 libssl3_3.1.5-1 libstdc++-12-dev_12.3.0-14+rpi1 libstdc++-13-dev_13.2.0-9+rpi1 libstdc++6_14-20240201-3+rpi1 libsub-override-perl_0.10-1 libsystemd0_255.3-1+rpi1 libtasn1-6_4.19.0-3 libtext-glob-perl_0.11-3 libtinfo6_6.4+20240113-1 libtirpc-common_1.3.4+ds-1 libtirpc-dev_1.3.4+ds-1 libtirpc3_1.3.4+ds-1 libtool_2.4.7-7 libubsan1_14-20240201-3+rpi1 libuchardet0_0.0.8-1 libudev1_255.3-1+rpi1 libunistring2_1.0-2 libunistring5_1.1-2 libuuid1_2.39.3-6 libxapian30_1.4.22-1 libxml2_2.9.14+dfsg-1.3 libxxhash0_0.8.2-2 libzstd1_1.5.5+dfsg2-2 linux-libc-dev_6.5.6-1+rpi1+b1 login_1:4.13+dfsg1-4 logsave_1.47.0-2 lsb-base_11.6+rpi1 m4_1.4.19-4 make_4.3-4.1 man-db_2.12.0-3 mawk_1.3.4.20240123-1 media-types_10.1.0 mount_2.39.3-6 nano_7.2-2 ncurses-base_6.4+20240113-1 ncurses-bin_6.4+20240113-1 netbase_6.4 openssl_3.1.5-1 passwd_1:4.13+dfsg1-4 patch_2.7.6-7 perl_5.38.2-3 perl-base_5.38.2-3 perl-modules-5.36_5.36.0-10 perl-modules-5.38_5.38.2-3 pinentry-curses_1.2.1-3 po-debconf_1.0.21+nmu1 procps_2:4.0.4-4 pybuild-plugin-pyproject_6.20231223 python3_3.11.6-1 python3-all_3.11.6-1 python3-all-dev_3.11.6-1 python3-build_1.0.3-2 python3-cykhash_2.0.0-3 python3-decorator_5.1.1-5 python3-dev_3.11.6-1 python3-distutils_3.11.5-1 python3-hmmlearn_0.3.0-3 python3-iniconfig_1.1.1-2 python3-installer_0.7.0+dfsg1-2 python3-joblib_1.3.2-1 python3-lib2to3_3.11.5-1 python3-minimal_3.11.6-1 python3-numpy_1:1.24.2-2 python3-packaging_23.2-1 python3-pip_24.0+dfsg-1 python3-pkg-resources_68.1.2-2 python3-pluggy_1.4.0-1 python3-pyproject-hooks_1.0.0-2 python3-pytest_7.4.4-3 python3-scipy_1.10.1-5+rpi1 python3-setuptools_68.1.2-2 python3-sklearn_1.2.1+dfsg-1 python3-sklearn-lib_1.2.1+dfsg-1 python3-threadpoolctl_3.1.0-1 python3-toml_0.10.2-1 python3-wheel_0.42.0-1 python3.11_3.11.8-1 python3.11-dev_3.11.8-1 python3.11-minimal_3.11.8-1 python3.12_3.12.2-1 python3.12-dev_3.12.2-1 python3.12-minimal_3.12.2-1 raspbian-archive-keyring_20120528.2 readline-common_8.2-3 rpcsvc-proto_1.4.3-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-macs-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.22 sgml-base_1.31 sysvinit-utils_3.08-6 tar_1.35+dfsg-3 tzdata_2024a-1 usrmerge_39 util-linux_2.39.3-6 util-linux-extra_2.39.3-6 xz-utils_5.4.5-0.3 zlib1g_1:1.3.dfsg-3 zlib1g-dev_1:1.3.dfsg-3
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: Signature made Sat Feb 24 12:06:17 2024 UTC
gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./macs_3.0.1-1.dsc: no acceptable signature found
dpkg-source: info: extracting macs in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking macs_3.0.1.orig.tar.gz
dpkg-source: info: unpacking macs_3.0.1-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying invalid_escape_sequence
dpkg-source: info: applying adapt_to_prelease_hmmlearn.patch
dpkg-source: info: applying python3
dpkg-source: info: applying keep_debug
dpkg-source: info: applying simde.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=trixie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=trixie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=trixie-staging-armhf-sbuild-f55c6ead-2aa2-4a09-b46c-479d1b5c5cff
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package macs
dpkg-buildpackage: info: source version 3.0.1-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
dpkg-source: info: using options from macs-3.0.1/debian/source/options: --extend-diff-ignore=(^|/)(.*\.c)$|.*[.]egg-info/
debian/rules clean
dh clean --buildsystem=pybuild
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
rm -Rf test/macs3.0.1-1* test/speedtest*
rm -f debian/*.1 debian/*-man-include
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary-arch
dh binary-arch --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
for pyx in $(find MACS3/ -name "*.pyx"); do \
rm -f ${pyx%%.pyx}.{h,c}; touch ${pyx}; done
dh_auto_build
I: pybuild plugin_pyproject:129: Building wheel for python3.12 with "build" module
I: pybuild base:305: python3.12 -m build --skip-dependency-check --no-isolation --wheel --outdir /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_MACS3
* Building wheel...
