macs →
2.2.7.1-2 →
armhf → 2020-05-10 00:31:41
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-02
+==============================================================================+
| macs 2.2.7.1-2 (armhf) Sat, 09 May 2020 23:05:19 +0000 |
+==============================================================================+
Package: macs
Version: 2.2.7.1-2
Source Version: 2.2.7.1-2
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-f20c2630-9bf5-4c83-ace6-5a7b57a2c139' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.7 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.8 MB]
Fetched 24.5 MB in 24s (1009 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'macs' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/macs.git
Please use:
git clone https://salsa.debian.org/med-team/macs.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 136 MB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main macs 2.2.7.1-2 (dsc) [2084 B]
Get:2 http://172.17.0.1/private bullseye-staging/main macs 2.2.7.1-2 (tar) [135 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main macs 2.2.7.1-2 (diff) [1267 kB]
Fetched 136 MB in 19s (7161 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/macs-0FJMNs/macs-2.2.7.1' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/macs-0FJMNs' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-mAjANm/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-mAjANm/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-mAjANm/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-mAjANm/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-mAjANm/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-mAjANm/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-mAjANm/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-mAjANm/apt_archive ./ Packages [430 B]
Fetched 2106 B in 1s (2739 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 16 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-mAjANm/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (22.3 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12265 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 12), dh-python, python3-all-dev, python3-numpy, python3-setuptools, python3-pip, python3-pytest, cython3, help2man, procps
Filtered Build-Depends: debhelper-compat (= 12), dh-python, python3-all-dev, python3-numpy, python3-setuptools, python3-pip, python3-pytest, cython3, help2man, procps
dpkg-deb: building package 'sbuild-build-depends-macs-dummy' in '/<<BUILDDIR>>/resolver-mAjANm/apt_archive/sbuild-build-depends-macs-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-macs-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-mAjANm/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-mAjANm/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-mAjANm/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-mAjANm/apt_archive ./ Sources [541 B]
Get:5 copy:/<<BUILDDIR>>/resolver-mAjANm/apt_archive ./ Packages [625 B]
Fetched 2499 B in 1s (3275 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install macs build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils ca-certificates
cython3 debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file
gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl
libblas3 libbsd0 libcroco3 libdebhelper-perl libelf1 libexpat1 libexpat1-dev
libfile-stripnondeterminism-perl libgfortran5 libglib2.0-0 libicu63
liblapack3 libmagic-mgc libmagic1 libmpdec2 libncurses6 libpipeline1
libprocps8 libpython3-all-dev libpython3-dev libpython3-stdlib
libpython3.7-minimal libpython3.7-stdlib libpython3.8 libpython3.8-dev
libpython3.8-minimal libpython3.8-stdlib libsigsegv2 libssl1.1
libsub-override-perl libtinfo5 libtool libuchardet0 libxml2 m4 man-db
mime-support openssl po-debconf procps python-pip-whl python3 python3-all
python3-all-dev python3-atomicwrites python3-attr python3-dev
python3-distutils python3-importlib-metadata python3-lib2to3 python3-minimal
python3-more-itertools python3-numpy python3-packaging python3-pip
python3-pkg-resources python3-pluggy python3-py python3-pyparsing
python3-pytest python3-setuptools python3-six python3-wcwidth python3-wheel
python3-zipp python3.7 python3.7-minimal python3.8 python3.8-dev
python3.8-minimal sensible-utils zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation cython-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev
groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less
www-browser libmail-box-perl python3-doc python3-tk python3-venv
python-attr-doc gfortran python-numpy-doc python3-numpy-dbg subversion
python-pyparsing-doc python-setuptools-doc python3.7-venv python3.7-doc
binfmt-support python3.8-venv python3.8-doc
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs libgpm2 libltdl-dev libmail-sendmail-perl psmisc
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils ca-certificates
cython3 debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file
gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl
libblas3 libbsd0 libcroco3 libdebhelper-perl libelf1 libexpat1 libexpat1-dev
libfile-stripnondeterminism-perl libgfortran5 libglib2.0-0 libicu63
liblapack3 libmagic-mgc libmagic1 libmpdec2 libncurses6 libpipeline1
libprocps8 libpython3-all-dev libpython3-dev libpython3-stdlib
libpython3.7-minimal libpython3.7-stdlib libpython3.8 libpython3.8-dev
libpython3.8-minimal libpython3.8-stdlib libsigsegv2 libssl1.1
libsub-override-perl libtinfo5 libtool libuchardet0 libxml2 m4 man-db
mime-support openssl po-debconf procps python-pip-whl python3 python3-all
python3-all-dev python3-atomicwrites python3-attr python3-dev
python3-distutils python3-importlib-metadata python3-lib2to3 python3-minimal
python3-more-itertools python3-numpy python3-packaging python3-pip
python3-pkg-resources python3-pluggy python3-py python3-pyparsing
python3-pytest python3-setuptools python3-six python3-wcwidth python3-wheel
python3-zipp python3.7 python3.7-minimal python3.8 python3.8-dev
python3.8-minimal sbuild-build-depends-macs-dummy sensible-utils zlib1g-dev
0 upgraded, 92 newly installed, 0 to remove and 16 not upgraded.
Need to get 47.1 MB of archives.
After this operation, 187 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-mAjANm/apt_archive ./ sbuild-build-depends-macs-dummy 0.invalid.0 [916 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libtinfo5 armhf 6.2-1 [318 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-4 [783 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.2-2 [29.6 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.1-1 [1262 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf libssl1.1 armhf 1.1.1g-1 [1272 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-minimal armhf 3.8.3~rc1-1 [751 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.9-1 [71.5 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf python3.8-minimal armhf 3.8.3~rc1-1 [1627 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf python3-minimal armhf 3.8.2-3 [37.6 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf mime-support all 3.64 [37.8 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf libmpdec2 armhf 2.4.2-3 [68.1 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-stdlib armhf 3.8.3~rc1-1 [1598 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf python3.8 armhf 3.8.3~rc1-1 [415 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf libpython3-stdlib armhf 3.8.2-3 [20.8 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf python3 armhf 3.8.2-3 [63.7 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-minimal armhf 3.7.7-1 [585 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf python3.7-minimal armhf 3.7.7-1 [1532 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf libncurses6 armhf 6.2-1 [79.5 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf libprocps8 armhf 2:3.3.16-4 [59.8 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf procps armhf 2:3.3.16-4 [238 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12+nmu1 [16.0 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-4 [262 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.38-4 [112 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-4 [66.9 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.2-1 [775 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf openssl armhf 1.1.1g-1 [811 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf ca-certificates all 20190110 [157 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf cython3 armhf 0.29.14-1 [1398 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-14 [513 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 13 [184 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.8.0-1 [24.2 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.8.0-1 [14.8 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.64.2-1 [1158 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf libicu63 armhf 63.2-3 [7987 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-5 [592 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 13 [1002 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf python3-lib2to3 all 3.8.2-2 [78.4 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf python3-distutils all 3.8.2-2 [145 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf dh-python all 4.20200315 [91.6 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf help2man armhf 1.47.15 [181 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf libblas3 armhf 3.9.0-2 [108 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf libexpat1-dev armhf 2.2.9-1 [119 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf libgfortran5 armhf 10-20200418-1+rpi1 [231 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf liblapack3 armhf 3.9.0-2 [1602 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8 armhf 3.8.3~rc1-1 [1366 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-dev armhf 3.8.3~rc1-1 [3042 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf libpython3-dev armhf 3.8.2-3 [21.0 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf libpython3-all-dev armhf 3.8.2-3 [1068 B]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-stdlib armhf 3.7.7-1 [1670 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf python-pip-whl all 20.1-1 [1880 kB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf python3-all armhf 3.8.2-3 [1056 B]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf python3.8-dev armhf 3.8.3~rc1-1 [516 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf python3-dev armhf 3.8.2-3 [1164 B]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf python3-all-dev armhf 3.8.2-3 [1064 B]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf python3-atomicwrites all 1.3.0-1 [9964 B]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf python3-attr all 19.3.0-4 [43.3 kB]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf python3-six all 1.14.0-3 [16.7 kB]
Get:78 http://172.17.0.1/private bullseye-staging/main armhf python3-more-itertools all 4.2.0-2 [42.6 kB]
Get:79 http://172.17.0.1/private bullseye-staging/main armhf python3-zipp all 1.0.0-2 [5984 B]
Get:80 http://172.17.0.1/private bullseye-staging/main armhf python3-importlib-metadata all 1.6.0-1 [10.3 kB]
Get:81 http://172.17.0.1/private bullseye-staging/main armhf python3.7 armhf 3.7.7-1 [354 kB]
Get:82 http://172.17.0.1/private bullseye-staging/main armhf python3-pkg-resources all 46.1.3-1 [183 kB]
Get:83 http://172.17.0.1/private bullseye-staging/main armhf python3-numpy armhf 1:1.17.4-5+b1 [4484 kB]
Get:84 http://172.17.0.1/private bullseye-staging/main armhf python3-pyparsing all 2.4.7-1 [109 kB]
Get:85 http://172.17.0.1/private bullseye-staging/main armhf python3-packaging all 20.3-1.2 [29.9 kB]
Get:86 http://172.17.0.1/private bullseye-staging/main armhf python3-setuptools all 46.1.3-1 [382 kB]
Get:87 http://172.17.0.1/private bullseye-staging/main armhf python3-wheel all 0.34.2-1 [24.0 kB]
Get:88 http://172.17.0.1/private bullseye-staging/main armhf python3-pip all 20.1-1 [294 kB]
Get:89 http://172.17.0.1/private bullseye-staging/main armhf python3-pluggy all 0.13.0-4 [22.0 kB]
Get:90 http://172.17.0.1/private bullseye-staging/main armhf python3-py all 1.8.1-2 [86.8 kB]
Get:91 http://172.17.0.1/private bullseye-staging/main armhf python3-wcwidth all 0.1.9+dfsg1-1 [18.2 kB]
Get:92 http://172.17.0.1/private bullseye-staging/main armhf python3-pytest all 4.6.9-3 [267 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 47.1 MB in 4s (10.9 MB/s)
Selecting previously unselected package libbsd0:armhf.
(Reading database ... 12265 files and directories currently installed.)
Preparing to unpack .../00-libbsd0_0.10.0-1_armhf.deb ...
Unpacking libbsd0:armhf (0.10.0-1) ...
Selecting previously unselected package libtinfo5:armhf.
Preparing to unpack .../01-libtinfo5_6.2-1_armhf.deb ...
Unpacking libtinfo5:armhf (6.2-1) ...
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Preparing to unpack .../02-bsdmainutils_11.1.2_armhf.deb ...
Unpacking bsdmainutils (11.1.2) ...
Selecting previously unselected package libuchardet0:armhf.
Preparing to unpack .../03-libuchardet0_0.0.6-3_armhf.deb ...
Unpacking libuchardet0:armhf (0.0.6-3) ...
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Preparing to unpack .../04-groff-base_1.22.4-4_armhf.deb ...
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No schema files found: doing nothing.
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libexpat1-dev:armhf (2.2.9-1) ...
Setting up libncurses6:armhf (6.2-1) ...
Setting up libsigsegv2:armhf (2.12-2) ...
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Setting up libfile-stripnondeterminism-perl (1.8.0-1) ...
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libtool (2.4.6-14) ...
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Setting up ca-certificates (20190110) ...
Updating certificates in /etc/ssl/certs...
128 added, 0 removed; done.
Setting up python3-wcwidth (0.1.9+dfsg1-1) ...
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Setting up libpython3.8:armhf (3.8.3~rc1-1) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up cython3 (0.29.14-1) ...
Setting up libcroco3:armhf (0.6.13-1) ...
Setting up autoconf (2.69-11.1) ...
Setting up dh-strip-nondeterminism (1.8.0-1) ...
Setting up dwz (0.13-5) ...
Setting up groff-base (1.22.4-4) ...
Setting up procps (2:3.3.16-4) ...
update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode
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Setting up python3-pkg-resources (46.1.3-1) ...
Setting up automake (1:1.16.2-1) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up python3-distutils (3.8.2-2) ...
Setting up dh-python (4.20200315) ...
Setting up python3-more-itertools (4.2.0-2) ...
Setting up python3-attr (19.3.0-4) ...
Setting up python3.7 (3.7.7-1) ...
Setting up gettext (0.19.8.1-10) ...
Setting up python3-setuptools (46.1.3-1) ...
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Setting up python3-all (3.8.2-3) ...
Setting up python3-zipp (1.0.0-2) ...
Setting up man-db (2.9.1-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up python3-packaging (20.3-1.2) ...
Setting up libpython3.8-dev:armhf (3.8.3~rc1-1) ...
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Setting up python3.8-dev (3.8.3~rc1-1) ...
Setting up libpython3-dev:armhf (3.8.2-3) ...
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Setting up po-debconf (1.0.21) ...
Setting up libpython3-all-dev:armhf (3.8.2-3) ...
Setting up python3-dev (3.8.2-3) ...
Setting up python3-pluggy (0.13.0-4) ...
Setting up python3-all-dev (3.8.2-3) ...
Setting up python3-pytest (4.6.9-3) ...
Setting up dh-autoreconf (19) ...
Setting up debhelper (13) ...
Setting up sbuild-build-depends-macs-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.30-4+rpi1) ...
