macs →
2.1.4-1 →
armhf → 2019-10-03 09:57:10
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on testwandboard
+==============================================================================+
| macs 2.1.4-1 (armhf) Thu, 03 Oct 2019 09:12:33 +0000 |
+==============================================================================+
Package: macs
Version: 2.1.4-1
Source Version: 2.1.4-1
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-d57174d3-9fdb-42b8-83e4-4751d55b7c2a' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.5 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.9 MB]
Fetched 24.4 MB in 29s (831 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'macs' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/macs.git
Please use:
git clone https://salsa.debian.org/med-team/macs.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 3109 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main macs 2.1.4-1 (dsc) [2023 B]
Get:2 http://172.17.0.1/private bullseye-staging/main macs 2.1.4-1 (tar) [1841 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main macs 2.1.4-1 (diff) [1266 kB]
Fetched 3109 kB in 1s (2091 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/macs-ANrKsR/macs-2.1.4' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/macs-ANrKsR' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-PZY2HZ/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-PZY2HZ/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-PZY2HZ/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-PZY2HZ/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-PZY2HZ/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-PZY2HZ/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-PZY2HZ/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-PZY2HZ/apt_archive ./ Packages [431 B]
Fetched 2107 B in 1s (2609 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 14 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-PZY2HZ/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (5198 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12177 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 12), dh-python, python-all-dev, python-numpy, python-setuptools, help2man, cython
Filtered Build-Depends: debhelper-compat (= 12), dh-python, python-all-dev, python-numpy, python-setuptools, help2man, cython
dpkg-deb: building package 'sbuild-build-depends-macs-dummy' in '/<<BUILDDIR>>/resolver-PZY2HZ/apt_archive/sbuild-build-depends-macs-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-macs-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-PZY2HZ/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-PZY2HZ/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-PZY2HZ/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-PZY2HZ/apt_archive ./ Sources [526 B]
Get:5 copy:/<<BUILDDIR>>/resolver-PZY2HZ/apt_archive ./ Packages [606 B]
Fetched 2465 B in 1s (3279 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install macs build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cython debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext
gettext-base groff-base help2man intltool-debian libarchive-zip-perl
libblas3 libbsd0 libcroco3 libdebhelper-perl libelf1 libexpat1 libexpat1-dev
libfile-stripnondeterminism-perl libgfortran5 libglib2.0-0 libicu63
liblapack3 libmagic-mgc libmagic1 libmpdec2 libncurses6 libpipeline1
libpython-all-dev libpython-dev libpython-stdlib libpython2-dev
libpython2-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal
libpython2.7-stdlib libpython3-stdlib libpython3.7-minimal
libpython3.7-stdlib libsigsegv2 libssl1.1 libsub-override-perl libtinfo5
libtool libuchardet0 libxml2 m4 man-db mime-support po-debconf python
python-all python-all-dev python-dev python-minimal python-numpy
python-pkg-resources python-setuptools python2 python2-dev python2-minimal
python2.7 python2.7-dev python2.7-minimal python3 python3-distutils
python3-lib2to3 python3-minimal python3.7 python3.7-minimal sensible-utils
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation cython-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev
groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less
www-browser libmail-box-perl python-doc python-tk gfortran python-pytest
python-numpy-dbg python-numpy-doc python-setuptools-doc python2-doc
python2.7-doc binfmt-support python3-doc python3-tk python3-venv
python3.7-venv python3.7-doc
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs libgpm2 libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cython debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext
gettext-base groff-base help2man intltool-debian libarchive-zip-perl
libblas3 libbsd0 libcroco3 libdebhelper-perl libelf1 libexpat1 libexpat1-dev
libfile-stripnondeterminism-perl libgfortran5 libglib2.0-0 libicu63
liblapack3 libmagic-mgc libmagic1 libmpdec2 libncurses6 libpipeline1
libpython-all-dev libpython-dev libpython-stdlib libpython2-dev
libpython2-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal
libpython2.7-stdlib libpython3-stdlib libpython3.7-minimal
libpython3.7-stdlib libsigsegv2 libssl1.1 libsub-override-perl libtinfo5
libtool libuchardet0 libxml2 m4 man-db mime-support po-debconf python
python-all python-all-dev python-dev python-minimal python-numpy
python-pkg-resources python-setuptools python2 python2-dev python2-minimal
python2.7 python2.7-dev python2.7-minimal python3 python3-distutils
python3-lib2to3 python3-minimal python3.7 python3.7-minimal
sbuild-build-depends-macs-dummy sensible-utils
0 upgraded, 80 newly installed, 0 to remove and 14 not upgraded.
Need to get 66.3 MB of archives.