Traceback (most recent call last):
File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 23, in <module>
from . import multiarray
File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in <module>
from . import overrides
File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 6, in <module>
from numpy.core._multiarray_umath import (
ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/usr/lib/python3/dist-packages/pyproject_hooks/_in_process/_in_process.py", line 353, in <module>
main()
File "/usr/lib/python3/dist-packages/pyproject_hooks/_in_process/_in_process.py", line 335, in main
json_out['return_val'] = hook(**hook_input['kwargs'])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/python3/dist-packages/pyproject_hooks/_in_process/_in_process.py", line 251, in build_wheel
return _build_backend().build_wheel(wheel_directory, config_settings,
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/python3/dist-packages/setuptools/build_meta.py", line 434, in build_wheel
return self._build_with_temp_dir(
^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/python3/dist-packages/setuptools/build_meta.py", line 419, in _build_with_temp_dir
self.run_setup()
File "/usr/lib/python3/dist-packages/setuptools/build_meta.py", line 507, in run_setup
super(_BuildMetaLegacyBackend, self).run_setup(setup_script=setup_script)
File "/usr/lib/python3/dist-packages/setuptools/build_meta.py", line 341, in run_setup
exec(code, locals())
File "<string>", line 18, in <module>
File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 141, in <module>
from . import core
File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 49, in <module>
raise ImportError(msg)
ImportError:
IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
Importing the numpy C-extensions failed. This error can happen for
many reasons, often due to issues with your setup or how NumPy was
installed.
We have compiled some common reasons and troubleshooting tips at:
https://numpy.org/devdocs/user/troubleshooting-importerror.html
Please note and check the following:
* The Python version is: Python3.12 from "/usr/bin/python3.12"
* The NumPy version is: "1.24.2"
and make sure that they are the versions you expect.
Please carefully study the documentation linked above for further help.
Original error was: No module named 'numpy.core._multiarray_umath'
ERROR Backend subprocess exited when trying to invoke build_wheel
E: pybuild pybuild:391: build: plugin pyproject failed with: exit code=1: python3.12 -m build --skip-dependency-check --no-isolation --wheel --outdir /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_MACS3
I: pybuild plugin_pyproject:129: Building wheel for python3.11 with "build" module
I: pybuild base:305: python3.11 -m build --skip-dependency-check --no-isolation --wheel --outdir /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS3
* Building wheel...
Compiling MACS3/Signal/HMMR_EM.pyx because it changed.
Compiling MACS3/Signal/HMMR_Signal_Processing.pyx because it changed.
Compiling MACS3/Signal/HMMR_HMM.pyx because it changed.
Compiling MACS3/Signal/Prob.pyx because it changed.
Compiling MACS3/Signal/Region.pyx because it changed.
Compiling MACS3/Signal/Pileup.pyx because it changed.
Compiling MACS3/Signal/PileupV2.pyx because it changed.
Compiling MACS3/Signal/PeakModel.pyx because it changed.
Compiling MACS3/Signal/PeakDetect.pyx because it changed.
Compiling MACS3/Signal/SignalProcessing.pyx because it changed.
Compiling MACS3/Signal/FixWidthTrack.pyx because it changed.
Compiling MACS3/Signal/PairedEndTrack.pyx because it changed.
Compiling MACS3/Signal/BedGraph.pyx because it changed.
Compiling MACS3/Signal/ScoreTrack.pyx because it changed.
Compiling MACS3/Signal/CallPeakUnit.pyx because it changed.
Compiling MACS3/Signal/VariantStat.pyx because it changed.
Compiling MACS3/Signal/ReadAlignment.pyx because it changed.
Compiling MACS3/Signal/RACollection.pyx because it changed.
Compiling MACS3/Signal/UnitigRACollection.pyx because it changed.
Compiling MACS3/Signal/PosReadsInfo.pyx because it changed.
Compiling MACS3/Signal/PeakVariants.pyx because it changed.
Compiling MACS3/IO/Parser.pyx because it changed.
Compiling MACS3/IO/PeakIO.pyx because it changed.
Compiling MACS3/IO/BedGraphIO.pyx because it changed.
Compiling MACS3/IO/BAM.pyx because it changed.