Processing triggers for ca-certificates (20190110) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.34-5+rpi1 dpkg-dev_1.19.7 g++-9_9.3.0-10+rpi1 gcc-9_9.3.0-10+rpi1 libc6-dev_2.30-4+rpi1 libstdc++-9-dev_9.3.0-10+rpi1 libstdc++6_10-20200418-1+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2
Package versions: adduser_3.118 apt_2.0.2 autoconf_2.69-11.1 automake_1:1.16.2-1 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.47 bash_5.0-6 binutils_2.34-5+rpi1 binutils-arm-linux-gnueabihf_2.34-5+rpi1 binutils-common_2.34-5+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 ca-certificates_20190110 coreutils_8.30-3 cpp_4:9.2.1-3.1+rpi1 cpp-9_9.3.0-10+rpi1 cython3_0.29.14-1 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13 debianutils_4.9.1 dh-autoreconf_19 dh-python_4.20200315 dh-strip-nondeterminism_1.8.0-1 diffutils_1:3.7-3 dirmngr_2.2.20-1 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.38-4 findutils_4.7.0-1 g++_4:9.2.1-3.1+rpi1 g++-9_9.3.0-10+rpi1 gcc_4:9.2.1-3.1+rpi1 gcc-10-base_10-20200418-1+rpi1 gcc-6-base_6.5.0-1+rpi3 gcc-7-base_7.5.0-5 gcc-8-base_8.4.0-1+rpi1 gcc-9_9.3.0-10+rpi1 gcc-9-base_9.3.0-10+rpi1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gnupg_2.2.20-1 gnupg-l10n_2.2.20-1 gnupg-utils_2.2.20-1 gpg_2.2.20-1 gpg-agent_2.2.20-1 gpg-wks-client_2.2.20-1 gpg-wks-server_2.2.20-1 gpgconf_2.2.20-1 gpgsm_2.2.20-1 gpgv_2.2.20-1 grep_3.4-1 groff-base_1.22.4-4 gzip_1.10-2 help2man_1.47.15 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20190709-3 libacl1_2.2.53-6 libapt-pkg6.0_2.0.2 libarchive-zip-perl_1.68-1 libasan5_9.3.0-10+rpi1 libassuan0_2.5.3-7 libatomic1_10-20200418-1+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3 libaudit1_1:2.8.5-3 libbinutils_2.34-5+rpi1 libblas3_3.9.0-2 libblkid1_2.34-0.1 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.30-4+rpi1 libc-dev-bin_2.30-4+rpi1 libc6_2.30-4+rpi1 libc6-dev_2.30-4+rpi1 libcap-ng0_0.7.9-2.1+b1 libcap2_1:2.33-1 libcap2-bin_1:2.33-1 libcc1-0_10-20200418-1+rpi1 libcom-err2_1.45.6-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.16-1 libcrypt1_1:4.4.16-1 libctf-nobfd0_2.34-5+rpi1 libctf0_2.34-5+rpi1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.251 libdebhelper-perl_13 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libexpat1_2.2.9-1 libexpat1-dev_2.2.9-1 libext2fs2_1.45.6-1 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi7_3.3-4 libfile-stripnondeterminism-perl_1.8.0-1 libgcc-9-dev_9.3.0-10+rpi1 libgcc-s1_10-20200418-1+rpi1 libgcc1_1:10-20200418-1+rpi1 libgcrypt20_1.8.5-5 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libgfortran5_10-20200418-1+rpi1 libglib2.0-0_2.64.2-1 libgmp10_2:6.2.0+dfsg-4 libgnutls30_3.6.13-2 libgomp1_10-20200418-1+rpi1 libgpg-error0_1.37-1 libhogweed5_3.5.1+really3.5.1-2 libicu63_63.2-3 libidn2-0_2.3.0-1 libisl22_0.22.1-1 libksba8_1.3.5-2 liblapack3_3.9.0-2 libldap-2.4-2_2.4.49+dfsg-4+rpi1 libldap-common_2.4.49+dfsg-4+rpi1 liblocale-gettext-perl_1.07-4 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-4 libmagic1_1:5.38-4 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpdec2_2.4.2-3 libmpfr6_4.0.2-1 libncurses6_6.2-1 libncursesw6_6.2-1 libnettle7_3.5.1+really3.5.1-2 libnpth0_1.6-1 libp11-kit0_0.23.20-1 libpam-cap_1:2.33-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12 libperl5.30_5.30.0-10 libpipeline1_1.5.2-2 libprocps8_2:3.3.16-4 libpython3-all-dev_3.8.2-3 libpython3-dev_3.8.2-3 libpython3-stdlib_3.8.2-3 libpython3.7-minimal_3.7.7-1 libpython3.7-stdlib_3.7.7-1 libpython3.8_3.8.3~rc1-1 libpython3.8-dev_3.8.3~rc1-1 libpython3.8-minimal_3.8.3~rc1-1 libpython3.8-stdlib_3.8.3~rc1-1 libreadline8_8.0-4 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.3-1+rpi1 libselinux1_3.0-1+b1 libsemanage-common_3.0-1 libsemanage1_3.0-1+b1 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libsqlite3-0_3.31.1-5 libss2_1.45.6-1 libssl1.1_1.1.1g-1 libstdc++-9-dev_9.3.0-10+rpi1 libstdc++6_10-20200418-1+rpi1 libsub-override-perl_0.09-2 libsystemd0_245.5-1+rpi1 libtasn1-6_4.16.0-2 libtext-charwidth-perl_0.04-10 libtext-iconv-perl_1.7-7 libtinfo5_6.2-1 libtinfo6_6.2-1 libtool_2.4.6-14 libubsan1_10-20200418-1+rpi1 libuchardet0_0.0.6-3 libudev1_245.5-1+rpi1 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libxml2_2.9.10+dfsg-5 libzstd1_1.4.4+dfsg-3+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.1-1 mawk_1.3.4.20200120-2 mime-support_3.64 mount_2.34-0.1 ncurses-base_6.2-1 ncurses-bin_6.2-1 netbase_6.1 openssl_1.1.1g-1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.0-10 perl-base_5.30.0-10 perl-modules-5.30_5.30.0-10 pinentry-curses_1.1.0-3 po-debconf_1.0.21 procps_2:3.3.16-4 python-pip-whl_20.1-1 python3_3.8.2-3 python3-all_3.8.2-3 python3-all-dev_3.8.2-3 python3-atomicwrites_1.3.0-1 python3-attr_19.3.0-4 python3-dev_3.8.2-3 python3-distutils_3.8.2-2 python3-importlib-metadata_1.6.0-1 python3-lib2to3_3.8.2-2 python3-minimal_3.8.2-3 python3-more-itertools_4.2.0-2 python3-numpy_1:1.17.4-5+b1 python3-packaging_20.3-1.2 python3-pip_20.1-1 python3-pkg-resources_46.1.3-1 python3-pluggy_0.13.0-4 python3-py_1.8.1-2 python3-pyparsing_2.4.7-1 python3-pytest_4.6.9-3 python3-setuptools_46.1.3-1 python3-six_1.14.0-3 python3-wcwidth_0.1.9+dfsg1-1 python3-wheel_0.34.2-1 python3-zipp_1.0.0-2 python3.7_3.7.7-1 python3.7-minimal_3.7.7-1 python3.8_3.8.3~rc1-1 python3.8-dev_3.8.3~rc1-1 python3.8-minimal_3.8.3~rc1-1 raspbian-archive-keyring_20120528.2 readline-common_8.0-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-macs-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-3 tar_1.30+dfsg-7 tzdata_2019c-3 util-linux_2.34-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Mon Apr 27 17:32:49 2020 UTC
gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./macs_2.2.7.1-2.dsc
dpkg-source: info: extracting macs in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking macs_2.2.7.1.orig.tar.gz
dpkg-source: info: unpacking macs_2.2.7.1-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying spelling
dpkg-source: info: applying keep_debug
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-f20c2630-9bf5-4c83-ace6-5a7b57a2c139
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package macs
dpkg-buildpackage: info: source version 2.2.7.1-2
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
dpkg-source: info: using options from macs-2.2.7.1/debian/source/options: --extend-diff-ignore=(^|/)(.*\.c)$|.*[.]egg-info/
debian/rules clean
dh clean --with python3 --buildsystem=pybuild
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean || true
I: pybuild base:217: python3.8 setup.py clean
Requirement already satisfied: numpy>=1.17 in /usr/lib/python3/dist-packages (1.17.4)
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.8' does not exist -- can't clean it
rm -Rf test/macs2.2.7.1-2* test/speedtest*
rm -f debian/*.1 debian/*-man-include
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary-arch
dh binary-arch --with python3 --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:217: python3.8 setup.py config
Requirement already satisfied: numpy>=1.17 in /usr/lib/python3/dist-packages (1.17.4)
running config
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
for pyx in $(find MACS2/ -name "*.pyx"); do \
rm -f ${pyx%%.pyx}.{h,c}; touch ${pyx}; done
dh_auto_build
I: pybuild base:217: /usr/bin/python3 setup.py build
Requirement already satisfied: numpy>=1.17 in /usr/lib/python3/dist-packages (1.17.4)
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2
copying MACS2/Constants.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2
copying MACS2/OptValidator.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2
copying MACS2/OutputWriter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2
copying MACS2/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2
copying MACS2/bdgbroadcall_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2
copying MACS2/bdgcmp_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2
copying MACS2/bdgdiff_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2
copying MACS2/bdgopt_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2
copying MACS2/bdgpeakcall_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2
copying MACS2/callpeak_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2
copying MACS2/cmbreps_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2
copying MACS2/diffpeak_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2