After this operation, 188 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-PZY2HZ/apt_archive ./ sbuild-build-depends-macs-dummy 0.invalid.0 [896 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libtinfo5 armhf 6.1+20190803-1 [314 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-3 [782 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.1-2 [26.6 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.8.7-3 [1254 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf libpython2.7-minimal armhf 2.7.16-4 [395 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf python2.7-minimal armhf 2.7.16-4 [1090 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf python2-minimal armhf 2.7.16-1 [41.4 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf python-minimal armhf 2.7.16-1 [21.0 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf libssl1.1 armhf 1.1.1d-1 [1269 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf mime-support all 3.63 [37.7 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.7-2 [77.3 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf libpython2.7-stdlib armhf 2.7.16-4 [1844 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf python2.7 armhf 2.7.16-4 [305 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf libpython2-stdlib armhf 2.7.16-1 [20.8 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf libpython-stdlib armhf 2.7.16-1 [20.8 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf python2 armhf 2.7.16-1 [41.6 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf python armhf 2.7.16-1 [22.8 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-minimal armhf 3.7.4-4 [584 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf python3.7-minimal armhf 3.7.4-4 [1462 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf python3-minimal armhf 3.7.3-1 [36.6 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf libmpdec2 armhf 2.4.2-2 [67.2 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-stdlib armhf 3.7.4-4 [1672 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf python3.7 armhf 3.7.4-4 [340 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf libpython3-stdlib armhf 3.7.3-1 [20.0 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf python3 armhf 3.7.3-1 [61.5 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12 [15.8 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.37-5 [253 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.37-5 [111 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.37-5 [66.2 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-9 [117 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-2 [185 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-9 [434 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf cython armhf 0.29.2-2 [1277 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-11 [547 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.65-1 [95.8 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.6.0-1 [23.3 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.6.0-1 [14.3 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-1 [69.7 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 12.6.1 [172 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.60.6-2 [1109 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf libicu63 armhf 63.2-2 [7974 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.4+dfsg1-7+b2 [571 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf libncurses6 armhf 6.1+20190803-1 [79.3 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-9 [1219 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 12.6.1 [993 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf python3-lib2to3 all 3.7.4-3 [78.2 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf python3-distutils all 3.7.4-3 [145 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf dh-python all 4.20190722 [99.5 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf help2man armhf 1.47.11 [180 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf libgfortran5 armhf 9.2.1-8+rpi1 [231 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf libblas3 armhf 3.8.0-2 [103 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf libexpat1-dev armhf 2.2.7-2 [128 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf liblapack3 armhf 3.8.0-2 [1493 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf libpython2.7 armhf 2.7.16-4 [872 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf libpython2.7-dev armhf 2.7.16-4 [30.9 MB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf libpython2-dev armhf 2.7.16-1 [20.9 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf libpython-dev armhf 2.7.16-1 [20.9 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf libpython-all-dev armhf 2.7.16-1 [1064 B]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf python-all armhf 2.7.16-1 [1044 B]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf python2.7-dev armhf 2.7.16-4 [284 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf python2-dev armhf 2.7.16-1 [1216 B]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf python-dev armhf 2.7.16-1 [1192 B]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf python-all-dev armhf 2.7.16-1 [1068 B]
Get:78 http://172.17.0.1/private bullseye-staging/main armhf python-pkg-resources all 41.2.0-1 [183 kB]
Get:79 http://172.17.0.1/private bullseye-staging/main armhf python-numpy armhf 1:1.16.5-1 [1918 kB]
Get:80 http://172.17.0.1/private bullseye-staging/main armhf python-setuptools all 41.2.0-1 [384 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Selecting previously unselected package libbsd0:armhf.
(Reading database ... 12177 files and directories currently installed.)
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Unpacking mime-support (3.63) ...