[ 1/25] Cythonizing MACS3/IO/BAM.pyx
[ 2/25] Cythonizing MACS3/IO/BedGraphIO.pyx
[ 3/25] Cythonizing MACS3/IO/Parser.pyx
[ 4/25] Cythonizing MACS3/IO/PeakIO.pyx
[ 5/25] Cythonizing MACS3/Signal/BedGraph.pyx
[ 6/25] Cythonizing MACS3/Signal/CallPeakUnit.pyx
[ 7/25] Cythonizing MACS3/Signal/FixWidthTrack.pyx
[ 8/25] Cythonizing MACS3/Signal/HMMR_EM.pyx
[ 9/25] Cythonizing MACS3/Signal/HMMR_HMM.pyx
[10/25] Cythonizing MACS3/Signal/HMMR_Signal_Processing.pyx
[11/25] Cythonizing MACS3/Signal/PairedEndTrack.pyx
[12/25] Cythonizing MACS3/Signal/PeakDetect.pyx
[13/25] Cythonizing MACS3/Signal/PeakModel.pyx
[14/25] Cythonizing MACS3/Signal/PeakVariants.pyx
[15/25] Cythonizing MACS3/Signal/Pileup.pyx
[16/25] Cythonizing MACS3/Signal/PileupV2.pyx
[17/25] Cythonizing MACS3/Signal/PosReadsInfo.pyx
[18/25] Cythonizing MACS3/Signal/Prob.pyx
[19/25] Cythonizing MACS3/Signal/RACollection.pyx
[20/25] Cythonizing MACS3/Signal/ReadAlignment.pyx
[21/25] Cythonizing MACS3/Signal/Region.pyx
[22/25] Cythonizing MACS3/Signal/ScoreTrack.pyx
[23/25] Cythonizing MACS3/Signal/SignalProcessing.pyx
[24/25] Cythonizing MACS3/Signal/UnitigRACollection.pyx
[25/25] Cythonizing MACS3/Signal/VariantStat.pyx
running bdist_wheel
running build
running build_py
creating build
creating build/lib.linux-armv7l-cpython-311
creating build/lib.linux-armv7l-cpython-311/MACS3
copying MACS3/__init__.py -> build/lib.linux-armv7l-cpython-311/MACS3
creating build/lib.linux-armv7l-cpython-311/MACS3/IO
copying MACS3/IO/OutputWriter.py -> build/lib.linux-armv7l-cpython-311/MACS3/IO
copying MACS3/IO/__init__.py -> build/lib.linux-armv7l-cpython-311/MACS3/IO
creating build/lib.linux-armv7l-cpython-311/MACS3/Signal
copying MACS3/Signal/__init__.py -> build/lib.linux-armv7l-cpython-311/MACS3/Signal
creating build/lib.linux-armv7l-cpython-311/MACS3/Commands
copying MACS3/Commands/__init__.py -> build/lib.linux-armv7l-cpython-311/MACS3/Commands
copying MACS3/Commands/bdgbroadcall_cmd.py -> build/lib.linux-armv7l-cpython-311/MACS3/Commands
copying MACS3/Commands/bdgcmp_cmd.py -> build/lib.linux-armv7l-cpython-311/MACS3/Commands
copying MACS3/Commands/bdgdiff_cmd.py -> build/lib.linux-armv7l-cpython-311/MACS3/Commands
copying MACS3/Commands/bdgopt_cmd.py -> build/lib.linux-armv7l-cpython-311/MACS3/Commands
copying MACS3/Commands/bdgpeakcall_cmd.py -> build/lib.linux-armv7l-cpython-311/MACS3/Commands
copying MACS3/Commands/callpeak_cmd.py -> build/lib.linux-armv7l-cpython-311/MACS3/Commands
copying MACS3/Commands/callvar_cmd.py -> build/lib.linux-armv7l-cpython-311/MACS3/Commands
copying MACS3/Commands/cmbreps_cmd.py -> build/lib.linux-armv7l-cpython-311/MACS3/Commands
copying MACS3/Commands/diffpeak_cmd.py -> build/lib.linux-armv7l-cpython-311/MACS3/Commands
copying MACS3/Commands/filterdup_cmd.py -> build/lib.linux-armv7l-cpython-311/MACS3/Commands
copying MACS3/Commands/hmmratac_cmd.py -> build/lib.linux-armv7l-cpython-311/MACS3/Commands
copying MACS3/Commands/pileup_cmd.py -> build/lib.linux-armv7l-cpython-311/MACS3/Commands
copying MACS3/Commands/predictd_cmd.py -> build/lib.linux-armv7l-cpython-311/MACS3/Commands
copying MACS3/Commands/randsample_cmd.py -> build/lib.linux-armv7l-cpython-311/MACS3/Commands
copying MACS3/Commands/refinepeak_cmd.py -> build/lib.linux-armv7l-cpython-311/MACS3/Commands
creating build/lib.linux-armv7l-cpython-311/MACS3/Utilities
copying MACS3/Utilities/Constants.py -> build/lib.linux-armv7l-cpython-311/MACS3/Utilities
copying MACS3/Utilities/Logger.py -> build/lib.linux-armv7l-cpython-311/MACS3/Utilities
copying MACS3/Utilities/OptValidator.py -> build/lib.linux-armv7l-cpython-311/MACS3/Utilities
copying MACS3/Utilities/__init__.py -> build/lib.linux-armv7l-cpython-311/MACS3/Utilities
running build_ext
building 'MACS3.Signal.HMMR_EM' extension
creating build/temp.linux-armv7l-cpython-311
creating build/temp.linux-armv7l-cpython-311/MACS3
creating build/temp.linux-armv7l-cpython-311/MACS3/Signal
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS3/Signal/HMMR_EM.c -o build/temp.linux-armv7l-cpython-311/MACS3/Signal/HMMR_EM.o -w -Ofast
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-311/MACS3/Signal/HMMR_EM.o -L/usr/lib/arm-linux-gnueabihf -lm -o build/lib.linux-armv7l-cpython-311/MACS3/Signal/HMMR_EM.cpython-311-arm-linux-gnueabihf.so
building 'MACS3.Signal.HMMR_Signal_Processing' extension
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS3/Signal/HMMR_Signal_Processing.c -o build/temp.linux-armv7l-cpython-311/MACS3/Signal/HMMR_Signal_Processing.o -w -Ofast
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-311/MACS3/Signal/HMMR_Signal_Processing.o -L/usr/lib/arm-linux-gnueabihf -lm -o build/lib.linux-armv7l-cpython-311/MACS3/Signal/HMMR_Signal_Processing.cpython-311-arm-linux-gnueabihf.so
building 'MACS3.Signal.HMMR_HMM' extension
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS3/Signal/HMMR_HMM.c -o build/temp.linux-armv7l-cpython-311/MACS3/Signal/HMMR_HMM.o -w -Ofast
