macs →
2.2.9.1-1 →
armhf → 2023-09-17 06:19:34
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02
+==============================================================================+
| macs 2.2.9.1-1 (armhf) Sun, 17 Sep 2023 05:42:19 +0000 |
+==============================================================================+
Package: macs
Version: 2.2.9.1-1
Source Version: 2.2.9.1-1
Distribution: trixie-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/trixie-staging-armhf-sbuild-a806e077-3cc4-445a-9d9a-03cdaf50d462' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private trixie-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private trixie-staging/main Sources [14.1 MB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf Packages [14.6 MB]
Fetched 28.7 MB in 13s (2269 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http://172.17.4.1/private/dists/trixie-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'macs' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/macs.git
Please use:
git clone https://salsa.debian.org/med-team/macs.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 134 MB of source archives.
Get:1 http://172.17.4.1/private trixie-staging/main macs 2.2.9.1-1 (dsc) [2087 B]
Get:2 http://172.17.4.1/private trixie-staging/main macs 2.2.9.1-1 (tar) [133 MB]
Get:3 http://172.17.4.1/private trixie-staging/main macs 2.2.9.1-1 (diff) [1268 kB]
Fetched 134 MB in 20s (6693 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/macs-b4BPUL/macs-2.2.9.1' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/macs-b4BPUL' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-8cystN/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-8cystN/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-8cystN/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-8cystN/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-8cystN/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-8cystN/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-8cystN/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-8cystN/apt_archive ./ Packages [434 B]
Fetched 2110 B in 1s (2898 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap netbase sensible-utils sgml-base
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 29 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-8cystN/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (59.1 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 11771 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all-dev, python3-numpy, python3-setuptools, python3-pip, python3-pytest, cython3, help2man, procps
Filtered Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all-dev, python3-numpy, python3-setuptools, python3-pip, python3-pytest, cython3, help2man, procps
dpkg-deb: building package 'sbuild-build-depends-macs-dummy' in '/<<BUILDDIR>>/resolver-8cystN/apt_archive/sbuild-build-depends-macs-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-macs-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-8cystN/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-8cystN/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-8cystN/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-8cystN/apt_archive ./ Sources [551 B]
Get:5 copy:/<<BUILDDIR>>/resolver-8cystN/apt_archive ./ Packages [634 B]
Fetched 2518 B in 1s (4018 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install macs build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap netbase sgml-base
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
cython3 debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file
gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl
libblas3 libdebhelper-perl libelf1 libexpat1 libexpat1-dev
libfile-stripnondeterminism-perl libgfortran5 libicu72 libjs-jquery
libjs-sphinxdoc libjs-underscore liblapack3 liblocale-gettext-perl
libmagic-mgc libmagic1 libpipeline1 libproc2-0 libpython3-all-dev
libpython3-dev libpython3-stdlib libpython3.11 libpython3.11-dev
libpython3.11-minimal libpython3.11-stdlib libsub-override-perl libtool
libuchardet0 libxml2 m4 man-db media-types openssl po-debconf procps python3
python3-all python3-all-dev python3-dev python3-distutils python3-iniconfig
python3-lib2to3 python3-minimal python3-numpy python3-packaging python3-pip
python3-pkg-resources python3-pluggy python3-pytest python3-setuptools
python3-wheel python3.11 python3.11-dev python3.11-minimal zlib1g zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc cython-doc dh-make flit
python3-build python3-installer gettext-doc libasprintf-dev libgettextpo-dev
groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less
www-browser libmail-box-perl python3-doc python3-tk python3-venv gfortran
python-setuptools-doc python3.11-venv python3.11-doc binfmt-support
Recommended packages:
curl | wget | lynx libarchive-cpio-perl javascript-common libltdl-dev
libmail-sendmail-perl psmisc python3-pygments
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
cython3 debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file
gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl
libblas3 libdebhelper-perl libelf1 libexpat1 libexpat1-dev
libfile-stripnondeterminism-perl libgfortran5 libicu72 libjs-jquery
libjs-sphinxdoc libjs-underscore liblapack3 liblocale-gettext-perl
libmagic-mgc libmagic1 libpipeline1 libproc2-0 libpython3-all-dev
libpython3-dev libpython3-stdlib libpython3.11 libpython3.11-dev
libpython3.11-minimal libpython3.11-stdlib libsub-override-perl libtool
libuchardet0 libxml2 m4 man-db media-types openssl po-debconf procps python3
python3-all python3-all-dev python3-dev python3-distutils python3-iniconfig
python3-lib2to3 python3-minimal python3-numpy python3-packaging python3-pip
python3-pkg-resources python3-pluggy python3-pytest python3-setuptools
python3-wheel python3.11 python3.11-dev python3.11-minimal
sbuild-build-depends-macs-dummy zlib1g-dev
The following packages will be upgraded:
zlib1g
1 upgraded, 74 newly installed, 0 to remove and 28 not upgraded.
Need to get 42.3 MB of archives.
After this operation, 173 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-8cystN/apt_archive ./ sbuild-build-depends-macs-dummy 0.invalid.0 [916 B]
Get:2 http://172.17.4.1/private trixie-staging/main armhf liblocale-gettext-perl armhf 1.07-5 [14.9 kB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf libpython3.11-minimal armhf 3.11.5-3 [800 kB]
Get:4 http://172.17.4.1/private trixie-staging/main armhf libexpat1 armhf 2.5.0-1 [77.2 kB]
Get:5 http://172.17.4.1/private trixie-staging/main armhf zlib1g armhf 1:1.2.13.dfsg-3 [73.6 kB]
Get:6 http://172.17.4.1/private trixie-staging/main armhf python3.11-minimal armhf 3.11.5-3 [1676 kB]
Get:7 http://172.17.4.1/private trixie-staging/main armhf python3-minimal armhf 3.11.2-1 [26.0 kB]
Get:8 http://172.17.4.1/private trixie-staging/main armhf media-types all 10.1.0 [26.9 kB]