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W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.32.51.20190909-1+rpi1 dpkg-dev_1.19.7 g++-9_9.2.1-8+rpi1 gcc-9_9.2.1-8+rpi1 libc6-dev_2.29-1+rpi1 libstdc++-9-dev_9.2.1-8+rpi1 libstdc++6_9.2.1-8+rpi1 linux-libc-dev_4.18.20-2+rpi1+b1
Package versions: adduser_3.118 apt_1.8.3 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.46 bash_5.0-4 binutils_2.32.51.20190909-1+rpi1 binutils-arm-linux-gnueabihf_2.32.51.20190909-1+rpi1 binutils-common_2.32.51.20190909-1+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 coreutils_8.30-3 cpp_4:9.2.1-3+rpi1 cpp-9_9.2.1-8+rpi1 cython_0.29.2-2 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.6.1 debianutils_4.9 dh-autoreconf_19 dh-python_4.20190722 dh-strip-nondeterminism_1.6.0-1 diffutils_1:3.7-3 dirmngr_2.2.17-3+b1 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-1 e2fsprogs_1.45.3-4 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.37-5 findutils_4.7.0-1 g++_4:9.2.1-3+rpi1 g++-9_9.2.1-8+rpi1 gcc_4:9.2.1-3+rpi1 gcc-4.9-base_4.9.4-2+rpi1+b19 gcc-5-base_5.5.0-8 gcc-6-base_6.5.0-1+rpi1+b3 gcc-7-base_7.4.0-13+rpi1+b1 gcc-9_9.2.1-8+rpi1 gcc-9-base_9.2.1-8+rpi1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gnupg_2.2.17-3 gnupg-l10n_2.2.17-3 gnupg-utils_2.2.17-3+b1 gpg_2.2.17-3+b1 gpg-agent_2.2.17-3+b1 gpg-wks-client_2.2.17-3+b1 gpg-wks-server_2.2.17-3+b1 gpgconf_2.2.17-3+b1 gpgsm_2.2.17-3+b1 gpgv_2.2.17-3+b1 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3 help2man_1.47.11 hostname_3.22 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-4 libapt-pkg5.0_1.8.3 libarchive-zip-perl_1.65-1 libasan5_9.2.1-8+rpi1 libassuan0_2.5.3-7 libatomic1_9.2.1-8+rpi1 libattr1_1:2.4.48-4 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2 libbinutils_2.32.51.20190909-1+rpi1 libblas3_3.8.0-2 libblkid1_2.34-0.1 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.29-1+rpi1 libc-dev-bin_2.29-1+rpi1 libc6_2.29-1+rpi1 libc6-dev_2.29-1+rpi1 libcap-ng0_0.7.9-2 libcc1-0_9.2.1-8+rpi1 libcom-err2_1.45.3-4 libcroco3_0.6.13-1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.249 libdebhelper-perl_12.6.1 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libexpat1_2.2.7-2 libexpat1-dev_2.2.7-2 libext2fs2_1.45.3-4 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.6.0-1 libgcc-9-dev_9.2.1-8+rpi1 libgcc1_1:9.2.1-8+rpi1 libgcrypt20_1.8.5-2 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libgfortran5_9.2.1-8+rpi1 libglib2.0-0_2.60.6-2 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.9-5 libgomp1_9.2.1-8+rpi1 libgpg-error0_1.36-7 libhogweed4_3.4.1-1 libicu63_63.2-2 libidn2-0_2.2.0-2 libisl19_0.20-2 libisl21_0.21-2 libksba8_1.3.5-2 liblapack3_3.8.0-2 libldap-2.4-2_2.4.48+dfsg-1 libldap-common_2.4.48+dfsg-1 liblocale-gettext-perl_1.07-3+b3 liblz4-1_1.8.3-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.37-5 libmagic1_1:5.37-5 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.2-1 libncurses6_6.1+20190803-1 libncursesw6_6.1+20190803-1 libnettle6_3.4.1-1 libnpth0_1.6-1 libp11-kit0_0.23.16.1-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.32-5 libpcre3_2:8.39-12 libperl5.28_5.28.1-6 libpipeline1_1.5.1-2 libpython-all-dev_2.7.16-1 libpython-dev_2.7.16-1 libpython-stdlib_2.7.16-1 libpython2-dev_2.7.16-1 libpython2-stdlib_2.7.16-1 libpython2.7_2.7.16-4 libpython2.7-dev_2.7.16-4 libpython2.7-minimal_2.7.16-4 libpython2.7-stdlib_2.7.16-4 libpython3-stdlib_3.7.3-1 libpython3.7-minimal_3.7.4-4 libpython3.7-stdlib_3.7.4-4 libreadline7_7.0-5 libreadline8_8.0-3 libsasl2-2_2.1.27+dfsg-1+b1 libsasl2-modules-db_2.1.27+dfsg-1+b1 libseccomp2_2.4.1-2+rpi1 libselinux1_2.9-2 libsemanage-common_2.9-3 libsemanage1_2.9-3 libsepol1_2.9-2 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libsqlite3-0_3.29.0-2 libss2_1.45.3-4 libssl1.1_1.1.1d-1 libstdc++-9-dev_9.2.1-8+rpi1 libstdc++6_9.2.1-8+rpi1 libsub-override-perl_0.09-2 libsystemd0_242-7+rpi1 libtasn1-6_4.14-2 libtext-charwidth-perl_0.04-8 libtext-iconv-perl_1.7-6 libtext-wrapi18n-perl_0.06-8 libtinfo5_6.1+20190803-1 libtinfo6_6.1+20190803-1 libtool_2.4.6-11 libubsan1_9.2.1-8+rpi1 libuchardet0_0.0.6-3 libudev1_242-7+rpi1 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libxml2_2.9.4+dfsg1-7+b2 libzstd1_1.4.3+dfsg-1+rpi1 linux-libc-dev_4.18.20-2+rpi1+b1 login_1:4.7-2 logsave_1.45.3-4 lsb-base_11.1.0+rpi1 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.7-3 mawk_1.3.3-17 mime-support_3.63 mount_2.34-0.1 ncurses-base_6.1+20190803-1 ncurses-bin_6.1+20190803-1 netbase_5.6 passwd_1:4.7-2 patch_2.7.6-6 perl_5.28.1-6 perl-base_5.28.1-6 perl-modules-5.28_5.28.1-6 pinentry-curses_1.1.0-3 po-debconf_1.0.21 python_2.7.16-1 python-all_2.7.16-1 python-all-dev_2.7.16-1 python-dev_2.7.16-1 python-minimal_2.7.16-1 python-numpy_1:1.16.5-1 python-pkg-resources_41.2.0-1 python-setuptools_41.2.0-1 python2_2.7.16-1 python2-dev_2.7.16-1 python2-minimal_2.7.16-1 python2.7_2.7.16-4 python2.7-dev_2.7.16-4 python2.7-minimal_2.7.16-4 python3_3.7.3-1 python3-distutils_3.7.4-3 python3-lib2to3_3.7.4-3 python3-minimal_3.7.3-1 python3.7_3.7.4-4 python3.7-minimal_3.7.4-4 raspbian-archive-keyring_20120528.2 readline-common_8.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-macs-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.96~beta-1 tar_1.30+dfsg-6 tzdata_2019c-1 util-linux_2.34-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Tue Oct 1 10:41:45 2019 UTC
gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./macs_2.1.4-1.dsc
dpkg-source: info: extracting macs in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking macs_2.1.4.orig.tar.gz
dpkg-source: info: unpacking macs_2.1.4-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying spelling
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-d57174d3-9fdb-42b8-83e4-4751d55b7c2a
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package macs
dpkg-buildpackage: info: source version 2.1.4-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
dpkg-source: info: using options from macs-2.1.4/debian/source/options: --extend-diff-ignore=(^|/)(.*\.c)$
fakeroot debian/rules clean
dh clean --with python2 --buildsystem=pybuild
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
I: pybuild base:217: python2.7 setup.py clean
Compiling MACS2/IO/CallPeakUnit.pyx because it changed.
[1/1] Cythonizing MACS2/IO/CallPeakUnit.pyx
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-2.7' does not exist -- can't clean it
rm -f debian/*.1 debian/*-man-include
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules build-arch
dh build-arch --with python2 --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:217: python2.7 setup.py config
running config
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
#for pyx in `find MACS2/ -name "*.pyx" | grep -v khash`; do \
# rm -f ${pyx%%.pyx}.{h,c}; touch ${pyx}; done
dh_auto_build
I: pybuild base:217: /usr/bin/python setup.py build
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build/MACS2
copying MACS2/refinepeak_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build/MACS2
copying MACS2/bdgdiff_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build/MACS2
copying MACS2/diffpeak_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build/MACS2
copying MACS2/bdgpeakcall_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build/MACS2
copying MACS2/OutputWriter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build/MACS2
copying MACS2/OptValidator.py -> /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build/MACS2
copying MACS2/callpeak_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build/MACS2
copying MACS2/filterdup_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build/MACS2
copying MACS2/bdgcmp_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build/MACS2
copying MACS2/bdgbroadcall_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build/MACS2
copying MACS2/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build/MACS2
copying MACS2/bdgopt_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build/MACS2
copying MACS2/cmbreps_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build/MACS2
copying MACS2/Constants.py -> /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build/MACS2
copying MACS2/randsample_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build/MACS2
copying MACS2/predictd_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build/MACS2
copying MACS2/pileup_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build/MACS2
creating /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build/MACS2/IO
copying MACS2/IO/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build/MACS2/IO
running build_ext
building 'MACS2.Prob' extension
creating build
creating build/temp.linux-armhf-2.7
creating build/temp.linux-armhf-2.7/MACS2
arm-linux-gnueabihf-gcc -pthread -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/Prob.c -o build/temp.linux-armhf-2.7/MACS2/Prob.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-D6QB9m/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC build/temp.linux-armhf-2.7/MACS2/Prob.o -lm -o /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build/MACS2/Prob.so
building 'MACS2.IO.Parser' extension
creating build/temp.linux-armhf-2.7/MACS2/IO
arm-linux-gnueabihf-gcc -pthread -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/IO/Parser.c -o build/temp.linux-armhf-2.7/MACS2/IO/Parser.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-D6QB9m/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC build/temp.linux-armhf-2.7/MACS2/IO/Parser.o -o /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build/MACS2/IO/Parser.so
building 'MACS2.Pileup' extension
arm-linux-gnueabihf-gcc -pthread -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./MACS2 -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/Pileup.c -o build/temp.linux-armhf-2.7/MACS2/Pileup.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./MACS2 -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/cPosValCalculation.c -o build/temp.linux-armhf-2.7/MACS2/cPosValCalculation.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-D6QB9m/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC build/temp.linux-armhf-2.7/MACS2/Pileup.o build/temp.linux-armhf-2.7/MACS2/cPosValCalculation.o -o /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build/MACS2/Pileup.so
building 'MACS2.PeakModel' extension
arm-linux-gnueabihf-gcc -pthread -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/PeakModel.c -o build/temp.linux-armhf-2.7/MACS2/PeakModel.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-D6QB9m/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC build/temp.linux-armhf-2.7/MACS2/PeakModel.o -o /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build/MACS2/PeakModel.so
