macs →
2.2.7.1-5+b1 →
armhf → 2022-04-21 02:43:50
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02
+==============================================================================+
| macs 2.2.7.1-5+b1 (armhf) Thu, 21 Apr 2022 01:55:57 +0000 |
+==============================================================================+
Package: macs
Version: 2.2.7.1-5+b1
Source Version: 2.2.7.1-5
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-b818d298-5ad5-4b21-b744-d3c2a4ffcc4f' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [13.0 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [13.9 MB]
Fetched 26.8 MB in 9s (2856 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http://172.17.4.1/private/dists/bookworm-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'macs' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/macs.git
Please use:
git clone https://salsa.debian.org/med-team/macs.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 136 MB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main macs 2.2.7.1-5 (dsc) [2102 B]
Get:2 http://172.17.4.1/private bookworm-staging/main macs 2.2.7.1-5 (tar) [135 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main macs 2.2.7.1-5 (diff) [1268 kB]
Fetched 136 MB in 18s (7624 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/macs-I3qVV1/macs-2.2.7.1' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/macs-I3qVV1' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-N3MPev/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-N3MPev/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-N3MPev/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-N3MPev/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-N3MPev/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-N3MPev/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-N3MPev/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-N3MPev/apt_archive ./ Packages [432 B]
Fetched 2108 B in 0s (8904 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
netbase sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 51 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-N3MPev/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (67.6 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12608 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-python, python3-all-dev, python3-numpy, python3-setuptools, python3-pip, python3-pytest, cython3, help2man, procps
Filtered Build-Depends: debhelper-compat (= 13), dh-python, python3-all-dev, python3-numpy, python3-setuptools, python3-pip, python3-pytest, cython3, help2man, procps
dpkg-deb: building package 'sbuild-build-depends-macs-dummy' in '/<<BUILDDIR>>/resolver-N3MPev/apt_archive/sbuild-build-depends-macs-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-macs-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-N3MPev/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-N3MPev/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-N3MPev/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-N3MPev/apt_archive ./ Sources [543 B]
Get:5 copy:/<<BUILDDIR>>/resolver-N3MPev/apt_archive ./ Packages [623 B]
Fetched 2499 B in 0s (11.9 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install macs build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
cython3 debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file
gcc-12-base gettext gettext-base groff-base help2man intltool-debian
libarchive-zip-perl libblas3 libdebhelper-perl libelf1 libexpat1
libexpat1-dev libfile-stripnondeterminism-perl libgfortran5 libicu67
libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3
liblocale-gettext-perl libmagic-mgc libmagic1 libmpdec3 libncurses6
libpipeline1 libprocps8 libpython3-all-dev libpython3-dev libpython3-stdlib
libpython3.10 libpython3.10-dev libpython3.10-minimal libpython3.10-stdlib
libpython3.9 libpython3.9-dev libpython3.9-minimal libpython3.9-stdlib
libsigsegv2 libsmartcols1 libsub-override-perl libtool libuchardet0 libxml2
m4 man-db media-types openssl po-debconf procps python3 python3-all
python3-all-dev python3-attr python3-dev python3-distutils python3-iniconfig
python3-lib2to3 python3-minimal python3-more-itertools python3-numpy
python3-packaging python3-pip python3-pkg-resources python3-pluggy
python3-py python3-pyparsing python3-pytest python3-setuptools python3-toml
python3-wheel python3.10 python3.10-dev python3.10-minimal python3.9
python3.9-dev python3.9-minimal zlib1g zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc cython-doc dh-make flit
python3-build python3-tomli python3-installer gettext-doc libasprintf-dev
libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk
m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk
python3-venv python-attr-doc gfortran python-numpy-doc subversion
python-pyparsing-doc python-setuptools-doc python3.10-venv python3.10-doc
binfmt-support python3.9-venv python3.9-doc
Recommended packages:
curl | wget | lynx libarchive-cpio-perl javascript-common libgpm2
libltdl-dev libmail-sendmail-perl psmisc python3-pygments
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
cython3 debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file
gcc-12-base gettext gettext-base groff-base help2man intltool-debian
libarchive-zip-perl libblas3 libdebhelper-perl libelf1 libexpat1
libexpat1-dev libfile-stripnondeterminism-perl libgfortran5 libicu67
libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3
liblocale-gettext-perl libmagic-mgc libmagic1 libmpdec3 libncurses6
libpipeline1 libprocps8 libpython3-all-dev libpython3-dev libpython3-stdlib
libpython3.10 libpython3.10-dev libpython3.10-minimal libpython3.10-stdlib
libpython3.9 libpython3.9-dev libpython3.9-minimal libpython3.9-stdlib
libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db
media-types openssl po-debconf procps python3 python3-all python3-all-dev
python3-attr python3-dev python3-distutils python3-iniconfig python3-lib2to3
python3-minimal python3-more-itertools python3-numpy python3-packaging
python3-pip python3-pkg-resources python3-pluggy python3-py
python3-pyparsing python3-pytest python3-setuptools python3-toml
python3-wheel python3.10 python3.10-dev python3.10-minimal python3.9
python3.9-dev python3.9-minimal sbuild-build-depends-macs-dummy zlib1g-dev
The following packages will be upgraded:
libsmartcols1 zlib1g
2 upgraded, 90 newly installed, 0 to remove and 49 not upgraded.
Need to get 51.5 MB of archives.
After this operation, 210 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-N3MPev/apt_archive ./ sbuild-build-depends-macs-dummy 0.invalid.0 [912 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf liblocale-gettext-perl armhf 1.07-4+b2 [18.3 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10-minimal armhf 3.10.4-1 [811 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf libexpat1 armhf 2.4.8-1 [84.1 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf zlib1g armhf 1:1.2.11.dfsg-4 [84.2 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf python3.10-minimal armhf 3.10.4-1 [1633 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf python3-minimal armhf 3.10.4-1 [38.6 kB]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf media-types all 7.1.0 [33.2 kB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf libmpdec3 armhf 2.5.1-2+rpi1 [73.5 kB]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10-stdlib armhf 3.10.4-1 [1625 kB]
Get:11 http://172.17.4.1/private bookworm-staging/main armhf python3.10 armhf 3.10.4-1 [536 kB]
Get:12 http://172.17.4.1/private bookworm-staging/main armhf libpython3-stdlib armhf 3.10.4-1 [21.7 kB]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf python3 armhf 3.10.4-1 [38.1 kB]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf libpython3.9-minimal armhf 3.9.12-1+rpi1 [794 kB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf python3.9-minimal armhf 3.9.12-1+rpi1 [1595 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf libsmartcols1 armhf 2.38-4 [149 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-8 [793 kB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.38-4 [137 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.5-1 [32.9 kB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.10.2-1 [1362 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf libncurses6 armhf 6.3-2 [79.6 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf libprocps8 armhf 2:3.3.17-7 [60.7 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf procps armhf 2:3.3.17-7 [475 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf openssl armhf 1.1.1n-1 [816 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf ca-certificates all 20211016 [156 kB]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.41-2 [295 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.41-2 [119 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.41-2 [65.8 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-6 [171 kB]
Get:31 http://172.17.4.1/private bookworm-staging/main armhf libsigsegv2 armhf 2.14-1 [36.6 kB]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-6 [510 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf cython3 armhf 0.29.28-3+rpi1 [1456 kB]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.7 [195 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.7-3 [526 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:42 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:43 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB]
Get:44 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.0-1 [15.8 kB]
Get:45 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.186-1 [174 kB]
Get:46 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:47 http://172.17.4.1/private bookworm-staging/main armhf libicu67 armhf 67.1-7 [8291 kB]
Get:48 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.13+dfsg-1 [593 kB]
Get:49 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-6 [1214 kB]
Get:50 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:51 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:52 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.7 [1070 kB]
Get:53 http://172.17.4.1/private bookworm-staging/main armhf python3-lib2to3 all 3.9.12-1 [79.9 kB]
Get:54 http://172.17.4.1/private bookworm-staging/main armhf python3-distutils all 3.9.12-1 [146 kB]
Get:55 http://172.17.4.1/private bookworm-staging/main armhf dh-python all 5.20220403 [113 kB]
Get:56 http://172.17.4.1/private bookworm-staging/main armhf gcc-12-base armhf 12-20220319-1+rpi1 [207 kB]
Get:57 http://172.17.4.1/private bookworm-staging/main armhf help2man armhf 1.49.2 [202 kB]
Get:58 http://172.17.4.1/private bookworm-staging/main armhf libblas3 armhf 3.10.0-2 [109 kB]
Get:59 http://172.17.4.1/private bookworm-staging/main armhf libexpat1-dev armhf 2.4.8-1 [137 kB]
Get:60 http://172.17.4.1/private bookworm-staging/main armhf libgfortran5 armhf 12-20220319-1+rpi1 [238 kB]
Get:61 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery all 3.6.0+dfsg+~3.5.13-1 [316 kB]
Get:62 http://172.17.4.1/private bookworm-staging/main armhf libjs-underscore all 1.13.2~dfsg-2 [116 kB]
Get:63 http://172.17.4.1/private bookworm-staging/main armhf libjs-sphinxdoc all 4.5.0-3 [142 kB]
Get:64 http://172.17.4.1/private bookworm-staging/main armhf liblapack3 armhf 3.10.0-2 [1590 kB]
Get:65 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10 armhf 3.10.4-1 [1454 kB]
Get:66 http://172.17.4.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-4 [183 kB]
Get:67 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10-dev armhf 3.10.4-1 [2984 kB]
Get:68 http://172.17.4.1/private bookworm-staging/main armhf libpython3-dev armhf 3.10.4-1 [22.0 kB]
Get:69 http://172.17.4.1/private bookworm-staging/main armhf libpython3.9-stdlib armhf 3.9.12-1+rpi1 [1611 kB]
Get:70 http://172.17.4.1/private bookworm-staging/main armhf libpython3.9 armhf 3.9.12-1+rpi1 [1419 kB]
Get:71 http://172.17.4.1/private bookworm-staging/main armhf libpython3.9-dev armhf 3.9.12-1+rpi1 [3013 kB]
Get:72 http://172.17.4.1/private bookworm-staging/main armhf libpython3-all-dev armhf 3.10.4-1 [1072 B]
Get:73 http://172.17.4.1/private bookworm-staging/main armhf python3.9 armhf 3.9.12-1+rpi1 [492 kB]
Get:74 http://172.17.4.1/private bookworm-staging/main armhf python3-all armhf 3.10.4-1 [1064 B]
Get:75 http://172.17.4.1/private bookworm-staging/main armhf python3.10-dev armhf 3.10.4-1 [508 kB]
Get:76 http://172.17.4.1/private bookworm-staging/main armhf python3-dev armhf 3.10.4-1 [25.4 kB]
Get:77 http://172.17.4.1/private bookworm-staging/main armhf python3.9-dev armhf 3.9.12-1+rpi1 [501 kB]
Get:78 http://172.17.4.1/private bookworm-staging/main armhf python3-all-dev armhf 3.10.4-1 [1076 B]
Get:79 http://172.17.4.1/private bookworm-staging/main armhf python3-attr all 21.2.0-1 [57.5 kB]
Get:80 http://172.17.4.1/private bookworm-staging/main armhf python3-iniconfig all 1.1.1-2 [6396 B]
Get:81 http://172.17.4.1/private bookworm-staging/main armhf python3-more-itertools all 8.10.0-2 [53.0 kB]
Get:82 http://172.17.4.1/private bookworm-staging/main armhf python3-pkg-resources all 59.6.0-1.2 [196 kB]
Get:83 http://172.17.4.1/private bookworm-staging/main armhf python3-numpy armhf 1:1.21.5-1+b1 [5157 kB]
Get:84 http://172.17.4.1/private bookworm-staging/main armhf python3-pyparsing all 3.0.7-2 [140 kB]
Get:85 http://172.17.4.1/private bookworm-staging/main armhf python3-packaging all 21.3-1 [34.1 kB]
Get:86 http://172.17.4.1/private bookworm-staging/main armhf python3-setuptools all 59.6.0-1.2 [401 kB]
Get:87 http://172.17.4.1/private bookworm-staging/main armhf python3-wheel all 0.37.1-2 [31.6 kB]
Get:88 http://172.17.4.1/private bookworm-staging/main armhf python3-pip all 22.0.2+dfsg-1 [1309 kB]
Get:89 http://172.17.4.1/private bookworm-staging/main armhf python3-pluggy all 1.0.0-1 [19.6 kB]
Get:90 http://172.17.4.1/private bookworm-staging/main armhf python3-py all 1.10.0-1 [94.2 kB]
Get:91 http://172.17.4.1/private bookworm-staging/main armhf python3-toml all 0.10.2-1 [16.2 kB]
Get:92 http://172.17.4.1/private bookworm-staging/main armhf python3-pytest all 6.2.5-2 [218 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 51.5 MB in 5s (9515 kB/s)
Selecting previously unselected package liblocale-gettext-perl.
