macs →
2.1.1.20160226-1 →
armhf → 2016-03-11 14:41:36
sbuild (Debian sbuild) 0.66.0 (04 Oct 2015) on bm-wb-02
+==============================================================================+
| macs 2.1.1.20160226-1 (armhf) 11 Mar 2016 13:48 |
+==============================================================================+
Package: macs
Version: 2.1.1.20160226-1
Source Version: 2.1.1.20160226-1
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'build/macs-EFsx6R/macs-2.1.1.20160226' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/macs-EFsx6R' with '<<BUILDDIR>>'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-27ed8b02-8054-4800-8703-8ed02b9d0938' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private stretch-staging/main Sources [8793 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf Packages [10.9 MB]
Fetched 19.7 MB in 21s (931 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'macs' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/macs.git
Please use:
git clone https://anonscm.debian.org/git/debian-med/macs.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 1628 kB of source archives.
Get:1 http://172.17.0.1/private stretch-staging/main macs 2.1.1.20160226-1 (dsc) [2093 B]
Get:2 http://172.17.0.1/private stretch-staging/main macs 2.1.1.20160226-1 (tar) [1617 kB]
Get:3 http://172.17.0.1/private stretch-staging/main macs 2.1.1.20160226-1 (diff) [9068 B]
Fetched 1628 kB in 0s (9041 kB/s)
Download complete and in download only mode
Check architectures
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Check dependencies
------------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-HwuIUS/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Get:1 file:/<<BUILDDIR>>/resolver-HwuIUS/apt_archive ./ InRelease
Ign:1 file:/<<BUILDDIR>>/resolver-HwuIUS/apt_archive ./ InRelease
Get:2 file:/<<BUILDDIR>>/resolver-HwuIUS/apt_archive ./ Release [2119 B]
Get:2 file:/<<BUILDDIR>>/resolver-HwuIUS/apt_archive ./ Release [2119 B]
Get:3 file:/<<BUILDDIR>>/resolver-HwuIUS/apt_archive ./ Release.gpg [299 B]
Get:3 file:/<<BUILDDIR>>/resolver-HwuIUS/apt_archive ./ Release.gpg [299 B]
Get:4 file:/<<BUILDDIR>>/resolver-HwuIUS/apt_archive ./ Sources [194 B]
Get:5 file:/<<BUILDDIR>>/resolver-HwuIUS/apt_archive ./ Packages [505 B]
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Reading package lists...
+------------------------------------------------------------------------------+
| Install core build dependencies (apt-based resolver) |
+------------------------------------------------------------------------------+
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 75 not upgraded.
Need to get 0 B/764 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 file:/<<BUILDDIR>>/resolver-HwuIUS/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [764 B]
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package sbuild-build-depends-core-dummy.
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Merged Build-Depends: debhelper (>= 9), dh-python, python-all-dev, python-numpy, python-setuptools, help2man, cython
Filtered Build-Depends: debhelper (>= 9), dh-python, python-all-dev, python-numpy, python-setuptools, help2man, cython
dpkg-deb: building package 'sbuild-build-depends-macs-dummy' in '/<<BUILDDIR>>/resolver-M9B00D/apt_archive/sbuild-build-depends-macs-dummy.deb'.
OK
Get:1 file:/<<BUILDDIR>>/resolver-M9B00D/apt_archive ./ InRelease
Ign:1 file:/<<BUILDDIR>>/resolver-M9B00D/apt_archive ./ InRelease
Get:2 file:/<<BUILDDIR>>/resolver-M9B00D/apt_archive ./ Release [2119 B]
Get:2 file:/<<BUILDDIR>>/resolver-M9B00D/apt_archive ./ Release [2119 B]
Get:3 file:/<<BUILDDIR>>/resolver-M9B00D/apt_archive ./ Release.gpg [299 B]
Get:3 file:/<<BUILDDIR>>/resolver-M9B00D/apt_archive ./ Release.gpg [299 B]
Get:4 file:/<<BUILDDIR>>/resolver-M9B00D/apt_archive ./ Sources [226 B]
Get:5 file:/<<BUILDDIR>>/resolver-M9B00D/apt_archive ./ Packages [545 B]
Reading package lists...