copying MACS2/filterdup_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2
copying MACS2/pileup_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2
copying MACS2/predictd_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2
copying MACS2/randsample_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2
copying MACS2/refinepeak_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2/IO
copying MACS2/IO/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2/IO
copying MACS2/cPosValCalculation.pxd -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2
copying MACS2/khash.pxd -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2
running build_ext
cythoning MACS2/Prob.pyx to MACS2/Prob.c
cythoning MACS2/IO/Parser.pyx to MACS2/IO/Parser.c
cythoning MACS2/Pileup.pyx to MACS2/Pileup.c
cythoning MACS2/PeakModel.pyx to MACS2/PeakModel.c
cythoning MACS2/PeakDetect.pyx to MACS2/PeakDetect.c
cythoning MACS2/Signal.pyx to MACS2/Signal.c
cythoning MACS2/IO/PeakIO.pyx to MACS2/IO/PeakIO.c
cythoning MACS2/IO/BedGraphIO.pyx to MACS2/IO/BedGraphIO.c
cythoning MACS2/IO/FixWidthTrack.pyx to MACS2/IO/FixWidthTrack.c
cythoning MACS2/IO/PairedEndTrack.pyx to MACS2/IO/PairedEndTrack.c
cythoning MACS2/IO/BedGraph.pyx to MACS2/IO/BedGraph.c
cythoning MACS2/IO/ScoreTrack.pyx to MACS2/IO/ScoreTrack.c
cythoning MACS2/IO/CallPeakUnit.pyx to MACS2/IO/CallPeakUnit.c
building 'MACS2.Prob' extension
creating build
creating build/temp.linux-armhf-3.8
creating build/temp.linux-armhf-3.8/MACS2
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c MACS2/Prob.c -o build/temp.linux-armhf-3.8/MACS2/Prob.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.8/MACS2/Prob.o -lm -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2/Prob.cpython-38-arm-linux-gnueabihf.so
building 'MACS2.IO.Parser' extension
creating build/temp.linux-armhf-3.8/MACS2/IO
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c MACS2/IO/Parser.c -o build/temp.linux-armhf-3.8/MACS2/IO/Parser.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.8/MACS2/IO/Parser.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2/IO/Parser.cpython-38-arm-linux-gnueabihf.so
building 'MACS2.Pileup' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c MACS2/Pileup.c -o build/temp.linux-armhf-3.8/MACS2/Pileup.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c MACS2/cPosValCalculation.c -o build/temp.linux-armhf-3.8/MACS2/cPosValCalculation.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.8/MACS2/Pileup.o build/temp.linux-armhf-3.8/MACS2/cPosValCalculation.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2/Pileup.cpython-38-arm-linux-gnueabihf.so
building 'MACS2.PeakModel' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c MACS2/PeakModel.c -o build/temp.linux-armhf-3.8/MACS2/PeakModel.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.8/MACS2/PeakModel.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2/PeakModel.cpython-38-arm-linux-gnueabihf.so
building 'MACS2.PeakDetect' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.8 -c MACS2/PeakDetect.c -o build/temp.linux-armhf-3.8/MACS2/PeakDetect.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.8/MACS2/PeakDetect.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2/PeakDetect.cpython-38-arm-linux-gnueabihf.so
building 'MACS2.Signal' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c MACS2/Signal.c -o build/temp.linux-armhf-3.8/MACS2/Signal.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.8/MACS2/Signal.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2/Signal.cpython-38-arm-linux-gnueabihf.so
building 'MACS2.IO.PeakIO' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.8 -c MACS2/IO/PeakIO.c -o build/temp.linux-armhf-3.8/MACS2/IO/PeakIO.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.8/MACS2/IO/PeakIO.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2/IO/PeakIO.cpython-38-arm-linux-gnueabihf.so
building 'MACS2.IO.BedGraphIO' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.8 -c MACS2/IO/BedGraphIO.c -o build/temp.linux-armhf-3.8/MACS2/IO/BedGraphIO.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.8/MACS2/IO/BedGraphIO.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2/IO/BedGraphIO.cpython-38-arm-linux-gnueabihf.so
building 'MACS2.IO.FixWidthTrack' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c MACS2/IO/FixWidthTrack.c -o build/temp.linux-armhf-3.8/MACS2/IO/FixWidthTrack.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.8/MACS2/IO/FixWidthTrack.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2/IO/FixWidthTrack.cpython-38-arm-linux-gnueabihf.so
building 'MACS2.IO.PairedEndTrack' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c MACS2/IO/PairedEndTrack.c -o build/temp.linux-armhf-3.8/MACS2/IO/PairedEndTrack.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.8/MACS2/IO/PairedEndTrack.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2/IO/PairedEndTrack.cpython-38-arm-linux-gnueabihf.so
building 'MACS2.IO.BedGraph' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.8 -c MACS2/IO/BedGraph.c -o build/temp.linux-armhf-3.8/MACS2/IO/BedGraph.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.8/MACS2/IO/BedGraph.o -lm -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2/IO/BedGraph.cpython-38-arm-linux-gnueabihf.so
building 'MACS2.IO.ScoreTrack' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c MACS2/IO/ScoreTrack.c -o build/temp.linux-armhf-3.8/MACS2/IO/ScoreTrack.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.8/MACS2/IO/ScoreTrack.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2/IO/ScoreTrack.cpython-38-arm-linux-gnueabihf.so
building 'MACS2.IO.CallPeakUnit' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c MACS2/IO/CallPeakUnit.c -o build/temp.linux-armhf-3.8/MACS2/IO/CallPeakUnit.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.8/MACS2/IO/CallPeakUnit.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2/IO/CallPeakUnit.cpython-38-arm-linux-gnueabihf.so
running build_scripts
creating build/scripts-3.8
copying and adjusting bin/macs2 -> build/scripts-3.8
changing mode of build/scripts-3.8/macs2 from 644 to 755
PYTHONPATH=./.pybuild/cpython3_$(py3versions -v -d)_MACS2/build/ help2man \
--no-discard-stderr --no-info \
--name "macs2 \- Model\-based Analysis for ChIP\-Sequencing" "python3 bin/macs2" > debian/macs2.1
for subcommand in callpeak bdgpeakcall bdgbroadcall bdgcmp bdgopt cmbreps bdgdiff filterdup predictd pileup randsample refinepeak; do printf \
"[NAME]\nmacs2_${subcommand} \- Model\-based Analysis for ChIP\-Sequencing\n" \
> debian/macs2_${subcommand}-man-include; done
for subcommand in callpeak bdgpeakcall bdgbroadcall bdgcmp bdgopt cmbreps bdgdiff filterdup predictd pileup randsample refinepeak; do \
PYTHONPATH=./.pybuild/cpython3_$(py3versions -v -d)_MACS2/build/ help2man \
--no-discard-stderr --no-info --version-string="2.2.7.1" \
--include debian/macs2_${subcommand}-man-include \
"python3 bin/macs2 ${subcommand}" > \
debian/macs2_${subcommand}.1; done
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_test
I: pybuild base:217: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build; python3.8 -m pytest test
============================= test session starts ==============================
platform linux -- Python 3.8.3rc1, pytest-4.6.9, py-1.8.1, pluggy-0.13.0
rootdir: /<<PKGBUILDDIR>>
collected 42 items
test/test_BedGraph.py .... [ 9%]
test/test_FixWidthTrack.py .... [ 19%]
test/test_PairedEndTrack.py .... [ 28%]
test/test_Parser.py ... [ 35%]
test/test_PeakIO.py ... [ 42%]
test/test_Pileup.py .. [ 47%]
test/test_Prob.py ................ [ 85%]
test/test_ScoreTrack.py .... [ 95%]
test/test_Signal.py s. [100%]
===================== 41 passed, 1 skipped in 9.15 seconds =====================
cd test && for PY3VER in 3.8; do \
export PATH=/<<PKGBUILDDIR>>/build/scripts-${PY3VER}:$PATH \
&& export PYTHONPATH=/<<PKGBUILDDIR>>/.pybuild/cpython3_${PY3VER}_MACS2/build \
&& ./cmdlinetest macs2.2.7.1-2-${PY3VER} ; done
1. callpeak
1.1 callpeak narrow
1.2 callpeak broad
1.3 callpeak on PE narrow/broad
2. pileup
3. filterdup
4. predictd
5. randsample
6. refinepeak
7. bdgcmp
8. bdgpeakcall
9. bdgbroadcall
10. bdgdiff
11. cmbreps
12. bdgopt
13. 50k contigs with buffersize
13.1 callpeak
13.2 filterdup
13.3 pileup
13.4 randsample
14. search for errors or warnings in log files
checking macs2.2.7.1-2-3.8_run_50kcontigs/run_callpeak_50kcontigs.log...
