macs →
2.1.1.20160309-1 →
armhf → 2016-05-19 12:00:59
sbuild (Debian sbuild) 0.66.0 (04 Oct 2015) on bm-wb-03
+==============================================================================+
| macs 2.1.1.20160309-1 (armhf) 19 May 2016 11:28 |
+==============================================================================+
Package: macs
Version: 2.1.1.20160309-1
Source Version: 2.1.1.20160309-1
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'build/macs-w6AEnc/macs-2.1.1.20160309' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/macs-w6AEnc' with '<<BUILDDIR>>'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-07e7c722-1702-46b9-b3b4-0837cc05306e' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private stretch-staging/main Sources [8970 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf Packages [11.0 MB]
Fetched 20.0 MB in 21s (914 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'macs' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/macs.git
Please use:
git clone https://anonscm.debian.org/git/debian-med/macs.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 1637 kB of source archives.
Get:1 http://172.17.0.1/private stretch-staging/main macs 2.1.1.20160309-1 (dsc) [2099 B]
Get:2 http://172.17.0.1/private stretch-staging/main macs 2.1.1.20160309-1 (tar) [1628 kB]
Get:3 http://172.17.0.1/private stretch-staging/main macs 2.1.1.20160309-1 (diff) [7628 B]
Fetched 1637 kB in 0s (5636 kB/s)
Download complete and in download only mode
Check architectures
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Check dependencies
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Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-eBvXSh/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Get:1 file:/<<BUILDDIR>>/resolver-eBvXSh/apt_archive ./ InRelease
Ign:1 file:/<<BUILDDIR>>/resolver-eBvXSh/apt_archive ./ InRelease
Get:2 file:/<<BUILDDIR>>/resolver-eBvXSh/apt_archive ./ Release [2119 B]
Get:2 file:/<<BUILDDIR>>/resolver-eBvXSh/apt_archive ./ Release [2119 B]
Get:3 file:/<<BUILDDIR>>/resolver-eBvXSh/apt_archive ./ Release.gpg [299 B]
Get:3 file:/<<BUILDDIR>>/resolver-eBvXSh/apt_archive ./ Release.gpg [299 B]
Get:4 file:/<<BUILDDIR>>/resolver-eBvXSh/apt_archive ./ Sources [214 B]
Get:5 file:/<<BUILDDIR>>/resolver-eBvXSh/apt_archive ./ Packages [527 B]
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: file:///<<BUILDDIR>>/resolver-eBvXSh/apt_archive/./Release.gpg: Signature by key 3493EC2B8E6DC280C121C60435506D9A48F77B2E uses weak digest algorithm (SHA1)
Reading package lists...
+------------------------------------------------------------------------------+
| Install core build dependencies (apt-based resolver) |
+------------------------------------------------------------------------------+
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 1 not upgraded.
Need to get 0 B/766 B of archives.
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Get:1 file:/<<BUILDDIR>>/resolver-eBvXSh/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [766 B]
debconf: delaying package configuration, since apt-utils is not installed
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W: No sandbox user '_apt' on the system, can not drop privileges
Merged Build-Depends: debhelper (>= 9), dh-python, python-all-dev, python-numpy, python-setuptools, help2man, cython
Filtered Build-Depends: debhelper (>= 9), dh-python, python-all-dev, python-numpy, python-setuptools, help2man, cython
dpkg-deb: building package 'sbuild-build-depends-macs-dummy' in '/<<BUILDDIR>>/resolver-Mwx0Rr/apt_archive/sbuild-build-depends-macs-dummy.deb'.
OK
Get:1 file:/<<BUILDDIR>>/resolver-Mwx0Rr/apt_archive ./ InRelease
Ign:1 file:/<<BUILDDIR>>/resolver-Mwx0Rr/apt_archive ./ InRelease
Get:2 file:/<<BUILDDIR>>/resolver-Mwx0Rr/apt_archive ./ Release [2119 B]
Get:2 file:/<<BUILDDIR>>/resolver-Mwx0Rr/apt_archive ./ Release [2119 B]
Get:3 file:/<<BUILDDIR>>/resolver-Mwx0Rr/apt_archive ./ Release.gpg [299 B]
Get:3 file:/<<BUILDDIR>>/resolver-Mwx0Rr/apt_archive ./ Release.gpg [299 B]
Get:4 file:/<<BUILDDIR>>/resolver-Mwx0Rr/apt_archive ./ Sources [246 B]
Get:5 file:/<<BUILDDIR>>/resolver-Mwx0Rr/apt_archive ./ Packages [563 B]
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: file:///<<BUILDDIR>>/resolver-Mwx0Rr/apt_archive/./Release.gpg: Signature by key 3493EC2B8E6DC280C121C60435506D9A48F77B2E uses weak digest algorithm (SHA1)
Reading package lists...
