macs →
2.2.4-1 →
armhf → 2019-10-06 08:21:15
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on testwandboard
+==============================================================================+
| macs 2.2.4-1 (armhf) Sun, 06 Oct 2019 07:45:44 +0000 |
+==============================================================================+
Package: macs
Version: 2.2.4-1
Source Version: 2.2.4-1
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-57686c65-cde9-4bbf-9aea-1e958b3c6de7' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.5 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.9 MB]
Fetched 24.4 MB in 30s (813 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'macs' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/macs.git
Please use:
git clone https://salsa.debian.org/med-team/macs.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 3326 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main macs 2.2.4-1 (dsc) [2048 B]
Get:2 http://172.17.0.1/private bullseye-staging/main macs 2.2.4-1 (tar) [2058 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main macs 2.2.4-1 (diff) [1266 kB]
Fetched 3326 kB in 1s (2715 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/macs-S0RPL0/macs-2.2.4' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/macs-S0RPL0' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-MOWmzH/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-MOWmzH/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-MOWmzH/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-MOWmzH/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-MOWmzH/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-MOWmzH/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-MOWmzH/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-MOWmzH/apt_archive ./ Packages [429 B]
Fetched 2105 B in 1s (2544 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 18 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-MOWmzH/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12177 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 12), dh-python, python3-dev, python3-numpy, python3-setuptools, help2man, cython3
Filtered Build-Depends: debhelper-compat (= 12), dh-python, python3-dev, python3-numpy, python3-setuptools, help2man, cython3
dpkg-deb: building package 'sbuild-build-depends-macs-dummy' in '/<<BUILDDIR>>/resolver-MOWmzH/apt_archive/sbuild-build-depends-macs-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-macs-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-MOWmzH/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-MOWmzH/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-MOWmzH/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-MOWmzH/apt_archive ./ Sources [526 B]
Get:5 copy:/<<BUILDDIR>>/resolver-MOWmzH/apt_archive ./ Packages [603 B]
Fetched 2462 B in 1s (3051 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install macs build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cython3 debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext
gettext-base groff-base help2man intltool-debian libarchive-zip-perl
libblas3 libbsd0 libcroco3 libdebhelper-perl libelf1 libexpat1 libexpat1-dev
libfile-stripnondeterminism-perl libgfortran5 libglib2.0-0 libicu63
liblapack3 libmagic-mgc libmagic1 libmpdec2 libncurses6 libpipeline1
libpython3-dev libpython3-stdlib libpython3.7 libpython3.7-dev
libpython3.7-minimal libpython3.7-stdlib libsigsegv2 libssl1.1
libsub-override-perl libtinfo5 libtool libuchardet0 libxml2 m4 man-db
mime-support po-debconf python3 python3-dev python3-distutils
python3-lib2to3 python3-minimal python3-numpy python3-pkg-resources
python3-setuptools python3.7 python3.7-dev python3.7-minimal sensible-utils
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation cython-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev
groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less
www-browser libmail-box-perl python3-doc python3-tk python3-venv gfortran
python-numpy-doc python3-pytest python3-numpy-dbg python-setuptools-doc
python3.7-venv python3.7-doc binfmt-support
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs libgpm2 libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cython3 debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext
gettext-base groff-base help2man intltool-debian libarchive-zip-perl
libblas3 libbsd0 libcroco3 libdebhelper-perl libelf1 libexpat1 libexpat1-dev
libfile-stripnondeterminism-perl libgfortran5 libglib2.0-0 libicu63
liblapack3 libmagic-mgc libmagic1 libmpdec2 libncurses6 libpipeline1
libpython3-dev libpython3-stdlib libpython3.7 libpython3.7-dev
libpython3.7-minimal libpython3.7-stdlib libsigsegv2 libssl1.1
libsub-override-perl libtinfo5 libtool libuchardet0 libxml2 m4 man-db
mime-support po-debconf python3 python3-dev python3-distutils
python3-lib2to3 python3-minimal python3-numpy python3-pkg-resources
python3-setuptools python3.7 python3.7-dev python3.7-minimal
sbuild-build-depends-macs-dummy sensible-utils
0 upgraded, 65 newly installed, 0 to remove and 18 not upgraded.
Need to get 72.4 MB of archives.