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Reading package lists...
+------------------------------------------------------------------------------+
| Install macs build dependencies (apt-based resolver) |
+------------------------------------------------------------------------------+
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
autotools-dev bsdmainutils cpp-5 cython debhelper dh-python
dh-strip-nondeterminism file g++-5 gcc-5 gcc-5-base gettext gettext-base
groff-base help2man intltool-debian libarchive-zip-perl libasan2 libatomic1
libblas-common libblas3 libcc1-0 libcroco3 libexpat1 libexpat1-dev libffi6
libfile-stripnondeterminism-perl libgcc-5-dev libgcc1 libgfortran3
libglib2.0-0 libgomp1 libicu55 liblapack3 liblocale-gettext-perl libmagic1
libmpdec2 libpipeline1 libpython-all-dev libpython-dev libpython-stdlib
libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib
libpython3-stdlib libpython3.5-minimal libpython3.5-stdlib libsqlite3-0
libssl1.0.2 libstdc++-5-dev libstdc++6 libubsan0 libunistring0 libxml2
man-db mime-support po-debconf python python-all python-all-dev python-dev
python-minimal python-numpy python-pkg-resources python-setuptools python2.7
python2.7-dev python2.7-minimal python3 python3-minimal python3.5
python3.5-minimal
Suggested packages:
wamerican | wordlist whois vacation gcc-5-locales cython-doc dh-make
gcc-5-doc libstdc++6-5-dbg libgcc1-dbg libgomp1-dbg libitm1-dbg
libatomic1-dbg libasan2-dbg liblsan0-dbg libtsan0-dbg libubsan0-dbg
libcilkrts5-dbg libmpx0-dbg libquadmath0-dbg gettext-doc autopoint
libasprintf-dev libgettextpo-dev groff libstdc++-5-doc less www-browser
libmail-box-perl python-doc python-tk gfortran python-nose python-numpy-dbg
python-numpy-doc python-setuptools-doc python2.7-doc binfmt-support
python3-doc python3-tk python3-venv python3.5-venv python3.5-doc
Recommended packages:
curl | wget | lynx-cur libglib2.0-data shared-mime-info xdg-user-dirs
xml-core libmail-sendmail-perl
The following NEW packages will be installed:
autotools-dev bsdmainutils cython debhelper dh-python
dh-strip-nondeterminism file gettext gettext-base groff-base help2man
intltool-debian libarchive-zip-perl libblas-common libblas3 libcroco3
libexpat1 libexpat1-dev libffi6 libfile-stripnondeterminism-perl
libgfortran3 libglib2.0-0 libicu55 liblapack3 liblocale-gettext-perl
libmagic1 libmpdec2 libpipeline1 libpython-all-dev libpython-dev
libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal
libpython2.7-stdlib libpython3-stdlib libpython3.5-minimal
libpython3.5-stdlib libsqlite3-0 libssl1.0.2 libunistring0 libxml2 man-db
mime-support po-debconf python python-all python-all-dev python-dev
python-minimal python-numpy python-pkg-resources python-setuptools python2.7
python2.7-dev python2.7-minimal python3 python3-minimal python3.5
python3.5-minimal sbuild-build-depends-macs-dummy
The following packages will be upgraded:
cpp-5 g++-5 gcc-5 gcc-5-base libasan2 libatomic1 libcc1-0 libgcc-5-dev
libgcc1 libgomp1 libstdc++-5-dev libstdc++6 libubsan0
13 upgraded, 61 newly installed, 0 to remove and 62 not upgraded.
Need to get 133 MB/133 MB of archives.
After this operation, 162 MB of additional disk space will be used.