+------------------------------------------------------------------------------+
| Install macs build dependencies (apt-based resolver) |
+------------------------------------------------------------------------------+
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cython debhelper
dh-autoreconf dh-python dh-strip-nondeterminism file gettext gettext-base
groff-base help2man intltool-debian libarchive-zip-perl libblas-common
libblas3 libbsd0 libcroco3 libexpat1 libexpat1-dev libffi6
libfile-stripnondeterminism-perl libgfortran3 libglib2.0-0 libicu55
liblapack3 libmagic1 libmpdec2 libpipeline1 libpython-all-dev libpython-dev
libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal
libpython2.7-stdlib libpython3-stdlib libpython3.5-minimal
libpython3.5-stdlib libsigsegv2 libsqlite3-0 libssl1.0.2 libtimedate-perl
libtool libunistring0 libxml2 m4 man-db mime-support po-debconf python
python-all python-all-dev python-dev python-minimal python-numpy
python-pkg-resources python-setuptools python2.7 python2.7-dev
python2.7-minimal python3 python3-minimal python3.5 python3.5-minimal
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation cython-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev
groff libtool-doc gfortran | fortran95-compiler gcj-jdk less www-browser
libmail-box-perl python-doc python-tk gfortran python-nose python-numpy-dbg
python-numpy-doc python-setuptools-doc python2.7-doc binfmt-support
python3-doc python3-tk python3-venv python3.5-venv python3.5-doc
Recommended packages:
curl | wget | lynx-cur libglib2.0-data shared-mime-info xdg-user-dirs
libltdl-dev xml-core libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cython debhelper
dh-autoreconf dh-python dh-strip-nondeterminism file gettext gettext-base
groff-base help2man intltool-debian libarchive-zip-perl libblas-common
libblas3 libbsd0 libcroco3 libexpat1 libexpat1-dev libffi6
libfile-stripnondeterminism-perl libgfortran3 libglib2.0-0 libicu55
liblapack3 libmagic1 libmpdec2 libpipeline1 libpython-all-dev libpython-dev
libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal
libpython2.7-stdlib libpython3-stdlib libpython3.5-minimal
libpython3.5-stdlib libsigsegv2 libsqlite3-0 libssl1.0.2 libtimedate-perl
libtool libunistring0 libxml2 m4 man-db mime-support po-debconf python
python-all python-all-dev python-dev python-minimal python-numpy
python-pkg-resources python-setuptools python2.7 python2.7-dev
python2.7-minimal python3 python3-minimal python3.5 python3.5-minimal
sbuild-build-depends-macs-dummy
0 upgraded, 69 newly installed, 0 to remove and 1 not upgraded.
Need to get 53.8 MB/62.0 MB of archives.
After this operation, 169 MB of additional disk space will be used.
Get:1 file:/<<BUILDDIR>>/resolver-Mwx0Rr/apt_archive ./ sbuild-build-depends-macs-dummy 0.invalid.0 [804 B]
Get:2 http://172.17.0.1/private stretch-staging/main armhf groff-base armhf 1.22.3-7 [1083 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf libbsd0 armhf 0.8.3-1 [89.0 kB]
Get:4 http://172.17.0.1/private stretch-staging/main armhf bsdmainutils armhf 9.0.10 [177 kB]
Get:5 http://172.17.0.1/private stretch-staging/main armhf libpipeline1 armhf 1.4.1-2 [23.7 kB]
Get:6 http://172.17.0.1/private stretch-staging/main armhf man-db armhf 2.7.5-1 [975 kB]
Get:7 http://172.17.0.1/private stretch-staging/main armhf libpython2.7-minimal armhf 2.7.11-9 [382 kB]
Get:8 http://172.17.0.1/private stretch-staging/main armhf python2.7-minimal armhf 2.7.11-9 [1163 kB]
Get:9 http://172.17.0.1/private stretch-staging/main armhf python-minimal armhf 2.7.11-1 [40.0 kB]
Get:10 http://172.17.0.1/private stretch-staging/main armhf mime-support all 3.60 [36.7 kB]
Get:11 http://172.17.0.1/private stretch-staging/main armhf libexpat1 armhf 2.1.1-1 [60.4 kB]
Get:12 http://172.17.0.1/private stretch-staging/main armhf libsqlite3-0 armhf 3.12.2-1 [464 kB]
Get:13 http://172.17.0.1/private stretch-staging/main armhf libssl1.0.2 armhf 1.0.2h-1 [889 kB]
Get:14 http://172.17.0.1/private stretch-staging/main armhf libpython2.7-stdlib armhf 2.7.11-9 [1817 kB]
Get:15 http://172.17.0.1/private stretch-staging/main armhf python2.7 armhf 2.7.11-9 [271 kB]
Get:16 http://172.17.0.1/private stretch-staging/main armhf libpython-stdlib armhf 2.7.11-1 [19.5 kB]
Get:17 http://172.17.0.1/private stretch-staging/main armhf python armhf 2.7.11-1 [150 kB]
Get:18 http://172.17.0.1/private stretch-staging/main armhf libunistring0 armhf 0.9.3-5.2 [253 kB]
Get:19 http://172.17.0.1/private stretch-staging/main armhf libpython3.5-minimal armhf 3.5.1-12 [555 kB]
Get:20 http://172.17.0.1/private stretch-staging/main armhf python3.5-minimal armhf 3.5.1-12 [1416 kB]
Get:21 http://172.17.0.1/private stretch-staging/main armhf python3-minimal armhf 3.5.1-3 [35.2 kB]
Get:22 http://172.17.0.1/private stretch-staging/main armhf libmpdec2 armhf 2.4.2-1 [67.5 kB]
Get:23 http://172.17.0.1/private stretch-staging/main armhf libpython3.5-stdlib armhf 3.5.1-12 [2061 kB]
Get:24 http://172.17.0.1/private stretch-staging/main armhf python3.5 armhf 3.5.1-12 [202 kB]
Get:25 http://172.17.0.1/private stretch-staging/main armhf libpython3-stdlib armhf 3.5.1-3 [18.6 kB]
Get:26 http://172.17.0.1/private stretch-staging/main armhf dh-python all 2.20151103 [76.9 kB]
Get:27 http://172.17.0.1/private stretch-staging/main armhf python3 armhf 3.5.1-3 [21.6 kB]
Get:28 http://172.17.0.1/private stretch-staging/main armhf libmagic1 armhf 1:5.25-2 [250 kB]
Get:29 http://172.17.0.1/private stretch-staging/main armhf file armhf 1:5.25-2 [61.2 kB]
Get:30 http://172.17.0.1/private stretch-staging/main armhf gettext-base armhf 0.19.7-2 [111 kB]