Get:9 http://172.17.4.1/private trixie-staging/main armhf libpython3.11-stdlib armhf 3.11.5-3 [1675 kB]
Get:10 http://172.17.4.1/private trixie-staging/main armhf python3.11 armhf 3.11.5-3 [582 kB]
Get:11 http://172.17.4.1/private trixie-staging/main armhf libpython3-stdlib armhf 3.11.2-1 [9012 B]
Get:12 http://172.17.4.1/private trixie-staging/main armhf python3 armhf 3.11.2-1 [26.0 kB]
Get:13 http://172.17.4.1/private trixie-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:14 http://172.17.4.1/private trixie-staging/main armhf groff-base armhf 1.22.4-10 [774 kB]
Get:15 http://172.17.4.1/private trixie-staging/main armhf bsdextrautils armhf 2.38.1-5 [78.5 kB]
Get:16 http://172.17.4.1/private trixie-staging/main armhf libpipeline1 armhf 1.5.7-1 [33.4 kB]
Get:17 http://172.17.4.1/private trixie-staging/main armhf man-db armhf 2.11.2-2 [1342 kB]
Get:18 http://172.17.4.1/private trixie-staging/main armhf libproc2-0 armhf 2:4.0.2-3 [53.6 kB]
Get:19 http://172.17.4.1/private trixie-staging/main armhf procps armhf 2:4.0.2-3 [679 kB]
Get:20 http://172.17.4.1/private trixie-staging/main armhf openssl armhf 3.0.9-1 [1365 kB]
Get:21 http://172.17.4.1/private trixie-staging/main armhf ca-certificates all 20230311 [153 kB]
Get:22 http://172.17.4.1/private trixie-staging/main armhf libmagic-mgc armhf 1:5.44-3 [305 kB]
Get:23 http://172.17.4.1/private trixie-staging/main armhf libmagic1 armhf 1:5.44-3 [95.3 kB]
Get:24 http://172.17.4.1/private trixie-staging/main armhf file armhf 1:5.44-3 [41.5 kB]
Get:25 http://172.17.4.1/private trixie-staging/main armhf gettext-base armhf 0.21-12 [156 kB]
Get:26 http://172.17.4.1/private trixie-staging/main armhf m4 armhf 1.4.19-3 [256 kB]
Get:27 http://172.17.4.1/private trixie-staging/main armhf autoconf all 2.71-3 [332 kB]
Get:28 http://172.17.4.1/private trixie-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:29 http://172.17.4.1/private trixie-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:30 http://172.17.4.1/private trixie-staging/main armhf autopoint all 0.21-13 [496 kB]
Get:31 http://172.17.4.1/private trixie-staging/main armhf cython3 armhf 0.29.36-1 [1212 kB]
Get:32 http://172.17.4.1/private trixie-staging/main armhf libdebhelper-perl all 13.11.6 [81.9 kB]
Get:33 http://172.17.4.1/private trixie-staging/main armhf libtool all 2.4.7-7 [517 kB]
Get:34 http://172.17.4.1/private trixie-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:35 http://172.17.4.1/private trixie-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:36 http://172.17.4.1/private trixie-staging/main armhf libsub-override-perl all 0.09-4 [9304 B]
Get:37 http://172.17.4.1/private trixie-staging/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get:38 http://172.17.4.1/private trixie-staging/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get:39 http://172.17.4.1/private trixie-staging/main armhf libelf1 armhf 0.188-2.1+rpi1 [171 kB]
Get:40 http://172.17.4.1/private trixie-staging/main armhf dwz armhf 0.15-1 [92.4 kB]
Get:41 http://172.17.4.1/private trixie-staging/main armhf libicu72 armhf 72.1-3 [9009 kB]
Get:42 http://172.17.4.1/private trixie-staging/main armhf libxml2 armhf 2.9.14+dfsg-1.3 [571 kB]
Get:43 http://172.17.4.1/private trixie-staging/main armhf gettext armhf 0.21-12 [1201 kB]
Get:44 http://172.17.4.1/private trixie-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:45 http://172.17.4.1/private trixie-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:46 http://172.17.4.1/private trixie-staging/main armhf debhelper all 13.11.6 [952 kB]
Get:47 http://172.17.4.1/private trixie-staging/main armhf python3-lib2to3 all 3.11.5-1 [77.5 kB]
Get:48 http://172.17.4.1/private trixie-staging/main armhf python3-distutils all 3.11.5-1 [131 kB]
Get:49 http://172.17.4.1/private trixie-staging/main armhf dh-python all 6.20230825 [106 kB]
Get:50 http://172.17.4.1/private trixie-staging/main armhf help2man armhf 1.49.3 [198 kB]
Get:51 http://172.17.4.1/private trixie-staging/main armhf libblas3 armhf 3.11.0-2 [100.0 kB]
Get:52 http://172.17.4.1/private trixie-staging/main armhf libexpat1-dev armhf 2.5.0-1 [130 kB]
Get:53 http://172.17.4.1/private trixie-staging/main armhf libgfortran5 armhf 12.2.0-14+rpi1 [238 kB]
Get:54 http://172.17.4.1/private trixie-staging/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get:55 http://172.17.4.1/private trixie-staging/main armhf libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB]
Get:56 http://172.17.4.1/private trixie-staging/main armhf libjs-sphinxdoc all 5.3.0-7 [131 kB]
Get:57 http://172.17.4.1/private trixie-staging/main armhf liblapack3 armhf 3.11.0-2 [1624 kB]
Get:58 http://172.17.4.1/private trixie-staging/main armhf libpython3.11 armhf 3.11.5-3 [1660 kB]
Get:59 http://172.17.4.1/private trixie-staging/main armhf zlib1g-dev armhf 1:1.2.13.dfsg-3 [901 kB]
Get:60 http://172.17.4.1/private trixie-staging/main armhf libpython3.11-dev armhf 3.11.5-3 [3370 kB]
Get:61 http://172.17.4.1/private trixie-staging/main armhf libpython3-dev armhf 3.11.2-1 [9248 B]
Get:62 http://172.17.4.1/private trixie-staging/main armhf libpython3-all-dev armhf 3.11.2-1 [1064 B]
Get:63 http://172.17.4.1/private trixie-staging/main armhf python3-all armhf 3.11.2-1 [1060 B]
Get:64 http://172.17.4.1/private trixie-staging/main armhf python3.11-dev armhf 3.11.5-3 [623 kB]
Get:65 http://172.17.4.1/private trixie-staging/main armhf python3-dev armhf 3.11.2-1 [26.2 kB]
Get:66 http://172.17.4.1/private trixie-staging/main armhf python3-all-dev armhf 3.11.2-1 [1068 B]
Get:67 http://172.17.4.1/private trixie-staging/main armhf python3-iniconfig all 1.1.1-2 [6396 B]
Get:68 http://172.17.4.1/private trixie-staging/main armhf python3-pkg-resources all 68.1.2-1 [241 kB]
Get:69 http://172.17.4.1/private trixie-staging/main armhf python3-numpy armhf 1:1.24.2-1 [3826 kB]
Get:70 http://172.17.4.1/private trixie-staging/main armhf python3-packaging all 23.1-1 [37.4 kB]
Get:71 http://172.17.4.1/private trixie-staging/main armhf python3-setuptools all 68.1.2-1 [468 kB]
Get:72 http://172.17.4.1/private trixie-staging/main armhf python3-wheel all 0.41.0-2 [53.3 kB]
Get:73 http://172.17.4.1/private trixie-staging/main armhf python3-pip all 23.2+dfsg-1 [1353 kB]
Get:74 http://172.17.4.1/private trixie-staging/main armhf python3-pluggy all 1.3.0-1 [25.1 kB]
Get:75 http://172.17.4.1/private trixie-staging/main armhf python3-pytest all 7.4.2-1 [238 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Unpacking zlib1g:armhf (1:1.2.13.dfsg-3) over (1:1.2.13.dfsg-1) ...
Setting up zlib1g:armhf (1:1.2.13.dfsg-3) ...
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Setting up python3-all (3.11.2-1) ...
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Setting up python3-dev (3.11.2-1) ...
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Setting up debhelper (13.11.6) ...
Setting up sbuild-build-depends-macs-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.36-9+rpi1+deb12u1) ...