Get:1 file:/<<BUILDDIR>>/resolver-M9B00D/apt_archive ./ sbuild-build-depends-macs-dummy 0.invalid.0 [806 B]
Get:2 http://172.17.0.1/private stretch-staging/main armhf liblocale-gettext-perl armhf 1.07-1+b1 [18.0 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf libgomp1 armhf 5.3.1-10 [47.2 kB]
Get:4 http://172.17.0.1/private stretch-staging/main armhf libatomic1 armhf 5.3.1-10 [6550 B]
Get:5 http://172.17.0.1/private stretch-staging/main armhf gcc-5-base armhf 5.3.1-10 [169 kB]
Get:6 http://172.17.0.1/private stretch-staging/main armhf libgcc1 armhf 1:5.3.1-10 [38.4 kB]
Get:7 http://172.17.0.1/private stretch-staging/main armhf libasan2 armhf 5.3.1-10 [227 kB]
Get:8 http://172.17.0.1/private stretch-staging/main armhf libubsan0 armhf 5.3.1-10 [84.3 kB]
Get:9 http://172.17.0.1/private stretch-staging/main armhf cpp-5 armhf 5.3.1-10 [22.9 MB]
Get:10 http://172.17.0.1/private stretch-staging/main armhf libcc1-0 armhf 5.3.1-10 [24.8 kB]
Get:11 http://172.17.0.1/private stretch-staging/main armhf g++-5 armhf 5.3.1-10 [24.5 MB]
Get:12 http://172.17.0.1/private stretch-staging/main armhf gcc-5 armhf 5.3.1-10 [23.0 MB]
Get:13 http://172.17.0.1/private stretch-staging/main armhf libgcc-5-dev armhf 5.3.1-10 [448 kB]
Get:14 http://172.17.0.1/private stretch-staging/main armhf libstdc++-5-dev armhf 5.3.1-10 [1430 kB]
Get:15 http://172.17.0.1/private stretch-staging/main armhf libstdc++6 armhf 5.3.1-10 [326 kB]
Get:16 http://172.17.0.1/private stretch-staging/main armhf groff-base armhf 1.22.3-7 [1083 kB]
Get:17 http://172.17.0.1/private stretch-staging/main armhf bsdmainutils armhf 9.0.6 [177 kB]
Get:18 http://172.17.0.1/private stretch-staging/main armhf libpipeline1 armhf 1.4.1-2 [23.7 kB]
Get:19 http://172.17.0.1/private stretch-staging/main armhf man-db armhf 2.7.5-1 [975 kB]
Get:20 http://172.17.0.1/private stretch-staging/main armhf libpython2.7-minimal armhf 2.7.11-4 [381 kB]
Get:21 http://172.17.0.1/private stretch-staging/main armhf python2.7-minimal armhf 2.7.11-4 [1092 kB]
Get:22 http://172.17.0.1/private stretch-staging/main armhf python-minimal armhf 2.7.11-1 [40.0 kB]
Get:23 http://172.17.0.1/private stretch-staging/main armhf mime-support all 3.59 [36.4 kB]
Get:24 http://172.17.0.1/private stretch-staging/main armhf libexpat1 armhf 2.1.0-7 [59.8 kB]
Get:25 http://172.17.0.1/private stretch-staging/main armhf libffi6 armhf 3.2.1-4 [18.5 kB]
Get:26 http://172.17.0.1/private stretch-staging/main armhf libsqlite3-0 armhf 3.10.2-1 [408 kB]
Get:27 http://172.17.0.1/private stretch-staging/main armhf libssl1.0.2 armhf 1.0.2g-1 [886 kB]
Get:28 http://172.17.0.1/private stretch-staging/main armhf libpython2.7-stdlib armhf 2.7.11-4 [1818 kB]
Get:29 http://172.17.0.1/private stretch-staging/main armhf python2.7 armhf 2.7.11-4 [267 kB]
Get:30 http://172.17.0.1/private stretch-staging/main armhf libpython-stdlib armhf 2.7.11-1 [19.5 kB]
Get:31 http://172.17.0.1/private stretch-staging/main armhf python armhf 2.7.11-1 [150 kB]