Get:31 http://172.17.0.1/private stretch-staging/main armhf libpython2.7 armhf 2.7.11-9 [908 kB]
Get:32 http://172.17.0.1/private stretch-staging/main armhf libsigsegv2 armhf 2.10-5 [28.4 kB]
Get:33 http://172.17.0.1/private stretch-staging/main armhf m4 armhf 1.4.17-5 [239 kB]
Get:34 http://172.17.0.1/private stretch-staging/main armhf autoconf all 2.69-10 [338 kB]
Get:35 http://172.17.0.1/private stretch-staging/main armhf autotools-dev all 20160430.1 [72.6 kB]
Get:36 http://172.17.0.1/private stretch-staging/main armhf automake all 1:1.15-4 [735 kB]
Get:37 http://172.17.0.1/private stretch-staging/main armhf autopoint all 0.19.7-2 [424 kB]
Get:38 http://172.17.0.1/private stretch-staging/main armhf cython armhf 0.23.4+git4-g7eed8d8-1 [1446 kB]
Get:39 http://172.17.0.1/private stretch-staging/main armhf libglib2.0-0 armhf 2.48.1-1 [2548 kB]
Get:40 http://172.17.0.1/private stretch-staging/main armhf libcroco3 armhf 0.6.11-1 [131 kB]
Get:41 http://172.17.0.1/private stretch-staging/main armhf gettext armhf 0.19.7-2 [1400 kB]
Get:42 http://172.17.0.1/private stretch-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:43 http://172.17.0.1/private stretch-staging/main armhf po-debconf all 1.0.19 [249 kB]
Get:44 http://172.17.0.1/private stretch-staging/main armhf libarchive-zip-perl all 1.57-1 [95.1 kB]
Get:45 http://172.17.0.1/private stretch-staging/main armhf libfile-stripnondeterminism-perl all 0.016-1 [11.9 kB]
Get:46 http://172.17.0.1/private stretch-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:47 http://172.17.0.1/private stretch-staging/main armhf dh-strip-nondeterminism all 0.016-1 [6998 B]
Get:48 http://172.17.0.1/private stretch-staging/main armhf libtool all 2.4.6-0.1 [200 kB]
Get:49 http://172.17.0.1/private stretch-staging/main armhf dh-autoreconf all 12 [15.8 kB]
Get:50 http://172.17.0.1/private stretch-staging/main armhf debhelper all 9.20160403 [800 kB]
Get:51 http://172.17.0.1/private stretch-staging/main armhf help2man armhf 1.47.4 [162 kB]
Get:52 http://172.17.0.1/private stretch-staging/main armhf libblas-common armhf 3.6.0-2 [13.5 kB]
Get:53 http://172.17.0.1/private stretch-staging/main armhf libgfortran3 armhf 6.1.1-1+rpi1 [166 kB]
Get:54 http://172.17.0.1/private stretch-staging/main armhf libblas3 armhf 3.6.0-2 [110 kB]
Get:55 http://172.17.0.1/private stretch-staging/main armhf libexpat1-dev armhf 2.1.1-1 [117 kB]
Get:56 http://172.17.0.1/private stretch-staging/main armhf liblapack3 armhf 3.6.0-2 [1382 kB]
Get:57 http://172.17.0.1/private stretch-staging/main armhf libpython2.7-dev armhf 2.7.11-9 [27.1 MB]
Get:58 http://172.17.0.1/private stretch-staging/main armhf libpython-dev armhf 2.7.11-1 [19.6 kB]
Get:59 http://172.17.0.1/private stretch-staging/main armhf libpython-all-dev armhf 2.7.11-1 [958 B]
Get:60 http://172.17.0.1/private stretch-staging/main armhf python-all armhf 2.7.11-1 [940 B]
Get:61 http://172.17.0.1/private stretch-staging/main armhf python2.7-dev armhf 2.7.11-9 [279 kB]
Get:62 http://172.17.0.1/private stretch-staging/main armhf python-dev armhf 2.7.11-1 [1138 B]
Get:63 http://172.17.0.1/private stretch-staging/main armhf python-all-dev armhf 2.7.11-1 [962 B]
Get:64 http://172.17.0.1/private stretch-staging/main armhf python-numpy armhf 1:1.11.0-1 [1595 kB]
Get:65 http://172.17.0.1/private stretch-staging/main armhf python-pkg-resources all 20.10.1-1 [141 kB]
Get:66 http://172.17.0.1/private stretch-staging/main armhf python-setuptools all 20.10.1-1 [203 kB]
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Processing triggers for libc-bin (2.22-7) ...
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Setting up bsdmainutils (9.0.10) ...
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Not building database; man-db/auto-update is not 'true'.
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Setting up libpython2.7:armhf (2.7.11-9) ...
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Setting up libxml2:armhf (2.9.3+dfsg1-1) ...
Setting up libsigsegv2:armhf (2.10-5) ...
Setting up m4 (1.4.17-5) ...
Setting up autoconf (2.69-10) ...
Setting up autotools-dev (20160430.1) ...
Setting up automake (1:1.15-4) ...
update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode
Setting up autopoint (0.19.7-2) ...
Setting up cython (0.23.4+git4-g7eed8d8-1) ...
Setting up libglib2.0-0:armhf (2.48.1-1) ...
No schema files found: doing nothing.
Setting up libcroco3:armhf (0.6.11-1) ...
Setting up gettext (0.19.7-2) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up po-debconf (1.0.19) ...
Setting up libarchive-zip-perl (1.57-1) ...
Setting up libfile-stripnondeterminism-perl (0.016-1) ...
Setting up libtimedate-perl (2.3000-2) ...
Setting up libtool (2.4.6-0.1) ...
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Setting up libgfortran3:armhf (6.1.1-1+rpi1) ...
Setting up libblas3 (3.6.0-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
Setting up libexpat1-dev:armhf (2.1.1-1) ...
Setting up liblapack3 (3.6.0-2) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
Setting up libpython2.7-dev:armhf (2.7.11-9) ...
Setting up libpython-dev:armhf (2.7.11-1) ...
Setting up libpython-all-dev:armhf (2.7.11-1) ...
Setting up python-all (2.7.11-1) ...
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Setting up python-dev (2.7.11-1) ...
Setting up python-all-dev (2.7.11-1) ...
Setting up python-numpy (1:1.11.0-1) ...
Setting up python-pkg-resources (20.10.1-1) ...
Setting up python-setuptools (20.10.1-1) ...
Setting up dh-python (2.20151103) ...
Setting up python3 (3.5.1-3) ...
Setting up dh-autoreconf (12) ...
Setting up debhelper (9.20160403) ...
Setting up sbuild-build-depends-macs-dummy (0.invalid.0) ...