Processing triggers for ca-certificates (20230311) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-187-generic armhf (armv8l)
Toolchain package versions: binutils_2.40-2+rpi2 dpkg-dev_1.21.22+rpi1 g++-12_12.2.0-14+rpi1 gcc-12_12.2.0-14+rpi1 libc6-dev_2.36-9+rpi1+deb12u1 libstdc++-12-dev_12.2.0-14+rpi1 libstdc++6_12.2.0-14+rpi1 linux-libc-dev_6.1.38-1+rpi1
Package versions: adduser_3.137 apt_2.6.1 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-13 autotools-dev_20220109.1 base-files_12.4+rpi1+deb12u1 base-passwd_3.6.1 bash_5.2.15-2 binutils_2.40-2+rpi2 binutils-arm-linux-gnueabihf_2.40-2+rpi2 binutils-common_2.40-2+rpi2 bsdextrautils_2.38.1-5 bsdutils_1:2.38.1-5 build-essential_12.9 bzip2_1.0.8-5+b2 ca-certificates_20230311 coreutils_9.1-1 cpp_4:12.2.0-3+rpi1 cpp-12_12.2.0-14+rpi1 cython3_0.29.36-1 dash_0.5.12-2 debconf_1.5.82 debhelper_13.11.6 debianutils_5.7-0.4 dh-autoreconf_20 dh-python_6.20230825 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.8-4 dirmngr_2.2.40-1.1 dpkg_1.21.22+rpi1 dpkg-dev_1.21.22+rpi1 dwz_0.15-1 e2fsprogs_1.47.0-2 fakeroot_1.31-1.2 file_1:5.44-3 findutils_4.9.0-4 g++_4:12.2.0-3+rpi1 g++-12_12.2.0-14+rpi1 gcc_4:12.2.0-3+rpi1 gcc-12_12.2.0-14+rpi1 gcc-12-base_12.2.0-14+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-12 gettext-base_0.21-12 gnupg_2.2.40-1.1 gnupg-l10n_2.2.40-1.1 gnupg-utils_2.2.40-1.1 gpg_2.2.40-1.1 gpg-agent_2.2.40-1.1 gpg-wks-client_2.2.40-1.1 gpg-wks-server_2.2.40-1.1 gpgconf_2.2.40-1.1 gpgsm_2.2.40-1.1 gpgv_2.2.40-1.1 grep_3.8-5 groff-base_1.22.4-10 gzip_1.12-1 help2man_1.49.3 hostname_3.23+nmu1 init-system-helpers_1.65.2 intltool-debian_0.35.0+20060710.6 iputils-ping_3:20221126-1 krb5-locales_1.20.1-3 libacl1_2.3.1-3 libapt-pkg6.0_2.6.1 libarchive-zip-perl_1.68-1 libasan8_12.2.0-14+rpi1 libassuan0_2.5.5-5 libatomic1_12.2.0-14+rpi1 libattr1_1:2.5.1-4 libaudit-common_1:3.1.1-1 libaudit1_1:3.0.9-1 libbinutils_2.40-2+rpi2 libblas3_3.11.0-2 libblkid1_2.38.1-5 libbz2-1.0_1.0.8-5+b2 libc-bin_2.36-9+rpi1+deb12u1 libc-dev-bin_2.36-9+rpi1+deb12u1 libc6_2.36-9+rpi1+deb12u1 libc6-dev_2.36-9+rpi1+deb12u1 libcap-ng0_0.8.3-1+b1 libcap2_1:2.66-4 libcap2-bin_1:2.66-4 libcc1-0_12.2.0-14+rpi1 libcom-err2_1.47.0-2 libcrypt-dev_1:4.4.33-2 libcrypt1_1:4.4.33-2 libctf-nobfd0_2.40-2+rpi2 libctf0_2.40-2+rpi2 libdb5.3_5.3.28+dfsg2-1 libdebconfclient0_0.270 libdebhelper-perl_13.11.6 libdpkg-perl_1.21.22+rpi1 libelf1_0.188-2.1+rpi1 libexpat1_2.5.0-1 libexpat1-dev_2.5.0-1 libext2fs2_1.47.0-2 libfakeroot_1.31-1.2 libffi8_3.4.4-1 libfile-find-rule-perl_0.34-3 libfile-stripnondeterminism-perl_1.13.1-1 libgcc-12-dev_12.2.0-14+rpi1 libgcc-s1_12.2.0-14+rpi1 libgcrypt20_1.10.1-3 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgfortran5_12.2.0-14+rpi1 libgmp10_2:6.2.1+dfsg1-1.1 libgnutls30_3.7.9-2 libgomp1_12.2.0-14+rpi1 libgpg-error0_1.46-1 libgssapi-krb5-2_1.20.1-2 libhogweed6_3.8.1-2 libicu72_72.1-3 libidn2-0_2.3.3-1+b2 libisl23_0.25-1 libjansson4_2.14-2 libjs-jquery_3.6.1+dfsg+~3.5.14-1 libjs-sphinxdoc_5.3.0-7 libjs-underscore_1.13.4~dfsg+~1.11.4-3 libk5crypto3_1.20.1-2 libkeyutils1_1.6.3-2 libkrb5-3_1.20.1-2 libkrb5support0_1.20.1-2 libksba8_1.6.3-2 liblapack3_3.11.0-2 libldap-2.5-0_2.5.13+dfsg-5+rpi1 liblocale-gettext-perl_1.07-5 liblz4-1_1.9.4-1+rpi1+b1 liblzma5_5.4.1-0.2 libmagic-mgc_1:5.44-3 libmagic1_1:5.44-3 libmd0_1.0.4-2 libmount1_2.38.1-5 libmpc3_1.3.1-1 libmpfr6_4.2.0-1 libncursesw6_6.4-4 libnettle8_3.8.1-2 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libnumber-compare-perl_0.03-3 libp11-kit0_0.24.1-2 libpam-cap_1:2.66-4 libpam-modules_1.5.2-6 libpam-modules-bin_1.5.2-6 libpam-runtime_1.5.2-7 libpam0g_1.5.2-6 libpcre2-8-0_10.42-1 libpcre3_2:8.39-15 libperl5.36_5.36.0-7 libpipeline1_1.5.7-1 libproc2-0_2:4.0.2-3 libpython3-all-dev_3.11.2-1 libpython3-dev_3.11.2-1 libpython3-stdlib_3.11.2-1 libpython3.11_3.11.5-3 libpython3.11-dev_3.11.5-3 libpython3.11-minimal_3.11.5-3 libpython3.11-stdlib_3.11.5-3 libreadline8_8.2-1.3 libsasl2-2_2.1.28+dfsg-10 libsasl2-modules-db_2.1.28+dfsg-10 libseccomp2_2.5.4-1+rpi1+b1 libselinux1_3.4-1+b2 libsemanage-common_3.5-1 libsemanage2_3.4-1+b2 libsepol1_3.1-1 libsepol2_3.4-2.1 libsmartcols1_2.38.1-5 libsqlite3-0_3.40.1-2 libss2_1.47.0-2 libssl1.1_1.1.1o-1 libssl3_3.0.9-1 libstdc++-12-dev_12.2.0-14+rpi1 libstdc++6_12.2.0-14+rpi1 libsub-override-perl_0.09-4 libsystemd0_252.12-1~deb12u1+rpi1 libtasn1-6_4.19.0-2 libtext-glob-perl_0.11-3 libtinfo6_6.4-4 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-7 libubsan1_12.2.0-14+rpi1 libuchardet0_0.0.7-1 libudev1_252.12-1~deb12u1+rpi1 libunistring2_1.0-2 libuuid1_2.38.1-5 libxml2_2.9.14+dfsg-1.3 libxxhash0_0.8.1-1 libzstd1_1.5.4+dfsg2-5 linux-libc-dev_6.1.38-1+rpi1 login_1:4.13+dfsg1-1 logsave_1.47.0-2 lsb-base_11.6+rpi1 m4_1.4.19-3 make_4.3-4.1 man-db_2.11.2-2 mawk_1.3.4.20200120-3.1 media-types_10.1.0 mount_2.38.1-5 nano_7.2-1 ncurses-base_6.4+20230625-2 ncurses-bin_6.4-4 netbase_6.4 openssl_3.0.9-1 passwd_1:4.13+dfsg1-1 patch_2.7.6-7 perl_5.36.0-7 perl-base_5.36.0-7 perl-modules-5.36_5.36.0-7 pinentry-curses_1.2.1-1 po-debconf_1.0.21+nmu1 procps_2:4.0.2-3 python3_3.11.2-1 python3-all_3.11.2-1 python3-all-dev_3.11.2-1 python3-dev_3.11.2-1 python3-distutils_3.11.5-1 python3-iniconfig_1.1.1-2 python3-lib2to3_3.11.5-1 python3-minimal_3.11.2-1 python3-numpy_1:1.24.2-1 python3-packaging_23.1-1 python3-pip_23.2+dfsg-1 python3-pkg-resources_68.1.2-1 python3-pluggy_1.3.0-1 python3-pytest_7.4.2-1 python3-setuptools_68.1.2-1 python3-wheel_0.41.0-2 python3.11_3.11.5-3 python3.11-dev_3.11.5-3 python3.11-minimal_3.11.5-3 raspbian-archive-keyring_20120528.2 readline-common_8.2-1.3 rpcsvc-proto_1.4.3-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-macs-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.20 sgml-base_1.31 sysvinit-utils_3.06-4 tar_1.34+dfsg-1.2 tzdata_2023c-10 usrmerge_37 util-linux_2.38.1-5 util-linux-extra_2.38.1-5 xz-utils_5.4.1-0.2 zlib1g_1:1.2.13.dfsg-3 zlib1g-dev_1:1.2.13.dfsg-3
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: Signature made Wed Aug 9 10:20:20 2023 UTC
gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./macs_2.2.9.1-1.dsc: no acceptable signature found
dpkg-source: info: extracting macs in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking macs_2.2.9.1.orig.tar.gz
dpkg-source: info: unpacking macs_2.2.9.1-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying spelling
dpkg-source: info: applying keep_debug
dpkg-source: info: applying link-libm.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=trixie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=trixie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=trixie-staging-armhf-sbuild-a806e077-3cc4-445a-9d9a-03cdaf50d462
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package macs
dpkg-buildpackage: info: source version 2.2.9.1-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
dpkg-source: info: using options from macs-2.2.9.1/debian/source/options: --extend-diff-ignore=(^|/)(.*\.c)$|.*[.]egg-info/
debian/rules clean
dh clean --buildsystem=pybuild
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
rm -Rf test/macs2.2.9.1-1* test/speedtest*
rm -f debian/*.1 debian/*-man-include
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary-arch
dh binary-arch --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:291: python3.11 setup.py config
Compiling MACS2/Prob.pyx because it changed.