Get:32 http://172.17.0.1/private stretch-staging/main armhf libmpdec2 armhf 2.4.1-1 [65.8 kB]
Get:33 http://172.17.0.1/private stretch-staging/main armhf libunistring0 armhf 0.9.3-5.2 [253 kB]
Get:34 http://172.17.0.1/private stretch-staging/main armhf libpython3.5-minimal armhf 3.5.1-5 [553 kB]
Get:35 http://172.17.0.1/private stretch-staging/main armhf python3.5-minimal armhf 3.5.1-5 [1333 kB]
Get:36 http://172.17.0.1/private stretch-staging/main armhf python3-minimal armhf 3.5.1-2 [35.2 kB]
Get:37 http://172.17.0.1/private stretch-staging/main armhf libpython3.5-stdlib armhf 3.5.1-5 [2063 kB]
Get:38 http://172.17.0.1/private stretch-staging/main armhf python3.5 armhf 3.5.1-5 [194 kB]
Get:39 http://172.17.0.1/private stretch-staging/main armhf libpython3-stdlib armhf 3.5.1-2 [18.5 kB]
Get:40 http://172.17.0.1/private stretch-staging/main armhf dh-python all 2.20151103 [76.9 kB]
Get:41 http://172.17.0.1/private stretch-staging/main armhf python3 armhf 3.5.1-2 [21.5 kB]
Get:42 http://172.17.0.1/private stretch-staging/main armhf libmagic1 armhf 1:5.25-2 [250 kB]
Get:43 http://172.17.0.1/private stretch-staging/main armhf file armhf 1:5.25-2 [61.2 kB]
Get:44 http://172.17.0.1/private stretch-staging/main armhf gettext-base armhf 0.19.7-2 [111 kB]
Get:45 http://172.17.0.1/private stretch-staging/main armhf libpython2.7 armhf 2.7.11-4 [907 kB]
Get:46 http://172.17.0.1/private stretch-staging/main armhf libicu55 armhf 55.1-7 [7380 kB]
Get:47 http://172.17.0.1/private stretch-staging/main armhf libxml2 armhf 2.9.3+dfsg1-1 [800 kB]
Get:48 http://172.17.0.1/private stretch-staging/main armhf autotools-dev all 20150820.1 [71.7 kB]
Get:49 http://172.17.0.1/private stretch-staging/main armhf cython armhf 0.23.4+git4-g7eed8d8-1 [1446 kB]
Get:50 http://172.17.0.1/private stretch-staging/main armhf libglib2.0-0 armhf 2.46.2-3 [2482 kB]
Get:51 http://172.17.0.1/private stretch-staging/main armhf libcroco3 armhf 0.6.11-1 [131 kB]
Get:52 http://172.17.0.1/private stretch-staging/main armhf gettext armhf 0.19.7-2 [1400 kB]
Get:53 http://172.17.0.1/private stretch-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:54 http://172.17.0.1/private stretch-staging/main armhf po-debconf all 1.0.19 [249 kB]
Get:55 http://172.17.0.1/private stretch-staging/main armhf libarchive-zip-perl all 1.56-2 [94.9 kB]
Get:56 http://172.17.0.1/private stretch-staging/main armhf libfile-stripnondeterminism-perl all 0.016-1 [11.9 kB]
Get:57 http://172.17.0.1/private stretch-staging/main armhf dh-strip-nondeterminism all 0.016-1 [6998 B]
Get:58 http://172.17.0.1/private stretch-staging/main armhf debhelper all 9.20160115 [827 kB]
Get:59 http://172.17.0.1/private stretch-staging/main armhf help2man armhf 1.47.3 [154 kB]
Get:60 http://172.17.0.1/private stretch-staging/main armhf libblas-common armhf 3.6.0-2 [13.5 kB]
Get:61 http://172.17.0.1/private stretch-staging/main armhf libgfortran3 armhf 5.3.1-10 [153 kB]
Get:62 http://172.17.0.1/private stretch-staging/main armhf libblas3 armhf 3.6.0-2 [110 kB]