building 'MACS2.PeakDetect' extension
arm-linux-gnueabihf-gcc -pthread -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c MACS2/PeakDetect.c -o build/temp.linux-armhf-2.7/MACS2/PeakDetect.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-D6QB9m/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC build/temp.linux-armhf-2.7/MACS2/PeakDetect.o -o /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build/MACS2/PeakDetect.so
building 'MACS2.Signal' extension
arm-linux-gnueabihf-gcc -pthread -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/Signal.c -o build/temp.linux-armhf-2.7/MACS2/Signal.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-D6QB9m/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC build/temp.linux-armhf-2.7/MACS2/Signal.o -o /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build/MACS2/Signal.so
building 'MACS2.IO.PeakIO' extension
arm-linux-gnueabihf-gcc -pthread -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c MACS2/IO/PeakIO.c -o build/temp.linux-armhf-2.7/MACS2/IO/PeakIO.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-D6QB9m/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC build/temp.linux-armhf-2.7/MACS2/IO/PeakIO.o -o /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build/MACS2/IO/PeakIO.so
building 'MACS2.IO.BedGraphIO' extension
arm-linux-gnueabihf-gcc -pthread -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c MACS2/IO/BedGraphIO.c -o build/temp.linux-armhf-2.7/MACS2/IO/BedGraphIO.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-D6QB9m/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC build/temp.linux-armhf-2.7/MACS2/IO/BedGraphIO.o -o /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build/MACS2/IO/BedGraphIO.so
building 'MACS2.IO.FixWidthTrack' extension
arm-linux-gnueabihf-gcc -pthread -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/IO/FixWidthTrack.c -o build/temp.linux-armhf-2.7/MACS2/IO/FixWidthTrack.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-D6QB9m/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC build/temp.linux-armhf-2.7/MACS2/IO/FixWidthTrack.o -o /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build/MACS2/IO/FixWidthTrack.so
building 'MACS2.IO.PairedEndTrack' extension
arm-linux-gnueabihf-gcc -pthread -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/IO/PairedEndTrack.c -o build/temp.linux-armhf-2.7/MACS2/IO/PairedEndTrack.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-D6QB9m/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC build/temp.linux-armhf-2.7/MACS2/IO/PairedEndTrack.o -o /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build/MACS2/IO/PairedEndTrack.so
building 'MACS2.IO.BedGraph' extension
arm-linux-gnueabihf-gcc -pthread -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c MACS2/IO/BedGraph.c -o build/temp.linux-armhf-2.7/MACS2/IO/BedGraph.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-D6QB9m/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC build/temp.linux-armhf-2.7/MACS2/IO/BedGraph.o -lm -o /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build/MACS2/IO/BedGraph.so
building 'MACS2.IO.ScoreTrack' extension
arm-linux-gnueabihf-gcc -pthread -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/IO/ScoreTrack.c -o build/temp.linux-armhf-2.7/MACS2/IO/ScoreTrack.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-D6QB9m/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC build/temp.linux-armhf-2.7/MACS2/IO/ScoreTrack.o -o /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build/MACS2/IO/ScoreTrack.so
building 'MACS2.IO.CallPeakUnit' extension
arm-linux-gnueabihf-gcc -pthread -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/IO/CallPeakUnit.c -o build/temp.linux-armhf-2.7/MACS2/IO/CallPeakUnit.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-D6QB9m/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC build/temp.linux-armhf-2.7/MACS2/IO/CallPeakUnit.o -o /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build/MACS2/IO/CallPeakUnit.so
building 'MACS2.hashtable' extension
arm-linux-gnueabihf-gcc -pthread -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./MACS2 -IMACS2/ -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/hashtable.c -o build/temp.linux-armhf-2.7/MACS2/hashtable.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-D6QB9m/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC build/temp.linux-armhf-2.7/MACS2/hashtable.o -o /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build/MACS2/hashtable.so
building 'MACS2.Statistics' extension
arm-linux-gnueabihf-gcc -pthread -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./MACS2 -IMACS2/ -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/Statistics.c -o build/temp.linux-armhf-2.7/MACS2/Statistics.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-D6QB9m/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC build/temp.linux-armhf-2.7/MACS2/Statistics.o -lm -o /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build/MACS2/Statistics.so
running build_scripts
creating build/scripts-2.7
copying and adjusting bin/macs2 -> build/scripts-2.7
changing mode of build/scripts-2.7/macs2 from 664 to 775
PYTHONPATH=./.pybuild/pythonX.Y_2.7/build/ help2man \
--no-discard-stderr --no-info \