... clear!
checking macs2.2.7.1-2-3.8_run_50kcontigs/run_filterdup_50kcontigs.log...
... clear!
checking macs2.2.7.1-2-3.8_run_50kcontigs/run_pileup_ChIP.bed.log...
... clear!
checking macs2.2.7.1-2-3.8_run_50kcontigs/run_randsample.log...
... clear!
checking macs2.2.7.1-2-3.8_run_bdgbroadcall/run_bdgbroadcall_w_prefix.log...
... clear!
checking macs2.2.7.1-2-3.8_run_bdgcmp/run_bdgcmp.log...
... clear!
checking macs2.2.7.1-2-3.8_run_bdgdiff/run_bdgdiff_w_o_file.log...
... clear!
checking macs2.2.7.1-2-3.8_run_bdgdiff/run_bdgdiff_w_prefix.log...
... clear!
checking macs2.2.7.1-2-3.8_run_bdgopt/run_bdgopt_max.log...
... clear!
checking macs2.2.7.1-2-3.8_run_bdgopt/run_bdgopt_min.log...
... clear!
checking macs2.2.7.1-2-3.8_run_bdgpeakcall/run_bdgpeakcall_cutoff.log...
... clear!
checking macs2.2.7.1-2-3.8_run_bdgpeakcall/run_bdgpeakcall_w_prefix.log...
... clear!
checking macs2.2.7.1-2-3.8_run_callpeak_broad/run_callpeak_broad.log...
... clear!
checking macs2.2.7.1-2-3.8_run_callpeak_narrow/run_callpeak_narrow0.log...
... clear!
checking macs2.2.7.1-2-3.8_run_callpeak_narrow/run_callpeak_narrow1.log...
... clear!
checking macs2.2.7.1-2-3.8_run_callpeak_narrow/run_callpeak_narrow2.log...
... clear!
checking macs2.2.7.1-2-3.8_run_callpeak_narrow/run_callpeak_narrow3.log...
... clear!
checking macs2.2.7.1-2-3.8_run_callpeak_narrow/run_callpeak_narrow4.log...
... clear!
checking macs2.2.7.1-2-3.8_run_callpeak_narrow/run_callpeak_narrow5.log...
... clear!
checking macs2.2.7.1-2-3.8_run_callpeak_narrow_revert/run_callpeak_narrow_revert.log...
... clear!
checking macs2.2.7.1-2-3.8_run_callpeak_pe_broad/run_callpeak_bampe_broad.log...
... clear!
checking macs2.2.7.1-2-3.8_run_callpeak_pe_broad/run_callpeak_bedpe_broad.log...
... clear!
checking macs2.2.7.1-2-3.8_run_callpeak_pe_narrow/run_callpeak_bampe_narrow.log...
... clear!
checking macs2.2.7.1-2-3.8_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow.log...
... clear!
checking macs2.2.7.1-2-3.8_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip.log...
... clear!
checking macs2.2.7.1-2-3.8_run_cmbreps/run_cmbreps_fisher.log...
... clear!
checking macs2.2.7.1-2-3.8_run_cmbreps/run_cmbreps_max.log...
... clear!
checking macs2.2.7.1-2-3.8_run_cmbreps/run_cmbreps_mean.log...
... clear!
checking macs2.2.7.1-2-3.8_run_filterdup/run_filterdup.log...
... clear!
checking macs2.2.7.1-2-3.8_run_filterdup/run_filterdup_d.log...
... clear!
checking macs2.2.7.1-2-3.8_run_filterdup/run_filterdup_pe.log...
... clear!
checking macs2.2.7.1-2-3.8_run_filterdup/run_filterdup_pe_d.log...
... clear!
checking macs2.2.7.1-2-3.8_run_pileup/run_pileup_CTRL.bed.log...
... clear!
checking macs2.2.7.1-2-3.8_run_pileup/run_pileup_CTRLPE.bampe.log...
... clear!
checking macs2.2.7.1-2-3.8_run_pileup/run_pileup_CTRLPE.bedpe.log...
... clear!
checking macs2.2.7.1-2-3.8_run_pileup/run_pileup_ChIP.bed.log...
... clear!
checking macs2.2.7.1-2-3.8_run_pileup/run_pileup_ChIPPE.bampe.log...
... clear!
checking macs2.2.7.1-2-3.8_run_pileup/run_pileup_ChIPPE.bedpe.log...
... clear!
checking macs2.2.7.1-2-3.8_run_predictd/run_predictd.log...
... clear!
checking macs2.2.7.1-2-3.8_run_randsample/run_randsample.log...
... clear!
checking macs2.2.7.1-2-3.8_run_randsample/run_randsample_bampe.log...
... clear!
checking macs2.2.7.1-2-3.8_run_randsample/run_randsample_bedpe.log...
... clear!
checking macs2.2.7.1-2-3.8_run_refinepeak/run_refinepeak_w_ofile.log...
... clear!
checking macs2.2.7.1-2-3.8_run_refinepeak/run_refinepeak_w_prefix.log...
... clear!
15. compare with standard outputs
14.1.1 checking 50kcontigs run_callpeak_50kcontigs_peaks.narrowPeak ...
... success!
14.1.2 checking 50kcontigs run_callpeak_50kcontigs_summits.bed ...
... success!
14.1.3 checking 50kcontigs run_filterdup_result.bed ...
... success!
14.1.4 checking 50kcontigs run_pileup_ChIP.bed.bdg ...
... success!
14.2.1 checking bdgbroadcall run_bdgbroadcall_w_prefix_c2.0_C1.50_l200_g30_G800_broad.bed12 ...
... success!
14.3.1 checking bdgcmp run_bdgcmp_FE.bdg ...
... success!
14.3.2 checking bdgcmp run_bdgcmp_ppois.bdg ...
... success!
14.4.1 checking bdgdiff common.bed ...