Get:63 http://172.17.0.1/private stretch-staging/main armhf libexpat1-dev armhf 2.1.0-7 [114 kB]
Get:64 http://172.17.0.1/private stretch-staging/main armhf liblapack3 armhf 3.6.0-2 [1382 kB]
Get:65 http://172.17.0.1/private stretch-staging/main armhf libpython2.7-dev armhf 2.7.11-4 [27.1 MB]
Get:66 http://172.17.0.1/private stretch-staging/main armhf libpython-dev armhf 2.7.11-1 [19.6 kB]
Get:67 http://172.17.0.1/private stretch-staging/main armhf libpython-all-dev armhf 2.7.11-1 [958 B]
Get:68 http://172.17.0.1/private stretch-staging/main armhf python-all armhf 2.7.11-1 [940 B]
Get:69 http://172.17.0.1/private stretch-staging/main armhf python2.7-dev armhf 2.7.11-4 [279 kB]
Get:70 http://172.17.0.1/private stretch-staging/main armhf python-dev armhf 2.7.11-1 [1138 B]
Get:71 http://172.17.0.1/private stretch-staging/main armhf python-all-dev armhf 2.7.11-1 [962 B]
Get:72 http://172.17.0.1/private stretch-staging/main armhf python-numpy armhf 1:1.10.4-2 [1551 kB]
Get:73 http://172.17.0.1/private stretch-staging/main armhf python-pkg-resources all 18.8-1 [100 kB]
Get:74 http://172.17.0.1/private stretch-staging/main armhf python-setuptools all 18.8-1 [202 kB]
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W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 3.19.0-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.26-3 dpkg-dev_1.18.4 g++-5_5.3.1-10 gcc-5_5.3.1-10 libc6-dev_2.21-7 libstdc++-4.9-dev_4.9.3-10 libstdc++-5-dev_5.3.1-10 libstdc++6_5.3.1-10 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: acl_2.2.52-3 adduser_3.113+nmu3 apt_1.2.3 autotools-dev_20150820.1 base-files_9.5+rpi1 base-passwd_3.5.39 bash_4.3-14 binutils_2.26-3 bsdmainutils_9.0.6 bsdutils_1:2.27.1-3 build-essential_11.7 bzip2_1.0.6-8 coreutils_8.24-1 cpio_2.11+dfsg-4.1 cpp_4:5.3.1-1+rpi1 cpp-5_5.3.1-10 cython_0.23.4+git4-g7eed8d8-1 dash_0.5.8-2.1 debconf_1.5.58 debfoster_2.7-2 debhelper_9.20160115 debianutils_4.7 dh-python_2.20151103 dh-strip-nondeterminism_0.016-1 diffutils_1:3.3-3 dmsetup_2:1.02.115-2 dpkg_1.18.4 dpkg-dev_1.18.4 e2fslibs_1.42.13-1 e2fsprogs_1.42.13-1 fakeroot_1.20.2-1 file_1:5.25-2 findutils_4.6.0+git+20160126-2 g++_4:5.3.1-1+rpi1 g++-5_5.3.1-10 gcc_4:5.3.1-1+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-10 gcc-5_5.3.1-10 gcc-5-base_5.3.1-10 gettext_0.19.7-2 gettext-base_0.19.7-2 gnupg_1.4.20-1 gpgv_1.4.20-1 grep_2.22-1 groff-base_1.22.3-7 gzip_1.6-4 help2man_1.47.3 hostname_3.16 init_1.24 init-system-helpers_1.24 initramfs-tools_0.120 initscripts_2.88dsf-59.2 insserv_1.14.0-5.2 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-7+rpi1 kmod_22-1 libacl1_2.2.52-3 libapparmor1_2.10-3 libapt-pkg4.12_1.0.9.10 libapt-pkg5.0_1.2.3 libarchive-zip-perl_1.56-2 libasan1_4.9.3-10 libasan2_5.3.1-10 libatomic1_5.3.1-10 libattr1_1:2.4.47-2 libaudit-common_1:2.4.5-1 libaudit1_1:2.4.5-1 libblas-common_3.6.0-2 libblas3_3.6.0-2 libblkid1_2.27.1-3 libbz2-1.0_1.0.6-8 libc-bin_2.21-7 