(Reading database ... 12608 files and directories currently installed.)
Preparing to unpack .../liblocale-gettext-perl_1.07-4+b2_armhf.deb ...
Unpacking liblocale-gettext-perl (1.07-4+b2) ...
Selecting previously unselected package libpython3.10-minimal:armhf.
Preparing to unpack .../libpython3.10-minimal_3.10.4-1_armhf.deb ...
Unpacking libpython3.10-minimal:armhf (3.10.4-1) ...
Selecting previously unselected package libexpat1:armhf.
Preparing to unpack .../libexpat1_2.4.8-1_armhf.deb ...
Unpacking libexpat1:armhf (2.4.8-1) ...
Preparing to unpack .../zlib1g_1%3a1.2.11.dfsg-4_armhf.deb ...
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Setting up zlib1g:armhf (1:1.2.11.dfsg-4) ...
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
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Updating certificates in /etc/ssl/certs...
127 added, 0 removed; done.
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Setting up libjs-sphinxdoc (4.5.0-3) ...
Setting up autoconf (2.71-2) ...
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Setting up dwz (0.14-1) ...
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update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
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Not building database; man-db/auto-update is not 'true'.
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Setting up python3-pkg-resources (59.6.0-1.2) ...
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Setting up python3-dev (3.10.4-1) ...
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Setting up python3-numpy (1:1.21.5-1+b1) ...
Setting up python3-all-dev (3.10.4-1) ...
Setting up python3-pytest (6.2.5-2) ...
Setting up sbuild-build-depends-macs-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.33-7+rpi1) ...
Processing triggers for ca-certificates (20211016) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-163-generic armhf (armv8l)
Toolchain package versions: binutils_2.38-3+rpi1 dpkg-dev_1.21.2+rpi1 g++-11_11.2.0-16+rpi1 gcc-11_11.2.0-16+rpi1 libc6-dev_2.33-7+rpi1 libstdc++-11-dev_11.2.0-16+rpi1 libstdc++6_11.2.0-16+rpi1 linux-libc-dev_5.16.14-1+rpi1
Package versions: adduser_3.120 apt_2.4.3 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-6 autotools-dev_20220109.1 base-files_12.2+rpi1 base-passwd_3.5.52 bash_5.1-6 binutils_2.38-3+rpi1 binutils-arm-linux-gnueabihf_2.38-3+rpi1 binutils-common_2.38-3+rpi1 bsdextrautils_2.38-4 bsdutils_1:2.37.3-1 build-essential_12.9 bzip2_1.0.8-5 ca-certificates_20211016 coreutils_8.32-4.1 cpp_4:11.2.0-2+rpi1 cpp-11_11.2.0-16+rpi1 cython3_0.29.28-3+rpi1 dash_0.5.11+git20210903+057cd650a4ed-8 debconf_1.5.79 debhelper_13.7 debianutils_5.7-0.1 dh-autoreconf_20 dh-python_5.20220403 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.7-5 dirmngr_2.2.27-3+b1 dpkg_1.21.2+rpi1 dpkg-dev_1.21.2+rpi1 dwz_0.14-1 e2fsprogs_1.46.5-2 fakeroot_1.28-1 file_1:5.41-2 findutils_4.9.0-2 g++_4:11.2.0-2+rpi1 g++-11_11.2.0-16+rpi1 gcc_4:11.2.0-2+rpi1 gcc-11_11.2.0-16+rpi1 gcc-11-base_11.2.0-16+rpi1 gcc-12-base_12-20220319-1+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-6 gettext-base_0.21-6 gnupg_2.2.27-3 gnupg-l10n_2.2.27-3 gnupg-utils_2.2.27-3+b1 gpg_2.2.27-3+b1 gpg-agent_2.2.27-3+b1 gpg-wks-client_2.2.27-3+b1 gpg-wks-server_2.2.27-3+b1 gpgconf_2.2.27-3+b1 gpgsm_2.2.27-3+b1 gpgv_2.2.27-3+b1 grep_3.7-1 groff-base_1.22.4-8 gzip_1.10-4 help2man_1.49.2 hostname_3.23 init-system-helpers_1.62 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libapt-pkg6.0_2.4.3 libarchive-zip-perl_1.68-1 libasan6_11.2.0-16+rpi1 libassuan0_2.5.5-1 libatomic1_11.2.0-16+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.7-1 libaudit1_1:3.0.7-1+b1 libbinutils_2.38-3+rpi1 libblas3_3.10.0-2 libblkid1_2.37.3-1 libbz2-1.0_1.0.8-5 libc-bin_2.33-7+rpi1 libc-dev-bin_2.33-7+rpi1 libc6_2.33-7+rpi1 libc6-dev_2.33-7+rpi1 libcap-ng0_0.7.9-2.2+b1 libcap2_1:2.44-1 libcc1-0_11.2.0-16+rpi1 libcom-err2_1.46.5-2 libcrypt-dev_1:4.4.27-1.1 libcrypt1_1:4.4.27-1.1 libctf-nobfd0_2.38-3+rpi1 libctf0_2.38-3+rpi1 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.261 libdebhelper-perl_13.7 libdpkg-perl_1.21.2+rpi1 libelf1_0.186-1 libexpat1_2.4.8-1 libexpat1-dev_2.4.8-1 libext2fs2_1.46.5-2 libfakeroot_1.28-1 libffi8_3.4.2-4 libfile-stripnondeterminism-perl_1.13.0-1 libgcc-11-dev_11.2.0-16+rpi1 libgcc-s1_11.2.0-16+rpi1 libgcrypt20_1.9.4-5 libgdbm-compat4_1.23-1 libgdbm6_1.23-1 libgfortran5_12-20220319-1+rpi1 libgmp10_2:6.2.1+dfsg-3 libgnutls30_3.7.3-4 libgomp1_11.2.0-16+rpi1 libgpg-error0_1.43-3 libgssapi-krb5-2_1.19.2-2+b1 libhogweed6_3.7.3-1 libicu67_67.1-7 libidn2-0_2.3.2-2 libisl23_0.24-2 libjs-jquery_3.6.0+dfsg+~3.5.13-1 libjs-sphinxdoc_4.5.0-3 libjs-underscore_1.13.2~dfsg-2 libk5crypto3_1.19.2-2+b1 libkeyutils1_1.6.1-3+rpi1 libkrb5-3_1.19.2-2+b1 libkrb5support0_1.19.2-2+b1 libksba8_1.6.0-2 liblapack3_3.10.0-2 libldap-2.5-0_2.5.11+dfsg-1+rpi1 liblocale-gettext-perl_1.07-4+b2 liblz4-1_1.9.3-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.41-2 libmagic1_1:5.41-2 libmount1_2.37.3-1 libmpc3_1.2.1-1 libmpdec3_2.5.1-2+rpi1 libmpfr6_4.1.0-3 libncurses6_6.3-2 libncursesw6_6.3-2 libnettle8_3.7.3-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.0-6 libpam-modules_1.4.0-11 libpam-modules-bin_1.4.0-11 libpam-runtime_1.4.0-11 libpam0g_1.4.0-11 libpcre2-8-0_10.39-3 libpcre3_2:8.39-13 libperl5.34_5.34.0-3 libpipeline1_1.5.5-1 libprocps8_2:3.3.17-7 libpython3-all-dev_3.10.4-1 libpython3-dev_3.10.4-1 libpython3-stdlib_3.10.4-1 libpython3.10_3.10.4-1 libpython3.10-dev_3.10.4-1 libpython3.10-minimal_3.10.4-1 libpython3.10-stdlib_3.10.4-1 libpython3.9_3.9.12-1+rpi1 libpython3.9-dev_3.9.12-1+rpi1 libpython3.9-minimal_3.9.12-1+rpi1 libpython3.9-stdlib_3.9.12-1+rpi1 libreadline8_8.1.2-1 libsasl2-2_2.1.28+dfsg-2+b1 libsasl2-modules-db_2.1.28+dfsg-2+b1 libseccomp2_2.5.3-2+rpi1 libselinux1_3.3-1 libsemanage-common_3.3-1 libsemanage2_3.3-1 libsepol1_3.1-1 libsepol2_3.3-1 libsigsegv2_2.14-1 libsmartcols1_2.38-4 libsqlite3-0_3.38.1-1 libss2_1.46.5-2 libssl1.1_1.1.1n-1 libstdc++-11-dev_11.2.0-16+rpi1 libstdc++6_11.2.0-16+rpi1 libsub-override-perl_0.09-2 libsystemd0_250.4-1+rpi1 libtasn1-6_4.18.0-4 libtinfo6_6.3-2 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.7-3 libubsan1_11.2.0-16+rpi1 libuchardet0_0.0.7-1 libudev1_250.4-1+rpi1 libunistring2_1.0-1 libuuid1_2.37.3-1 libxml2_2.9.13+dfsg-1 libxxhash0_0.8.1-1 libzstd1_1.4.9+dfsg-1+rpi1 linux-libc-dev_5.16.14-1+rpi1 login_1:4.11.1+dfsg1-2 logsave_1.46.5-2 lsb-base_11.1.0+rpi1 m4_1.4.18-5 make_4.3-4.1 man-db_2.10.2-1 mawk_1.3.4.20200120-3 media-types_7.1.0 mount_2.37.3-1 ncurses-base_6.3-2 ncurses-bin_6.3-2 netbase_6.3 openssl_1.1.1n-1 passwd_1:4.11.1+dfsg1-2 patch_2.7.6-7 perl_5.34.0-3 perl-base_5.34.0-3 perl-modules-5.34_5.34.0-3 pinentry-curses_1.1.0-4 po-debconf_1.0.21+nmu1 procps_2:3.3.17-7 python3_3.10.4-1 python3-all_3.10.4-1 python3-all-dev_3.10.4-1 python3-attr_21.2.0-1 python3-dev_3.10.4-1 python3-distutils_3.9.12-1 python3-iniconfig_1.1.1-2 python3-lib2to3_3.9.12-1 python3-minimal_3.10.4-1 python3-more-itertools_8.10.0-2 python3-numpy_1:1.21.5-1+b1 python3-packaging_21.3-1 python3-pip_22.0.2+dfsg-1 python3-pkg-resources_59.6.0-1.2 python3-pluggy_1.0.0-1 python3-py_1.10.0-1 python3-pyparsing_3.0.7-2 python3-pytest_6.2.5-2 python3-setuptools_59.6.0-1.2 python3-toml_0.10.2-1 python3-wheel_0.37.1-2 python3.10_3.10.4-1 python3.10-dev_3.10.4-1 python3.10-minimal_3.10.4-1 python3.9_3.9.12-1+rpi1 python3.9-dev_3.9.12-1+rpi1 python3.9-minimal_3.9.12-1+rpi1 raspbian-archive-keyring_20120528.2 readline-common_8.1.2-1 rpcsvc-proto_1.4.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-macs-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.01-1 tar_1.34+dfsg-1 tzdata_2021e-1 util-linux_2.37.3-1 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-4 zlib1g-dev_1:1.2.11.dfsg-4
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.WIgfONlR/trustedkeys.kbx': General error
gpgv: Signature made Mon Nov 8 13:47:12 2021 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify signature ./macs_2.2.7.1-5.dsc
dpkg-source: info: extracting macs in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking macs_2.2.7.1.orig.tar.gz
dpkg-source: info: unpacking macs_2.2.7.1-5.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying spelling
dpkg-source: info: applying keep_debug
dpkg-source: info: applying link-libm.patch
dpkg-source: info: applying no-pip.patch
dpkg-source: info: applying enable_python3.10.patch
Check disk space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 2.2.7.1-5+b1
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-b818d298-5ad5-4b21-b744-d3c2a4ffcc4f
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package macs
dpkg-buildpackage: info: source version 2.2.7.1-5+b1
dpkg-buildpackage: info: source distribution bookworm-staging
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
dpkg-source: info: using options from macs-2.2.7.1/debian/source/options: --extend-diff-ignore=(^|/)(.*\.c)$|.*[.]egg-info/
debian/rules clean
dh clean --with python3 --buildsystem=pybuild
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean || true
I: pybuild base:239: python3.9 setup.py clean
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.9' does not exist -- can't clean it
I: pybuild base:239: python3.10 setup.py clean
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.10' does not exist -- can't clean it
rm -Rf test/macs2.2.7.1-5+b1* test/speedtest*
rm -f debian/*.1 debian/*-man-include
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary-arch
dh binary-arch --with python3 --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:239: python3.9 setup.py config