After this operation, 191 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-MOWmzH/apt_archive ./ sbuild-build-depends-macs-dummy 0.invalid.0 [892 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libtinfo5 armhf 6.1+20190803-1 [314 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-3 [782 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.1-2 [26.6 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.8.7-3 [1254 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf libssl1.1 armhf 1.1.1d-1 [1269 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-minimal armhf 3.7.5~rc1-1 [584 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.7-2 [77.3 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf python3.7-minimal armhf 3.7.5~rc1-1 [1526 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf python3-minimal armhf 3.7.3-1 [36.6 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf mime-support all 3.63 [37.7 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf libmpdec2 armhf 2.4.2-2 [67.2 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-stdlib armhf 3.7.5~rc1-1 [1667 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf python3.7 armhf 3.7.5~rc1-1 [347 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf libpython3-stdlib armhf 3.7.3-1 [20.0 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf python3 armhf 3.7.3-1 [61.5 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12 [15.8 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.37-5 [253 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.37-5 [111 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.37-5 [66.2 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-9 [117 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-2 [185 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-9 [434 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf cython3 armhf 0.29.2-2 [1299 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-11 [547 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.65-1 [95.8 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.6.0-1 [23.3 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.6.0-1 [14.3 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-1 [69.7 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 12.6.1 [172 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.60.6-2 [1109 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf libicu63 armhf 63.2-2 [7974 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.4+dfsg1-7+b2 [571 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf libncurses6 armhf 6.1+20190803-1 [79.3 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-9 [1219 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 12.6.1 [993 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf python3-lib2to3 all 3.7.4-3 [78.2 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf python3-distutils all 3.7.4-3 [145 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf dh-python all 4.20190722 [99.5 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf help2man armhf 1.47.11 [180 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf libgfortran5 armhf 9.2.1-8+rpi1 [231 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf libblas3 armhf 3.8.0-2 [103 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf libexpat1-dev armhf 2.2.7-2 [128 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf liblapack3 armhf 3.8.0-2 [1493 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7 armhf 3.7.5~rc1-1 [1253 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-dev armhf 3.7.5~rc1-1 [40.2 MB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf libpython3-dev armhf 3.7.3-1 [20.1 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf python3.7-dev armhf 3.7.5~rc1-1 [514 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf python3-dev armhf 3.7.3-1 [1264 B]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf python3-pkg-resources all 41.2.0-1 [154 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf python3-numpy armhf 1:1.16.5-1 [1908 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf python3-setuptools all 41.2.0-1 [307 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up libpython3.7-minimal:armhf (3.7.5~rc1-1) ...
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Setting up python3-minimal (3.7.3-1) ...
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Unpacking gettext (0.19.8.1-9) ...
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Unpacking sbuild-build-depends-macs-dummy (0.invalid.0) ...
Setting up libpipeline1:armhf (1.5.1-2) ...
Setting up mime-support (3.63) ...
Setting up libmagic-mgc (1:5.37-5) ...
Setting up libarchive-zip-perl (1.65-1) ...
Setting up libglib2.0-0:armhf (2.60.6-2) ...
No schema files found: doing nothing.
Setting up libdebhelper-perl (12.6.1) ...
Setting up libmagic1:armhf (1:5.37-5) ...
Setting up gettext-base (0.19.8.1-9) ...
Setting up file (1:5.37-5) ...
Setting up libicu63:armhf (63.2-2) ...
Setting up help2man (1.47.11) ...
Setting up autotools-dev (20180224.1) ...
Setting up libexpat1-dev:armhf (2.2.7-2) ...
Setting up libncurses6:armhf (6.1+20190803-1) ...
Setting up libsigsegv2:armhf (2.12-2) ...
Setting up autopoint (0.19.8.1-9) ...
Setting up libgfortran5:armhf (9.2.1-8+rpi1) ...
Setting up sensible-utils (0.0.12) ...
Setting up libuchardet0:armhf (0.0.6-3) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libmpdec2:armhf (2.4.2-2) ...
Setting up libbsd0:armhf (0.10.0-1) ...
Setting up libtinfo5:armhf (6.1+20190803-1) ...
Setting up libelf1:armhf (0.176-1.1) ...
Setting up libxml2:armhf (2.9.4+dfsg1-7+b2) ...
Setting up libfile-stripnondeterminism-perl (1.6.0-1) ...
Setting up libpython3.7-stdlib:armhf (3.7.5~rc1-1) ...
Setting up libpython3.7:armhf (3.7.5~rc1-1) ...
Setting up libtool (2.4.6-11) ...
Setting up libpython3.7-dev:armhf (3.7.5~rc1-1) ...
Setting up m4 (1.4.18-2) ...
Setting up libblas3:armhf (3.8.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libcroco3:armhf (0.6.13-1) ...
Setting up autoconf (2.69-11) ...
Setting up dwz (0.13-1) ...
Setting up groff-base (1.22.4-3) ...
Setting up libpython3-stdlib:armhf (3.7.3-1) ...
Setting up automake (1:1.16.1-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up python3.7 (3.7.5~rc1-1) ...
Setting up liblapack3:armhf (3.8.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up gettext (0.19.8.1-9) ...
Setting up libpython3-dev:armhf (3.7.3-1) ...
Setting up python3 (3.7.3-1) ...
Setting up man-db (2.8.7-3) ...
Not building database; man-db/auto-update is not 'true'.
Setting up python3.7-dev (3.7.5~rc1-1) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up cython3 (0.29.2-2) ...
Setting up python3-lib2to3 (3.7.4-3) ...
Setting up python3-pkg-resources (41.2.0-1) ...
Setting up python3-distutils (3.7.4-3) ...
Setting up dh-python (4.20190722) ...
Setting up python3-setuptools (41.2.0-1) ...
Setting up po-debconf (1.0.21) ...
Setting up python3-dev (3.7.3-1) ...
Setting up python3-numpy (1:1.16.5-1) ...
Setting up dh-autoreconf (19) ...