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-311/MACS3/Signal/HMMR_HMM.o -L/usr/lib/arm-linux-gnueabihf -lm -o build/lib.linux-armv7l-cpython-311/MACS3/Signal/HMMR_HMM.cpython-311-arm-linux-gnueabihf.so
building 'MACS3.Signal.Prob' extension
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS3/Signal/Prob.c -o build/temp.linux-armv7l-cpython-311/MACS3/Signal/Prob.o -w -Ofast
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-311/MACS3/Signal/Prob.o -L/usr/lib/arm-linux-gnueabihf -lm -o build/lib.linux-armv7l-cpython-311/MACS3/Signal/Prob.cpython-311-arm-linux-gnueabihf.so
building 'MACS3.Signal.Region' extension
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS3/Signal/Region.c -o build/temp.linux-armv7l-cpython-311/MACS3/Signal/Region.o -w -Ofast
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-311/MACS3/Signal/Region.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/MACS3/Signal/Region.cpython-311-arm-linux-gnueabihf.so
building 'MACS3.Signal.Pileup' extension
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS3/Signal/Pileup.c -o build/temp.linux-armv7l-cpython-311/MACS3/Signal/Pileup.o -w -Ofast
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS3/Signal/cPosValCalculation.c -o build/temp.linux-armv7l-cpython-311/MACS3/Signal/cPosValCalculation.o -w -Ofast
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-311/MACS3/Signal/Pileup.o build/temp.linux-armv7l-cpython-311/MACS3/Signal/cPosValCalculation.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/MACS3/Signal/Pileup.cpython-311-arm-linux-gnueabihf.so
building 'MACS3.Signal.PileupV2' extension
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS3/Signal/PileupV2.c -o build/temp.linux-armv7l-cpython-311/MACS3/Signal/PileupV2.o -w -Ofast
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-311/MACS3/Signal/PileupV2.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/MACS3/Signal/PileupV2.cpython-311-arm-linux-gnueabihf.so
building 'MACS3.Signal.PeakModel' extension
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS3/Signal/PeakModel.c -o build/temp.linux-armv7l-cpython-311/MACS3/Signal/PeakModel.o -w -Ofast
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-311/MACS3/Signal/PeakModel.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/MACS3/Signal/PeakModel.cpython-311-arm-linux-gnueabihf.so
building 'MACS3.Signal.PeakDetect' extension
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c MACS3/Signal/PeakDetect.c -o build/temp.linux-armv7l-cpython-311/MACS3/Signal/PeakDetect.o -w -Ofast
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-311/MACS3/Signal/PeakDetect.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/MACS3/Signal/PeakDetect.cpython-311-arm-linux-gnueabihf.so
building 'MACS3.Signal.SignalProcessing' extension
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS3/Signal/SignalProcessing.c -o build/temp.linux-armv7l-cpython-311/MACS3/Signal/SignalProcessing.o -w -Ofast
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-311/MACS3/Signal/SignalProcessing.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/MACS3/Signal/SignalProcessing.cpython-311-arm-linux-gnueabihf.so
building 'MACS3.Signal.FixWidthTrack' extension
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS3/Signal/FixWidthTrack.c -o build/temp.linux-armv7l-cpython-311/MACS3/Signal/FixWidthTrack.o -w -Ofast
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-311/MACS3/Signal/FixWidthTrack.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/MACS3/Signal/FixWidthTrack.cpython-311-arm-linux-gnueabihf.so
building 'MACS3.Signal.PairedEndTrack' extension
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS3/Signal/PairedEndTrack.c -o build/temp.linux-armv7l-cpython-311/MACS3/Signal/PairedEndTrack.o -w -Ofast
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-311/MACS3/Signal/PairedEndTrack.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/MACS3/Signal/PairedEndTrack.cpython-311-arm-linux-gnueabihf.so
building 'MACS3.Signal.BedGraph' extension
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS3/Signal/BedGraph.c -o build/temp.linux-armv7l-cpython-311/MACS3/Signal/BedGraph.o -w -Ofast
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-311/MACS3/Signal/BedGraph.o -L/usr/lib/arm-linux-gnueabihf -lm -o build/lib.linux-armv7l-cpython-311/MACS3/Signal/BedGraph.cpython-311-arm-linux-gnueabihf.so
building 'MACS3.Signal.ScoreTrack' extension
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS3/Signal/ScoreTrack.c -o build/temp.linux-armv7l-cpython-311/MACS3/Signal/ScoreTrack.o -w -Ofast
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-311/MACS3/Signal/ScoreTrack.o -L/usr/lib/arm-linux-gnueabihf -lm -o build/lib.linux-armv7l-cpython-311/MACS3/Signal/ScoreTrack.cpython-311-arm-linux-gnueabihf.so
building 'MACS3.Signal.CallPeakUnit' extension