running config
I: pybuild base:239: python3.10 setup.py config
running config
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
for pyx in $(find MACS2/ -name "*.pyx"); do \
rm -f ${pyx%%.pyx}.{h,c}; touch ${pyx}; done
dh_auto_build
I: pybuild base:239: /usr/bin/python3.9 setup.py build
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2
copying MACS2/Constants.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2
copying MACS2/OptValidator.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2
copying MACS2/OutputWriter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2
copying MACS2/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2
copying MACS2/bdgbroadcall_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2
copying MACS2/bdgcmp_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2
copying MACS2/bdgdiff_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2
copying MACS2/bdgopt_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2
copying MACS2/bdgpeakcall_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2
copying MACS2/callpeak_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2
copying MACS2/cmbreps_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2
copying MACS2/diffpeak_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2
copying MACS2/filterdup_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2
copying MACS2/pileup_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2
copying MACS2/predictd_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2
copying MACS2/randsample_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2
copying MACS2/refinepeak_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO
copying MACS2/IO/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO
copying MACS2/cPosValCalculation.pxd -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2
copying MACS2/khash.pxd -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2
running build_ext
cythoning MACS2/Prob.pyx to MACS2/Prob.c
cythoning MACS2/IO/Parser.pyx to MACS2/IO/Parser.c
cythoning MACS2/Pileup.pyx to MACS2/Pileup.c
cythoning MACS2/PeakModel.pyx to MACS2/PeakModel.c
cythoning MACS2/PeakDetect.pyx to MACS2/PeakDetect.c
cythoning MACS2/Signal.pyx to MACS2/Signal.c
cythoning MACS2/IO/PeakIO.pyx to MACS2/IO/PeakIO.c
cythoning MACS2/IO/BedGraphIO.pyx to MACS2/IO/BedGraphIO.c
cythoning MACS2/IO/FixWidthTrack.pyx to MACS2/IO/FixWidthTrack.c
cythoning MACS2/IO/PairedEndTrack.pyx to MACS2/IO/PairedEndTrack.c
cythoning MACS2/IO/BedGraph.pyx to MACS2/IO/BedGraph.c
cythoning MACS2/IO/ScoreTrack.pyx to MACS2/IO/ScoreTrack.c
cythoning MACS2/IO/CallPeakUnit.pyx to MACS2/IO/CallPeakUnit.c
building 'MACS2.Prob' extension
creating build
creating build/temp.linux-armhf-3.9
creating build/temp.linux-armhf-3.9/MACS2
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c MACS2/Prob.c -o build/temp.linux-armhf-3.9/MACS2/Prob.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/MACS2/Prob.o -lm -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2/Prob.cpython-39-arm-linux-gnueabihf.so
building 'MACS2.IO.Parser' extension
creating build/temp.linux-armhf-3.9/MACS2/IO
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c MACS2/IO/Parser.c -o build/temp.linux-armhf-3.9/MACS2/IO/Parser.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/MACS2/IO/Parser.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/Parser.cpython-39-arm-linux-gnueabihf.so
building 'MACS2.Pileup' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c MACS2/Pileup.c -o build/temp.linux-armhf-3.9/MACS2/Pileup.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c MACS2/cPosValCalculation.c -o build/temp.linux-armhf-3.9/MACS2/cPosValCalculation.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/MACS2/Pileup.o build/temp.linux-armhf-3.9/MACS2/cPosValCalculation.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2/Pileup.cpython-39-arm-linux-gnueabihf.so
building 'MACS2.PeakModel' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c MACS2/PeakModel.c -o build/temp.linux-armhf-3.9/MACS2/PeakModel.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/MACS2/PeakModel.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2/PeakModel.cpython-39-arm-linux-gnueabihf.so
building 'MACS2.PeakDetect' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c MACS2/PeakDetect.c -o build/temp.linux-armhf-3.9/MACS2/PeakDetect.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/MACS2/PeakDetect.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2/PeakDetect.cpython-39-arm-linux-gnueabihf.so
building 'MACS2.Signal' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c MACS2/Signal.c -o build/temp.linux-armhf-3.9/MACS2/Signal.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/MACS2/Signal.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2/Signal.cpython-39-arm-linux-gnueabihf.so
building 'MACS2.IO.PeakIO' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c MACS2/IO/PeakIO.c -o build/temp.linux-armhf-3.9/MACS2/IO/PeakIO.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/MACS2/IO/PeakIO.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/PeakIO.cpython-39-arm-linux-gnueabihf.so
building 'MACS2.IO.BedGraphIO' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c MACS2/IO/BedGraphIO.c -o build/temp.linux-armhf-3.9/MACS2/IO/BedGraphIO.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/MACS2/IO/BedGraphIO.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/BedGraphIO.cpython-39-arm-linux-gnueabihf.so
building 'MACS2.IO.FixWidthTrack' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c MACS2/IO/FixWidthTrack.c -o build/temp.linux-armhf-3.9/MACS2/IO/FixWidthTrack.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/MACS2/IO/FixWidthTrack.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/FixWidthTrack.cpython-39-arm-linux-gnueabihf.so
building 'MACS2.IO.PairedEndTrack' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c MACS2/IO/PairedEndTrack.c -o build/temp.linux-armhf-3.9/MACS2/IO/PairedEndTrack.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/MACS2/IO/PairedEndTrack.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/PairedEndTrack.cpython-39-arm-linux-gnueabihf.so
building 'MACS2.IO.BedGraph' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c MACS2/IO/BedGraph.c -o build/temp.linux-armhf-3.9/MACS2/IO/BedGraph.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/MACS2/IO/BedGraph.o -lm -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/BedGraph.cpython-39-arm-linux-gnueabihf.so
building 'MACS2.IO.ScoreTrack' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c MACS2/IO/ScoreTrack.c -o build/temp.linux-armhf-3.9/MACS2/IO/ScoreTrack.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/MACS2/IO/ScoreTrack.o -lm -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/ScoreTrack.cpython-39-arm-linux-gnueabihf.so
building 'MACS2.IO.CallPeakUnit' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c MACS2/IO/CallPeakUnit.c -o build/temp.linux-armhf-3.9/MACS2/IO/CallPeakUnit.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/MACS2/IO/CallPeakUnit.o -lm -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/CallPeakUnit.cpython-39-arm-linux-gnueabihf.so
running build_scripts
creating build/scripts-3.9
copying and adjusting bin/macs2 -> build/scripts-3.9
changing mode of build/scripts-3.9/macs2 from 644 to 755
I: pybuild base:239: /usr/bin/python3 setup.py build
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2
copying MACS2/Constants.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2
copying MACS2/OptValidator.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2
copying MACS2/OutputWriter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2
copying MACS2/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2
copying MACS2/bdgbroadcall_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2
copying MACS2/bdgcmp_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2
copying MACS2/bdgdiff_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2
copying MACS2/bdgopt_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2
copying MACS2/bdgpeakcall_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2
copying MACS2/callpeak_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2
copying MACS2/cmbreps_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2
copying MACS2/diffpeak_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2
copying MACS2/filterdup_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2
copying MACS2/pileup_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2
copying MACS2/predictd_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2
copying MACS2/randsample_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2
copying MACS2/refinepeak_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2/IO
copying MACS2/IO/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2/IO
copying MACS2/cPosValCalculation.pxd -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2
copying MACS2/khash.pxd -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2
running build_ext
skipping 'MACS2/Prob.c' Cython extension (up-to-date)
skipping 'MACS2/IO/Parser.c' Cython extension (up-to-date)
skipping 'MACS2/Pileup.c' Cython extension (up-to-date)
skipping 'MACS2/PeakModel.c' Cython extension (up-to-date)
skipping 'MACS2/PeakDetect.c' Cython extension (up-to-date)
skipping 'MACS2/Signal.c' Cython extension (up-to-date)
skipping 'MACS2/IO/PeakIO.c' Cython extension (up-to-date)
skipping 'MACS2/IO/BedGraphIO.c' Cython extension (up-to-date)
skipping 'MACS2/IO/FixWidthTrack.c' Cython extension (up-to-date)