... success!
14.4.2 checking bdgdiff cond1.bed ...
... success!
14.4.3 checking bdgdiff cond2.bed ...
... success!
14.4.4 checking bdgdiff run_bdgdiff_prefix_c3.0_common.bed ...
... success!
14.4.5 checking bdgdiff run_bdgdiff_prefix_c3.0_cond1.bed ...
... success!
14.4.6 checking bdgdiff run_bdgdiff_prefix_c3.0_cond2.bed ...
... success!
14.5.1 checking bdgpeakcall run_bdgpeakcall_w_prefix_c2.0_l200_g30_peaks.narrowPeak ...
... success!
14.6.1 checking callpeak_broad run_callpeak_broad_control_lambda.bdg ...
... success!
14.6.2 checking callpeak_broad run_callpeak_broad_peaks.broadPeak ...
... success!
14.6.3 checking callpeak_broad run_callpeak_broad_peaks.gappedPeak ...
... success!
14.6.4 checking callpeak_broad run_callpeak_broad_treat_pileup.bdg ...
... success!
14.7.1 checking callpeak_narrow run_callpeak_narrow0_control_lambda.bdg ...
... success!
14.7.2 checking callpeak_narrow run_callpeak_narrow0_peaks.narrowPeak ...
... success!
14.7.3 checking callpeak_narrow run_callpeak_narrow0_summits.bed ...
... success!
14.7.4 checking callpeak_narrow run_callpeak_narrow0_treat_pileup.bdg ...
... success!
14.7.5 checking callpeak_narrow run_callpeak_narrow1_control_lambda.bdg ...
... success!
14.7.6 checking callpeak_narrow run_callpeak_narrow1_peaks.narrowPeak ...
... success!
14.7.7 checking callpeak_narrow run_callpeak_narrow1_summits.bed ...
... success!
14.7.8 checking callpeak_narrow run_callpeak_narrow1_treat_pileup.bdg ...
... success!
14.7.9 checking callpeak_narrow run_callpeak_narrow2_control_lambda.bdg ...
... success!
14.7.10 checking callpeak_narrow run_callpeak_narrow2_peaks.narrowPeak ...
... success!
14.7.11 checking callpeak_narrow run_callpeak_narrow2_summits.bed ...
... success!
14.7.12 checking callpeak_narrow run_callpeak_narrow2_treat_pileup.bdg ...
... success!
14.7.13 checking callpeak_narrow run_callpeak_narrow3_control_lambda.bdg ...
... success!
14.7.14 checking callpeak_narrow run_callpeak_narrow3_peaks.narrowPeak ...
... success!
14.7.15 checking callpeak_narrow run_callpeak_narrow3_summits.bed ...
... success!
14.7.16 checking callpeak_narrow run_callpeak_narrow3_treat_pileup.bdg ...
... success!
14.7.17 checking callpeak_narrow run_callpeak_narrow4_control_lambda.bdg ...
... success!
14.7.18 checking callpeak_narrow run_callpeak_narrow4_peaks.narrowPeak ...
... success!
14.7.19 checking callpeak_narrow run_callpeak_narrow4_summits.bed ...
... success!
14.7.20 checking callpeak_narrow run_callpeak_narrow4_treat_pileup.bdg ...
... success!
14.7.21 checking callpeak_narrow run_callpeak_narrow5_control_lambda.bdg ...
... success!
14.7.22 checking callpeak_narrow run_callpeak_narrow5_peaks.narrowPeak ...
... success!
14.7.23 checking callpeak_narrow run_callpeak_narrow5_summits.bed ...
... success!
14.7.24 checking callpeak_narrow run_callpeak_narrow5_treat_pileup.bdg ...
... success!
14.8.1 checking callpeak_narrow_revert run_callpeak_narrow_revert_control_lambda.bdg ...
... success!
14.8.2 checking callpeak_narrow_revert run_callpeak_narrow_revert_peaks.narrowPeak ...
... success!
14.8.3 checking callpeak_narrow_revert run_callpeak_narrow_revert_summits.bed ...
... success!
14.8.4 checking callpeak_narrow_revert run_callpeak_narrow_revert_treat_pileup.bdg ...
... success!
14.9.1 checking callpeak_pe_broad run_callpeak_bampe_broad_control_lambda.bdg ...
... success!
14.9.2 checking callpeak_pe_broad run_callpeak_bampe_broad_peaks.broadPeak ...
... success!
14.9.3 checking callpeak_pe_broad run_callpeak_bampe_broad_peaks.gappedPeak ...
... success!
14.9.4 checking callpeak_pe_broad run_callpeak_bampe_broad_treat_pileup.bdg ...
... success!
14.9.5 checking callpeak_pe_broad run_callpeak_bedpe_broad_control_lambda.bdg ...
... success!
14.9.6 checking callpeak_pe_broad run_callpeak_bedpe_broad_peaks.broadPeak ...
... success!
14.9.7 checking callpeak_pe_broad run_callpeak_bedpe_broad_peaks.gappedPeak ...
... success!
14.9.8 checking callpeak_pe_broad run_callpeak_bedpe_broad_treat_pileup.bdg ...
... success!
14.10.1 checking callpeak_pe_narrow run_callpeak_bampe_narrow_control_lambda.bdg ...
... success!
14.10.2 checking callpeak_pe_narrow run_callpeak_bampe_narrow_peaks.narrowPeak ...
... success!
14.10.3 checking callpeak_pe_narrow run_callpeak_bampe_narrow_summits.bed ...
... success!
14.10.4 checking callpeak_pe_narrow run_callpeak_bampe_narrow_treat_pileup.bdg ...
... success!
14.10.5 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_control_lambda.bdg ...
... success!
14.10.6 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_peaks.narrowPeak ...
... success!
14.10.7 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_summits.bed ...
... success!
14.10.8 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_treat_pileup.bdg ...
... success!
14.10.9 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_control_lambda.bdg ...
... success!
14.10.10 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_peaks.narrowPeak ...
... success!
14.10.11 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_summits.bed ...
... success!
14.10.12 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_treat_pileup.bdg ...
... success!
14.11.1 checking cmbreps run_cmbreps_fisher.bdg ...
... success!
14.11.2 checking cmbreps run_cmbreps_max.bdg ...
... success!
14.11.3 checking cmbreps run_cmbreps_mean.bdg ...
... success!
14.12.1 checking filterdup run_filterdup_result.bed ...
... success!
14.12.2 checking filterdup run_filterdup_result_pe.bedpe ...
... success!
14.13.1 checking pileup run_pileup_CTRL.bed.bdg ...
... success!
14.13.2 checking pileup run_pileup_CTRLPE.bampe.bdg ...
... success!
14.13.3 checking pileup run_pileup_CTRLPE.bedpe.bdg ...
... success!
14.13.4 checking pileup run_pileup_ChIP.bed.bdg ...
... success!
14.13.5 checking pileup run_pileup_ChIPPE.bampe.bdg ...
... success!
14.13.6 checking pileup run_pileup_ChIPPE.bedpe.bdg ...
... success!
14.14.1 checking refinepeak run_refinepeak_w_ofile.bed ...
... success!
14.14.2 checking refinepeak run_refinepeak_w_prefix_refinepeak.bed ...
... success!
14.15.1 checking bdgopt run_bdgopt_max.bdg ...
... success!
14.15.2 checking bdgopt run_bdgopt_min.bdg ...
... success!