Compiling MACS2/IO/Parser.pyx because it changed.
Compiling MACS2/Pileup.pyx because it changed.
Compiling MACS2/PeakModel.pyx because it changed.
Compiling MACS2/PeakDetect.pyx because it changed.
Compiling MACS2/Signal.pyx because it changed.
Compiling MACS2/IO/PeakIO.pyx because it changed.
Compiling MACS2/IO/BedGraphIO.pyx because it changed.
Compiling MACS2/IO/FixWidthTrack.pyx because it changed.
Compiling MACS2/IO/PairedEndTrack.pyx because it changed.
Compiling MACS2/IO/BedGraph.pyx because it changed.
Compiling MACS2/IO/ScoreTrack.pyx because it changed.
Compiling MACS2/IO/CallPeakUnit.pyx because it changed.
[ 1/13] Cythonizing MACS2/IO/BedGraph.pyx
[ 2/13] Cythonizing MACS2/IO/BedGraphIO.pyx
[ 3/13] Cythonizing MACS2/IO/CallPeakUnit.pyx
[ 4/13] Cythonizing MACS2/IO/FixWidthTrack.pyx
[ 5/13] Cythonizing MACS2/IO/PairedEndTrack.pyx
[ 6/13] Cythonizing MACS2/IO/Parser.pyx
[ 7/13] Cythonizing MACS2/IO/PeakIO.pyx
[ 8/13] Cythonizing MACS2/IO/ScoreTrack.pyx
[ 9/13] Cythonizing MACS2/PeakDetect.pyx
[10/13] Cythonizing MACS2/PeakModel.pyx
[11/13] Cythonizing MACS2/Pileup.pyx
[12/13] Cythonizing MACS2/Prob.pyx
[13/13] Cythonizing MACS2/Signal.pyx
/usr/lib/python3/dist-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
!!
********************************************************************************
Requirements should be satisfied by a PEP 517 installer.
If you are using pip, you can try `pip install --use-pep517`.
********************************************************************************
!!
dist.fetch_build_eggs(dist.setup_requires)
running config
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
for pyx in $(find MACS2/ -name "*.pyx"); do \
rm -f ${pyx%%.pyx}.{h,c}; touch ${pyx}; done
dh_auto_build
I: pybuild base:291: /usr/bin/python3 setup.py build
Compiling MACS2/Prob.pyx because it changed.
Compiling MACS2/IO/Parser.pyx because it changed.
Compiling MACS2/Pileup.pyx because it changed.
Compiling MACS2/PeakModel.pyx because it changed.
Compiling MACS2/PeakDetect.pyx because it changed.
Compiling MACS2/Signal.pyx because it changed.
Compiling MACS2/IO/PeakIO.pyx because it changed.
Compiling MACS2/IO/BedGraphIO.pyx because it changed.
Compiling MACS2/IO/FixWidthTrack.pyx because it changed.
Compiling MACS2/IO/PairedEndTrack.pyx because it changed.
Compiling MACS2/IO/BedGraph.pyx because it changed.
Compiling MACS2/IO/ScoreTrack.pyx because it changed.
Compiling MACS2/IO/CallPeakUnit.pyx because it changed.
[ 1/13] Cythonizing MACS2/IO/BedGraph.pyx
[ 2/13] Cythonizing MACS2/IO/BedGraphIO.pyx
[ 3/13] Cythonizing MACS2/IO/CallPeakUnit.pyx
[ 4/13] Cythonizing MACS2/IO/FixWidthTrack.pyx
[ 5/13] Cythonizing MACS2/IO/PairedEndTrack.pyx
[ 6/13] Cythonizing MACS2/IO/Parser.pyx
[ 7/13] Cythonizing MACS2/IO/PeakIO.pyx
[ 8/13] Cythonizing MACS2/IO/ScoreTrack.pyx
[ 9/13] Cythonizing MACS2/PeakDetect.pyx
[10/13] Cythonizing MACS2/PeakModel.pyx
[11/13] Cythonizing MACS2/Pileup.pyx
[12/13] Cythonizing MACS2/Prob.pyx
[13/13] Cythonizing MACS2/Signal.pyx
/usr/lib/python3/dist-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
!!
********************************************************************************
Requirements should be satisfied by a PEP 517 installer.
If you are using pip, you can try `pip install --use-pep517`.
********************************************************************************
!!