skipping 'MACS2/IO/PairedEndTrack.c' Cython extension (up-to-date)
skipping 'MACS2/IO/BedGraph.c' Cython extension (up-to-date)
skipping 'MACS2/IO/ScoreTrack.c' Cython extension (up-to-date)
skipping 'MACS2/IO/CallPeakUnit.c' Cython extension (up-to-date)
building 'MACS2.Prob' extension
creating build/temp.linux-armhf-3.10
creating build/temp.linux-armhf-3.10/MACS2
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.10 -c MACS2/Prob.c -o build/temp.linux-armhf-3.10/MACS2/Prob.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.10/MACS2/Prob.o -lm -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2/Prob.cpython-310-arm-linux-gnueabihf.so
building 'MACS2.IO.Parser' extension
creating build/temp.linux-armhf-3.10/MACS2/IO
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.10 -c MACS2/IO/Parser.c -o build/temp.linux-armhf-3.10/MACS2/IO/Parser.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.10/MACS2/IO/Parser.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2/IO/Parser.cpython-310-arm-linux-gnueabihf.so
building 'MACS2.Pileup' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.10 -c MACS2/Pileup.c -o build/temp.linux-armhf-3.10/MACS2/Pileup.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.10 -c MACS2/cPosValCalculation.c -o build/temp.linux-armhf-3.10/MACS2/cPosValCalculation.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.10/MACS2/Pileup.o build/temp.linux-armhf-3.10/MACS2/cPosValCalculation.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2/Pileup.cpython-310-arm-linux-gnueabihf.so
building 'MACS2.PeakModel' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.10 -c MACS2/PeakModel.c -o build/temp.linux-armhf-3.10/MACS2/PeakModel.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.10/MACS2/PeakModel.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2/PeakModel.cpython-310-arm-linux-gnueabihf.so
building 'MACS2.PeakDetect' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.10 -c MACS2/PeakDetect.c -o build/temp.linux-armhf-3.10/MACS2/PeakDetect.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.10/MACS2/PeakDetect.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2/PeakDetect.cpython-310-arm-linux-gnueabihf.so
building 'MACS2.Signal' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.10 -c MACS2/Signal.c -o build/temp.linux-armhf-3.10/MACS2/Signal.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.10/MACS2/Signal.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2/Signal.cpython-310-arm-linux-gnueabihf.so
building 'MACS2.IO.PeakIO' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.10 -c MACS2/IO/PeakIO.c -o build/temp.linux-armhf-3.10/MACS2/IO/PeakIO.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.10/MACS2/IO/PeakIO.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2/IO/PeakIO.cpython-310-arm-linux-gnueabihf.so
building 'MACS2.IO.BedGraphIO' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.10 -c MACS2/IO/BedGraphIO.c -o build/temp.linux-armhf-3.10/MACS2/IO/BedGraphIO.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.10/MACS2/IO/BedGraphIO.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2/IO/BedGraphIO.cpython-310-arm-linux-gnueabihf.so
building 'MACS2.IO.FixWidthTrack' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.10 -c MACS2/IO/FixWidthTrack.c -o build/temp.linux-armhf-3.10/MACS2/IO/FixWidthTrack.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.10/MACS2/IO/FixWidthTrack.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2/IO/FixWidthTrack.cpython-310-arm-linux-gnueabihf.so
building 'MACS2.IO.PairedEndTrack' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.10 -c MACS2/IO/PairedEndTrack.c -o build/temp.linux-armhf-3.10/MACS2/IO/PairedEndTrack.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.10/MACS2/IO/PairedEndTrack.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2/IO/PairedEndTrack.cpython-310-arm-linux-gnueabihf.so
building 'MACS2.IO.BedGraph' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.10 -c MACS2/IO/BedGraph.c -o build/temp.linux-armhf-3.10/MACS2/IO/BedGraph.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.10/MACS2/IO/BedGraph.o -lm -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2/IO/BedGraph.cpython-310-arm-linux-gnueabihf.so
building 'MACS2.IO.ScoreTrack' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.10 -c MACS2/IO/ScoreTrack.c -o build/temp.linux-armhf-3.10/MACS2/IO/ScoreTrack.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.10/MACS2/IO/ScoreTrack.o -lm -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2/IO/ScoreTrack.cpython-310-arm-linux-gnueabihf.so
building 'MACS2.IO.CallPeakUnit' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.10 -c MACS2/IO/CallPeakUnit.c -o build/temp.linux-armhf-3.10/MACS2/IO/CallPeakUnit.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.10/MACS2/IO/CallPeakUnit.o -lm -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2/IO/CallPeakUnit.cpython-310-arm-linux-gnueabihf.so
running build_scripts
creating build/scripts-3.10
copying and adjusting bin/macs2 -> build/scripts-3.10
changing mode of build/scripts-3.10/macs2 from 644 to 755
PYTHONPATH=./.pybuild/cpython3_$(py3versions -v -d)_MACS2/build/ help2man \
--no-discard-stderr --no-info \
--name "macs2 \- Model\-based Analysis for ChIP\-Sequencing" "python3 bin/macs2" > debian/macs2.1
for subcommand in callpeak bdgpeakcall bdgbroadcall bdgcmp bdgopt cmbreps bdgdiff filterdup predictd pileup randsample refinepeak; do printf \
"[NAME]\nmacs2_${subcommand} \- Model\-based Analysis for ChIP\-Sequencing\n" \
> debian/macs2_${subcommand}-man-include; done
for subcommand in callpeak bdgpeakcall bdgbroadcall bdgcmp bdgopt cmbreps bdgdiff filterdup predictd pileup randsample refinepeak; do \
PYTHONPATH=./.pybuild/cpython3_$(py3versions -v -d)_MACS2/build/ help2man \
--no-discard-stderr --no-info --version-string="2.2.7.1" \
--include debian/macs2_${subcommand}-man-include \
"python3 bin/macs2 ${subcommand}" > \
debian/macs2_${subcommand}.1; done
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_test
I: pybuild base:239: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build; python3.9 -m pytest test
============================= test session starts ==============================
platform linux -- Python 3.9.12, pytest-6.2.5, py-1.10.0, pluggy-1.0.0
rootdir: /<<PKGBUILDDIR>>
collected 42 items
test/test_BedGraph.py .... [ 9%]
test/test_FixWidthTrack.py .... [ 19%]
test/test_PairedEndTrack.py .... [ 28%]
test/test_Parser.py ... [ 35%]
test/test_PeakIO.py ... [ 42%]
test/test_Pileup.py .. [ 47%]
test/test_Prob.py ................ [ 85%]
test/test_ScoreTrack.py .... [ 95%]
test/test_Signal.py s. [100%]
======================== 41 passed, 1 skipped in 1.78s =========================
I: pybuild base:239: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build; python3.10 -m pytest test
============================= test session starts ==============================
platform linux -- Python 3.10.4, pytest-6.2.5, py-1.10.0, pluggy-1.0.0
rootdir: /<<PKGBUILDDIR>>
collected 42 items
test/test_BedGraph.py .... [ 9%]
test/test_FixWidthTrack.py .... [ 19%]
test/test_PairedEndTrack.py .... [ 28%]
test/test_Parser.py ... [ 35%]
test/test_PeakIO.py ... [ 42%]
test/test_Pileup.py .. [ 47%]
test/test_Prob.py ................ [ 85%]
test/test_ScoreTrack.py .... [ 95%]
test/test_Signal.py s. [100%]
======================== 41 passed, 1 skipped in 2.34s =========================
cd test && for PY3VER in 3.9 3.10; do \
export PATH=/<<PKGBUILDDIR>>/build/scripts-${PY3VER}:$PATH \
&& export PYTHONPATH=/<<PKGBUILDDIR>>/.pybuild/cpython3_${PY3VER}_MACS2/build \
&& ./cmdlinetest macs2.2.7.1-5+b1-${PY3VER} ; done
1. callpeak
1.1 callpeak narrow
1.2 callpeak broad
1.3 callpeak on PE narrow/broad
2. pileup
3. filterdup
4. predictd
5. randsample
6. refinepeak
7. bdgcmp
8. bdgpeakcall
9. bdgbroadcall
10. bdgdiff
11. cmbreps
12. bdgopt
13. 50k contigs with buffersize
13.1 callpeak
13.2 filterdup
13.3 pileup
13.4 randsample
14. search for errors or warnings in log files
checking macs2.2.7.1-5+b1-3.9_run_50kcontigs/run_callpeak_50kcontigs.log...
... clear!
checking macs2.2.7.1-5+b1-3.9_run_50kcontigs/run_filterdup_50kcontigs.log...
... clear!
checking macs2.2.7.1-5+b1-3.9_run_50kcontigs/run_pileup_ChIP.bed.log...
... clear!
checking macs2.2.7.1-5+b1-3.9_run_50kcontigs/run_randsample.log...
... clear!
checking macs2.2.7.1-5+b1-3.9_run_bdgbroadcall/run_bdgbroadcall_w_prefix.log...
... clear!
checking macs2.2.7.1-5+b1-3.9_run_bdgcmp/run_bdgcmp.log...
... clear!
checking macs2.2.7.1-5+b1-3.9_run_bdgdiff/run_bdgdiff_w_o_file.log...
... clear!
checking macs2.2.7.1-5+b1-3.9_run_bdgdiff/run_bdgdiff_w_prefix.log...
... clear!
checking macs2.2.7.1-5+b1-3.9_run_bdgopt/run_bdgopt_max.log...
... clear!
checking macs2.2.7.1-5+b1-3.9_run_bdgopt/run_bdgopt_min.log...
... clear!
checking macs2.2.7.1-5+b1-3.9_run_bdgpeakcall/run_bdgpeakcall_cutoff.log...
... clear!
checking macs2.2.7.1-5+b1-3.9_run_bdgpeakcall/run_bdgpeakcall_w_prefix.log...
... clear!
checking macs2.2.7.1-5+b1-3.9_run_callpeak_broad/run_callpeak_broad.log...
... clear!
checking macs2.2.7.1-5+b1-3.9_run_callpeak_narrow/run_callpeak_narrow0.log...
... clear!
checking macs2.2.7.1-5+b1-3.9_run_callpeak_narrow/run_callpeak_narrow1.log...
... clear!
checking macs2.2.7.1-5+b1-3.9_run_callpeak_narrow/run_callpeak_narrow2.log...
... clear!
checking macs2.2.7.1-5+b1-3.9_run_callpeak_narrow/run_callpeak_narrow3.log...
... clear!
checking macs2.2.7.1-5+b1-3.9_run_callpeak_narrow/run_callpeak_narrow4.log...
... clear!
checking macs2.2.7.1-5+b1-3.9_run_callpeak_narrow/run_callpeak_narrow5.log...