16. brief speed test
CPU time (mm:ss): 00:11:23
Max mem (KB): 243932
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
dh_auto_install -a -O--buildsystem=pybuild
I: pybuild base:217: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/macs
Requirement already satisfied: numpy>=1.17 in /usr/lib/python3/dist-packages (1.17.4)
running install
running build
running build_py
running build_ext
skipping 'MACS2/Prob.c' Cython extension (up-to-date)
skipping 'MACS2/IO/Parser.c' Cython extension (up-to-date)
skipping 'MACS2/Pileup.c' Cython extension (up-to-date)
skipping 'MACS2/PeakModel.c' Cython extension (up-to-date)
skipping 'MACS2/PeakDetect.c' Cython extension (up-to-date)
skipping 'MACS2/Signal.c' Cython extension (up-to-date)
skipping 'MACS2/IO/PeakIO.c' Cython extension (up-to-date)
skipping 'MACS2/IO/BedGraphIO.c' Cython extension (up-to-date)
skipping 'MACS2/IO/FixWidthTrack.c' Cython extension (up-to-date)
skipping 'MACS2/IO/PairedEndTrack.c' Cython extension (up-to-date)
skipping 'MACS2/IO/BedGraph.c' Cython extension (up-to-date)
skipping 'MACS2/IO/ScoreTrack.c' Cython extension (up-to-date)
skipping 'MACS2/IO/CallPeakUnit.c' Cython extension (up-to-date)
running build_scripts
running install_lib
creating /<<PKGBUILDDIR>>/debian/macs/usr
creating /<<PKGBUILDDIR>>/debian/macs/usr/lib
creating /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8
creating /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages
creating /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2/Constants.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2/OptValidator.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2/OutputWriter.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2/__init__.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2/bdgbroadcall_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2/bdgcmp_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2/bdgdiff_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2/bdgopt_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2/bdgpeakcall_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2/callpeak_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2/cmbreps_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2/diffpeak_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2/filterdup_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2/pileup_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2/predictd_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2/randsample_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2/refinepeak_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2
creating /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2/IO/__init__.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2/IO/Parser.cpython-38-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2/IO/PeakIO.cpython-38-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2/IO/BedGraphIO.cpython-38-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2/IO/FixWidthTrack.cpython-38-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2/IO/PairedEndTrack.cpython-38-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2/IO/BedGraph.cpython-38-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2/IO/ScoreTrack.cpython-38-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2/IO/CallPeakUnit.cpython-38-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2/IO
creating /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2/IO/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2/IO/__pycache__/__init__.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2/IO/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2/cPosValCalculation.pxd -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2/khash.pxd -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2/Prob.cpython-38-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2/Pileup.cpython-38-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2/PeakModel.cpython-38-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2/PeakDetect.cpython-38-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2/Signal.cpython-38-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2
creating /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2/__pycache__/__init__.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2/__pycache__/Constants.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2/__pycache__/callpeak_cmd.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2/__pycache__/OptValidator.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2/__pycache__/OutputWriter.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2/__pycache__/pileup_cmd.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2/__pycache__/filterdup_cmd.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2/__pycache__/predictd_cmd.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2/__pycache__/randsample_cmd.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2/__pycache__/refinepeak_cmd.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2/__pycache__/bdgcmp_cmd.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2/__pycache__/bdgpeakcall_cmd.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2/__pycache__/bdgbroadcall_cmd.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2/__pycache__/bdgdiff_cmd.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2/__pycache__/cmbreps_cmd.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_MACS2/build/MACS2/__pycache__/bdgopt_cmd.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2/__pycache__
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2/Constants.py to Constants.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2/OptValidator.py to OptValidator.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2/OutputWriter.py to OutputWriter.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2/bdgbroadcall_cmd.py to bdgbroadcall_cmd.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2/bdgcmp_cmd.py to bdgcmp_cmd.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2/bdgdiff_cmd.py to bdgdiff_cmd.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2/bdgopt_cmd.py to bdgopt_cmd.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2/bdgpeakcall_cmd.py to bdgpeakcall_cmd.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2/callpeak_cmd.py to callpeak_cmd.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2/cmbreps_cmd.py to cmbreps_cmd.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2/diffpeak_cmd.py to diffpeak_cmd.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2/filterdup_cmd.py to filterdup_cmd.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2/pileup_cmd.py to pileup_cmd.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2/predictd_cmd.py to predictd_cmd.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2/randsample_cmd.py to randsample_cmd.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2/refinepeak_cmd.py to refinepeak_cmd.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2/IO/__init__.py to __init__.cpython-38.pyc
running install_egg_info
running egg_info
creating MACS2.egg-info
writing MACS2.egg-info/PKG-INFO
writing dependency_links to MACS2.egg-info/dependency_links.txt
writing requirements to MACS2.egg-info/requires.txt
writing top-level names to MACS2.egg-info/top_level.txt
writing manifest file 'MACS2.egg-info/SOURCES.txt'
reading manifest file 'MACS2.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no previously-included files found matching '.gitignore'
warning: no previously-included files found matching '.travis.yml'
no previously-included directories found matching '.github'
no previously-included directories found matching 'DOCKER'
writing manifest file 'MACS2.egg-info/SOURCES.txt'
Copying MACS2.egg-info to /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.8/dist-packages/MACS2-2.2.7.1.egg-info
Skipping SOURCES.txt
running install_scripts
creating /<<PKGBUILDDIR>>/debian/macs/usr/bin
copying build/scripts-3.8/macs2 -> /<<PKGBUILDDIR>>/debian/macs/usr/bin
changing mode of /<<PKGBUILDDIR>>/debian/macs/usr/bin/macs2 to 755
dh_installdocs -a -O--buildsystem=pybuild
dh_installchangelogs -a -O--buildsystem=pybuild
dh_installexamples -a -O--buildsystem=pybuild
dh_installman -a -O--buildsystem=pybuild
dh_python3 -a -O--buildsystem=pybuild
dh_installinit -a -O--buildsystem=pybuild
dh_installsystemduser -a -O--buildsystem=pybuild
dh_lintian -a -O--buildsystem=pybuild
dh_perl -a -O--buildsystem=pybuild
dh_link -a -O--buildsystem=pybuild
dh_strip_nondeterminism -a -O--buildsystem=pybuild
dh_compress -a -O--buildsystem=pybuild
dh_fixperms -a -O--buildsystem=pybuild
dh_missing -a -O--buildsystem=pybuild
dh_dwz -a -O--buildsystem=pybuild
dh_strip -a -O--buildsystem=pybuild
dh_makeshlibs -a -O--buildsystem=pybuild
dh_shlibdeps -a -O--buildsystem=pybuild
dh_installdeb -a -O--buildsystem=pybuild
dh_gencontrol -a -O--buildsystem=pybuild
dpkg-gencontrol: warning: package macs: substitution variable ${python3:Versions} unused, but is defined
dpkg-gencontrol: warning: package macs: substitution variable ${python3:Versions} unused, but is defined
dh_md5sums -a -O--buildsystem=pybuild
dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'macs-dbgsym' in '../macs-dbgsym_2.2.7.1-2_armhf.deb'.
dpkg-deb: building package 'macs' in '../macs_2.2.7.1-2_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../macs_2.2.7.1-2_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-source: info: using options from macs-2.2.7.1/debian/source/options: --extend-diff-ignore=(^|/)(.*\.c)$|.*[.]egg-info/
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2020-05-10T00:31:26Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
macs_2.2.7.1-2_armhf.changes:
-----------------------------
Format: 1.8
Date: Mon, 27 Apr 2020 19:31:48 +0200
Source: macs
Binary: macs macs-dbgsym
Architecture: armhf
Version: 2.2.7.1-2
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Michael R. Crusoe <michael.crusoe@gmail.com>
Description:
macs - Model-based Analysis of ChIP-Seq on short reads sequencers
Changes:
macs (2.2.7.1-2) unstable; urgency=medium
.