dist.fetch_build_eggs(dist.setup_requires)
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2
copying MACS2/Constants.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2
copying MACS2/OptValidator.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2
copying MACS2/OutputWriter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2
copying MACS2/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2
copying MACS2/bdgbroadcall_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2
copying MACS2/bdgcmp_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2
copying MACS2/bdgdiff_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2
copying MACS2/bdgopt_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2
copying MACS2/bdgpeakcall_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2
copying MACS2/callpeak_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2
copying MACS2/cmbreps_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2
copying MACS2/diffpeak_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2
copying MACS2/filterdup_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2
copying MACS2/pileup_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2
copying MACS2/predictd_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2
copying MACS2/randsample_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2
copying MACS2/refinepeak_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2/IO
copying MACS2/IO/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2/IO
copying MACS2/cPosValCalculation.pxd -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2
copying MACS2/khash.pxd -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2
running build_ext
building 'MACS2.Prob' extension
creating build
creating build/temp.linux-armv7l-cpython-311
creating build/temp.linux-armv7l-cpython-311/MACS2
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS2/Prob.c -o build/temp.linux-armv7l-cpython-311/MACS2/Prob.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-311/MACS2/Prob.o -L/usr/lib/arm-linux-gnueabihf -lm -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2/Prob.cpython-311-arm-linux-gnueabihf.so
building 'MACS2.IO.Parser' extension
creating build/temp.linux-armv7l-cpython-311/MACS2/IO
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS2/IO/Parser.c -o build/temp.linux-armv7l-cpython-311/MACS2/IO/Parser.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-311/MACS2/IO/Parser.o -L/usr/lib/arm-linux-gnueabihf -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2/IO/Parser.cpython-311-arm-linux-gnueabihf.so
building 'MACS2.Pileup' extension
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./MACS2 -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS2/Pileup.c -o build/temp.linux-armv7l-cpython-311/MACS2/Pileup.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./MACS2 -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS2/cPosValCalculation.c -o build/temp.linux-armv7l-cpython-311/MACS2/cPosValCalculation.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-311/MACS2/Pileup.o build/temp.linux-armv7l-cpython-311/MACS2/cPosValCalculation.o -L/usr/lib/arm-linux-gnueabihf -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2/Pileup.cpython-311-arm-linux-gnueabihf.so
building 'MACS2.PeakModel' extension
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS2/PeakModel.c -o build/temp.linux-armv7l-cpython-311/MACS2/PeakModel.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-311/MACS2/PeakModel.o -L/usr/lib/arm-linux-gnueabihf -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2/PeakModel.cpython-311-arm-linux-gnueabihf.so
building 'MACS2.PeakDetect' extension
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c MACS2/PeakDetect.c -o build/temp.linux-armv7l-cpython-311/MACS2/PeakDetect.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-311/MACS2/PeakDetect.o -L/usr/lib/arm-linux-gnueabihf -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2/PeakDetect.cpython-311-arm-linux-gnueabihf.so
building 'MACS2.Signal' extension
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS2/Signal.c -o build/temp.linux-armv7l-cpython-311/MACS2/Signal.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-311/MACS2/Signal.o -L/usr/lib/arm-linux-gnueabihf -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2/Signal.cpython-311-arm-linux-gnueabihf.so
building 'MACS2.IO.PeakIO' extension
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c MACS2/IO/PeakIO.c -o build/temp.linux-armv7l-cpython-311/MACS2/IO/PeakIO.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-311/MACS2/IO/PeakIO.o -L/usr/lib/arm-linux-gnueabihf -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2/IO/PeakIO.cpython-311-arm-linux-gnueabihf.so
building 'MACS2.IO.BedGraphIO' extension
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c MACS2/IO/BedGraphIO.c -o build/temp.linux-armv7l-cpython-311/MACS2/IO/BedGraphIO.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-311/MACS2/IO/BedGraphIO.o -L/usr/lib/arm-linux-gnueabihf -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2/IO/BedGraphIO.cpython-311-arm-linux-gnueabihf.so
building 'MACS2.IO.FixWidthTrack' extension
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS2/IO/FixWidthTrack.c -o build/temp.linux-armv7l-cpython-311/MACS2/IO/FixWidthTrack.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-311/MACS2/IO/FixWidthTrack.o -L/usr/lib/arm-linux-gnueabihf -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2/IO/FixWidthTrack.cpython-311-arm-linux-gnueabihf.so
building 'MACS2.IO.PairedEndTrack' extension
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS2/IO/PairedEndTrack.c -o build/temp.linux-armv7l-cpython-311/MACS2/IO/PairedEndTrack.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-311/MACS2/IO/PairedEndTrack.o -L/usr/lib/arm-linux-gnueabihf -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2/IO/PairedEndTrack.cpython-311-arm-linux-gnueabihf.so
building 'MACS2.IO.BedGraph' extension
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c MACS2/IO/BedGraph.c -o build/temp.linux-armv7l-cpython-311/MACS2/IO/BedGraph.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-311/MACS2/IO/BedGraph.o -L/usr/lib/arm-linux-gnueabihf -lm -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2/IO/BedGraph.cpython-311-arm-linux-gnueabihf.so
building 'MACS2.IO.ScoreTrack' extension
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS2/IO/ScoreTrack.c -o build/temp.linux-armv7l-cpython-311/MACS2/IO/ScoreTrack.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-311/MACS2/IO/ScoreTrack.o -L/usr/lib/arm-linux-gnueabihf -lm -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2/IO/ScoreTrack.cpython-311-arm-linux-gnueabihf.so
building 'MACS2.IO.CallPeakUnit' extension
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS2/IO/CallPeakUnit.c -o build/temp.linux-armv7l-cpython-311/MACS2/IO/CallPeakUnit.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-311/MACS2/IO/CallPeakUnit.o -L/usr/lib/arm-linux-gnueabihf -lm -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2/IO/CallPeakUnit.cpython-311-arm-linux-gnueabihf.so
running build_scripts
creating build/scripts-3.11
copying and adjusting bin/macs2 -> build/scripts-3.11
changing mode of build/scripts-3.11/macs2 from 644 to 755
PYTHONPATH=./.pybuild/cpython3_$(py3versions -v -d)_MACS2/build/ help2man \
--no-discard-stderr --no-info \
--name "macs2 \- Model\-based Analysis for ChIP\-Sequencing" "python3 bin/macs2" > debian/macs2.1
for subcommand in callpeak bdgpeakcall bdgbroadcall bdgcmp bdgopt cmbreps bdgdiff filterdup predictd pileup randsample refinepeak; do printf \
"[NAME]\nmacs2_${subcommand} \- Model\-based Analysis for ChIP\-Sequencing\n" \
> debian/macs2_${subcommand}-man-include; done
for subcommand in callpeak bdgpeakcall bdgbroadcall bdgcmp bdgopt cmbreps bdgdiff filterdup predictd pileup randsample refinepeak; do \
PYTHONPATH=./.pybuild/cpython3_$(py3versions -v -d)_MACS2/build/ help2man \
--no-discard-stderr --no-info --version-string="2.2.9.1" \
--include debian/macs2_${subcommand}-man-include \
"python3 bin/macs2 ${subcommand}" > \
debian/macs2_${subcommand}.1; done
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_test
I: pybuild base:291: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build; python3.11 -m pytest test
============================= test session starts ==============================
platform linux -- Python 3.11.5, pytest-7.4.2, pluggy-1.3.0
rootdir: /<<PKGBUILDDIR>>
collected 42 items
test/test_BedGraph.py .... [ 9%]
test/test_FixWidthTrack.py .... [ 19%]
test/test_PairedEndTrack.py .... [ 28%]
test/test_Parser.py ... [ 35%]
test/test_PeakIO.py ... [ 42%]
test/test_Pileup.py .. [ 47%]
test/test_Prob.py ................ [ 85%]
test/test_ScoreTrack.py .... [ 95%]
test/test_Signal.py s. [100%]
======================== 41 passed, 1 skipped in 1.81s =========================
cd test && for PY3VER in 3.11; do \
export PATH=/<<PKGBUILDDIR>>/build/scripts-${PY3VER}:$PATH \
&& export PYTHONPATH=/<<PKGBUILDDIR>>/.pybuild/cpython3_${PY3VER}_MACS2/build \
&& ./cmdlinetest macs2.2.9.1-1-${PY3VER} ; done
1. callpeak
1.1 callpeak narrow
1.2 callpeak broad
1.3 callpeak on PE narrow/broad
2. pileup
3. filterdup
4. predictd
5. randsample
6. refinepeak
7. bdgcmp
8. bdgpeakcall
9. bdgbroadcall
10. bdgdiff
11. cmbreps
12. bdgopt
13. 50k contigs with buffersize
13.1 callpeak
13.2 filterdup
13.3 pileup
13.4 randsample
14. search for errors or warnings in log files
checking macs2.2.9.1-1-3.11_run_50kcontigs/run_callpeak_50kcontigs.log...
... clear!
checking macs2.2.9.1-1-3.11_run_50kcontigs/run_filterdup_50kcontigs.log...