Setting up dh-strip-nondeterminism (0.016-1) ...
Processing triggers for libc-bin (2.22-7) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 3.19.0-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.26-8 dpkg-dev_1.18.7 g++-5_5.3.1-19 gcc-5_5.3.1-19 libc6-dev_2.22-7 libstdc++-5-dev_5.3.1-19 libstdc++6_6.1.1-1+rpi1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: adduser_3.114 apt_1.2.12 autoconf_2.69-10 automake_1:1.15-4 autopoint_0.19.7-2 autotools-dev_20160430.1 base-files_9.6+rpi1 base-passwd_3.5.39 bash_4.3-14 binutils_2.26-8 bsdmainutils_9.0.10 bsdutils_1:2.28-5 build-essential_11.7 bzip2_1.0.6-8 console-setup_1.142 console-setup-linux_1.142 coreutils_8.25-2 cpio_2.11+dfsg-5 cpp_4:5.3.1-1+rpi1 cpp-5_5.3.1-19 cython_0.23.4+git4-g7eed8d8-1 dash_0.5.8-2.2 debconf_1.5.59 debfoster_2.7-2 debhelper_9.20160403 debianutils_4.7 dh-autoreconf_12 dh-python_2.20151103 dh-strip-nondeterminism_0.016-1 diffutils_1:3.3-3 dmsetup_2:1.02.124-1 dpkg_1.18.7 dpkg-dev_1.18.7 e2fslibs_1.43~WIP.2016.03.15-2 e2fsprogs_1.43~WIP.2016.03.15-2 fakeroot_1.20.2-1 file_1:5.25-2 findutils_4.6.0+git+20160126-2 g++_4:5.3.1-1+rpi1 g++-5_5.3.1-19 gcc_4:5.3.1-1+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-14 gcc-5_5.3.1-19 gcc-5-base_5.3.1-19 gcc-6-base_6.1.1-1+rpi1 gettext_0.19.7-2 gettext-base_0.19.7-2 gnupg_1.4.20-6 gpgv_1.4.20-6 grep_2.25-1 groff-base_1.22.3-7 gzip_1.6-5 help2man_1.47.4 hostname_3.17 ifupdown_0.8.11 init_1.33 init-system-helpers_1.33 initscripts_2.88dsf-59.4 insserv_1.14.0-5.3 intltool-debian_0.35.0+20060710.4 iproute2_4.3.0-1 kbd_2.0.3-2 keyboard-configuration_1.142 klibc-utils_2.0.4-8+rpi1 kmod_22-1.1 libacl1_2.2.52-3 libapparmor1_2.10-4 libapt-pkg5.0_1.2.12 libarchive-zip-perl_1.57-1 libasan2_5.3.1-19 libatm1_1:2.5.1-1.5 libatomic1_6.1.1-1+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.5.2-1+rpi1 libaudit1_1:2.5.2-1+rpi1 libblas-common_3.6.0-2 libblas3_3.6.0-2 libblkid1_2.28-5 libbsd0_0.8.3-1 libbz2-1.0_1.0.6-8 libc-bin_2.22-7 libc-dev-bin_2.22-7 libc6_2.22-7 libc6-dev_2.22-7 libcap2_1:2.24-12 libcap2-bin_1:2.24-12 libcc1-0_6.1.1-1+rpi1 libcomerr2_1.43~WIP.2016.03.15-2 libcroco3_0.6.11-1 libcryptsetup4_2:1.7.0-2 libdb5.3_5.3.28-11 libdbus-1-3_1.10.8-1 libdebconfclient0_0.210 libdevmapper1.02.1_2:1.02.124-1 libdpkg-perl_1.18.7 libdrm2_2.4.68-1 libexpat1_2.1.1-1 libexpat1-dev_2.1.1-1 libfakeroot_1.20.2-1 libfdisk1_2.28-5 libffi6_3.2.1-4 libfile-stripnondeterminism-perl_0.016-1 libgc1c2_1:7.4.2-7.4 libgcc-5-dev_5.3.1-19 libgcc1_1:6.1.1-1+rpi1 libgcrypt20_1.7.0-2 libgdbm3_1.8.3-13.1 libgfortran3_6.1.1-1+rpi1 libglib2.0-0_2.48.1-1 libgmp10_2:6.1.0+dfsg-2 libgomp1_6.1.1-1+rpi1 libgpg-error0_1.22-2 libicu55_55.1-7 libisl15_0.16.1-1 libklibc_2.0.4-8+rpi1 libkmod2_22-1.1 liblapack3_3.6.0-2 liblocale-gettext-perl_1.07-1+b1 liblz4-1_0.0~r131-2 liblzma5_5.1.1alpha+20120614-2.1 libmagic1_1:5.25-2 libmount1_2.28-5 libmpc3_1.0.3-1 libmpdec2_2.4.2-1 libmpfr4_3.1.4-1 libncurses5_6.0+20160319-1 libncursesw5_6.0+20160319-1 libpam-modules_1.1.8-3.2 libpam-modules-bin_1.1.8-3.2 libpam-runtime_1.1.8-3.2 libpam0g_1.1.8-3.2 libpcre3_2:8.38-3.1 libperl5.22_5.22.2-1 libpipeline1_1.4.1-2 libplymouth4_0.9.2-3 libpng12-0_1.2.54-6 libprocps5_2:3.3.11-3 libpython-all-dev_2.7.11-1 libpython-dev_2.7.11-1 libpython-stdlib_2.7.11-1 libpython2.7_2.7.11-9 libpython2.7-dev_2.7.11-9 libpython2.7-minimal_2.7.11-9 libpython2.7-stdlib_2.7.11-9 libpython3-stdlib_3.5.1-3 libpython3.5-minimal_3.5.1-12 libpython3.5-stdlib_3.5.1-12 libreadline6_6.3-8+b3 libseccomp2_2.3.0-1 libselinux1_2.5-2 libsemanage-common_2.5-1 libsemanage1_2.5-1 libsepol1_2.5-1 libsigsegv2_2.10-5 libsmartcols1_2.28-5 libsqlite3-0_3.12.2-1 libss2_1.43~WIP.2016.03.15-2 libssl1.0.2_1.0.2h-1 libstdc++-5-dev_5.3.1-19 libstdc++6_6.1.1-1+rpi1 libsystemd0_229-5 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160319-1 libtool_2.4.6-0.1 libubsan0_6.1.1-1+rpi1 libudev1_229-5 libunistring0_0.9.3-5.2 libusb-0.1-4_2:0.1.12-30 libustr-1.0-1_1.0.4-5 libuuid1_2.28-5 libxml2_2.9.3+dfsg1-1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.2-3.1 lsb-base_9.20160110+rpi1 m4_1.4.17-5 make_4.1-9 makedev_2.3.1-93 man-db_2.7.5-1 manpages_4.06-1 mawk_1.3.3-17 mime-support_3.60 mount_2.28-5 multiarch-support_2.22-7 ncurses-base_6.0+20160319-1 ncurses-bin_6.0+20160319-1 netbase_5.3 passwd_1:4.2-3.1 patch_2.7.5-1 perl_5.22.2-1 perl-base_5.22.2-1 perl-modules-5.22_5.22.2-1 po-debconf_1.0.19 procps_2:3.3.11-3 psmisc_22.21-2.1 python_2.7.11-1 python-all_2.7.11-1 python-all-dev_2.7.11-1 python-dev_2.7.11-1 python-minimal_2.7.11-1 python-numpy_1:1.11.0-1 python-pkg-resources_20.10.1-1 python-setuptools_20.10.1-1 python2.7_2.7.11-9 python2.7-dev_2.7.11-9 python2.7-minimal_2.7.11-9 python3_3.5.1-3 python3-minimal_3.5.1-3 python3.5_3.5.1-12 python3.5-minimal_3.5.1-12 raspbian-archive-keyring_20120528.2 readline-common_6.3-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-macs-dummy_0.invalid.0 sed_4.2.2-7.1 sensible-utils_0.0.9 startpar_0.59-3 systemd_229-5 systemd-sysv_229-5 sysv-rc_2.88dsf-59.4 sysvinit-utils_2.88dsf-59.4 tar_1.28-2.2+rpi1 tzdata_2016d-2 udev_229-5 util-linux_2.28-5 xkb-data_2.17-1 xz-utils_5.1.1alpha+20120614-2.1 zlib1g_1:1.2.8.dfsg-2+b1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Fri May 13 18:16:24 2016 UTC using RSA key ID 6C67E6E2
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./macs_2.1.1.20160309-1.dsc
dpkg-source: info: extracting macs in macs-2.1.1.20160309
dpkg-source: info: unpacking macs_2.1.1.20160309.orig.tar.gz
dpkg-source: info: unpacking macs_2.1.1.20160309-1.debian.tar.xz
dpkg-source: info: applying spelling
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LOGNAME=root
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-07e7c722-1702-46b9-b3b4-0837cc05306e
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package macs
dpkg-buildpackage: info: source version 2.1.1.20160309-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build macs-2.1.1.20160309
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --with python2 --buildsystem=pybuild
dh_testdir -O--buildsystem=pybuild
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
I: pybuild base:184: python2.7 setup.py clean
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build' (and everything under it)