--name "macs2 \- Model\-based Analysis for ChIP\-Sequencing" "python bin/macs2" > debian/macs2.1
for subcommand in callpeak bdgpeakcall bdgbroadcall bdgcmp bdgopt cmbreps bdgdiff filterdup predictd pileup randsample refinepeak; do printf \
"[NAME]\nmacs2_${subcommand} \- Model\-based Analysis for ChIP\-Sequencing\n" \
> debian/macs2_${subcommand}-man-include; done
for subcommand in callpeak bdgpeakcall bdgbroadcall bdgcmp bdgopt cmbreps bdgdiff filterdup predictd pileup randsample refinepeak; do \
PYTHONPATH=./.pybuild/pythonX.Y_2.7/build/ help2man \
--no-discard-stderr --no-info --version-string="2.1.4" \
--include debian/macs2_${subcommand}-man-include \
"python bin/macs2 ${subcommand}" > \
debian/macs2_${subcommand}.1; done
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:217: cd /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build; python2.7 -m unittest discover -v
----------------------------------------------------------------------
Ran 0 tests in 0.000s
OK
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch --with python2 --buildsystem=pybuild
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
dh_auto_install -a -O--buildsystem=pybuild
I: pybuild base:217: /usr/bin/python setup.py install --root /<<PKGBUILDDIR>>/debian/macs
running install
running build
running build_py
running build_ext
running build_scripts
running install_lib
creating /<<PKGBUILDDIR>>/debian/macs/usr
creating /<<PKGBUILDDIR>>/debian/macs/usr/lib
creating /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7
creating /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages
creating /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build/MACS2/refinepeak_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build/MACS2/bdgdiff_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build/MACS2/diffpeak_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build/MACS2/bdgpeakcall_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build/MACS2/OutputWriter.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build/MACS2/OptValidator.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build/MACS2/callpeak_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build/MACS2/filterdup_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build/MACS2/bdgcmp_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build/MACS2/bdgbroadcall_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build/MACS2/__init__.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build/MACS2/bdgopt_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build/MACS2/cmbreps_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build/MACS2/Constants.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build/MACS2/randsample_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build/MACS2/predictd_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build/MACS2/pileup_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
creating /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build/MACS2/IO/__init__.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build/MACS2/IO/Parser.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build/MACS2/IO/PeakIO.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build/MACS2/IO/BedGraphIO.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build/MACS2/IO/FixWidthTrack.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build/MACS2/IO/PairedEndTrack.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build/MACS2/IO/BedGraph.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build/MACS2/IO/ScoreTrack.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build/MACS2/IO/CallPeakUnit.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build/MACS2/Prob.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build/MACS2/Pileup.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build/MACS2/PeakModel.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build/MACS2/PeakDetect.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build/MACS2/Signal.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build/MACS2/hashtable.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_MACS2/build/MACS2/Statistics.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/refinepeak_cmd.py to refinepeak_cmd.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/bdgdiff_cmd.py to bdgdiff_cmd.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/diffpeak_cmd.py to diffpeak_cmd.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/bdgpeakcall_cmd.py to bdgpeakcall_cmd.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/OutputWriter.py to OutputWriter.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/OptValidator.py to OptValidator.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/callpeak_cmd.py to callpeak_cmd.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/filterdup_cmd.py to filterdup_cmd.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/bdgcmp_cmd.py to bdgcmp_cmd.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/bdgbroadcall_cmd.py to bdgbroadcall_cmd.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/__init__.py to __init__.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/bdgopt_cmd.py to bdgopt_cmd.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/cmbreps_cmd.py to cmbreps_cmd.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/Constants.py to Constants.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/randsample_cmd.py to randsample_cmd.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/predictd_cmd.py to predictd_cmd.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/pileup_cmd.py to pileup_cmd.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO/__init__.py to __init__.pyc