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS3/Signal/CallPeakUnit.c -o build/temp.linux-armv7l-cpython-311/MACS3/Signal/CallPeakUnit.o -w -Ofast
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-311/MACS3/Signal/CallPeakUnit.o -L/usr/lib/arm-linux-gnueabihf -lm -o build/lib.linux-armv7l-cpython-311/MACS3/Signal/CallPeakUnit.cpython-311-arm-linux-gnueabihf.so
building 'MACS3.Signal.VariantStat' extension
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS3/Signal/VariantStat.c -o build/temp.linux-armv7l-cpython-311/MACS3/Signal/VariantStat.o -w -Ofast
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-311/MACS3/Signal/VariantStat.o -L/usr/lib/arm-linux-gnueabihf -lm -o build/lib.linux-armv7l-cpython-311/MACS3/Signal/VariantStat.cpython-311-arm-linux-gnueabihf.so
building 'MACS3.Signal.ReadAlignment' extension
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS3/Signal/ReadAlignment.c -o build/temp.linux-armv7l-cpython-311/MACS3/Signal/ReadAlignment.o -w -Ofast
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-311/MACS3/Signal/ReadAlignment.o -L/usr/lib/arm-linux-gnueabihf -lm -o build/lib.linux-armv7l-cpython-311/MACS3/Signal/ReadAlignment.cpython-311-arm-linux-gnueabihf.so
building 'MACS3.Signal.RACollection' extension
creating build/temp.linux-armv7l-cpython-311/MACS3/fermi-lite
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.11 -c MACS3/Signal/RACollection.c -o build/temp.linux-armv7l-cpython-311/MACS3/Signal/RACollection.o -w -Ofast -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.11 -c MACS3/Signal/swalign.c -o build/temp.linux-armv7l-cpython-311/MACS3/Signal/swalign.o -w -Ofast -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.11 -c MACS3/fermi-lite/bfc.c -o build/temp.linux-armv7l-cpython-311/MACS3/fermi-lite/bfc.o -w -Ofast -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.11 -c MACS3/fermi-lite/bseq.c -o build/temp.linux-armv7l-cpython-311/MACS3/fermi-lite/bseq.o -w -Ofast -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.11 -c MACS3/fermi-lite/bubble.c -o build/temp.linux-armv7l-cpython-311/MACS3/fermi-lite/bubble.o -w -Ofast -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.11 -c MACS3/fermi-lite/htab.c -o build/temp.linux-armv7l-cpython-311/MACS3/fermi-lite/htab.o -w -Ofast -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.11 -c MACS3/fermi-lite/ksw.c -o build/temp.linux-armv7l-cpython-311/MACS3/fermi-lite/ksw.o -w -Ofast -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.11 -c MACS3/fermi-lite/kthread.c -o build/temp.linux-armv7l-cpython-311/MACS3/fermi-lite/kthread.o -w -Ofast -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.11 -c MACS3/fermi-lite/mag.c -o build/temp.linux-armv7l-cpython-311/MACS3/fermi-lite/mag.o -w -Ofast -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.11 -c MACS3/fermi-lite/misc.c -o build/temp.linux-armv7l-cpython-311/MACS3/fermi-lite/misc.o -w -Ofast -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.11 -c MACS3/fermi-lite/mrope.c -o build/temp.linux-armv7l-cpython-311/MACS3/fermi-lite/mrope.o -w -Ofast -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.11 -c MACS3/fermi-lite/rld0.c -o build/temp.linux-armv7l-cpython-311/MACS3/fermi-lite/rld0.o -w -Ofast -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.11 -c MACS3/fermi-lite/rle.c -o build/temp.linux-armv7l-cpython-311/MACS3/fermi-lite/rle.o -w -Ofast -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.11 -c MACS3/fermi-lite/rope.c -o build/temp.linux-armv7l-cpython-311/MACS3/fermi-lite/rope.o -w -Ofast -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.11 -c MACS3/fermi-lite/unitig.c -o build/temp.linux-armv7l-cpython-311/MACS3/fermi-lite/unitig.o -w -Ofast -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-311/MACS3/Signal/RACollection.o build/temp.linux-armv7l-cpython-311/MACS3/Signal/swalign.o build/temp.linux-armv7l-cpython-311/MACS3/fermi-lite/bfc.o build/temp.linux-armv7l-cpython-311/MACS3/fermi-lite/bseq.o build/temp.linux-armv7l-cpython-311/MACS3/fermi-lite/bubble.o build/temp.linux-armv7l-cpython-311/MACS3/fermi-lite/htab.o build/temp.linux-armv7l-cpython-311/MACS3/fermi-lite/ksw.o build/temp.linux-armv7l-cpython-311/MACS3/fermi-lite/kthread.o build/temp.linux-armv7l-cpython-311/MACS3/fermi-lite/mag.o build/temp.linux-armv7l-cpython-311/MACS3/fermi-lite/misc.o build/temp.linux-armv7l-cpython-311/MACS3/fermi-lite/mrope.o build/temp.linux-armv7l-cpython-311/MACS3/fermi-lite/rld0.o build/temp.linux-armv7l-cpython-311/MACS3/fermi-lite/rle.o build/temp.linux-armv7l-cpython-311/MACS3/fermi-lite/rope.o build/temp.linux-armv7l-cpython-311/MACS3/fermi-lite/unitig.o -L/usr/lib/arm-linux-gnueabihf -lm -lz -o build/lib.linux-armv7l-cpython-311/MACS3/Signal/RACollection.cpython-311-arm-linux-gnueabihf.so
building 'MACS3.Signal.UnitigRACollection' extension