'build/bdist.linux-armv7l' does not exist -- can't clean it
'build/scripts-2.7' does not exist -- can't clean it
rm -f debian/*.1 debian/*-man-include
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_clean -O--buildsystem=pybuild
debian/rules build-arch
dh build-arch --with python2 --buildsystem=pybuild
dh_testdir -a -O--buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:184: python2.7 setup.py config
running config
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
for pyx in `find MACS2/ -name "*.pyx" | grep -v khash`; do \
rm -f ${pyx%%.pyx}.{h,c}; touch ${pyx}; done
cp setup.py setup.py.orig
cp setup_w_cython.py setup.py
dh_auto_build
I: pybuild base:184: /usr/bin/python setup.py build
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2
copying MACS2/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2
copying MACS2/bdgbroadcall_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2
copying MACS2/bdgcmp_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2
copying MACS2/bdgdiff_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2
copying MACS2/bdgopt_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2
copying MACS2/bdgpeakcall_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2
copying MACS2/callpeak_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2
copying MACS2/cmbreps_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2
copying MACS2/Constants.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2
copying MACS2/diffpeak_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2
copying MACS2/filterdup_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2
copying MACS2/OptValidator.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2
copying MACS2/OutputWriter.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2
copying MACS2/pileup_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2
copying MACS2/predictd_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2
copying MACS2/randsample_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2
copying MACS2/refinepeak_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO
copying MACS2/IO/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO
copying MACS2/IO/BinKeeper.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO
copying MACS2/IO/test_processing.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO
copying MACS2/IO/test_threading.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/data
copying MACS2/data/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/data
copying MACS2/data/g0.01.dat -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/data
copying MACS2/data/g0.05.dat -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/data
running build_ext
cythoning MACS2/Prob.pyx to MACS2/Prob.c
building 'MACS2.Prob' extension
creating build
creating build/temp.linux-armv7l-2.7
creating build/temp.linux-armv7l-2.7/MACS2
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/Prob.c -o build/temp.linux-armv7l-2.7/MACS2/Prob.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/Prob.o -lm -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/Prob.so
cythoning MACS2/IO/Parser.pyx to MACS2/IO/Parser.c
building 'MACS2.IO.Parser' extension
creating build/temp.linux-armv7l-2.7/MACS2/IO
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/IO/Parser.c -o build/temp.linux-armv7l-2.7/MACS2/IO/Parser.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/IO/Parser.o -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/Parser.so
cythoning MACS2/Pileup.pyx to MACS2/Pileup.c
building 'MACS2.Pileup' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/Pileup.c -o build/temp.linux-armv7l-2.7/MACS2/Pileup.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/cPosValCalculation.c -o build/temp.linux-armv7l-2.7/MACS2/cPosValCalculation.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/Pileup.o build/temp.linux-armv7l-2.7/MACS2/cPosValCalculation.o -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/Pileup.so
cythoning MACS2/PeakModel.pyx to MACS2/PeakModel.c
building 'MACS2.PeakModel' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/PeakModel.c -o build/temp.linux-armv7l-2.7/MACS2/PeakModel.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/PeakModel.o -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/PeakModel.so
cythoning MACS2/PeakDetect.pyx to MACS2/PeakDetect.c
building 'MACS2.PeakDetect' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c MACS2/PeakDetect.c -o build/temp.linux-armv7l-2.7/MACS2/PeakDetect.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/PeakDetect.o -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/PeakDetect.so
cythoning MACS2/Signal.pyx to MACS2/Signal.c
building 'MACS2.Signal' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/Signal.c -o build/temp.linux-armv7l-2.7/MACS2/Signal.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/Signal.o -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/Signal.so
cythoning MACS2/IO/PeakIO.pyx to MACS2/IO/PeakIO.c
building 'MACS2.IO.PeakIO' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c MACS2/IO/PeakIO.c -o build/temp.linux-armv7l-2.7/MACS2/IO/PeakIO.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/IO/PeakIO.o -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/PeakIO.so
cythoning MACS2/IO/BedGraphIO.pyx to MACS2/IO/BedGraphIO.c
building 'MACS2.IO.BedGraphIO' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c MACS2/IO/BedGraphIO.c -o build/temp.linux-armv7l-2.7/MACS2/IO/BedGraphIO.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/IO/BedGraphIO.o -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/BedGraphIO.so
cythoning MACS2/IO/FixWidthTrack.pyx to MACS2/IO/FixWidthTrack.c
building 'MACS2.IO.FixWidthTrack' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/IO/FixWidthTrack.c -o build/temp.linux-armv7l-2.7/MACS2/IO/FixWidthTrack.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/IO/FixWidthTrack.o -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/FixWidthTrack.so
cythoning MACS2/IO/PairedEndTrack.pyx to MACS2/IO/PairedEndTrack.c