... clear!
checking macs2.2.7.1-5+b1-3.9_run_callpeak_narrow_revert/run_callpeak_narrow_revert.log...
... clear!
checking macs2.2.7.1-5+b1-3.9_run_callpeak_pe_broad/run_callpeak_bampe_broad.log...
... clear!
checking macs2.2.7.1-5+b1-3.9_run_callpeak_pe_broad/run_callpeak_bedpe_broad.log...
... clear!
checking macs2.2.7.1-5+b1-3.9_run_callpeak_pe_narrow/run_callpeak_bampe_narrow.log...
... clear!
checking macs2.2.7.1-5+b1-3.9_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow.log...
... clear!
checking macs2.2.7.1-5+b1-3.9_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip.log...
... clear!
checking macs2.2.7.1-5+b1-3.9_run_cmbreps/run_cmbreps_fisher.log...
... clear!
checking macs2.2.7.1-5+b1-3.9_run_cmbreps/run_cmbreps_max.log...
... clear!
checking macs2.2.7.1-5+b1-3.9_run_cmbreps/run_cmbreps_mean.log...
... clear!
checking macs2.2.7.1-5+b1-3.9_run_filterdup/run_filterdup.log...
... clear!
checking macs2.2.7.1-5+b1-3.9_run_filterdup/run_filterdup_d.log...
... clear!
checking macs2.2.7.1-5+b1-3.9_run_filterdup/run_filterdup_pe.log...
... clear!
checking macs2.2.7.1-5+b1-3.9_run_filterdup/run_filterdup_pe_d.log...
... clear!
checking macs2.2.7.1-5+b1-3.9_run_pileup/run_pileup_CTRL.bed.log...
... clear!
checking macs2.2.7.1-5+b1-3.9_run_pileup/run_pileup_CTRLPE.bampe.log...
... clear!
checking macs2.2.7.1-5+b1-3.9_run_pileup/run_pileup_CTRLPE.bedpe.log...
... clear!
checking macs2.2.7.1-5+b1-3.9_run_pileup/run_pileup_ChIP.bed.log...
... clear!
checking macs2.2.7.1-5+b1-3.9_run_pileup/run_pileup_ChIPPE.bampe.log...
... clear!
checking macs2.2.7.1-5+b1-3.9_run_pileup/run_pileup_ChIPPE.bedpe.log...
... clear!
checking macs2.2.7.1-5+b1-3.9_run_predictd/run_predictd.log...
... clear!
checking macs2.2.7.1-5+b1-3.9_run_randsample/run_randsample.log...
... clear!
checking macs2.2.7.1-5+b1-3.9_run_randsample/run_randsample_bampe.log...
... clear!
checking macs2.2.7.1-5+b1-3.9_run_randsample/run_randsample_bedpe.log...
... clear!
checking macs2.2.7.1-5+b1-3.9_run_refinepeak/run_refinepeak_w_ofile.log...
... clear!
checking macs2.2.7.1-5+b1-3.9_run_refinepeak/run_refinepeak_w_prefix.log...
... clear!
15. compare with standard outputs
14.1.1 checking 50kcontigs run_callpeak_50kcontigs_peaks.narrowPeak ...
... success!
14.1.2 checking 50kcontigs run_callpeak_50kcontigs_summits.bed ...
... success!
14.1.3 checking 50kcontigs run_filterdup_result.bed ...
... success!
14.1.4 checking 50kcontigs run_pileup_ChIP.bed.bdg ...
... success!
14.2.1 checking bdgbroadcall run_bdgbroadcall_w_prefix_c2.0_C1.50_l200_g30_G800_broad.bed12 ...
... success!
14.3.1 checking bdgcmp run_bdgcmp_FE.bdg ...
... success!
14.3.2 checking bdgcmp run_bdgcmp_ppois.bdg ...
... success!
14.4.1 checking bdgdiff common.bed ...
... success!
14.4.2 checking bdgdiff cond1.bed ...
... success!
14.4.3 checking bdgdiff cond2.bed ...
... success!
14.4.4 checking bdgdiff run_bdgdiff_prefix_c3.0_common.bed ...
... success!
14.4.5 checking bdgdiff run_bdgdiff_prefix_c3.0_cond1.bed ...
... success!
14.4.6 checking bdgdiff run_bdgdiff_prefix_c3.0_cond2.bed ...
... success!
14.5.1 checking bdgpeakcall run_bdgpeakcall_w_prefix_c2.0_l200_g30_peaks.narrowPeak ...
... success!
14.6.1 checking callpeak_broad run_callpeak_broad_control_lambda.bdg ...
... success!
14.6.2 checking callpeak_broad run_callpeak_broad_peaks.broadPeak ...
... success!
14.6.3 checking callpeak_broad run_callpeak_broad_peaks.gappedPeak ...
... success!
14.6.4 checking callpeak_broad run_callpeak_broad_treat_pileup.bdg ...
... success!
14.7.1 checking callpeak_narrow run_callpeak_narrow0_control_lambda.bdg ...
... success!
14.7.2 checking callpeak_narrow run_callpeak_narrow0_peaks.narrowPeak ...
... success!
14.7.3 checking callpeak_narrow run_callpeak_narrow0_summits.bed ...
... success!
14.7.4 checking callpeak_narrow run_callpeak_narrow0_treat_pileup.bdg ...
... success!
14.7.5 checking callpeak_narrow run_callpeak_narrow1_control_lambda.bdg ...
... success!
14.7.6 checking callpeak_narrow run_callpeak_narrow1_peaks.narrowPeak ...
... success!
14.7.7 checking callpeak_narrow run_callpeak_narrow1_summits.bed ...
... success!
14.7.8 checking callpeak_narrow run_callpeak_narrow1_treat_pileup.bdg ...
... success!
14.7.9 checking callpeak_narrow run_callpeak_narrow2_control_lambda.bdg ...
... success!
14.7.10 checking callpeak_narrow run_callpeak_narrow2_peaks.narrowPeak ...
... success!
14.7.11 checking callpeak_narrow run_callpeak_narrow2_summits.bed ...
... success!
14.7.12 checking callpeak_narrow run_callpeak_narrow2_treat_pileup.bdg ...
... success!
14.7.13 checking callpeak_narrow run_callpeak_narrow3_control_lambda.bdg ...
... success!
14.7.14 checking callpeak_narrow run_callpeak_narrow3_peaks.narrowPeak ...
... success!
14.7.15 checking callpeak_narrow run_callpeak_narrow3_summits.bed ...
... success!
14.7.16 checking callpeak_narrow run_callpeak_narrow3_treat_pileup.bdg ...
... success!
14.7.17 checking callpeak_narrow run_callpeak_narrow4_control_lambda.bdg ...
... success!
14.7.18 checking callpeak_narrow run_callpeak_narrow4_peaks.narrowPeak ...
... success!
14.7.19 checking callpeak_narrow run_callpeak_narrow4_summits.bed ...
... success!
14.7.20 checking callpeak_narrow run_callpeak_narrow4_treat_pileup.bdg ...
... success!
14.7.21 checking callpeak_narrow run_callpeak_narrow5_control_lambda.bdg ...
... success!
14.7.22 checking callpeak_narrow run_callpeak_narrow5_peaks.narrowPeak ...
... success!
14.7.23 checking callpeak_narrow run_callpeak_narrow5_summits.bed ...
... success!
14.7.24 checking callpeak_narrow run_callpeak_narrow5_treat_pileup.bdg ...
... success!
14.8.1 checking callpeak_narrow_revert run_callpeak_narrow_revert_control_lambda.bdg ...
... success!
14.8.2 checking callpeak_narrow_revert run_callpeak_narrow_revert_peaks.narrowPeak ...
... success!
14.8.3 checking callpeak_narrow_revert run_callpeak_narrow_revert_summits.bed ...
... success!
14.8.4 checking callpeak_narrow_revert run_callpeak_narrow_revert_treat_pileup.bdg ...
... success!
14.9.1 checking callpeak_pe_broad run_callpeak_bampe_broad_control_lambda.bdg ...
... success!
14.9.2 checking callpeak_pe_broad run_callpeak_bampe_broad_peaks.broadPeak ...
... success!
14.9.3 checking callpeak_pe_broad run_callpeak_bampe_broad_peaks.gappedPeak ...
... success!
14.9.4 checking callpeak_pe_broad run_callpeak_bampe_broad_treat_pileup.bdg ...
... success!
14.9.5 checking callpeak_pe_broad run_callpeak_bedpe_broad_control_lambda.bdg ...
... success!
14.9.6 checking callpeak_pe_broad run_callpeak_bedpe_broad_peaks.broadPeak ...
... success!
14.9.7 checking callpeak_pe_broad run_callpeak_bedpe_broad_peaks.gappedPeak ...
... success!
14.9.8 checking callpeak_pe_broad run_callpeak_bedpe_broad_treat_pileup.bdg ...
... success!
14.10.1 checking callpeak_pe_narrow run_callpeak_bampe_narrow_control_lambda.bdg ...
... success!
14.10.2 checking callpeak_pe_narrow run_callpeak_bampe_narrow_peaks.narrowPeak ...
... success!
14.10.3 checking callpeak_pe_narrow run_callpeak_bampe_narrow_summits.bed ...
... success!
14.10.4 checking callpeak_pe_narrow run_callpeak_bampe_narrow_treat_pileup.bdg ...
... success!
14.10.5 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_control_lambda.bdg ...
... success!
14.10.6 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_peaks.narrowPeak ...
... success!
14.10.7 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_summits.bed ...
... success!
14.10.8 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_treat_pileup.bdg ...
... success!
14.10.9 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_control_lambda.bdg ...
... success!
14.10.10 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_peaks.narrowPeak ...
... success!
14.10.11 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_summits.bed ...
... success!
14.10.12 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_treat_pileup.bdg ...
... success!
14.11.1 checking cmbreps run_cmbreps_fisher.bdg ...
... success!
14.11.2 checking cmbreps run_cmbreps_max.bdg ...
... success!
14.11.3 checking cmbreps run_cmbreps_mean.bdg ...
... success!
14.12.1 checking filterdup run_filterdup_result.bed ...
... success!
14.12.2 checking filterdup run_filterdup_result_pe.bedpe ...
... success!
14.13.1 checking pileup run_pileup_CTRL.bed.bdg ...
... success!
14.13.2 checking pileup run_pileup_CTRLPE.bampe.bdg ...
... success!
14.13.3 checking pileup run_pileup_CTRLPE.bedpe.bdg ...
... success!
14.13.4 checking pileup run_pileup_ChIP.bed.bdg ...
... success!
14.13.5 checking pileup run_pileup_ChIPPE.bampe.bdg ...
... success!
14.13.6 checking pileup run_pileup_ChIPPE.bedpe.bdg ...
... success!
14.14.1 checking refinepeak run_refinepeak_w_ofile.bed ...
... success!
14.14.2 checking refinepeak run_refinepeak_w_prefix_refinepeak.bed ...
... success!