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS3/Signal/UnitigRACollection.c -o build/temp.linux-armv7l-cpython-311/MACS3/Signal/UnitigRACollection.o -w -Ofast
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-311/MACS3/Signal/UnitigRACollection.o -L/usr/lib/arm-linux-gnueabihf -lm -o build/lib.linux-armv7l-cpython-311/MACS3/Signal/UnitigRACollection.cpython-311-arm-linux-gnueabihf.so
building 'MACS3.Signal.PosReadsInfo' extension
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS3/Signal/PosReadsInfo.c -o build/temp.linux-armv7l-cpython-311/MACS3/Signal/PosReadsInfo.o -w -Ofast
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-311/MACS3/Signal/PosReadsInfo.o -L/usr/lib/arm-linux-gnueabihf -lm -o build/lib.linux-armv7l-cpython-311/MACS3/Signal/PosReadsInfo.cpython-311-arm-linux-gnueabihf.so
building 'MACS3.Signal.PeakVariants' extension
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS3/Signal/PeakVariants.c -o build/temp.linux-armv7l-cpython-311/MACS3/Signal/PeakVariants.o -w -Ofast
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-311/MACS3/Signal/PeakVariants.o -L/usr/lib/arm-linux-gnueabihf -lm -o build/lib.linux-armv7l-cpython-311/MACS3/Signal/PeakVariants.cpython-311-arm-linux-gnueabihf.so
building 'MACS3.IO.Parser' extension
creating build/temp.linux-armv7l-cpython-311/MACS3/IO
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS3/IO/Parser.c -o build/temp.linux-armv7l-cpython-311/MACS3/IO/Parser.o -w -Ofast
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-311/MACS3/IO/Parser.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/MACS3/IO/Parser.cpython-311-arm-linux-gnueabihf.so
building 'MACS3.IO.PeakIO' extension
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c MACS3/IO/PeakIO.c -o build/temp.linux-armv7l-cpython-311/MACS3/IO/PeakIO.o -w -Ofast
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-311/MACS3/IO/PeakIO.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/MACS3/IO/PeakIO.cpython-311-arm-linux-gnueabihf.so
building 'MACS3.IO.BedGraphIO' extension
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c MACS3/IO/BedGraphIO.c -o build/temp.linux-armv7l-cpython-311/MACS3/IO/BedGraphIO.o -w -Ofast
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-311/MACS3/IO/BedGraphIO.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/MACS3/IO/BedGraphIO.cpython-311-arm-linux-gnueabihf.so
building 'MACS3.IO.BAM' extension
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS3/IO/BAM.c -o build/temp.linux-armv7l-cpython-311/MACS3/IO/BAM.o -w -Ofast
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-311/MACS3/IO/BAM.o -L/usr/lib/arm-linux-gnueabihf -lm -o build/lib.linux-armv7l-cpython-311/MACS3/IO/BAM.cpython-311-arm-linux-gnueabihf.so
running build_scripts
creating build/scripts-3.11
copying and adjusting bin/macs3 -> build/scripts-3.11
changing mode of build/scripts-3.11/macs3 from 644 to 755
installing to build/bdist.linux-armv7l/wheel
running install
running install_lib
creating build/bdist.linux-armv7l
creating build/bdist.linux-armv7l/wheel
creating build/bdist.linux-armv7l/wheel/MACS3
copying build/lib.linux-armv7l-cpython-311/MACS3/__init__.py -> build/bdist.linux-armv7l/wheel/MACS3
creating build/bdist.linux-armv7l/wheel/MACS3/IO
copying build/lib.linux-armv7l-cpython-311/MACS3/IO/OutputWriter.py -> build/bdist.linux-armv7l/wheel/MACS3/IO
copying build/lib.linux-armv7l-cpython-311/MACS3/IO/__init__.py -> build/bdist.linux-armv7l/wheel/MACS3/IO
copying build/lib.linux-armv7l-cpython-311/MACS3/IO/Parser.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MACS3/IO
copying build/lib.linux-armv7l-cpython-311/MACS3/IO/PeakIO.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MACS3/IO
copying build/lib.linux-armv7l-cpython-311/MACS3/IO/BedGraphIO.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MACS3/IO
copying build/lib.linux-armv7l-cpython-311/MACS3/IO/BAM.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MACS3/IO
creating build/bdist.linux-armv7l/wheel/MACS3/Signal
copying build/lib.linux-armv7l-cpython-311/MACS3/Signal/__init__.py -> build/bdist.linux-armv7l/wheel/MACS3/Signal
copying build/lib.linux-armv7l-cpython-311/MACS3/Signal/HMMR_EM.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MACS3/Signal
copying build/lib.linux-armv7l-cpython-311/MACS3/Signal/HMMR_Signal_Processing.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MACS3/Signal
copying build/lib.linux-armv7l-cpython-311/MACS3/Signal/HMMR_HMM.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MACS3/Signal
copying build/lib.linux-armv7l-cpython-311/MACS3/Signal/Prob.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MACS3/Signal
copying build/lib.linux-armv7l-cpython-311/MACS3/Signal/Region.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MACS3/Signal
copying build/lib.linux-armv7l-cpython-311/MACS3/Signal/Pileup.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MACS3/Signal
copying build/lib.linux-armv7l-cpython-311/MACS3/Signal/PileupV2.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MACS3/Signal