building 'MACS2.IO.PairedEndTrack' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/IO/PairedEndTrack.c -o build/temp.linux-armv7l-2.7/MACS2/IO/PairedEndTrack.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/IO/PairedEndTrack.o -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/PairedEndTrack.so
cythoning MACS2/IO/BedGraph.pyx to MACS2/IO/BedGraph.c
building 'MACS2.IO.BedGraph' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c MACS2/IO/BedGraph.c -o build/temp.linux-armv7l-2.7/MACS2/IO/BedGraph.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/IO/BedGraph.o -lm -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/BedGraph.so
cythoning MACS2/IO/ScoreTrack.pyx to MACS2/IO/ScoreTrack.c
building 'MACS2.IO.ScoreTrack' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/IO/ScoreTrack.c -o build/temp.linux-armv7l-2.7/MACS2/IO/ScoreTrack.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/IO/ScoreTrack.o -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/ScoreTrack.so
cythoning MACS2/IO/CallPeakUnit.pyx to MACS2/IO/CallPeakUnit.c
building 'MACS2.IO.CallPeakUnit' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/IO/CallPeakUnit.c -o build/temp.linux-armv7l-2.7/MACS2/IO/CallPeakUnit.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/IO/CallPeakUnit.o -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/CallPeakUnit.so
cythoning MACS2/hashtable.pyx to MACS2/hashtable.c
building 'MACS2.hashtable' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS2/ -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/hashtable.c -o build/temp.linux-armv7l-2.7/MACS2/hashtable.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/hashtable.o -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/hashtable.so
cythoning MACS2/Statistics.pyx to MACS2/Statistics.c
building 'MACS2.Statistics' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS2/ -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/Statistics.c -o build/temp.linux-armv7l-2.7/MACS2/Statistics.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS2/ -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/cStatistics.c -o build/temp.linux-armv7l-2.7/MACS2/cStatistics.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/Statistics.o build/temp.linux-armv7l-2.7/MACS2/cStatistics.o -lm -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/Statistics.so
running build_scripts
creating build/scripts-2.7
copying and adjusting bin/macs2 -> build/scripts-2.7
changing mode of build/scripts-2.7/macs2 from 664 to 775
PYTHONPATH=./.pybuild/pythonX.Y_2.7/build/ help2man \
--no-discard-stderr --no-info \
--name "macs2 \- Model\-based Analysis for ChIP\-Sequencing" "python bin/macs2" > debian/macs2.1
for subcommand in callpeak bdgpeakcall bdgbroadcall bdgcmp bdgopt cmbreps bdgdiff filterdup predictd pileup randsample refinepeak; do printf \
"[NAME]\nmacs2_${subcommand} \- Model\-based Analysis for ChIP\-Sequencing\n" \
> debian/macs2_${subcommand}-man-include; done
for subcommand in callpeak bdgpeakcall bdgbroadcall bdgcmp bdgopt cmbreps bdgdiff filterdup predictd pileup randsample refinepeak; do \
PYTHONPATH=./.pybuild/pythonX.Y_2.7/build/ help2man \
--no-discard-stderr --no-info --version-string="2.1.1.20160309" \
--include debian/macs2_${subcommand}-man-include \
"python bin/macs2 ${subcommand}" > \
debian/macs2_${subcommand}.1; done
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:184: cd /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build; python2.7 -m unittest discover -v
----------------------------------------------------------------------
Ran 0 tests in 0.000s
OK
fakeroot debian/rules binary-arch
dh binary-arch --with python2 --buildsystem=pybuild
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
dh_auto_install -a -O--buildsystem=pybuild
I: pybuild base:184: /usr/bin/python setup.py install --root /<<PKGBUILDDIR>>/debian/macs
running install
running build
running build_py
running build_ext
skipping 'MACS2/Prob.c' Cython extension (up-to-date)
skipping 'MACS2/IO/Parser.c' Cython extension (up-to-date)
skipping 'MACS2/Pileup.c' Cython extension (up-to-date)
skipping 'MACS2/PeakModel.c' Cython extension (up-to-date)
skipping 'MACS2/PeakDetect.c' Cython extension (up-to-date)
skipping 'MACS2/Signal.c' Cython extension (up-to-date)
skipping 'MACS2/IO/PeakIO.c' Cython extension (up-to-date)
skipping 'MACS2/IO/BedGraphIO.c' Cython extension (up-to-date)
skipping 'MACS2/IO/FixWidthTrack.c' Cython extension (up-to-date)
skipping 'MACS2/IO/PairedEndTrack.c' Cython extension (up-to-date)
skipping 'MACS2/IO/BedGraph.c' Cython extension (up-to-date)
skipping 'MACS2/IO/ScoreTrack.c' Cython extension (up-to-date)
skipping 'MACS2/IO/CallPeakUnit.c' Cython extension (up-to-date)
skipping 'MACS2/hashtable.c' Cython extension (up-to-date)
skipping 'MACS2/Statistics.c' Cython extension (up-to-date)
running build_scripts
running install_lib
creating /<<PKGBUILDDIR>>/debian/macs/usr
creating /<<PKGBUILDDIR>>/debian/macs/usr/lib
creating /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7
creating /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages
creating /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/__init__.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/bdgbroadcall_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/bdgcmp_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/bdgdiff_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/bdgopt_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/bdgpeakcall_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/callpeak_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/cmbreps_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/Constants.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/diffpeak_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/filterdup_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/OptValidator.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/OutputWriter.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/pileup_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/predictd_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/randsample_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/refinepeak_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