Setting up dh-strip-nondeterminism (1.6.0-1) ...
Setting up debhelper (12.6.1) ...
Setting up sbuild-build-depends-macs-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.29-1+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.32.51.20190909-1+rpi1 dpkg-dev_1.19.7 g++-9_9.2.1-8+rpi1 gcc-9_9.2.1-8+rpi1 libc6-dev_2.29-1+rpi1 libstdc++-9-dev_9.2.1-8+rpi1 libstdc++6_9.2.1-8+rpi1 linux-libc-dev_4.18.20-2+rpi1+b1
Package versions: adduser_3.118 apt_1.8.3 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.46 bash_5.0-4 binutils_2.32.51.20190909-1+rpi1 binutils-arm-linux-gnueabihf_2.32.51.20190909-1+rpi1 binutils-common_2.32.51.20190909-1+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 coreutils_8.30-3 cpp_4:9.2.1-3+rpi1 cpp-9_9.2.1-8+rpi1 cython3_0.29.2-2 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.6.1 debianutils_4.9 dh-autoreconf_19 dh-python_4.20190722 dh-strip-nondeterminism_1.6.0-1 diffutils_1:3.7-3 dirmngr_2.2.17-3+b1 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-1 e2fsprogs_1.45.3-4 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.37-5 findutils_4.7.0-1 g++_4:9.2.1-3+rpi1 g++-9_9.2.1-8+rpi1 gcc_4:9.2.1-3+rpi1 gcc-4.9-base_4.9.4-2+rpi1+b19 gcc-5-base_5.5.0-8 gcc-6-base_6.5.0-1+rpi1+b3 gcc-7-base_7.4.0-13+rpi1+b1 gcc-9_9.2.1-8+rpi1 gcc-9-base_9.2.1-8+rpi1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gnupg_2.2.17-3 gnupg-l10n_2.2.17-3 gnupg-utils_2.2.17-3+b1 gpg_2.2.17-3+b1 gpg-agent_2.2.17-3+b1 gpg-wks-client_2.2.17-3+b1 gpg-wks-server_2.2.17-3+b1 gpgconf_2.2.17-3+b1 gpgsm_2.2.17-3+b1 gpgv_2.2.17-3+b1 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3 help2man_1.47.11 hostname_3.22 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-4 libapt-pkg5.0_1.8.3 libarchive-zip-perl_1.65-1 libasan5_9.2.1-8+rpi1 libassuan0_2.5.3-7 libatomic1_9.2.1-8+rpi1 libattr1_1:2.4.48-4 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2 libbinutils_2.32.51.20190909-1+rpi1 libblas3_3.8.0-2 libblkid1_2.34-0.1 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.29-1+rpi1 libc-dev-bin_2.29-1+rpi1 libc6_2.29-1+rpi1 libc6-dev_2.29-1+rpi1 libcap-ng0_0.7.9-2 libcc1-0_9.2.1-8+rpi1 libcom-err2_1.45.3-4 libcroco3_0.6.13-1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.249 libdebhelper-perl_12.6.1 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libexpat1_2.2.7-2 libexpat1-dev_2.2.7-2 libext2fs2_1.45.3-4 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.6.0-1 libgcc-9-dev_9.2.1-8+rpi1 libgcc1_1:9.2.1-8+rpi1 libgcrypt20_1.8.5-2 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libgfortran5_9.2.1-8+rpi1 libglib2.0-0_2.60.6-2 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.9-5 libgomp1_9.2.1-8+rpi1 libgpg-error0_1.36-7 libhogweed4_3.4.1-1 libicu63_63.2-2 libidn2-0_2.2.0-2 libisl19_0.20-2 libisl21_0.21-2 libksba8_1.3.5-2 liblapack3_3.8.0-2 libldap-2.4-2_2.4.48+dfsg-1 libldap-common_2.4.48+dfsg-1 liblocale-gettext-perl_1.07-3+b3 liblz4-1_1.8.3-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.37-5 libmagic1_1:5.37-5 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.2-1 libncurses6_6.1+20190803-1 libncursesw6_6.1+20190803-1 libnettle6_3.4.1-1 libnpth0_1.6-1 libp11-kit0_0.23.16.1-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.32-5 libpcre3_2:8.39-12 libperl5.28_5.28.1-6 libpipeline1_1.5.1-2 libpython3-dev_3.7.3-1 libpython3-stdlib_3.7.3-1 libpython3.7_3.7.5~rc1-1 libpython3.7-dev_3.7.5~rc1-1 libpython3.7-minimal_3.7.5~rc1-1 libpython3.7-stdlib_3.7.5~rc1-1 libreadline7_7.0-5 libreadline8_8.0-3 libsasl2-2_2.1.27+dfsg-1+b1 libsasl2-modules-db_2.1.27+dfsg-1+b1 libseccomp2_2.4.1-2+rpi1 libselinux1_2.9-2 libsemanage-common_2.9-3 libsemanage1_2.9-3 libsepol1_2.9-2 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libsqlite3-0_3.29.0-2 libss2_1.45.3-4 libssl1.1_1.1.1d-1 libstdc++-9-dev_9.2.1-8+rpi1 libstdc++6_9.2.1-8+rpi1 libsub-override-perl_0.09-2 libsystemd0_242-7+rpi1 libtasn1-6_4.14-2 libtext-charwidth-perl_0.04-8 libtext-iconv-perl_1.7-6 libtext-wrapi18n-perl_0.06-8 libtinfo5_6.1+20190803-1 libtinfo6_6.1+20190803-1 libtool_2.4.6-11 libubsan1_9.2.1-8+rpi1 libuchardet0_0.0.6-3 libudev1_242-7+rpi1 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libxml2_2.9.4+dfsg1-7+b2 libzstd1_1.4.3+dfsg-1+rpi1 linux-libc-dev_4.18.20-2+rpi1+b1 login_1:4.7-2 logsave_1.45.3-4 lsb-base_11.1.0+rpi1 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.7-3 mawk_1.3.3-17 mime-support_3.63 mount_2.34-0.1 ncurses-base_6.1+20190803-1 ncurses-bin_6.1+20190803-1 netbase_5.6 passwd_1:4.7-2 patch_2.7.6-6 perl_5.28.1-6 perl-base_5.28.1-6 perl-modules-5.28_5.28.1-6 pinentry-curses_1.1.0-3 po-debconf_1.0.21 python3_3.7.3-1 python3-dev_3.7.3-1 python3-distutils_3.7.4-3 python3-lib2to3_3.7.4-3 python3-minimal_3.7.3-1 python3-numpy_1:1.16.5-1 python3-pkg-resources_41.2.0-1 python3-setuptools_41.2.0-1 python3.7_3.7.5~rc1-1 python3.7-dev_3.7.5~rc1-1 python3.7-minimal_3.7.5~rc1-1 raspbian-archive-keyring_20120528.2 readline-common_8.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-macs-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.96~beta-1 tar_1.30+dfsg-6 tzdata_2019c-1 util-linux_2.34-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Thu Oct 3 19:33:15 2019 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./macs_2.2.4-1.dsc
dpkg-source: info: extracting macs in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking macs_2.2.4.orig.tar.gz