14.15.1 checking bdgopt run_bdgopt_max.bdg ...
... success!
14.15.2 checking bdgopt run_bdgopt_min.bdg ...
... success!
16. brief speed test
CPU time (mm:ss): 00:03:58
Max mem (KB): 153160
1. callpeak
1.1 callpeak narrow
1.2 callpeak broad
1.3 callpeak on PE narrow/broad
2. pileup
3. filterdup
4. predictd
5. randsample
6. refinepeak
7. bdgcmp
8. bdgpeakcall
9. bdgbroadcall
10. bdgdiff
11. cmbreps
12. bdgopt
13. 50k contigs with buffersize
13.1 callpeak
13.2 filterdup
13.3 pileup
13.4 randsample
14. search for errors or warnings in log files
checking macs2.2.7.1-5+b1-3.10_run_50kcontigs/run_callpeak_50kcontigs.log...
... clear!
checking macs2.2.7.1-5+b1-3.10_run_50kcontigs/run_filterdup_50kcontigs.log...
... clear!
checking macs2.2.7.1-5+b1-3.10_run_50kcontigs/run_pileup_ChIP.bed.log...
... clear!
checking macs2.2.7.1-5+b1-3.10_run_50kcontigs/run_randsample.log...
... clear!
checking macs2.2.7.1-5+b1-3.10_run_bdgbroadcall/run_bdgbroadcall_w_prefix.log...
... clear!
checking macs2.2.7.1-5+b1-3.10_run_bdgcmp/run_bdgcmp.log...
... clear!
checking macs2.2.7.1-5+b1-3.10_run_bdgdiff/run_bdgdiff_w_o_file.log...
... clear!
checking macs2.2.7.1-5+b1-3.10_run_bdgdiff/run_bdgdiff_w_prefix.log...
... clear!
checking macs2.2.7.1-5+b1-3.10_run_bdgopt/run_bdgopt_max.log...
... clear!
checking macs2.2.7.1-5+b1-3.10_run_bdgopt/run_bdgopt_min.log...
... clear!
checking macs2.2.7.1-5+b1-3.10_run_bdgpeakcall/run_bdgpeakcall_cutoff.log...
... clear!
checking macs2.2.7.1-5+b1-3.10_run_bdgpeakcall/run_bdgpeakcall_w_prefix.log...
... clear!
checking macs2.2.7.1-5+b1-3.10_run_callpeak_broad/run_callpeak_broad.log...
... clear!
checking macs2.2.7.1-5+b1-3.10_run_callpeak_narrow/run_callpeak_narrow0.log...
... clear!
checking macs2.2.7.1-5+b1-3.10_run_callpeak_narrow/run_callpeak_narrow1.log...
... clear!
checking macs2.2.7.1-5+b1-3.10_run_callpeak_narrow/run_callpeak_narrow2.log...
... clear!
checking macs2.2.7.1-5+b1-3.10_run_callpeak_narrow/run_callpeak_narrow3.log...
... clear!
checking macs2.2.7.1-5+b1-3.10_run_callpeak_narrow/run_callpeak_narrow4.log...
... clear!
checking macs2.2.7.1-5+b1-3.10_run_callpeak_narrow/run_callpeak_narrow5.log...
... clear!
checking macs2.2.7.1-5+b1-3.10_run_callpeak_narrow_revert/run_callpeak_narrow_revert.log...
... clear!
checking macs2.2.7.1-5+b1-3.10_run_callpeak_pe_broad/run_callpeak_bampe_broad.log...
... clear!
checking macs2.2.7.1-5+b1-3.10_run_callpeak_pe_broad/run_callpeak_bedpe_broad.log...
... clear!
checking macs2.2.7.1-5+b1-3.10_run_callpeak_pe_narrow/run_callpeak_bampe_narrow.log...
... clear!
checking macs2.2.7.1-5+b1-3.10_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow.log...
... clear!
checking macs2.2.7.1-5+b1-3.10_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip.log...
... clear!
checking macs2.2.7.1-5+b1-3.10_run_cmbreps/run_cmbreps_fisher.log...
... clear!
checking macs2.2.7.1-5+b1-3.10_run_cmbreps/run_cmbreps_max.log...
... clear!
checking macs2.2.7.1-5+b1-3.10_run_cmbreps/run_cmbreps_mean.log...
... clear!
checking macs2.2.7.1-5+b1-3.10_run_filterdup/run_filterdup.log...
... clear!
checking macs2.2.7.1-5+b1-3.10_run_filterdup/run_filterdup_d.log...
... clear!
checking macs2.2.7.1-5+b1-3.10_run_filterdup/run_filterdup_pe.log...
... clear!
checking macs2.2.7.1-5+b1-3.10_run_filterdup/run_filterdup_pe_d.log...
... clear!
checking macs2.2.7.1-5+b1-3.10_run_pileup/run_pileup_CTRL.bed.log...
... clear!
checking macs2.2.7.1-5+b1-3.10_run_pileup/run_pileup_CTRLPE.bampe.log...
... clear!
checking macs2.2.7.1-5+b1-3.10_run_pileup/run_pileup_CTRLPE.bedpe.log...
... clear!
checking macs2.2.7.1-5+b1-3.10_run_pileup/run_pileup_ChIP.bed.log...
... clear!
checking macs2.2.7.1-5+b1-3.10_run_pileup/run_pileup_ChIPPE.bampe.log...
... clear!
checking macs2.2.7.1-5+b1-3.10_run_pileup/run_pileup_ChIPPE.bedpe.log...
... clear!
checking macs2.2.7.1-5+b1-3.10_run_predictd/run_predictd.log...
... clear!
checking macs2.2.7.1-5+b1-3.10_run_randsample/run_randsample.log...
... clear!
checking macs2.2.7.1-5+b1-3.10_run_randsample/run_randsample_bampe.log...
... clear!
checking macs2.2.7.1-5+b1-3.10_run_randsample/run_randsample_bedpe.log...
... clear!
checking macs2.2.7.1-5+b1-3.10_run_refinepeak/run_refinepeak_w_ofile.log...
... clear!
checking macs2.2.7.1-5+b1-3.10_run_refinepeak/run_refinepeak_w_prefix.log...
... clear!
15. compare with standard outputs
14.1.1 checking 50kcontigs run_callpeak_50kcontigs_peaks.narrowPeak ...
... success!
14.1.2 checking 50kcontigs run_callpeak_50kcontigs_summits.bed ...
... success!
14.1.3 checking 50kcontigs run_filterdup_result.bed ...
... success!
14.1.4 checking 50kcontigs run_pileup_ChIP.bed.bdg ...
... success!
14.2.1 checking bdgbroadcall run_bdgbroadcall_w_prefix_c2.0_C1.50_l200_g30_G800_broad.bed12 ...
... success!
14.3.1 checking bdgcmp run_bdgcmp_FE.bdg ...
... success!
14.3.2 checking bdgcmp run_bdgcmp_ppois.bdg ...
... success!
14.4.1 checking bdgdiff common.bed ...
... success!
14.4.2 checking bdgdiff cond1.bed ...
... success!
14.4.3 checking bdgdiff cond2.bed ...
... success!
14.4.4 checking bdgdiff run_bdgdiff_prefix_c3.0_common.bed ...
... success!
14.4.5 checking bdgdiff run_bdgdiff_prefix_c3.0_cond1.bed ...
... success!
14.4.6 checking bdgdiff run_bdgdiff_prefix_c3.0_cond2.bed ...
... success!
14.5.1 checking bdgpeakcall run_bdgpeakcall_w_prefix_c2.0_l200_g30_peaks.narrowPeak ...
... success!
14.6.1 checking callpeak_broad run_callpeak_broad_control_lambda.bdg ...
... success!
14.6.2 checking callpeak_broad run_callpeak_broad_peaks.broadPeak ...
... success!
14.6.3 checking callpeak_broad run_callpeak_broad_peaks.gappedPeak ...
... success!
14.6.4 checking callpeak_broad run_callpeak_broad_treat_pileup.bdg ...
... success!
14.7.1 checking callpeak_narrow run_callpeak_narrow0_control_lambda.bdg ...
... success!
14.7.2 checking callpeak_narrow run_callpeak_narrow0_peaks.narrowPeak ...
... success!
14.7.3 checking callpeak_narrow run_callpeak_narrow0_summits.bed ...
... success!
14.7.4 checking callpeak_narrow run_callpeak_narrow0_treat_pileup.bdg ...
... success!
14.7.5 checking callpeak_narrow run_callpeak_narrow1_control_lambda.bdg ...
... success!
14.7.6 checking callpeak_narrow run_callpeak_narrow1_peaks.narrowPeak ...
... success!
14.7.7 checking callpeak_narrow run_callpeak_narrow1_summits.bed ...
... success!
14.7.8 checking callpeak_narrow run_callpeak_narrow1_treat_pileup.bdg ...
... success!
14.7.9 checking callpeak_narrow run_callpeak_narrow2_control_lambda.bdg ...
... success!
14.7.10 checking callpeak_narrow run_callpeak_narrow2_peaks.narrowPeak ...
... success!
14.7.11 checking callpeak_narrow run_callpeak_narrow2_summits.bed ...
... success!
14.7.12 checking callpeak_narrow run_callpeak_narrow2_treat_pileup.bdg ...
... success!
14.7.13 checking callpeak_narrow run_callpeak_narrow3_control_lambda.bdg ...
... success!
14.7.14 checking callpeak_narrow run_callpeak_narrow3_peaks.narrowPeak ...
... success!
14.7.15 checking callpeak_narrow run_callpeak_narrow3_summits.bed ...
... success!
14.7.16 checking callpeak_narrow run_callpeak_narrow3_treat_pileup.bdg ...
... success!
14.7.17 checking callpeak_narrow run_callpeak_narrow4_control_lambda.bdg ...
... success!
14.7.18 checking callpeak_narrow run_callpeak_narrow4_peaks.narrowPeak ...
... success!
14.7.19 checking callpeak_narrow run_callpeak_narrow4_summits.bed ...
... success!
14.7.20 checking callpeak_narrow run_callpeak_narrow4_treat_pileup.bdg ...
... success!
14.7.21 checking callpeak_narrow run_callpeak_narrow5_control_lambda.bdg ...
... success!
14.7.22 checking callpeak_narrow run_callpeak_narrow5_peaks.narrowPeak ...
... success!
14.7.23 checking callpeak_narrow run_callpeak_narrow5_summits.bed ...
... success!
14.7.24 checking callpeak_narrow run_callpeak_narrow5_treat_pileup.bdg ...
... success!
14.8.1 checking callpeak_narrow_revert run_callpeak_narrow_revert_control_lambda.bdg ...
... success!
14.8.2 checking callpeak_narrow_revert run_callpeak_narrow_revert_peaks.narrowPeak ...
... success!
14.8.3 checking callpeak_narrow_revert run_callpeak_narrow_revert_summits.bed ...
... success!
14.8.4 checking callpeak_narrow_revert run_callpeak_narrow_revert_treat_pileup.bdg ...
... success!