creating /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/__init__.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/BinKeeper.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/test_processing.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/test_threading.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/Parser.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/PeakIO.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/BedGraphIO.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/FixWidthTrack.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/PairedEndTrack.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/BedGraph.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/ScoreTrack.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/CallPeakUnit.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/__init__.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/test_processing.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/test_threading.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
creating /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/data/__init__.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/data/g0.01.dat -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/data/g0.05.dat -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/Prob.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/Pileup.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/PeakModel.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/PeakDetect.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/Signal.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/hashtable.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/Statistics.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/__init__.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/Constants.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/bdgbroadcall_cmd.py to bdgbroadcall_cmd.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/bdgcmp_cmd.py to bdgcmp_cmd.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/bdgdiff_cmd.py to bdgdiff_cmd.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/bdgopt_cmd.py to bdgopt_cmd.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/bdgpeakcall_cmd.py to bdgpeakcall_cmd.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/callpeak_cmd.py to callpeak_cmd.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/cmbreps_cmd.py to cmbreps_cmd.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/diffpeak_cmd.py to diffpeak_cmd.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/filterdup_cmd.py to filterdup_cmd.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/OptValidator.py to OptValidator.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/OutputWriter.py to OutputWriter.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/pileup_cmd.py to pileup_cmd.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/predictd_cmd.py to predictd_cmd.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/randsample_cmd.py to randsample_cmd.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/refinepeak_cmd.py to refinepeak_cmd.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO/BinKeeper.py to BinKeeper.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/data/__init__.py to __init__.pyc
running install_egg_info
running egg_info
writing requirements to MACS2.egg-info/requires.txt
writing MACS2.egg-info/PKG-INFO
writing top-level names to MACS2.egg-info/top_level.txt
writing dependency_links to MACS2.egg-info/dependency_links.txt
reading manifest file 'MACS2.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'MANIFEST'
no previously-included directories found matching 'test'
writing manifest file 'MACS2.egg-info/SOURCES.txt'
Copying MACS2.egg-info to /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2-2.1.1.20160309.egg-info
Skipping SOURCES.txt
running install_scripts
creating /<<PKGBUILDDIR>>/debian/macs/usr/bin
copying build/scripts-2.7/macs2 -> /<<PKGBUILDDIR>>/debian/macs/usr/bin
changing mode of /<<PKGBUILDDIR>>/debian/macs/usr/bin/macs2 to 775
dh_installdocs -a -O--buildsystem=pybuild
dh_installchangelogs -a -O--buildsystem=pybuild
dh_installman -a -O--buildsystem=pybuild
dh_python2 -a -O--buildsystem=pybuild
I: dh_python2 fs:328: renaming PeakDetect.so to PeakDetect.arm-linux-gnueabihf.so
I: dh_python2 fs:328: renaming PeakModel.so to PeakModel.arm-linux-gnueabihf.so
I: dh_python2 fs:328: renaming Pileup.so to Pileup.arm-linux-gnueabihf.so
I: dh_python2 fs:328: renaming Prob.so to Prob.arm-linux-gnueabihf.so
I: dh_python2 fs:328: renaming Signal.so to Signal.arm-linux-gnueabihf.so
I: dh_python2 fs:328: renaming Statistics.so to Statistics.arm-linux-gnueabihf.so
I: dh_python2 fs:328: renaming hashtable.so to hashtable.arm-linux-gnueabihf.so
I: dh_python2 fs:328: renaming BedGraph.so to BedGraph.arm-linux-gnueabihf.so
I: dh_python2 fs:328: renaming BedGraphIO.so to BedGraphIO.arm-linux-gnueabihf.so
I: dh_python2 fs:328: renaming CallPeakUnit.so to CallPeakUnit.arm-linux-gnueabihf.so
I: dh_python2 fs:328: renaming FixWidthTrack.so to FixWidthTrack.arm-linux-gnueabihf.so
I: dh_python2 fs:328: renaming PairedEndTrack.so to PairedEndTrack.arm-linux-gnueabihf.so
I: dh_python2 fs:328: renaming Parser.so to Parser.arm-linux-gnueabihf.so
I: dh_python2 fs:328: renaming PeakIO.so to PeakIO.arm-linux-gnueabihf.so
I: dh_python2 fs:328: renaming ScoreTrack.so to ScoreTrack.arm-linux-gnueabihf.so
dh_lintian -a -O--buildsystem=pybuild
dh_perl -a -O--buildsystem=pybuild
dh_link -a -O--buildsystem=pybuild
dh_strip_nondeterminism -a -O--buildsystem=pybuild
dh_compress -a -O--buildsystem=pybuild
dh_fixperms -a -O--buildsystem=pybuild
dh_strip -a -O--buildsystem=pybuild
dh_makeshlibs -a -O--buildsystem=pybuild
dh_shlibdeps -a -O--buildsystem=pybuild
dh_installdeb -a -O--buildsystem=pybuild
dh_gencontrol -a -O--buildsystem=pybuild
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package macs: unused substitution variable ${python:Versions}
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package macs: unused substitution variable ${python:Versions}
dh_md5sums -a -O--buildsystem=pybuild
dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'macs-dbgsym' in '../macs-dbgsym_2.1.1.20160309-1_armhf.deb'.
dpkg-deb: building package 'macs' in '../macs_2.1.1.20160309-1_armhf.deb'.