libc-dev-bin_2.21-7 libc6_2.21-7 libc6-dev_2.21-7 libcap2_1:2.24-12 libcap2-bin_1:2.24-12 libcc1-0_5.3.1-10 libcomerr2_1.42.13-1 libcroco3_0.6.11-1 libcryptsetup4_2:1.7.0-2 libdb5.3_5.3.28-11 libdbus-1-3_1.10.6-1 libdebconfclient0_0.204 libdevmapper1.02.1_2:1.02.115-2 libdpkg-perl_1.18.4 libdrm2_2.4.66-2 libexpat1_2.1.0-7 libexpat1-dev_2.1.0-7 libfakeroot_1.20.2-1 libfdisk1_2.27.1-3 libffi6_3.2.1-4 libfile-stripnondeterminism-perl_0.016-1 libgc1c2_1:7.4.2-7.3 libgcc-4.9-dev_4.9.3-10 libgcc-5-dev_5.3.1-10 libgcc1_1:5.3.1-10 libgcrypt20_1.6.4-5 libgdbm3_1.8.3-13.1 libgfortran3_5.3.1-10 libglib2.0-0_2.46.2-3 libgmp10_2:6.1.0+dfsg-2 libgomp1_5.3.1-10 libgpg-error0_1.21-1 libicu55_55.1-7 libisl15_0.16.1-1 libklibc_2.0.4-7+rpi1 libkmod2_22-1 liblapack3_3.6.0-2 liblocale-gettext-perl_1.07-1+b1 liblz4-1_0.0~r131-1 liblzma5_5.1.1alpha+20120614-2.1 libmagic1_1:5.25-2 libmount1_2.27.1-3 libmpc3_1.0.3-1 libmpdec2_2.4.1-1 libmpfr4_3.1.3-2 libncurses5_6.0+20151024-2 libncursesw5_6.0+20151024-2 libpam-modules_1.1.8-3.2 libpam-modules-bin_1.1.8-3.2 libpam-runtime_1.1.8-3.2 libpam0g_1.1.8-3.2 libpcre3_2:8.38-1 libperl5.22_5.22.1-5 libpipeline1_1.4.1-2 libpng12-0_1.2.54-1 libprocps3_2:3.3.9-9 libprocps5_2:3.3.11-3 libpython-all-dev_2.7.11-1 libpython-dev_2.7.11-1 libpython-stdlib_2.7.11-1 libpython2.7_2.7.11-4 libpython2.7-dev_2.7.11-4 libpython2.7-minimal_2.7.11-4 libpython2.7-stdlib_2.7.11-4 libpython3-stdlib_3.5.1-2 libpython3.5-minimal_3.5.1-5 libpython3.5-stdlib_3.5.1-5 libreadline6_6.3-8+b3 libseccomp2_2.2.3-2 libselinux1_2.4-3 libsemanage-common_2.4-3 libsemanage1_2.4-3 libsepol1_2.4-2 libslang2_2.3.0-2+b1 libsmartcols1_2.27.1-3 libsqlite3-0_3.10.2-1 libss2_1.42.13-1 libssl1.0.2_1.0.2g-1 libstdc++-4.9-dev_4.9.3-10 libstdc++-5-dev_5.3.1-10 libstdc++6_5.3.1-10 libsystemd0_228-6 libtimedate-perl_2.3000-2 libtinfo5_6.0+20151024-2 libubsan0_5.3.1-10 libudev1_228-6 libunistring0_0.9.3-5.2 libusb-0.1-4_2:0.1.12-28 libustr-1.0-1_1.0.4-5 libuuid1_2.27.1-3 libxml2_2.9.3+dfsg1-1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.2-3.1 lsb-base_9.20160110+rpi1 make_4.1-5 makedev_2.3.1-93 man-db_2.7.5-1 manpages_4.04-1 mawk_1.3.3-17 mime-support_3.59 mount_2.27.1-3 multiarch-support_2.21-7 nano_2.5.1-1 ncurses-base_6.0+20151024-2 ncurses-bin_6.0+20151024-2 passwd_1:4.2-3.1 patch_2.7.5-1 perl_5.22.1-5 perl-base_5.22.1-5 perl-modules-5.22_5.22.1-7 po-debconf_1.0.19 procps_2:3.3.11-3 python_2.7.11-1 python-all_2.7.11-1 python-all-dev_2.7.11-1 python-dev_2.7.11-1 python-minimal_2.7.11-1 python-numpy_1:1.10.4-2 python-pkg-resources_18.8-1 python-setuptools_18.8-1 python2.7_2.7.11-4 python2.7-dev_2.7.11-4 python2.7-minimal_2.7.11-4 python3_3.5.1-2 python3-minimal_3.5.1-2 python3.5_3.5.1-5 python3.5-minimal_3.5.1-5 raspbian-archive-keyring_20120528.2 readline-common_6.3-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-macs-dummy_0.invalid.0 sed_4.2.2-6.1 sensible-utils_0.0.9 startpar_0.59-3 systemd_228-6 systemd-sysv_228-6 sysv-rc_2.88dsf-59.2 sysvinit-utils_2.88dsf-59.2 tar_1.28-2.1 tzdata_2016a-1 udev_228-6 util-linux_2.27.1-3 xz-utils_5.1.1alpha+20120614-2.1 zlib1g_1:1.2.8.dfsg-2+b1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Sat Mar 5 17:53:39 2016 UTC using RSA key ID 6C67E6E2