14.9.1 checking callpeak_pe_broad run_callpeak_bampe_broad_control_lambda.bdg ...
... success!
14.9.2 checking callpeak_pe_broad run_callpeak_bampe_broad_peaks.broadPeak ...
... success!
14.9.3 checking callpeak_pe_broad run_callpeak_bampe_broad_peaks.gappedPeak ...
... success!
14.9.4 checking callpeak_pe_broad run_callpeak_bampe_broad_treat_pileup.bdg ...
... success!
14.9.5 checking callpeak_pe_broad run_callpeak_bedpe_broad_control_lambda.bdg ...
... success!
14.9.6 checking callpeak_pe_broad run_callpeak_bedpe_broad_peaks.broadPeak ...
... success!
14.9.7 checking callpeak_pe_broad run_callpeak_bedpe_broad_peaks.gappedPeak ...
... success!
14.9.8 checking callpeak_pe_broad run_callpeak_bedpe_broad_treat_pileup.bdg ...
... success!
14.10.1 checking callpeak_pe_narrow run_callpeak_bampe_narrow_control_lambda.bdg ...
... success!
14.10.2 checking callpeak_pe_narrow run_callpeak_bampe_narrow_peaks.narrowPeak ...
... success!
14.10.3 checking callpeak_pe_narrow run_callpeak_bampe_narrow_summits.bed ...
... success!
14.10.4 checking callpeak_pe_narrow run_callpeak_bampe_narrow_treat_pileup.bdg ...
... success!
14.10.5 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_control_lambda.bdg ...
... success!
14.10.6 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_peaks.narrowPeak ...
... success!
14.10.7 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_summits.bed ...
... success!
14.10.8 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_treat_pileup.bdg ...
... success!
14.10.9 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_control_lambda.bdg ...
... success!
14.10.10 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_peaks.narrowPeak ...
... success!
14.10.11 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_summits.bed ...
... success!
14.10.12 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_treat_pileup.bdg ...
... success!
14.11.1 checking cmbreps run_cmbreps_fisher.bdg ...
... success!
14.11.2 checking cmbreps run_cmbreps_max.bdg ...
... success!
14.11.3 checking cmbreps run_cmbreps_mean.bdg ...
... success!
14.12.1 checking filterdup run_filterdup_result.bed ...
... success!
14.12.2 checking filterdup run_filterdup_result_pe.bedpe ...
... success!
14.13.1 checking pileup run_pileup_CTRL.bed.bdg ...
... success!
14.13.2 checking pileup run_pileup_CTRLPE.bampe.bdg ...
... success!
14.13.3 checking pileup run_pileup_CTRLPE.bedpe.bdg ...
... success!
14.13.4 checking pileup run_pileup_ChIP.bed.bdg ...
... success!
14.13.5 checking pileup run_pileup_ChIPPE.bampe.bdg ...
... success!
14.13.6 checking pileup run_pileup_ChIPPE.bedpe.bdg ...
... success!
14.14.1 checking refinepeak run_refinepeak_w_ofile.bed ...
... success!
14.14.2 checking refinepeak run_refinepeak_w_prefix_refinepeak.bed ...
... success!
14.15.1 checking bdgopt run_bdgopt_max.bdg ...
... success!
14.15.2 checking bdgopt run_bdgopt_min.bdg ...
... success!
16. brief speed test
CPU time (mm:ss): 00:04:04
Max mem (KB): 217520
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
dh_auto_install --destdir=debian/macs/ -a -O--buildsystem=pybuild
I: pybuild base:239: /usr/bin/python3.9 setup.py install --root /<<PKGBUILDDIR>>/debian/macs
running install
/usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
warnings.warn(
running build
running build_py
running build_ext
skipping 'MACS2/Prob.c' Cython extension (up-to-date)
skipping 'MACS2/IO/Parser.c' Cython extension (up-to-date)
skipping 'MACS2/Pileup.c' Cython extension (up-to-date)
skipping 'MACS2/PeakModel.c' Cython extension (up-to-date)
skipping 'MACS2/PeakDetect.c' Cython extension (up-to-date)
skipping 'MACS2/Signal.c' Cython extension (up-to-date)
skipping 'MACS2/IO/PeakIO.c' Cython extension (up-to-date)
skipping 'MACS2/IO/BedGraphIO.c' Cython extension (up-to-date)
skipping 'MACS2/IO/FixWidthTrack.c' Cython extension (up-to-date)
skipping 'MACS2/IO/PairedEndTrack.c' Cython extension (up-to-date)
skipping 'MACS2/IO/BedGraph.c' Cython extension (up-to-date)
skipping 'MACS2/IO/ScoreTrack.c' Cython extension (up-to-date)
skipping 'MACS2/IO/CallPeakUnit.c' Cython extension (up-to-date)
running build_scripts
running install_lib
creating /<<PKGBUILDDIR>>/debian/macs/usr
creating /<<PKGBUILDDIR>>/debian/macs/usr/lib
creating /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9
creating /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages
creating /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2/Constants.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2/OptValidator.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2/OutputWriter.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2/__init__.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2/bdgbroadcall_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2/bdgcmp_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2/bdgdiff_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2/bdgopt_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2/bdgpeakcall_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2/callpeak_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2/cmbreps_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2/diffpeak_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2/filterdup_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2/pileup_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2/predictd_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2/randsample_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2/refinepeak_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2
creating /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/__init__.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/Parser.cpython-39-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/PeakIO.cpython-39-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/BedGraphIO.cpython-39-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/FixWidthTrack.cpython-39-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/PairedEndTrack.cpython-39-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/BedGraph.cpython-39-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/ScoreTrack.cpython-39-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/CallPeakUnit.cpython-39-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2/IO
creating /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2/IO/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/__pycache__/__init__.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2/IO/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2/cPosValCalculation.pxd -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2/khash.pxd -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2/Prob.cpython-39-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2/Pileup.cpython-39-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2/PeakModel.cpython-39-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2/PeakDetect.cpython-39-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2/Signal.cpython-39-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2
creating /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2/__pycache__/__init__.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2/__pycache__/Constants.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2/__pycache__/callpeak_cmd.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2/__pycache__/OptValidator.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2/__pycache__/OutputWriter.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2/__pycache__/pileup_cmd.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2/__pycache__/filterdup_cmd.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2/__pycache__/predictd_cmd.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2/__pycache__/randsample_cmd.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2/__pycache__/refinepeak_cmd.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2/__pycache__/bdgcmp_cmd.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2/__pycache__/bdgpeakcall_cmd.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2/__pycache__/bdgbroadcall_cmd.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2/__pycache__/bdgdiff_cmd.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2/__pycache__/cmbreps_cmd.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_MACS2/build/MACS2/__pycache__/bdgopt_cmd.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2/Constants.py to Constants.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2/OptValidator.py to OptValidator.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2/OutputWriter.py to OutputWriter.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2/bdgbroadcall_cmd.py to bdgbroadcall_cmd.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2/bdgcmp_cmd.py to bdgcmp_cmd.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2/bdgdiff_cmd.py to bdgdiff_cmd.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2/bdgopt_cmd.py to bdgopt_cmd.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2/bdgpeakcall_cmd.py to bdgpeakcall_cmd.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2/callpeak_cmd.py to callpeak_cmd.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2/cmbreps_cmd.py to cmbreps_cmd.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2/diffpeak_cmd.py to diffpeak_cmd.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2/filterdup_cmd.py to filterdup_cmd.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2/pileup_cmd.py to pileup_cmd.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2/predictd_cmd.py to predictd_cmd.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2/randsample_cmd.py to randsample_cmd.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2/refinepeak_cmd.py to refinepeak_cmd.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2/IO/__init__.py to __init__.cpython-39.pyc
running install_egg_info
running egg_info
creating MACS2.egg-info
writing MACS2.egg-info/PKG-INFO
writing dependency_links to MACS2.egg-info/dependency_links.txt
writing requirements to MACS2.egg-info/requires.txt
writing top-level names to MACS2.egg-info/top_level.txt
writing manifest file 'MACS2.egg-info/SOURCES.txt'
reading manifest file 'MACS2.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no previously-included files found matching '.gitignore'
warning: no previously-included files found matching '.travis.yml'
no previously-included directories found matching '.github'
no previously-included directories found matching 'DOCKER'
adding license file 'LICENSE'
writing manifest file 'MACS2.egg-info/SOURCES.txt'
Copying MACS2.egg-info to /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.9/dist-packages/MACS2-2.2.7.1.egg-info
Skipping SOURCES.txt
running install_scripts
creating /<<PKGBUILDDIR>>/debian/macs/usr/bin
copying build/scripts-3.9/macs2 -> /<<PKGBUILDDIR>>/debian/macs/usr/bin
changing mode of /<<PKGBUILDDIR>>/debian/macs/usr/bin/macs2 to 755
I: pybuild base:239: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/macs
running install
/usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
warnings.warn(
running build
running build_py
running build_ext
skipping 'MACS2/Prob.c' Cython extension (up-to-date)
skipping 'MACS2/IO/Parser.c' Cython extension (up-to-date)
skipping 'MACS2/Pileup.c' Cython extension (up-to-date)
skipping 'MACS2/PeakModel.c' Cython extension (up-to-date)
skipping 'MACS2/PeakDetect.c' Cython extension (up-to-date)
skipping 'MACS2/Signal.c' Cython extension (up-to-date)
skipping 'MACS2/IO/PeakIO.c' Cython extension (up-to-date)
skipping 'MACS2/IO/BedGraphIO.c' Cython extension (up-to-date)
skipping 'MACS2/IO/FixWidthTrack.c' Cython extension (up-to-date)
skipping 'MACS2/IO/PairedEndTrack.c' Cython extension (up-to-date)
skipping 'MACS2/IO/BedGraph.c' Cython extension (up-to-date)
skipping 'MACS2/IO/ScoreTrack.c' Cython extension (up-to-date)
skipping 'MACS2/IO/CallPeakUnit.c' Cython extension (up-to-date)
running build_scripts
running install_lib
creating /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10
creating /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages
creating /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2/Constants.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2/OptValidator.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2/OutputWriter.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2/__init__.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2/bdgbroadcall_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2/bdgcmp_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2/bdgdiff_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2/bdgopt_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2/bdgpeakcall_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2/callpeak_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2/cmbreps_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2/diffpeak_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2/filterdup_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2/pileup_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2/predictd_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2/randsample_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2/refinepeak_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2