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../macs_2.1.1.20160309-1_armhf.changes
dpkg-genchanges: warning: package macs-dbgsym listed in files list but not in control info
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build macs-2.1.1.20160309
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 20160519-1157
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
macs_2.1.1.20160309-1_armhf.changes:
------------------------------------
Format: 1.8
Date: Fri, 13 May 2016 10:49:54 -0700
Source: macs
Binary: macs
Architecture: armhf
Version: 2.1.1.20160309-1
Distribution: stretch-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Michael R. Crusoe <michael.crusoe@gmail.com>
Description:
macs - Model-based Analysis of ChIP-Seq on short reads sequencers
Changes:
macs (2.1.1.20160309-1) unstable; urgency=medium
.
* New upstream release.
* Bump Standards-Version to 3.9.8
* Refresh & re-submit spelling patch
* enable "bindnow" linker flag hardening
Checksums-Sha1:
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24fa1c889dbb0e4bc86aa482750d0323c0ab1648 919010 macs_2.1.1.20160309-1_armhf.deb
Checksums-Sha256:
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e85df527d9548bdfa0d1e0fa635cc9a5d467a948592ca7a774e4b84bc0d8ec91 919010 macs_2.1.1.20160309-1_armhf.deb
Files:
6dbfa28886e03264e5bd89e94f09f9ac 3038968 debug extra macs-dbgsym_2.1.1.20160309-1_armhf.deb
295a8725e64301fa5053e0c5a9389b13 919010 science optional macs_2.1.1.20160309-1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
macs-dbgsym_2.1.1.20160309-1_armhf.deb
--------------------------------------
new debian package, version 2.0.
size 3038968 bytes: control archive=1252 bytes.
989 bytes, 13 lines control
1590 bytes, 15 lines md5sums
Package: macs-dbgsym
Source: macs
Version: 2.1.1.20160309-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 3336
Depends: macs (= 2.1.1.20160309-1)
Section: debug
Priority: extra
Homepage: http://github.com/taoliu/MACS/
Description: Debug symbols for macs
Auto-Built-Package: debug-symbols
Build-Ids: 068fd723dee34c2b5c3e63957ed6c2ae225028ae 0f4406c7b57ee207094ebc0a983ef790688b6050 1eba8d7f3c1c119e7236675418d166258d45baf1 286d0dc8a89cea27f4f0ca5f0d152207ba1efa34 2b32370e91f82b7782842e560e49bc6707f97268 395161b70b139473d1cdf3f9e9d270ea2f70baba 59b2d38c1e9d7aa9d0da38f64d88c9125d6a6034 61845066d33a8e71d5efeb8fdfe3d727670e8495 6f91dd6794aaef61612854c4175c3c8f8a519816 90578200f5f354e0c5380b80926ac501a00de8ee b3554ba0138300c23c89838e1194d857595420c6 bd888b91008f2e7b0555f652794466dc193e2591 f837de9616bb432d730b16fdaf1171feea0cd9f3 fb01fb672d772590bf8463154f37448ece682472 fccd8dcbb910cb103430763b09bdfa7b21f22116
drwxr-xr-x root/root 0 2016-05-19 11:56 ./
drwxr-xr-x root/root 0 2016-05-19 11:56 ./usr/
drwxr-xr-x root/root 0 2016-05-19 11:56 ./usr/lib/
drwxr-xr-x root/root 0 2016-05-19 11:56 ./usr/lib/debug/
drwxr-xr-x root/root 0 2016-05-19 11:56 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2016-05-19 11:56 ./usr/lib/debug/.build-id/06/
-rw-r--r-- root/root 198688 2016-05-19 11:56 ./usr/lib/debug/.build-id/06/8fd723dee34c2b5c3e63957ed6c2ae225028ae.debug
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macs_2.1.1.20160309-1_armhf.deb
-------------------------------
new debian package, version 2.0.
size 919010 bytes: control archive=2950 bytes.
979 bytes, 18 lines control
5484 bytes, 62 lines md5sums
152 bytes, 9 lines * postinst #!/bin/sh
243 bytes, 14 lines * prerm #!/bin/sh
Package: macs
Version: 2.1.1.20160309-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 3471
Depends: cython, python (<< 2.8), python (>= 2.7~), python-numpy, python:any (>= 2.7.5-5~), libc6 (>= 2.15)
Section: science
Priority: optional
Homepage: http://github.com/taoliu/MACS/
Description: Model-based Analysis of ChIP-Seq on short reads sequencers
MACS empirically models the length of the sequenced ChIP fragments, which
tends to be shorter than sonication or library construction size estimates,
and uses it to improve the spatial resolution of predicted binding sites.
MACS also uses a dynamic Poisson distribution to effectively capture local
biases in the genome sequence, allowing for more sensitive and robust
prediction. MACS compares favorably to existing ChIP-Seq peak-finding
algorithms, is publicly available open source, and can be used for ChIP-Seq
with or without control samples.
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| Post Build |
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| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
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| Summary |
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Build Architecture: armhf
Build-Space: 55456
Build-Time: 1273
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 434
Job: macs_2.1.1.20160309-1
Machine Architecture: armhf
Package: macs
Package-Time: 1748
Source-Version: 2.1.1.20160309-1
Space: 55456
Status: successful
Version: 2.1.1.20160309-1
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Finished at 20160519-1157
Build needed 00:29:08, 55456k disc space