* Ensure that debian/rules clean always suceeds. Closes #958109
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+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
macs-dbgsym_2.2.7.1-2_armhf.deb
-------------------------------
new Debian package, version 2.0.
size 7474356 bytes: control archive=1192 bytes.
855 bytes, 12 lines control
1462 bytes, 14 lines md5sums
Package: macs-dbgsym
Source: macs
Version: 2.2.7.1-2
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 7776
Depends: macs (= 2.2.7.1-2)
Section: debug
Priority: optional
Description: debug symbols for macs
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-rw-r--r-- root/root 276620 2020-04-27 17:31 ./usr/lib/debug/.build-id/e4/22c319052fde88ded9a23bfa9b3c0f2ab52f11.debug
drwxr-xr-x root/root 0 2020-04-27 17:31 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root 0 2020-04-27 17:31 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root 25284 2020-04-27 17:31 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/macs.debug
drwxr-xr-x root/root 0 2020-04-27 17:31 ./usr/share/
drwxr-xr-x root/root 0 2020-04-27 17:31 ./usr/share/doc/
lrwxrwxrwx root/root 0 2020-04-27 17:31 ./usr/share/doc/macs-dbgsym -> macs
macs_2.2.7.1-2_armhf.deb
------------------------
new Debian package, version 2.0.
size 2510724 bytes: control archive=2920 bytes.
955 bytes, 18 lines control
5242 bytes, 60 lines md5sums
233 bytes, 12 lines * postinst #!/bin/sh
382 bytes, 12 lines * prerm #!/bin/sh
Package: macs
Version: 2.2.7.1-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 5745
Depends: python3 (<< 3.9), python3 (>= 3.8~), python3-numpy, python3:any, libc6 (>= 2.15)
Section: science
Priority: optional
Homepage: https://github.com/taoliu/MACS/
Description: Model-based Analysis of ChIP-Seq on short reads sequencers
MACS empirically models the length of the sequenced ChIP fragments, which
tends to be shorter than sonication or library construction size estimates,
and uses it to improve the spatial resolution of predicted binding sites.
MACS also uses a dynamic Poisson distribution to effectively capture local
biases in the genome sequence, allowing for more sensitive and robust
prediction. MACS compares favorably to existing ChIP-Seq peak-finding
algorithms, is publicly available open source, and can be used for ChIP-Seq
with or without control samples.
drwxr-xr-x root/root 0 2020-04-27 17:31 ./
drwxr-xr-x root/root 0 2020-04-27 17:31 ./usr/
drwxr-xr-x root/root 0 2020-04-27 17:31 ./usr/bin/
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-rw-r--r-- root/root 30146 2020-04-27 17:31 ./usr/lib/python3/dist-packages/MACS2-2.2.7.1.egg-info/PKG-INFO
-rw-r--r-- root/root 1 2020-04-27 17:31 ./usr/lib/python3/dist-packages/MACS2-2.2.7.1.egg-info/dependency_links.txt
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-rw-r--r-- root/root 6 2020-04-27 17:31 ./usr/lib/python3/dist-packages/MACS2-2.2.7.1.egg-info/top_level.txt
drwxr-xr-x root/root 0 2020-04-27 17:31 ./usr/lib/python3/dist-packages/MACS2/
-rw-r--r-- root/root 845 2020-04-12 00:00 ./usr/lib/python3/dist-packages/MACS2/Constants.py
drwxr-xr-x root/root 0 2020-04-27 17:31 ./usr/lib/python3/dist-packages/MACS2/IO/
-rw-r--r-- root/root 427336 2020-04-27 17:31 ./usr/lib/python3/dist-packages/MACS2/IO/BedGraph.cpython-38-arm-linux-gnueabihf.so
-rw-r--r-- root/root 81820 2020-04-27 17:31 ./usr/lib/python3/dist-packages/MACS2/IO/BedGraphIO.cpython-38-arm-linux-gnueabihf.so
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-rw-r--r-- root/root 274656 2020-04-27 17:31 ./usr/lib/python3/dist-packages/MACS2/IO/PairedEndTrack.cpython-38-arm-linux-gnueabihf.so
-rw-r--r-- root/root 520292 2020-04-27 17:31 ./usr/lib/python3/dist-packages/MACS2/IO/Parser.cpython-38-arm-linux-gnueabihf.so
-rw-r--r-- root/root 559524 2020-04-27 17:31 ./usr/lib/python3/dist-packages/MACS2/IO/PeakIO.cpython-38-arm-linux-gnueabihf.so
-rw-r--r-- root/root 672748 2020-04-27 17:31 ./usr/lib/python3/dist-packages/MACS2/IO/ScoreTrack.cpython-38-arm-linux-gnueabihf.so
-rw-r--r-- root/root 0 2020-04-12 00:00 ./usr/lib/python3/dist-packages/MACS2/IO/__init__.py
-rw-r--r-- root/root 28454 2020-04-12 00:00 ./usr/lib/python3/dist-packages/MACS2/OptValidator.py
-rw-r--r-- root/root 10842 2020-04-12 00:00 ./usr/lib/python3/dist-packages/MACS2/OutputWriter.py
-rw-r--r-- root/root 129268 2020-04-27 17:31 ./usr/lib/python3/dist-packages/MACS2/PeakDetect.cpython-38-arm-linux-gnueabihf.so
-rw-r--r-- root/root 244888 2020-04-27 17:31 ./usr/lib/python3/dist-packages/MACS2/PeakModel.cpython-38-arm-linux-gnueabihf.so
-rw-r--r-- root/root 235424 2020-04-27 17:31 ./usr/lib/python3/dist-packages/MACS2/Pileup.cpython-38-arm-linux-gnueabihf.so
-rw-r--r-- root/root 115864 2020-04-27 17:31 ./usr/lib/python3/dist-packages/MACS2/Prob.cpython-38-arm-linux-gnueabihf.so
-rw-r--r-- root/root 154916 2020-04-27 17:31 ./usr/lib/python3/dist-packages/MACS2/Signal.cpython-38-arm-linux-gnueabihf.so
-rw-r--r-- root/root 24 2020-04-12 00:00 ./usr/lib/python3/dist-packages/MACS2/__init__.py
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-rw-r--r-- root/root 3712 2020-04-12 00:00 ./usr/lib/python3/dist-packages/MACS2/bdgcmp_cmd.py
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-rw-r--r-- root/root 2696 2020-04-12 00:00 ./usr/lib/python3/dist-packages/MACS2/bdgpeakcall_cmd.py
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-rw-r--r-- root/root 3178 2020-04-12 00:00 ./usr/lib/python3/dist-packages/MACS2/predictd_cmd.py
-rw-r--r-- root/root 3888 2020-04-12 00:00 ./usr/lib/python3/dist-packages/MACS2/randsample_cmd.py
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-rw-r--r-- root/root 3361 2020-04-13 08:02 ./usr/share/doc/macs/copyright
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+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 1478916
Build-Time: 4306
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 768
Job: macs_2.2.7.1-2
Machine Architecture: armhf
Package: macs
Package-Time: 5167
Source-Version: 2.2.7.1-2
Space: 1478916
Status: successful
Version: 2.2.7.1-2
--------------------------------------------------------------------------------
Finished at 2020-05-10T00:31:26Z
Build needed 01:26:07, 1478916k disc space