dpkg-source: info: unpacking macs_2.2.4-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying spelling
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-57686c65-cde9-4bbf-9aea-1e958b3c6de7
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package macs
dpkg-buildpackage: info: source version 2.2.4-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
dpkg-source: info: using options from macs-2.2.4/debian/source/options: --extend-diff-ignore=(^|/)(.*\.c)$
fakeroot debian/rules clean
dh clean --with python3 --buildsystem=pybuild
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
I: pybuild base:217: python3.7 setup.py clean
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.7' does not exist -- can't clean it
rm -f debian/*.1 debian/*-man-include
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules build-arch
dh build-arch --with python3 --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:217: python3.7 setup.py config
running config
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
#for pyx in `find MACS2/ -name "*.pyx" | grep -v khash`; do \
# rm -f ${pyx%%.pyx}.{h,c}; touch ${pyx}; done
dh_auto_build
I: pybuild base:217: /usr/bin/python3 setup.py build
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2
copying MACS2/refinepeak_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2
copying MACS2/bdgdiff_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2
copying MACS2/diffpeak_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2
copying MACS2/bdgpeakcall_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2
copying MACS2/OutputWriter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2
copying MACS2/OptValidator.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2
copying MACS2/callpeak_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2
copying MACS2/filterdup_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2
copying MACS2/bdgcmp_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2
copying MACS2/bdgbroadcall_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2
copying MACS2/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2
copying MACS2/bdgopt_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2
copying MACS2/cmbreps_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2
copying MACS2/Constants.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2
copying MACS2/randsample_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2
copying MACS2/predictd_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2
copying MACS2/pileup_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2/IO
copying MACS2/IO/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2/IO
copying MACS2/cPosValCalculation.pxd -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2
copying MACS2/khash.pxd -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2
running build_ext
skipping 'MACS2/Prob.c' Cython extension (up-to-date)
building 'MACS2.Prob' extension
creating build
creating build/temp.linux-armhf-3.7
creating build/temp.linux-armhf-3.7/MACS2
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c MACS2/Prob.c -o build/temp.linux-armhf-3.7/MACS2/Prob.o -w -O3 -ffast-math -g0
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.7/MACS2/Prob.o -lm -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2/Prob.cpython-37m-arm-linux-gnueabihf.so
skipping 'MACS2/IO/Parser.c' Cython extension (up-to-date)
building 'MACS2.IO.Parser' extension
creating build/temp.linux-armhf-3.7/MACS2/IO
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c MACS2/IO/Parser.c -o build/temp.linux-armhf-3.7/MACS2/IO/Parser.o -w -O3 -ffast-math -g0
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.7/MACS2/IO/Parser.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2/IO/Parser.cpython-37m-arm-linux-gnueabihf.so
skipping 'MACS2/Pileup.c' Cython extension (up-to-date)
building 'MACS2.Pileup' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c MACS2/Pileup.c -o build/temp.linux-armhf-3.7/MACS2/Pileup.o -w -O3 -ffast-math -g0
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c MACS2/cPosValCalculation.c -o build/temp.linux-armhf-3.7/MACS2/cPosValCalculation.o -w -O3 -ffast-math -g0
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.7/MACS2/Pileup.o build/temp.linux-armhf-3.7/MACS2/cPosValCalculation.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2/Pileup.cpython-37m-arm-linux-gnueabihf.so
skipping 'MACS2/PeakModel.c' Cython extension (up-to-date)
building 'MACS2.PeakModel' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c MACS2/PeakModel.c -o build/temp.linux-armhf-3.7/MACS2/PeakModel.o -w -O3 -ffast-math -g0
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.7/MACS2/PeakModel.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2/PeakModel.cpython-37m-arm-linux-gnueabihf.so
skipping 'MACS2/PeakDetect.c' Cython extension (up-to-date)
building 'MACS2.PeakDetect' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c MACS2/PeakDetect.c -o build/temp.linux-armhf-3.7/MACS2/PeakDetect.o -w -O3 -ffast-math -g0
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.7/MACS2/PeakDetect.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2/PeakDetect.cpython-37m-arm-linux-gnueabihf.so
skipping 'MACS2/Signal.c' Cython extension (up-to-date)
building 'MACS2.Signal' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c MACS2/Signal.c -o build/temp.linux-armhf-3.7/MACS2/Signal.o -w -O3 -ffast-math -g0