running install_egg_info
running egg_info
writing requirements to MACS2.egg-info/requires.txt
writing MACS2.egg-info/PKG-INFO
writing top-level names to MACS2.egg-info/top_level.txt
writing dependency_links to MACS2.egg-info/dependency_links.txt
reading manifest file 'MACS2.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
no previously-included directories found matching 'test'
writing manifest file 'MACS2.egg-info/SOURCES.txt'
Copying MACS2.egg-info to /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2-2.1.4.egg-info
Skipping SOURCES.txt
running install_scripts
creating /<<PKGBUILDDIR>>/debian/macs/usr/bin
copying build/scripts-2.7/macs2 -> /<<PKGBUILDDIR>>/debian/macs/usr/bin
changing mode of /<<PKGBUILDDIR>>/debian/macs/usr/bin/macs2 to 775
dh_installdocs -a -O--buildsystem=pybuild
dh_installchangelogs -a -O--buildsystem=pybuild
dh_installexamples -a -O--buildsystem=pybuild
dh_installman -a -O--buildsystem=pybuild
dh_python2 -a -O--buildsystem=pybuild
I: dh_python2 fs:343: renaming PeakDetect.so to PeakDetect.arm-linux-gnueabihf.so
I: dh_python2 fs:343: renaming PeakModel.so to PeakModel.arm-linux-gnueabihf.so
I: dh_python2 fs:343: renaming Pileup.so to Pileup.arm-linux-gnueabihf.so
I: dh_python2 fs:343: renaming Prob.so to Prob.arm-linux-gnueabihf.so
I: dh_python2 fs:343: renaming Signal.so to Signal.arm-linux-gnueabihf.so
I: dh_python2 fs:343: renaming Statistics.so to Statistics.arm-linux-gnueabihf.so
I: dh_python2 fs:343: renaming hashtable.so to hashtable.arm-linux-gnueabihf.so
I: dh_python2 fs:343: renaming BedGraph.so to BedGraph.arm-linux-gnueabihf.so
I: dh_python2 fs:343: renaming BedGraphIO.so to BedGraphIO.arm-linux-gnueabihf.so
I: dh_python2 fs:343: renaming CallPeakUnit.so to CallPeakUnit.arm-linux-gnueabihf.so
I: dh_python2 fs:343: renaming FixWidthTrack.so to FixWidthTrack.arm-linux-gnueabihf.so
I: dh_python2 fs:343: renaming PairedEndTrack.so to PairedEndTrack.arm-linux-gnueabihf.so
I: dh_python2 fs:343: renaming Parser.so to Parser.arm-linux-gnueabihf.so
I: dh_python2 fs:343: renaming PeakIO.so to PeakIO.arm-linux-gnueabihf.so
I: dh_python2 fs:343: renaming ScoreTrack.so to ScoreTrack.arm-linux-gnueabihf.so
I: dh_python2 tools:114: replacing shebang in debian/macs/usr/bin/macs2
dh_installinit -a -O--buildsystem=pybuild
dh_installsystemduser -a -O--buildsystem=pybuild
dh_lintian -a -O--buildsystem=pybuild
dh_perl -a -O--buildsystem=pybuild
dh_link -a -O--buildsystem=pybuild
dh_strip_nondeterminism -a -O--buildsystem=pybuild
dh_compress -a -O--buildsystem=pybuild
dh_fixperms -a -O--buildsystem=pybuild
dh_missing -a -O--buildsystem=pybuild
dh_dwz -a -O--buildsystem=pybuild
dh_strip -a -O--buildsystem=pybuild
dh_makeshlibs -a -O--buildsystem=pybuild
dh_shlibdeps -a -O--buildsystem=pybuild
dh_installdeb -a -O--buildsystem=pybuild
dh_gencontrol -a -O--buildsystem=pybuild
dpkg-gencontrol: warning: package macs: substitution variable ${python:Versions} unused, but is defined
dpkg-gencontrol: warning: package macs: substitution variable ${python:Versions} unused, but is defined
dh_md5sums -a -O--buildsystem=pybuild
dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'macs' in '../macs_2.1.4-1_armhf.deb'.
dpkg-deb: building package 'macs-dbgsym' in '../macs-dbgsym_2.1.4-1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../macs_2.1.4-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-source: info: using options from macs-2.1.4/debian/source/options: --extend-diff-ignore=(^|/)(.*\.c)$
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2019-10-03T09:57:03Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
macs_2.1.4-1_armhf.changes:
---------------------------
Format: 1.8
Date: Tue, 01 Oct 2019 12:35:55 +0200
Source: macs
Binary: macs macs-dbgsym
Architecture: armhf
Version: 2.1.4-1
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Michael R. Crusoe <michael.crusoe@gmail.com>
Description:
macs - Model-based Analysis of ChIP-Seq on short reads sequencers
Changes:
macs (2.1.4-1) unstable; urgency=medium
.
* New upstream version
* Add patch to fix spelling typo
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+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
macs-dbgsym_2.1.4-1_armhf.deb
-----------------------------
new Debian package, version 2.0.
size 4777288 bytes: control archive=1292 bytes.
933 bytes, 12 lines control
1674 bytes, 16 lines md5sums
Package: macs-dbgsym
Source: macs
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Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 5089
Depends: macs (= 2.1.4-1)
Section: debug
Priority: optional
Description: debug symbols for macs
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drwxr-xr-x root/root 0 2019-10-01 10:35 ./usr/share/
drwxr-xr-x root/root 0 2019-10-01 10:35 ./usr/share/doc/
lrwxrwxrwx root/root 0 2019-10-01 10:35 ./usr/share/doc/macs-dbgsym -> macs
macs_2.1.4-1_armhf.deb
----------------------
new Debian package, version 2.0.
size 2408676 bytes: control archive=2808 bytes.