... clear!
checking macs2.2.9.1-1-3.11_run_50kcontigs/run_pileup_ChIP.bed.log...
... clear!
checking macs2.2.9.1-1-3.11_run_50kcontigs/run_randsample.log...
... clear!
checking macs2.2.9.1-1-3.11_run_bdgbroadcall/run_bdgbroadcall_w_prefix.log...
... clear!
checking macs2.2.9.1-1-3.11_run_bdgcmp/run_bdgcmp.log...
... clear!
checking macs2.2.9.1-1-3.11_run_bdgdiff/run_bdgdiff_w_o_file.log...
... clear!
checking macs2.2.9.1-1-3.11_run_bdgdiff/run_bdgdiff_w_prefix.log...
... clear!
checking macs2.2.9.1-1-3.11_run_bdgopt/run_bdgopt_max.log...
... clear!
checking macs2.2.9.1-1-3.11_run_bdgopt/run_bdgopt_min.log...
... clear!
checking macs2.2.9.1-1-3.11_run_bdgpeakcall/run_bdgpeakcall_cutoff.log...
... clear!
checking macs2.2.9.1-1-3.11_run_bdgpeakcall/run_bdgpeakcall_w_prefix.log...
... clear!
checking macs2.2.9.1-1-3.11_run_callpeak_broad/run_callpeak_broad.log...
... clear!
checking macs2.2.9.1-1-3.11_run_callpeak_narrow/run_callpeak_narrow0.log...
... clear!
checking macs2.2.9.1-1-3.11_run_callpeak_narrow/run_callpeak_narrow1.log...
... clear!
checking macs2.2.9.1-1-3.11_run_callpeak_narrow/run_callpeak_narrow2.log...
... clear!
checking macs2.2.9.1-1-3.11_run_callpeak_narrow/run_callpeak_narrow3.log...
... clear!
checking macs2.2.9.1-1-3.11_run_callpeak_narrow/run_callpeak_narrow4.log...
... clear!
checking macs2.2.9.1-1-3.11_run_callpeak_narrow/run_callpeak_narrow5.log...
... clear!
checking macs2.2.9.1-1-3.11_run_callpeak_narrow_revert/run_callpeak_narrow_revert.log...
... clear!
checking macs2.2.9.1-1-3.11_run_callpeak_pe_broad/run_callpeak_bampe_broad.log...
... clear!
checking macs2.2.9.1-1-3.11_run_callpeak_pe_broad/run_callpeak_bedpe_broad.log...
... clear!
checking macs2.2.9.1-1-3.11_run_callpeak_pe_narrow/run_callpeak_bampe_narrow.log...
... clear!
checking macs2.2.9.1-1-3.11_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow.log...
... clear!
checking macs2.2.9.1-1-3.11_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip.log...
... clear!
checking macs2.2.9.1-1-3.11_run_cmbreps/run_cmbreps_fisher.log...
... clear!
checking macs2.2.9.1-1-3.11_run_cmbreps/run_cmbreps_max.log...
... clear!
checking macs2.2.9.1-1-3.11_run_cmbreps/run_cmbreps_mean.log...
... clear!
checking macs2.2.9.1-1-3.11_run_filterdup/run_filterdup.log...
... clear!
checking macs2.2.9.1-1-3.11_run_filterdup/run_filterdup_d.log...
... clear!
checking macs2.2.9.1-1-3.11_run_filterdup/run_filterdup_pe.log...
... clear!
checking macs2.2.9.1-1-3.11_run_filterdup/run_filterdup_pe_d.log...
... clear!
checking macs2.2.9.1-1-3.11_run_pileup/run_pileup_CTRL.bed.log...
... clear!
checking macs2.2.9.1-1-3.11_run_pileup/run_pileup_CTRLPE.bampe.log...
... clear!
checking macs2.2.9.1-1-3.11_run_pileup/run_pileup_CTRLPE.bedpe.log...
... clear!
checking macs2.2.9.1-1-3.11_run_pileup/run_pileup_ChIP.bed.log...
... clear!
checking macs2.2.9.1-1-3.11_run_pileup/run_pileup_ChIPPE.bampe.log...
... clear!
checking macs2.2.9.1-1-3.11_run_pileup/run_pileup_ChIPPE.bedpe.log...
... clear!
checking macs2.2.9.1-1-3.11_run_predictd/run_predictd.log...
... clear!
checking macs2.2.9.1-1-3.11_run_randsample/run_randsample.log...
... clear!
checking macs2.2.9.1-1-3.11_run_randsample/run_randsample_bampe.log...
... clear!
checking macs2.2.9.1-1-3.11_run_randsample/run_randsample_bedpe.log...
... clear!
checking macs2.2.9.1-1-3.11_run_refinepeak/run_refinepeak_w_ofile.log...
... clear!
checking macs2.2.9.1-1-3.11_run_refinepeak/run_refinepeak_w_prefix.log...
... clear!
15. compare with standard outputs
14.1.1 checking 50kcontigs run_callpeak_50kcontigs_peaks.narrowPeak ...
... success!
14.1.2 checking 50kcontigs run_callpeak_50kcontigs_summits.bed ...
... success!
14.1.3 checking 50kcontigs run_filterdup_result.bed ...
... success!
14.1.4 checking 50kcontigs run_pileup_ChIP.bed.bdg ...
... success!
14.2.1 checking bdgbroadcall run_bdgbroadcall_w_prefix_c2.0_C1.50_l200_g30_G800_broad.bed12 ...
... success!
14.3.1 checking bdgcmp run_bdgcmp_FE.bdg ...
... success!
14.3.2 checking bdgcmp run_bdgcmp_ppois.bdg ...
... success!
14.4.1 checking bdgdiff common.bed ...
... success!
14.4.2 checking bdgdiff cond1.bed ...
... success!
14.4.3 checking bdgdiff cond2.bed ...
... success!
14.4.4 checking bdgdiff run_bdgdiff_prefix_c3.0_common.bed ...
... success!
14.4.5 checking bdgdiff run_bdgdiff_prefix_c3.0_cond1.bed ...
... success!
14.4.6 checking bdgdiff run_bdgdiff_prefix_c3.0_cond2.bed ...
... success!
14.5.1 checking bdgpeakcall run_bdgpeakcall_w_prefix_c2.0_l200_g30_peaks.narrowPeak ...
... success!
14.6.1 checking callpeak_broad run_callpeak_broad_control_lambda.bdg ...
... success!
14.6.2 checking callpeak_broad run_callpeak_broad_peaks.broadPeak ...
... success!
14.6.3 checking callpeak_broad run_callpeak_broad_peaks.gappedPeak ...
... success!
14.6.4 checking callpeak_broad run_callpeak_broad_treat_pileup.bdg ...
... success!
14.7.1 checking callpeak_narrow run_callpeak_narrow0_control_lambda.bdg ...
... success!
14.7.2 checking callpeak_narrow run_callpeak_narrow0_peaks.narrowPeak ...
... success!
14.7.3 checking callpeak_narrow run_callpeak_narrow0_summits.bed ...
... success!
14.7.4 checking callpeak_narrow run_callpeak_narrow0_treat_pileup.bdg ...
... success!
14.7.5 checking callpeak_narrow run_callpeak_narrow1_control_lambda.bdg ...
... success!
14.7.6 checking callpeak_narrow run_callpeak_narrow1_peaks.narrowPeak ...
... success!
14.7.7 checking callpeak_narrow run_callpeak_narrow1_summits.bed ...
... success!
14.7.8 checking callpeak_narrow run_callpeak_narrow1_treat_pileup.bdg ...
... success!
14.7.9 checking callpeak_narrow run_callpeak_narrow2_control_lambda.bdg ...