copying build/lib.linux-armv7l-cpython-311/MACS3/Signal/PeakModel.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MACS3/Signal
copying build/lib.linux-armv7l-cpython-311/MACS3/Signal/PeakDetect.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MACS3/Signal
copying build/lib.linux-armv7l-cpython-311/MACS3/Signal/SignalProcessing.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MACS3/Signal
copying build/lib.linux-armv7l-cpython-311/MACS3/Signal/FixWidthTrack.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MACS3/Signal
copying build/lib.linux-armv7l-cpython-311/MACS3/Signal/PairedEndTrack.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MACS3/Signal
copying build/lib.linux-armv7l-cpython-311/MACS3/Signal/BedGraph.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MACS3/Signal
copying build/lib.linux-armv7l-cpython-311/MACS3/Signal/ScoreTrack.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MACS3/Signal
copying build/lib.linux-armv7l-cpython-311/MACS3/Signal/CallPeakUnit.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MACS3/Signal
copying build/lib.linux-armv7l-cpython-311/MACS3/Signal/VariantStat.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MACS3/Signal
copying build/lib.linux-armv7l-cpython-311/MACS3/Signal/ReadAlignment.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MACS3/Signal
copying build/lib.linux-armv7l-cpython-311/MACS3/Signal/RACollection.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MACS3/Signal
copying build/lib.linux-armv7l-cpython-311/MACS3/Signal/UnitigRACollection.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MACS3/Signal
copying build/lib.linux-armv7l-cpython-311/MACS3/Signal/PosReadsInfo.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MACS3/Signal
copying build/lib.linux-armv7l-cpython-311/MACS3/Signal/PeakVariants.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MACS3/Signal
creating build/bdist.linux-armv7l/wheel/MACS3/Commands
copying build/lib.linux-armv7l-cpython-311/MACS3/Commands/__init__.py -> build/bdist.linux-armv7l/wheel/MACS3/Commands
copying build/lib.linux-armv7l-cpython-311/MACS3/Commands/bdgbroadcall_cmd.py -> build/bdist.linux-armv7l/wheel/MACS3/Commands
copying build/lib.linux-armv7l-cpython-311/MACS3/Commands/bdgcmp_cmd.py -> build/bdist.linux-armv7l/wheel/MACS3/Commands
copying build/lib.linux-armv7l-cpython-311/MACS3/Commands/bdgdiff_cmd.py -> build/bdist.linux-armv7l/wheel/MACS3/Commands
copying build/lib.linux-armv7l-cpython-311/MACS3/Commands/bdgopt_cmd.py -> build/bdist.linux-armv7l/wheel/MACS3/Commands
copying build/lib.linux-armv7l-cpython-311/MACS3/Commands/bdgpeakcall_cmd.py -> build/bdist.linux-armv7l/wheel/MACS3/Commands
copying build/lib.linux-armv7l-cpython-311/MACS3/Commands/callpeak_cmd.py -> build/bdist.linux-armv7l/wheel/MACS3/Commands
copying build/lib.linux-armv7l-cpython-311/MACS3/Commands/callvar_cmd.py -> build/bdist.linux-armv7l/wheel/MACS3/Commands
copying build/lib.linux-armv7l-cpython-311/MACS3/Commands/cmbreps_cmd.py -> build/bdist.linux-armv7l/wheel/MACS3/Commands
copying build/lib.linux-armv7l-cpython-311/MACS3/Commands/diffpeak_cmd.py -> build/bdist.linux-armv7l/wheel/MACS3/Commands
copying build/lib.linux-armv7l-cpython-311/MACS3/Commands/filterdup_cmd.py -> build/bdist.linux-armv7l/wheel/MACS3/Commands
copying build/lib.linux-armv7l-cpython-311/MACS3/Commands/hmmratac_cmd.py -> build/bdist.linux-armv7l/wheel/MACS3/Commands
copying build/lib.linux-armv7l-cpython-311/MACS3/Commands/pileup_cmd.py -> build/bdist.linux-armv7l/wheel/MACS3/Commands
copying build/lib.linux-armv7l-cpython-311/MACS3/Commands/predictd_cmd.py -> build/bdist.linux-armv7l/wheel/MACS3/Commands
copying build/lib.linux-armv7l-cpython-311/MACS3/Commands/randsample_cmd.py -> build/bdist.linux-armv7l/wheel/MACS3/Commands
copying build/lib.linux-armv7l-cpython-311/MACS3/Commands/refinepeak_cmd.py -> build/bdist.linux-armv7l/wheel/MACS3/Commands
creating build/bdist.linux-armv7l/wheel/MACS3/Utilities
copying build/lib.linux-armv7l-cpython-311/MACS3/Utilities/Constants.py -> build/bdist.linux-armv7l/wheel/MACS3/Utilities
copying build/lib.linux-armv7l-cpython-311/MACS3/Utilities/Logger.py -> build/bdist.linux-armv7l/wheel/MACS3/Utilities
copying build/lib.linux-armv7l-cpython-311/MACS3/Utilities/OptValidator.py -> build/bdist.linux-armv7l/wheel/MACS3/Utilities
copying build/lib.linux-armv7l-cpython-311/MACS3/Utilities/__init__.py -> build/bdist.linux-armv7l/wheel/MACS3/Utilities
running install_egg_info
running egg_info
creating MACS3.egg-info
writing MACS3.egg-info/PKG-INFO
writing dependency_links to MACS3.egg-info/dependency_links.txt
writing requirements to MACS3.egg-info/requires.txt
writing top-level names to MACS3.egg-info/top_level.txt
writing manifest file 'MACS3.egg-info/SOURCES.txt'
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