980 bytes, 18 lines control
5199 bytes, 60 lines md5sums
154 bytes, 9 lines * postinst #!/bin/sh
247 bytes, 14 lines * prerm #!/bin/sh
Package: macs
Version: 2.1.4-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 5834
Depends: python (<< 2.8), python (>= 2.7~), python-numpy, python:any (<< 2.8), python:any (>= 2.7~), libc6 (>= 2.15)
Section: science
Priority: optional
Homepage: https://github.com/taoliu/MACS/
Description: Model-based Analysis of ChIP-Seq on short reads sequencers
MACS empirically models the length of the sequenced ChIP fragments, which
tends to be shorter than sonication or library construction size estimates,
and uses it to improve the spatial resolution of predicted binding sites.
MACS also uses a dynamic Poisson distribution to effectively capture local
biases in the genome sequence, allowing for more sensitive and robust
prediction. MACS compares favorably to existing ChIP-Seq peak-finding
algorithms, is publicly available open source, and can be used for ChIP-Seq
with or without control samples.
drwxr-xr-x root/root 0 2019-10-01 10:35 ./
drwxr-xr-x root/root 0 2019-10-01 10:35 ./usr/
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-rw-r--r-- root/root 25792 2019-10-01 10:35 ./usr/lib/python2.7/dist-packages/MACS2-2.1.4.egg-info/PKG-INFO
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drwxr-xr-x root/root 0 2019-10-01 10:35 ./usr/lib/python2.7/dist-packages/MACS2/IO/
-rw-r--r-- root/root 427264 2019-10-01 10:35 ./usr/lib/python2.7/dist-packages/MACS2/IO/BedGraph.arm-linux-gnueabihf.so
-rw-r--r-- root/root 82136 2019-10-01 10:35 ./usr/lib/python2.7/dist-packages/MACS2/IO/BedGraphIO.arm-linux-gnueabihf.so
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-rw-r--r-- root/root 406756 2019-10-01 10:35 ./usr/lib/python2.7/dist-packages/MACS2/IO/FixWidthTrack.arm-linux-gnueabihf.so
-rw-r--r-- root/root 253572 2019-10-01 10:35 ./usr/lib/python2.7/dist-packages/MACS2/IO/PairedEndTrack.arm-linux-gnueabihf.so
-rw-r--r-- root/root 461868 2019-10-01 10:35 ./usr/lib/python2.7/dist-packages/MACS2/IO/Parser.arm-linux-gnueabihf.so
-rw-r--r-- root/root 509944 2019-10-01 10:35 ./usr/lib/python2.7/dist-packages/MACS2/IO/PeakIO.arm-linux-gnueabihf.so
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-rw-r--r-- root/root 28427 2019-09-30 21:52 ./usr/lib/python2.7/dist-packages/MACS2/OptValidator.py
-rw-r--r-- root/root 10850 2019-09-30 21:52 ./usr/lib/python2.7/dist-packages/MACS2/OutputWriter.py
-rw-r--r-- root/root 129108 2019-10-01 10:35 ./usr/lib/python2.7/dist-packages/MACS2/PeakDetect.arm-linux-gnueabihf.so
-rw-r--r-- root/root 248724 2019-10-01 10:35 ./usr/lib/python2.7/dist-packages/MACS2/PeakModel.arm-linux-gnueabihf.so
-rw-r--r-- root/root 247632 2019-10-01 10:35 ./usr/lib/python2.7/dist-packages/MACS2/Pileup.arm-linux-gnueabihf.so
-rw-r--r-- root/root 115816 2019-10-01 10:35 ./usr/lib/python2.7/dist-packages/MACS2/Prob.arm-linux-gnueabihf.so
-rw-r--r-- root/root 167120 2019-10-01 10:35 ./usr/lib/python2.7/dist-packages/MACS2/Signal.arm-linux-gnueabihf.so
-rw-r--r-- root/root 81708 2019-10-01 10:35 ./usr/lib/python2.7/dist-packages/MACS2/Statistics.arm-linux-gnueabihf.so
-rw-r--r-- root/root 24 2019-09-30 21:52 ./usr/lib/python2.7/dist-packages/MACS2/__init__.py
-rw-r--r-- root/root 2413 2019-09-30 21:52 ./usr/lib/python2.7/dist-packages/MACS2/bdgbroadcall_cmd.py
-rw-r--r-- root/root 3713 2019-09-30 21:52 ./usr/lib/python2.7/dist-packages/MACS2/bdgcmp_cmd.py
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-rw-r--r-- root/root 2457 2019-09-30 21:52 ./usr/lib/python2.7/dist-packages/MACS2/bdgopt_cmd.py
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-rw-r--r-- root/root 3361 2019-10-01 10:35 ./usr/share/doc/macs/copyright
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+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 83312
Build-Time: 1941
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 668
Job: macs_2.1.4-1
Machine Architecture: armhf
Package: macs
Package-Time: 2670
Source-Version: 2.1.4-1
Space: 83312
Status: successful
Version: 2.1.4-1
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Finished at 2019-10-03T09:57:03Z
Build needed 00:44:30, 83312k disc space