... success!
14.7.10 checking callpeak_narrow run_callpeak_narrow2_peaks.narrowPeak ...
... success!
14.7.11 checking callpeak_narrow run_callpeak_narrow2_summits.bed ...
... success!
14.7.12 checking callpeak_narrow run_callpeak_narrow2_treat_pileup.bdg ...
... success!
14.7.13 checking callpeak_narrow run_callpeak_narrow3_control_lambda.bdg ...
... success!
14.7.14 checking callpeak_narrow run_callpeak_narrow3_peaks.narrowPeak ...
... success!
14.7.15 checking callpeak_narrow run_callpeak_narrow3_summits.bed ...
... success!
14.7.16 checking callpeak_narrow run_callpeak_narrow3_treat_pileup.bdg ...
... success!
14.7.17 checking callpeak_narrow run_callpeak_narrow4_control_lambda.bdg ...
... success!
14.7.18 checking callpeak_narrow run_callpeak_narrow4_peaks.narrowPeak ...
... success!
14.7.19 checking callpeak_narrow run_callpeak_narrow4_summits.bed ...
... success!
14.7.20 checking callpeak_narrow run_callpeak_narrow4_treat_pileup.bdg ...
... success!
14.7.21 checking callpeak_narrow run_callpeak_narrow5_control_lambda.bdg ...
... success!
14.7.22 checking callpeak_narrow run_callpeak_narrow5_peaks.narrowPeak ...
... success!
14.7.23 checking callpeak_narrow run_callpeak_narrow5_summits.bed ...
... success!
14.7.24 checking callpeak_narrow run_callpeak_narrow5_treat_pileup.bdg ...
... success!
14.8.1 checking callpeak_narrow_revert run_callpeak_narrow_revert_control_lambda.bdg ...
... success!
14.8.2 checking callpeak_narrow_revert run_callpeak_narrow_revert_peaks.narrowPeak ...
... success!
14.8.3 checking callpeak_narrow_revert run_callpeak_narrow_revert_summits.bed ...
... success!
14.8.4 checking callpeak_narrow_revert run_callpeak_narrow_revert_treat_pileup.bdg ...
... success!
14.9.1 checking callpeak_pe_broad run_callpeak_bampe_broad_control_lambda.bdg ...
... success!
14.9.2 checking callpeak_pe_broad run_callpeak_bampe_broad_peaks.broadPeak ...
... success!
14.9.3 checking callpeak_pe_broad run_callpeak_bampe_broad_peaks.gappedPeak ...
... success!
14.9.4 checking callpeak_pe_broad run_callpeak_bampe_broad_treat_pileup.bdg ...
... success!
14.9.5 checking callpeak_pe_broad run_callpeak_bedpe_broad_control_lambda.bdg ...
... success!
14.9.6 checking callpeak_pe_broad run_callpeak_bedpe_broad_peaks.broadPeak ...
... success!
14.9.7 checking callpeak_pe_broad run_callpeak_bedpe_broad_peaks.gappedPeak ...
... success!
14.9.8 checking callpeak_pe_broad run_callpeak_bedpe_broad_treat_pileup.bdg ...
... success!
14.10.1 checking callpeak_pe_narrow run_callpeak_bampe_narrow_control_lambda.bdg ...
... success!
14.10.2 checking callpeak_pe_narrow run_callpeak_bampe_narrow_peaks.narrowPeak ...
... success!
14.10.3 checking callpeak_pe_narrow run_callpeak_bampe_narrow_summits.bed ...
... success!
14.10.4 checking callpeak_pe_narrow run_callpeak_bampe_narrow_treat_pileup.bdg ...
... success!
14.10.5 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_control_lambda.bdg ...
... success!
14.10.6 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_peaks.narrowPeak ...
... success!
14.10.7 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_summits.bed ...
... success!
14.10.8 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_treat_pileup.bdg ...
... success!
14.10.9 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_control_lambda.bdg ...
... success!
14.10.10 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_peaks.narrowPeak ...
... success!
14.10.11 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_summits.bed ...
... success!
14.10.12 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_treat_pileup.bdg ...
... success!
14.11.1 checking cmbreps run_cmbreps_fisher.bdg ...
... success!
14.11.2 checking cmbreps run_cmbreps_max.bdg ...
... success!
14.11.3 checking cmbreps run_cmbreps_mean.bdg ...
... success!
14.12.1 checking filterdup run_filterdup_result.bed ...
... success!
14.12.2 checking filterdup run_filterdup_result_pe.bedpe ...
... success!
14.13.1 checking pileup run_pileup_CTRL.bed.bdg ...
... success!
14.13.2 checking pileup run_pileup_CTRLPE.bampe.bdg ...
... success!
14.13.3 checking pileup run_pileup_CTRLPE.bedpe.bdg ...
... success!
14.13.4 checking pileup run_pileup_ChIP.bed.bdg ...
... success!
14.13.5 checking pileup run_pileup_ChIPPE.bampe.bdg ...
... success!
14.13.6 checking pileup run_pileup_ChIPPE.bedpe.bdg ...
... success!
14.14.1 checking refinepeak run_refinepeak_w_ofile.bed ...
... success!
14.14.2 checking refinepeak run_refinepeak_w_prefix_refinepeak.bed ...
... success!
14.15.1 checking bdgopt run_bdgopt_max.bdg ...
... success!
14.15.2 checking bdgopt run_bdgopt_min.bdg ...
... success!
16. brief speed test
CPU time (mm:ss): 00:04:16
Max mem (KB): 236292
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
dh_auto_install --destdir=debian/macs/ -a -O--buildsystem=pybuild
I: pybuild base:291: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/macs
/usr/lib/python3/dist-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
!!
********************************************************************************
Requirements should be satisfied by a PEP 517 installer.
If you are using pip, you can try `pip install --use-pep517`.
********************************************************************************
!!
dist.fetch_build_eggs(dist.setup_requires)
running install
/usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
!!
********************************************************************************
Please avoid running ``setup.py`` directly.
Instead, use pypa/build, pypa/installer or other
standards-based tools.
See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
********************************************************************************
!!