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.7/MACS2/Signal.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2/Signal.cpython-37m-arm-linux-gnueabihf.so
skipping 'MACS2/IO/PeakIO.c' Cython extension (up-to-date)
building 'MACS2.IO.PeakIO' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c MACS2/IO/PeakIO.c -o build/temp.linux-armhf-3.7/MACS2/IO/PeakIO.o -w -O3 -ffast-math -g0
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.7/MACS2/IO/PeakIO.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2/IO/PeakIO.cpython-37m-arm-linux-gnueabihf.so
skipping 'MACS2/IO/BedGraphIO.c' Cython extension (up-to-date)
building 'MACS2.IO.BedGraphIO' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c MACS2/IO/BedGraphIO.c -o build/temp.linux-armhf-3.7/MACS2/IO/BedGraphIO.o -w -O3 -ffast-math -g0
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.7/MACS2/IO/BedGraphIO.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2/IO/BedGraphIO.cpython-37m-arm-linux-gnueabihf.so
skipping 'MACS2/IO/FixWidthTrack.c' Cython extension (up-to-date)
building 'MACS2.IO.FixWidthTrack' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c MACS2/IO/FixWidthTrack.c -o build/temp.linux-armhf-3.7/MACS2/IO/FixWidthTrack.o -w -O3 -ffast-math -g0
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.7/MACS2/IO/FixWidthTrack.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2/IO/FixWidthTrack.cpython-37m-arm-linux-gnueabihf.so
skipping 'MACS2/IO/PairedEndTrack.c' Cython extension (up-to-date)
building 'MACS2.IO.PairedEndTrack' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c MACS2/IO/PairedEndTrack.c -o build/temp.linux-armhf-3.7/MACS2/IO/PairedEndTrack.o -w -O3 -ffast-math -g0
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.7/MACS2/IO/PairedEndTrack.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2/IO/PairedEndTrack.cpython-37m-arm-linux-gnueabihf.so
skipping 'MACS2/IO/BedGraph.c' Cython extension (up-to-date)
building 'MACS2.IO.BedGraph' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c MACS2/IO/BedGraph.c -o build/temp.linux-armhf-3.7/MACS2/IO/BedGraph.o -w -O3 -ffast-math -g0
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.7/MACS2/IO/BedGraph.o -lm -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2/IO/BedGraph.cpython-37m-arm-linux-gnueabihf.so
skipping 'MACS2/IO/ScoreTrack.c' Cython extension (up-to-date)
building 'MACS2.IO.ScoreTrack' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c MACS2/IO/ScoreTrack.c -o build/temp.linux-armhf-3.7/MACS2/IO/ScoreTrack.o -w -O3 -ffast-math -g0
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.7/MACS2/IO/ScoreTrack.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2/IO/ScoreTrack.cpython-37m-arm-linux-gnueabihf.so
cythoning MACS2/IO/CallPeakUnit.pyx to MACS2/IO/CallPeakUnit.c
building 'MACS2.IO.CallPeakUnit' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c MACS2/IO/CallPeakUnit.c -o build/temp.linux-armhf-3.7/MACS2/IO/CallPeakUnit.o -w -O3 -ffast-math -g0
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.7/MACS2/IO/CallPeakUnit.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2/IO/CallPeakUnit.cpython-37m-arm-linux-gnueabihf.so
skipping 'MACS2/hashtable.c' Cython extension (up-to-date)
building 'MACS2.hashtable' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS2/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c MACS2/hashtable.c -o build/temp.linux-armhf-3.7/MACS2/hashtable.o -w -O3 -ffast-math -g0
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.7/MACS2/hashtable.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2/hashtable.cpython-37m-arm-linux-gnueabihf.so
skipping 'MACS2/Statistics.c' Cython extension (up-to-date)
building 'MACS2.Statistics' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS2/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c MACS2/Statistics.c -o build/temp.linux-armhf-3.7/MACS2/Statistics.o -w -O3 -ffast-math -g0
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.7/MACS2/Statistics.o -lm -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2/Statistics.cpython-37m-arm-linux-gnueabihf.so
running build_scripts
creating build/scripts-3.7
copying and adjusting bin/macs2 -> build/scripts-3.7
changing mode of build/scripts-3.7/macs2 from 664 to 775
PYTHONPATH=./.pybuild/pythonX.Y_*/build/ help2man \
--no-discard-stderr --no-info \
--name "macs2 \- Model\-based Analysis for ChIP\-Sequencing" "python3 bin/macs2" > debian/macs2.1
for subcommand in callpeak bdgpeakcall bdgbroadcall bdgcmp bdgopt cmbreps bdgdiff filterdup predictd pileup randsample refinepeak; do printf \
"[NAME]\nmacs2_${subcommand} \- Model\-based Analysis for ChIP\-Sequencing\n" \
> debian/macs2_${subcommand}-man-include; done
for subcommand in callpeak bdgpeakcall bdgbroadcall bdgcmp bdgopt cmbreps bdgdiff filterdup predictd pileup randsample refinepeak; do \
PYTHONPATH=./.pybuild/pythonX.Y_*/build/ help2man \
--no-discard-stderr --no-info --version-string="2.2.4" \
--include debian/macs2_${subcommand}-man-include \
"python3 bin/macs2 ${subcommand}" > \
debian/macs2_${subcommand}.1; done
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:217: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build; python3.7 -m unittest discover -v
----------------------------------------------------------------------
Ran 0 tests in 0.000s
OK
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch --with python3 --buildsystem=pybuild
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