reading manifest file 'MACS3.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'make_docker_base.sh'
warning: no previously-included files matching '.ipynb_checkpoints/*' found anywhere in distribution
adding license file 'LICENSE'
writing manifest file 'MACS3.egg-info/SOURCES.txt'
Copying MACS3.egg-info to build/bdist.linux-armv7l/wheel/MACS3-3.0.1.egg-info
running install_scripts
creating build/bdist.linux-armv7l/wheel/MACS3-3.0.1.data
creating build/bdist.linux-armv7l/wheel/MACS3-3.0.1.data/scripts
copying build/scripts-3.11/macs3 -> build/bdist.linux-armv7l/wheel/MACS3-3.0.1.data/scripts
changing mode of build/bdist.linux-armv7l/wheel/MACS3-3.0.1.data/scripts/macs3 to 755
creating build/bdist.linux-armv7l/wheel/MACS3-3.0.1.dist-info/WHEEL
creating '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS3/.tmp-gn2dtfeu/MACS3-3.0.1-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
adding 'MACS3/__init__.py'
adding 'MACS3/Commands/__init__.py'
adding 'MACS3/Commands/bdgbroadcall_cmd.py'
adding 'MACS3/Commands/bdgcmp_cmd.py'
adding 'MACS3/Commands/bdgdiff_cmd.py'
adding 'MACS3/Commands/bdgopt_cmd.py'
adding 'MACS3/Commands/bdgpeakcall_cmd.py'
adding 'MACS3/Commands/callpeak_cmd.py'
adding 'MACS3/Commands/callvar_cmd.py'
adding 'MACS3/Commands/cmbreps_cmd.py'
adding 'MACS3/Commands/diffpeak_cmd.py'
adding 'MACS3/Commands/filterdup_cmd.py'
adding 'MACS3/Commands/hmmratac_cmd.py'
adding 'MACS3/Commands/pileup_cmd.py'
adding 'MACS3/Commands/predictd_cmd.py'
adding 'MACS3/Commands/randsample_cmd.py'
adding 'MACS3/Commands/refinepeak_cmd.py'
adding 'MACS3/IO/BAM.cpython-311-arm-linux-gnueabihf.so'
adding 'MACS3/IO/BedGraphIO.cpython-311-arm-linux-gnueabihf.so'
adding 'MACS3/IO/OutputWriter.py'
adding 'MACS3/IO/Parser.cpython-311-arm-linux-gnueabihf.so'
adding 'MACS3/IO/PeakIO.cpython-311-arm-linux-gnueabihf.so'
adding 'MACS3/IO/__init__.py'
adding 'MACS3/Signal/BedGraph.cpython-311-arm-linux-gnueabihf.so'
adding 'MACS3/Signal/CallPeakUnit.cpython-311-arm-linux-gnueabihf.so'
adding 'MACS3/Signal/FixWidthTrack.cpython-311-arm-linux-gnueabihf.so'
adding 'MACS3/Signal/HMMR_EM.cpython-311-arm-linux-gnueabihf.so'
adding 'MACS3/Signal/HMMR_HMM.cpython-311-arm-linux-gnueabihf.so'
adding 'MACS3/Signal/HMMR_Signal_Processing.cpython-311-arm-linux-gnueabihf.so'
adding 'MACS3/Signal/PairedEndTrack.cpython-311-arm-linux-gnueabihf.so'
adding 'MACS3/Signal/PeakDetect.cpython-311-arm-linux-gnueabihf.so'
adding 'MACS3/Signal/PeakModel.cpython-311-arm-linux-gnueabihf.so'
adding 'MACS3/Signal/PeakVariants.cpython-311-arm-linux-gnueabihf.so'
adding 'MACS3/Signal/Pileup.cpython-311-arm-linux-gnueabihf.so'
adding 'MACS3/Signal/PileupV2.cpython-311-arm-linux-gnueabihf.so'
adding 'MACS3/Signal/PosReadsInfo.cpython-311-arm-linux-gnueabihf.so'
adding 'MACS3/Signal/Prob.cpython-311-arm-linux-gnueabihf.so'
adding 'MACS3/Signal/RACollection.cpython-311-arm-linux-gnueabihf.so'
adding 'MACS3/Signal/ReadAlignment.cpython-311-arm-linux-gnueabihf.so'
adding 'MACS3/Signal/Region.cpython-311-arm-linux-gnueabihf.so'
adding 'MACS3/Signal/ScoreTrack.cpython-311-arm-linux-gnueabihf.so'
adding 'MACS3/Signal/SignalProcessing.cpython-311-arm-linux-gnueabihf.so'
adding 'MACS3/Signal/UnitigRACollection.cpython-311-arm-linux-gnueabihf.so'
adding 'MACS3/Signal/VariantStat.cpython-311-arm-linux-gnueabihf.so'
adding 'MACS3/Signal/__init__.py'
adding 'MACS3/Utilities/Constants.py'
adding 'MACS3/Utilities/Logger.py'
adding 'MACS3/Utilities/OptValidator.py'
adding 'MACS3/Utilities/__init__.py'
adding 'MACS3-3.0.1.data/scripts/macs3'
adding 'MACS3-3.0.1.dist-info/LICENSE'
adding 'MACS3-3.0.1.dist-info/METADATA'
adding 'MACS3-3.0.1.dist-info/WHEEL'
adding 'MACS3-3.0.1.dist-info/top_level.txt'
adding 'MACS3-3.0.1.dist-info/RECORD'
removing build/bdist.linux-armv7l/wheel
Successfully built MACS3-3.0.1-cp311-cp311-linux_armv7l.whl
I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.11 with "installer" module
dh_auto_build: error: pybuild --build -i python{version} -p "3.12 3.11" returned exit code 13
make[1]: *** [debian/rules:18: override_dh_auto_build] Error 25
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:14: binary-arch] Error 2
dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2
--------------------------------------------------------------------------------
Build finished at 2024-02-26T06:16:28Z
Finished
--------
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
E: Build failure (dpkg-buildpackage died)
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 0
Build-Time: 3936
Distribution: trixie-staging
Fail-Stage: build
Host Architecture: armhf
Install-Time: 1921
Job: macs_3.0.1-1
Machine Architecture: armhf
Package: macs
Package-Time: 5970
Source-Version: 3.0.1-1
Space: 0
Status: failed
Version: 3.0.1-1
--------------------------------------------------------------------------------
Finished at 2024-02-26T06:16:28Z
Build needed 00:00:00, 0k disc space