self.initialize_options()
running build
running build_py
running build_ext
running build_scripts
running install_lib
creating /<<PKGBUILDDIR>>/debian/macs/usr
creating /<<PKGBUILDDIR>>/debian/macs/usr/lib
creating /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11
creating /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages
creating /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2/Constants.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2/OptValidator.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2/OutputWriter.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2/__init__.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2/bdgbroadcall_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2/bdgcmp_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2/bdgdiff_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2/bdgopt_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2/bdgpeakcall_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2/callpeak_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2/cmbreps_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2/diffpeak_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2/filterdup_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2/pileup_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2/predictd_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2/randsample_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2/refinepeak_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2
creating /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2/IO/__init__.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2/IO/Parser.cpython-311-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2/IO/PeakIO.cpython-311-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2/IO/BedGraphIO.cpython-311-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2/IO/FixWidthTrack.cpython-311-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2/IO/PairedEndTrack.cpython-311-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2/IO/BedGraph.cpython-311-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2/IO/ScoreTrack.cpython-311-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2/IO/CallPeakUnit.cpython-311-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2/IO
creating /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2/IO/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2/IO/__pycache__/__init__.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2/IO/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2/cPosValCalculation.pxd -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2/khash.pxd -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2/Prob.cpython-311-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2/Pileup.cpython-311-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2/PeakModel.cpython-311-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2/PeakDetect.cpython-311-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2/Signal.cpython-311-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2
creating /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2/__pycache__/__init__.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2/__pycache__/Constants.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2/__pycache__/callpeak_cmd.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2/__pycache__/OptValidator.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2/__pycache__/OutputWriter.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2/__pycache__/pileup_cmd.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2/__pycache__/filterdup_cmd.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2/__pycache__/predictd_cmd.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2/__pycache__/randsample_cmd.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2/__pycache__/refinepeak_cmd.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2/__pycache__/bdgcmp_cmd.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2/__pycache__/bdgpeakcall_cmd.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2/__pycache__/bdgbroadcall_cmd.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2/__pycache__/bdgdiff_cmd.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2/__pycache__/cmbreps_cmd.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_MACS2/build/MACS2/__pycache__/bdgopt_cmd.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2/__pycache__
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2/Constants.py to Constants.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2/OptValidator.py to OptValidator.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2/OutputWriter.py to OutputWriter.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2/__init__.py to __init__.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2/bdgbroadcall_cmd.py to bdgbroadcall_cmd.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2/bdgcmp_cmd.py to bdgcmp_cmd.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2/bdgdiff_cmd.py to bdgdiff_cmd.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2/bdgopt_cmd.py to bdgopt_cmd.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2/bdgpeakcall_cmd.py to bdgpeakcall_cmd.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2/callpeak_cmd.py to callpeak_cmd.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2/cmbreps_cmd.py to cmbreps_cmd.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2/diffpeak_cmd.py to diffpeak_cmd.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2/filterdup_cmd.py to filterdup_cmd.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2/pileup_cmd.py to pileup_cmd.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2/predictd_cmd.py to predictd_cmd.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2/randsample_cmd.py to randsample_cmd.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2/refinepeak_cmd.py to refinepeak_cmd.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2/IO/__init__.py to __init__.cpython-311.pyc
running install_egg_info
running egg_info
creating MACS2.egg-info
writing MACS2.egg-info/PKG-INFO
writing dependency_links to MACS2.egg-info/dependency_links.txt
writing requirements to MACS2.egg-info/requires.txt
writing top-level names to MACS2.egg-info/top_level.txt
writing manifest file 'MACS2.egg-info/SOURCES.txt'
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
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dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
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dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
reading manifest file 'MACS2.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no previously-included files found matching '.gitignore'
warning: no previously-included files found matching '.travis.yml'
warning: no previously-included files matching '.ipynb_checkpoints/*' found anywhere in distribution
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adding license file 'LICENSE'
writing manifest file 'MACS2.egg-info/SOURCES.txt'
Copying MACS2.egg-info to /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.11/dist-packages/MACS2-2.2.9.1.egg-info
Skipping SOURCES.txt
running install_scripts
creating /<<PKGBUILDDIR>>/debian/macs/usr/bin
copying build/scripts-3.11/macs2 -> /<<PKGBUILDDIR>>/debian/macs/usr/bin
changing mode of /<<PKGBUILDDIR>>/debian/macs/usr/bin/macs2 to 755
dh_installdocs -a -O--buildsystem=pybuild
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dh_installexamples -a -O--buildsystem=pybuild
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dh_compress -a -O--buildsystem=pybuild
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dh_strip -a -O--buildsystem=pybuild
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dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'macs' in '../macs_2.2.9.1-1_armhf.deb'.
dpkg-deb: building package 'macs-dbgsym' in '../macs-dbgsym_2.2.9.1-1_armhf.deb'.
dpkg-genbuildinfo --build=any -O../macs_2.2.9.1-1_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> -O../macs_2.2.9.1-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-source: info: using options from macs-2.2.9.1/debian/source/options: --extend-diff-ignore=(^|/)(.*\.c)$|.*[.]egg-info/
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2023-09-17T06:19:29Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
macs_2.2.9.1-1_armhf.changes:
-----------------------------
Format: 1.8
Date: Wed, 09 Aug 2023 12:18:49 +0200
Source: macs
Binary: macs macs-dbgsym
Architecture: armhf
Version: 2.2.9.1-1
Distribution: trixie-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Michael R. Crusoe <crusoe@debian.org>
Description:
macs - Model-based Analysis of ChIP-Seq on short reads sequencers
Closes: 1041203 1042180
Changes:
macs (2.2.9.1-1) unstable; urgency=medium
.
* New upstream release. Closes: #1042180, #1041203
* d/patches: drop enable_python3.10.patch & no-pip.patch; they are no
longer needed
* d/patches: forward patches upstream as appropriate.
* no longer call dh_auto_clean to avoid call to "setup.py clean" which
always runs cython.
* Standards-Version: 4.6.2 (routine-update)
* Build-Depends: s/dh-python/dh-sequence-python3/ (routine-update)
* Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
Repository-Browse.
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+------------------------------------------------------------------------------+
| Package contents |
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macs-dbgsym_2.2.9.1-1_armhf.deb
-------------------------------
new Debian package, version 2.0.
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Depends: macs (= 2.2.9.1-1)
Section: debug
Priority: optional
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lrwxrwxrwx root/root 0 2023-08-09 10:18 ./usr/share/doc/macs-dbgsym -> macs
macs_2.2.9.1-1_armhf.deb
------------------------
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966 bytes, 18 lines control
5255 bytes, 60 lines md5sums
255 bytes, 12 lines * postinst #!/bin/sh
368 bytes, 12 lines * prerm #!/bin/sh
Package: macs
Version: 2.2.9.1-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 5146
Depends: cython3, python3 (<< 3.12), python3 (>= 3.11~), python3-numpy, python3:any, libc6 (>= 2.29)
Section: science
Priority: optional
Homepage: https://github.com/taoliu/MACS/
Description: Model-based Analysis of ChIP-Seq on short reads sequencers
MACS empirically models the length of the sequenced ChIP fragments, which
tends to be shorter than sonication or library construction size estimates,
and uses it to improve the spatial resolution of predicted binding sites.
MACS also uses a dynamic Poisson distribution to effectively capture local
biases in the genome sequence, allowing for more sensitive and robust
prediction. MACS compares favorably to existing ChIP-Seq peak-finding
algorithms, is publicly available open source, and can be used for ChIP-Seq
with or without control samples.
drwxr-xr-x root/root 0 2023-08-09 10:18 ./
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-rw-r--r-- root/root 901 2023-08-09 10:18 ./usr/share/man/man1/macs2_bdgopt.1.gz
-rw-r--r-- root/root 914 2023-08-09 10:18 ./usr/share/man/man1/macs2_bdgpeakcall.1.gz
-rw-r--r-- root/root 5694 2023-08-09 10:18 ./usr/share/man/man1/macs2_callpeak.1.gz
-rw-r--r-- root/root 772 2023-08-09 10:18 ./usr/share/man/man1/macs2_cmbreps.1.gz
-rw-r--r-- root/root 1947 2023-08-09 10:18 ./usr/share/man/man1/macs2_filterdup.1.gz
-rw-r--r-- root/root 1757 2023-08-09 10:18 ./usr/share/man/man1/macs2_pileup.1.gz
-rw-r--r-- root/root 1665 2023-08-09 10:18 ./usr/share/man/man1/macs2_predictd.1.gz
-rw-r--r-- root/root 1548 2023-08-09 10:18 ./usr/share/man/man1/macs2_randsample.1.gz
-rw-r--r-- root/root 1336 2023-08-09 10:18 ./usr/share/man/man1/macs2_refinepeak.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 1433764
Build-Time: 1654
Distribution: trixie-staging
Host Architecture: armhf
Install-Time: 520
Job: macs_2.2.9.1-1
Machine Architecture: armhf
Package: macs
Package-Time: 2230
Source-Version: 2.2.9.1-1
Space: 1433764
Status: successful
Version: 2.2.9.1-1
--------------------------------------------------------------------------------
Finished at 2023-09-17T06:19:29Z
Build needed 00:37:10, 1433764k disk space