dh_auto_install -a -O--buildsystem=pybuild
I: pybuild base:217: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/macs
running install
running build
running build_py
running build_ext
skipping 'MACS2/Prob.c' Cython extension (up-to-date)
skipping 'MACS2/IO/Parser.c' Cython extension (up-to-date)
skipping 'MACS2/Pileup.c' Cython extension (up-to-date)
skipping 'MACS2/PeakModel.c' Cython extension (up-to-date)
skipping 'MACS2/PeakDetect.c' Cython extension (up-to-date)
skipping 'MACS2/Signal.c' Cython extension (up-to-date)
skipping 'MACS2/IO/PeakIO.c' Cython extension (up-to-date)
skipping 'MACS2/IO/BedGraphIO.c' Cython extension (up-to-date)
skipping 'MACS2/IO/FixWidthTrack.c' Cython extension (up-to-date)
skipping 'MACS2/IO/PairedEndTrack.c' Cython extension (up-to-date)
skipping 'MACS2/IO/BedGraph.c' Cython extension (up-to-date)
skipping 'MACS2/IO/ScoreTrack.c' Cython extension (up-to-date)
skipping 'MACS2/IO/CallPeakUnit.c' Cython extension (up-to-date)
skipping 'MACS2/hashtable.c' Cython extension (up-to-date)
skipping 'MACS2/Statistics.c' Cython extension (up-to-date)
running build_scripts
running install_lib
creating /<<PKGBUILDDIR>>/debian/macs/usr
creating /<<PKGBUILDDIR>>/debian/macs/usr/lib
creating /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.7
creating /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.7/dist-packages
creating /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2/refinepeak_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2/bdgdiff_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2/diffpeak_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2/bdgpeakcall_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2/OutputWriter.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2/OptValidator.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2/callpeak_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2/filterdup_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2/bdgcmp_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2/bdgbroadcall_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2/__init__.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2/bdgopt_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2/cmbreps_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2/Constants.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2/randsample_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2/predictd_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2/pileup_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.7/dist-packages/MACS2
creating /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.7/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2/IO/__init__.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.7/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2/IO/Parser.cpython-37m-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.7/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2/IO/PeakIO.cpython-37m-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.7/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2/IO/BedGraphIO.cpython-37m-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.7/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2/IO/FixWidthTrack.cpython-37m-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.7/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2/IO/PairedEndTrack.cpython-37m-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.7/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2/IO/BedGraph.cpython-37m-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.7/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2/IO/ScoreTrack.cpython-37m-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.7/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2/IO/CallPeakUnit.cpython-37m-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.7/dist-packages/MACS2/IO
creating /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.7/dist-packages/MACS2/IO/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2/IO/__pycache__/__init__.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.7/dist-packages/MACS2/IO/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2/cPosValCalculation.pxd -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2/khash.pxd -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2/Prob.cpython-37m-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2/Pileup.cpython-37m-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2/PeakModel.cpython-37m-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2/PeakDetect.cpython-37m-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2/Signal.cpython-37m-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2/hashtable.cpython-37m-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2/Statistics.cpython-37m-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.7/dist-packages/MACS2
creating /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.7/dist-packages/MACS2/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_MACS2/build/MACS2/__pycache__/__init__.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.7/dist-packages/MACS2/__pycache__