creating /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2/IO/__init__.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2/IO/Parser.cpython-310-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2/IO/PeakIO.cpython-310-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2/IO/BedGraphIO.cpython-310-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2/IO/FixWidthTrack.cpython-310-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2/IO/PairedEndTrack.cpython-310-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2/IO/BedGraph.cpython-310-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2/IO/ScoreTrack.cpython-310-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2/IO/CallPeakUnit.cpython-310-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2/IO
creating /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2/IO/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2/IO/__pycache__/__init__.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2/IO/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2/cPosValCalculation.pxd -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2/khash.pxd -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2/Prob.cpython-310-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2/Pileup.cpython-310-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2/PeakModel.cpython-310-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2/PeakDetect.cpython-310-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2/Signal.cpython-310-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2
creating /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2/__pycache__/__init__.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2/__pycache__/Constants.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2/__pycache__/callpeak_cmd.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2/__pycache__/OptValidator.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2/__pycache__/OutputWriter.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2/__pycache__/pileup_cmd.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2/__pycache__/filterdup_cmd.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2/__pycache__/predictd_cmd.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2/__pycache__/randsample_cmd.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2/__pycache__/refinepeak_cmd.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2/__pycache__/bdgcmp_cmd.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2/__pycache__/bdgpeakcall_cmd.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2/__pycache__/bdgbroadcall_cmd.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2/__pycache__/bdgdiff_cmd.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2/__pycache__/cmbreps_cmd.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_MACS2/build/MACS2/__pycache__/bdgopt_cmd.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2/__pycache__
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2/Constants.py to Constants.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2/OptValidator.py to OptValidator.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2/OutputWriter.py to OutputWriter.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2/__init__.py to __init__.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2/bdgbroadcall_cmd.py to bdgbroadcall_cmd.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2/bdgcmp_cmd.py to bdgcmp_cmd.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2/bdgdiff_cmd.py to bdgdiff_cmd.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2/bdgopt_cmd.py to bdgopt_cmd.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2/bdgpeakcall_cmd.py to bdgpeakcall_cmd.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2/callpeak_cmd.py to callpeak_cmd.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2/cmbreps_cmd.py to cmbreps_cmd.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2/diffpeak_cmd.py to diffpeak_cmd.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2/filterdup_cmd.py to filterdup_cmd.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2/pileup_cmd.py to pileup_cmd.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2/predictd_cmd.py to predictd_cmd.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2/randsample_cmd.py to randsample_cmd.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2/refinepeak_cmd.py to refinepeak_cmd.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2/IO/__init__.py to __init__.cpython-310.pyc
running install_egg_info
running egg_info
writing MACS2.egg-info/PKG-INFO
writing dependency_links to MACS2.egg-info/dependency_links.txt
writing requirements to MACS2.egg-info/requires.txt
writing top-level names to MACS2.egg-info/top_level.txt
reading manifest file 'MACS2.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no previously-included files found matching '.gitignore'
warning: no previously-included files found matching '.travis.yml'
no previously-included directories found matching '.github'
no previously-included directories found matching 'DOCKER'
adding license file 'LICENSE'
writing manifest file 'MACS2.egg-info/SOURCES.txt'
Copying MACS2.egg-info to /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.10/dist-packages/MACS2-2.2.7.1.egg-info
Skipping SOURCES.txt
running install_scripts
copying build/scripts-3.10/macs2 -> /<<PKGBUILDDIR>>/debian/macs/usr/bin
changing mode of /<<PKGBUILDDIR>>/debian/macs/usr/bin/macs2 to 755
dh_installdocs -a -O--buildsystem=pybuild
dh_installchangelogs -a -O--buildsystem=pybuild
dh_installexamples -a -O--buildsystem=pybuild
dh_installman -a -O--buildsystem=pybuild
dh_python3 -a -O--buildsystem=pybuild
dh_installsystemduser -a -O--buildsystem=pybuild
dh_lintian -a -O--buildsystem=pybuild
dh_perl -a -O--buildsystem=pybuild
dh_link -a -O--buildsystem=pybuild
dh_strip_nondeterminism -a -O--buildsystem=pybuild
dh_compress -a -O--buildsystem=pybuild
dh_fixperms -a -O--buildsystem=pybuild
dh_missing -a -O--buildsystem=pybuild
dh_dwz -a -O--buildsystem=pybuild
dh_strip -a -O--buildsystem=pybuild
dh_makeshlibs -a -O--buildsystem=pybuild
dh_shlibdeps -a -O--buildsystem=pybuild
dh_installdeb -a -O--buildsystem=pybuild
dh_gencontrol -a -O--buildsystem=pybuild
dpkg-gencontrol: warning: package macs: substitution variable ${python3:Versions} unused, but is defined
dpkg-gencontrol: warning: package macs: substitution variable ${python3:Versions} unused, but is defined
dh_md5sums -a -O--buildsystem=pybuild
dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'macs' in '../macs_2.2.7.1-5+b1_armhf.deb'.
dpkg-deb: building package 'macs-dbgsym' in '../macs-dbgsym_2.2.7.1-5+b1_armhf.deb'.
dpkg-genbuildinfo --build=any -O../macs_2.2.7.1-5+b1_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> -O../macs_2.2.7.1-5+b1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-source: info: using options from macs-2.2.7.1/debian/source/options: --extend-diff-ignore=(^|/)(.*\.c)$|.*[.]egg-info/
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2022-04-21T02:43:46Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
macs_2.2.7.1-5+b1_armhf.changes:
--------------------------------
Format: 1.8
Date: Mon, 08 Nov 2021 14:29:12 +0100
Source: macs (2.2.7.1-5)
Binary: macs macs-dbgsym
Binary-Only: yes
Architecture: armhf
Version: 2.2.7.1-5+b1
Distribution: bookworm-staging
Urgency: low
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Description:
macs - Model-based Analysis of ChIP-Seq on short reads sequencers
Changes:
macs (2.2.7.1-5+b1) bookworm-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
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Files:
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+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
macs-dbgsym_2.2.7.1-5+b1_armhf.deb
----------------------------------
new Debian package, version 2.0.
size 13249512 bytes: control archive=1784 bytes.
1407 bytes, 12 lines control
2840 bytes, 27 lines md5sums
Package: macs-dbgsym
Source: macs (2.2.7.1-5)
Version: 2.2.7.1-5+b1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 13844
Depends: macs (= 2.2.7.1-5+b1)
Section: debug
Priority: optional
Description: debug symbols for macs
Build-Ids: 004831e4a4dcbc70eff992cd47863133b33b8b84 0ba8e6be1b523030488d7041a6a89a400c934416 128eee8379ebe0b9b26071cd93be1dfc0f6eac03 156d84a714d937c26e66fe2e1941c1db6b144b44 1abc36701b8afeeaab1425409f39feec4b5aa06b 27761dbfa47a5c806bc72446b6cb020f789d9cda 39b3e6373471c4f4f780b8f40314ab85de67cefa 494666870c28da3fe493ded1c89e8d77a3fd325e 4c84fe6f96b3221583321217cfb32f5f0467d870 50f1c1e6d6b8624f4800287c2617072f2bdf494a 5278e420868e0490b5e051f87aed6f033f11f200 74bbeedc9ec49751fa372dd52f054ace2e3a6b9d 89b472d0e08dfaf6fbbcc996f0645f995b06ece6 92d92d3dd3557c2ce57b3bc1337bf4413af38ba3 950cbd8eb65622bc24455d1aa1d79990589923ba 97f1b83d31c54e8edbdea84f3fc4ebb3d5dcab0c a4acb34db76c707e6cdc99628db48f8ceb812a56 b42d2abda29af3e6535a2004de8be1eaa2253969 b82f56a00e8c6f367fd36d7c8a4cebd9d8bbb5ed b888061568b1ef2b96c555dbef0f80bf2514efe9 c4360635e80492ba3e245df0e983867ac922e18f c58dd40729e73940f5328f2d2dac438be0c13ef0 eec9d08f144d95a7efe4c1bb22904cc8d0ad101a f0aa62914b7c9d65d36126179836c8a1863a4b63 f12dd429616806df719d65ce1ce08d1c752916fb f683183e00bf70addd8c52dd163303b1b86d34ba
drwxr-xr-x root/root 0 2021-11-08 13:29 ./
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-rw-r--r-- root/root 411180 2021-11-08 13:29 ./usr/lib/debug/.build-id/0b/a8e6be1b523030488d7041a6a89a400c934416.debug
drwxr-xr-x root/root 0 2021-11-08 13:29 ./usr/lib/debug/.build-id/12/
-rw-r--r-- root/root 765740 2021-11-08 13:29 ./usr/lib/debug/.build-id/12/8eee8379ebe0b9b26071cd93be1dfc0f6eac03.debug
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-rw-r--r-- root/root 178304 2021-11-08 13:29 ./usr/lib/debug/.build-id/15/6d84a714d937c26e66fe2e1941c1db6b144b44.debug
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-rw-r--r-- root/root 391936 2021-11-08 13:29 ./usr/lib/debug/.build-id/b8/2f56a00e8c6f367fd36d7c8a4cebd9d8bbb5ed.debug
-rw-r--r-- root/root 791536 2021-11-08 13:29 ./usr/lib/debug/.build-id/b8/88061568b1ef2b96c555dbef0f80bf2514efe9.debug
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-rw-r--r-- root/root 762500 2021-11-08 13:29 ./usr/lib/debug/.build-id/f6/83183e00bf70addd8c52dd163303b1b86d34ba.debug
drwxr-xr-x root/root 0 2021-11-08 13:29 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root 0 2021-11-08 13:29 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root 64204 2021-11-08 13:29 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/macs.debug
drwxr-xr-x root/root 0 2021-11-08 13:29 ./usr/share/
drwxr-xr-x root/root 0 2021-11-08 13:29 ./usr/share/doc/
lrwxrwxrwx root/root 0 2021-11-08 13:29 ./usr/share/doc/macs-dbgsym -> macs
macs_2.2.7.1-5+b1_armhf.deb
---------------------------
new Debian package, version 2.0.
size 2896596 bytes: control archive=3248 bytes.
984 bytes, 19 lines control
6837 bytes, 74 lines md5sums
255 bytes, 12 lines * postinst #!/bin/sh
399 bytes, 12 lines * prerm #!/bin/sh
Package: macs
Source: macs (2.2.7.1-5)
Version: 2.2.7.1-5+b1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 8940
Depends: python3 (<< 3.11), python3 (>= 3.9~), python3-numpy, python3:any, libc6 (>= 2.29)
Section: science
Priority: optional
Homepage: https://github.com/taoliu/MACS/
Description: Model-based Analysis of ChIP-Seq on short reads sequencers
MACS empirically models the length of the sequenced ChIP fragments, which
tends to be shorter than sonication or library construction size estimates,
and uses it to improve the spatial resolution of predicted binding sites.
MACS also uses a dynamic Poisson distribution to effectively capture local
biases in the genome sequence, allowing for more sensitive and robust
prediction. MACS compares favorably to existing ChIP-Seq peak-finding
algorithms, is publicly available open source, and can be used for ChIP-Seq
with or without control samples.
drwxr-xr-x root/root 0 2021-11-08 13:29 ./
drwxr-xr-x root/root 0 2021-11-08 13:29 ./usr/
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| Post Build |
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| Cleanup |
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Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
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| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 1710452
Build-Time: 2474
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 352
Job: macs_2.2.7.1-5
Machine Architecture: armhf
Package: macs
Package-Time: 2869
Source-Version: 2.2.7.1-5
Space: 1710452
Status: successful
Version: 2.2.7.1-5+b1
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Finished at 2022-04-21T02:43:46Z
Build needed 00:47:49, 1710452k disk space