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.7/dist-packages/MACS2/refinepeak_cmd.py to refinepeak_cmd.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.7/dist-packages/MACS2/bdgdiff_cmd.py to bdgdiff_cmd.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.7/dist-packages/MACS2/diffpeak_cmd.py to diffpeak_cmd.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.7/dist-packages/MACS2/bdgpeakcall_cmd.py to bdgpeakcall_cmd.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.7/dist-packages/MACS2/OutputWriter.py to OutputWriter.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.7/dist-packages/MACS2/OptValidator.py to OptValidator.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.7/dist-packages/MACS2/callpeak_cmd.py to callpeak_cmd.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.7/dist-packages/MACS2/filterdup_cmd.py to filterdup_cmd.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.7/dist-packages/MACS2/bdgcmp_cmd.py to bdgcmp_cmd.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.7/dist-packages/MACS2/bdgbroadcall_cmd.py to bdgbroadcall_cmd.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.7/dist-packages/MACS2/__init__.py to __init__.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.7/dist-packages/MACS2/bdgopt_cmd.py to bdgopt_cmd.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.7/dist-packages/MACS2/cmbreps_cmd.py to cmbreps_cmd.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.7/dist-packages/MACS2/Constants.py to Constants.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.7/dist-packages/MACS2/randsample_cmd.py to randsample_cmd.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.7/dist-packages/MACS2/predictd_cmd.py to predictd_cmd.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.7/dist-packages/MACS2/pileup_cmd.py to pileup_cmd.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.7/dist-packages/MACS2/IO/__init__.py to __init__.cpython-37.pyc
running install_egg_info
running egg_info
writing MACS2.egg-info/PKG-INFO
writing dependency_links to MACS2.egg-info/dependency_links.txt
writing requirements to MACS2.egg-info/requires.txt
writing top-level names to MACS2.egg-info/top_level.txt
reading manifest file 'MACS2.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no previously-included files found matching '.gitignore'
warning: no previously-included files found matching '.travis.yml'
no previously-included directories found matching 'test'
no previously-included directories found matching '.github'
no previously-included directories found matching 'DOCKER'
writing manifest file 'MACS2.egg-info/SOURCES.txt'
Copying MACS2.egg-info to /<<PKGBUILDDIR>>/debian/macs/usr/lib/python3.7/dist-packages/MACS2-2.2.4.egg-info
Skipping SOURCES.txt
running install_scripts
creating /<<PKGBUILDDIR>>/debian/macs/usr/bin
copying build/scripts-3.7/macs2 -> /<<PKGBUILDDIR>>/debian/macs/usr/bin
changing mode of /<<PKGBUILDDIR>>/debian/macs/usr/bin/macs2 to 775
dh_installdocs -a -O--buildsystem=pybuild
dh_installchangelogs -a -O--buildsystem=pybuild
dh_installexamples -a -O--buildsystem=pybuild
dh_installman -a -O--buildsystem=pybuild
dh_python3 -a -O--buildsystem=pybuild
dh_installinit -a -O--buildsystem=pybuild
dh_installsystemduser -a -O--buildsystem=pybuild
dh_lintian -a -O--buildsystem=pybuild
dh_perl -a -O--buildsystem=pybuild
dh_link -a -O--buildsystem=pybuild
dh_strip_nondeterminism -a -O--buildsystem=pybuild
dh_compress -a -O--buildsystem=pybuild
dh_fixperms -a -O--buildsystem=pybuild
dh_missing -a -O--buildsystem=pybuild
dh_dwz -a -O--buildsystem=pybuild
dwz: debian/macs/usr/lib/python3/dist-packages/MACS2/IO/BedGraph.cpython-37m-arm-linux-gnueabihf.so: .debug_info section not present
dwz: debian/macs/usr/lib/python3/dist-packages/MACS2/IO/BedGraphIO.cpython-37m-arm-linux-gnueabihf.so: .debug_info section not present
dwz: debian/macs/usr/lib/python3/dist-packages/MACS2/IO/CallPeakUnit.cpython-37m-arm-linux-gnueabihf.so: .debug_info section not present
dwz: debian/macs/usr/lib/python3/dist-packages/MACS2/IO/FixWidthTrack.cpython-37m-arm-linux-gnueabihf.so: .debug_info section not present
dwz: debian/macs/usr/lib/python3/dist-packages/MACS2/IO/PairedEndTrack.cpython-37m-arm-linux-gnueabihf.so: .debug_info section not present
dwz: debian/macs/usr/lib/python3/dist-packages/MACS2/IO/Parser.cpython-37m-arm-linux-gnueabihf.so: .debug_info section not present
dwz: debian/macs/usr/lib/python3/dist-packages/MACS2/IO/PeakIO.cpython-37m-arm-linux-gnueabihf.so: .debug_info section not present
dwz: debian/macs/usr/lib/python3/dist-packages/MACS2/IO/ScoreTrack.cpython-37m-arm-linux-gnueabihf.so: .debug_info section not present
dwz: debian/macs/usr/lib/python3/dist-packages/MACS2/PeakDetect.cpython-37m-arm-linux-gnueabihf.so: .debug_info section not present
dwz: debian/macs/usr/lib/python3/dist-packages/MACS2/PeakModel.cpython-37m-arm-linux-gnueabihf.so: .debug_info section not present
dwz: debian/macs/usr/lib/python3/dist-packages/MACS2/Pileup.cpython-37m-arm-linux-gnueabihf.so: .debug_info section not present
dwz: debian/macs/usr/lib/python3/dist-packages/MACS2/Prob.cpython-37m-arm-linux-gnueabihf.so: .debug_info section not present
dwz: debian/macs/usr/lib/python3/dist-packages/MACS2/Signal.cpython-37m-arm-linux-gnueabihf.so: .debug_info section not present
dwz: debian/macs/usr/lib/python3/dist-packages/MACS2/Statistics.cpython-37m-arm-linux-gnueabihf.so: .debug_info section not present
dwz: debian/macs/usr/lib/python3/dist-packages/MACS2/hashtable.cpython-37m-arm-linux-gnueabihf.so: .debug_info section not present
dwz: Too few files for multifile optimization
dh_dwz: No dwz multifile created, but not explicitly requested either so ignoring it.
dh_dwz: Common issues include no debug information at all (missing -g) and
dh_dwz: compressed debug information (#931891).
dh_strip -a -O--buildsystem=pybuild
dh_makeshlibs -a -O--buildsystem=pybuild
dh_shlibdeps -a -O--buildsystem=pybuild
dh_installdeb -a -O--buildsystem=pybuild
dh_gencontrol -a -O--buildsystem=pybuild
dpkg-gencontrol: warning: package macs: substitution variable ${python3:Versions} unused, but is defined
dpkg-gencontrol: warning: package macs: substitution variable ${python3:Versions} unused, but is defined
dh_md5sums -a -O--buildsystem=pybuild
dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'macs' in '../macs_2.2.4-1_armhf.deb'.
dpkg-deb: building package 'macs-dbgsym' in '../macs-dbgsym_2.2.4-1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../macs_2.2.4-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-source: info: using options from macs-2.2.4/debian/source/options: --extend-diff-ignore=(^|/)(.*\.c)$
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2019-10-06T08:21:07Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
macs_2.2.4-1_armhf.changes:
---------------------------
Format: 1.8
Date: Thu, 03 Oct 2019 21:18:16 +0200
Source: macs
Binary: macs macs-dbgsym
Architecture: armhf
Version: 2.2.4-1
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
macs - Model-based Analysis of ChIP-Seq on short reads sequencers
Closes: 936976
Changes:
macs (2.2.4-1) unstable; urgency=medium
.
* New upstream version
* Standards-Version: 4.4.1
* Build with Python3
Closes: #936976
Checksums-Sha1:
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Files:
a82404bc0c8e479fde1ec0e183e21822 74076 debug optional macs-dbgsym_2.2.4-1_armhf.deb
1a3d0a7a7697002e7f94326f319e6c62 5435 science optional macs_2.2.4-1_armhf.buildinfo
c396d457bd70033ac739c6ceecc0a172 2417080 science optional macs_2.2.4-1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
macs-dbgsym_2.2.4-1_armhf.deb
-----------------------------
new Debian package, version 2.0.
size 74076 bytes: control archive=1236 bytes.
932 bytes, 12 lines control
1590 bytes, 15 lines md5sums
Package: macs-dbgsym
Source: macs
Version: 2.2.4-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 529
Depends: macs (= 2.2.4-1)
Section: debug
Priority: optional
Description: debug symbols for macs
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lrwxrwxrwx root/root 0 2019-10-03 19:18 ./usr/share/doc/macs-dbgsym -> macs
macs_2.2.4-1_armhf.deb
----------------------
new Debian package, version 2.0.
size 2417080 bytes: control archive=2976 bytes.
953 bytes, 18 lines control
5478 bytes, 62 lines md5sums
234 bytes, 12 lines * postinst #!/bin/sh
383 bytes, 12 lines * prerm #!/bin/sh
Package: macs
Version: 2.2.4-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 5812
Depends: python3 (<< 3.8), python3 (>= 3.7~), python3-numpy, python3:any, libc6 (>= 2.15)
Section: science
Priority: optional
Homepage: https://github.com/taoliu/MACS/
Description: Model-based Analysis of ChIP-Seq on short reads sequencers
MACS empirically models the length of the sequenced ChIP fragments, which
tends to be shorter than sonication or library construction size estimates,
and uses it to improve the spatial resolution of predicted binding sites.
MACS also uses a dynamic Poisson distribution to effectively capture local
biases in the genome sequence, allowing for more sensitive and robust
prediction. MACS compares favorably to existing ChIP-Seq peak-finding
algorithms, is publicly available open source, and can be used for ChIP-Seq
with or without control samples.
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| Post Build |
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| Cleanup |
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Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
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| Summary |
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Build Architecture: armhf
Build-Space: 37468
Build-Time: 1555
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 504
Job: macs_2.2.4-1
Machine Architecture: armhf
Package: macs
Package-Time: 2123
Source-Version: 2.2.4-1
Space: 37468
Status: successful
Version: 2.2.4-1
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Finished at 2019-10-06T08:21:07Z
Build needed 00:35:23, 37468k disc space