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./macs_2.1.1.20160226-1.dsc
dpkg-source: info: extracting macs in macs-2.1.1.20160226
dpkg-source: info: unpacking macs_2.1.1.20160226.orig.tar.gz
dpkg-source: info: unpacking macs_2.1.1.20160226-1.debian.tar.xz
dpkg-source: info: applying spelling
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LOGNAME=root
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-27ed8b02-8054-4800-8703-8ed02b9d0938
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: source package macs
dpkg-buildpackage: source version 2.1.1.20160226-1
dpkg-buildpackage: source distribution unstable
dpkg-source --before-build macs-2.1.1.20160226
dpkg-buildpackage: host architecture armhf
fakeroot debian/rules clean
dh clean --with python2 --buildsystem=pybuild
dh_testdir -O--buildsystem=pybuild
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
I: pybuild base:184: python2.7 setup.py clean
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build' (and everything under it)
'build/bdist.linux-armv7l' does not exist -- can't clean it
'build/scripts-2.7' does not exist -- can't clean it
rm -f debian/*.1 debian/*-man-include
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_clean -O--buildsystem=pybuild
debian/rules build-arch
dh build-arch --with python2 --buildsystem=pybuild
dh_testdir -a -O--buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:184: python2.7 setup.py config
running config
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
for pyx in `find MACS2/ -name "*.pyx" | grep -v khash`; do \
rm -f ${pyx%%.pyx}.{h,c}; touch ${pyx}; done
cp setup.py setup.py.orig
cp setup_w_cython.py setup.py
dh_auto_build
I: pybuild base:184: /usr/bin/python setup.py build
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2
copying MACS2/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2
copying MACS2/bdgbroadcall_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2
copying MACS2/bdgcmp_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2
copying MACS2/bdgdiff_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2
copying MACS2/bdgopt_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2
copying MACS2/bdgpeakcall_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2
copying MACS2/callpeak_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2
copying MACS2/cmbreps_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2
copying MACS2/Constants.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2
copying MACS2/diffpeak_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2
copying MACS2/filterdup_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2
copying MACS2/OptValidator.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2
copying MACS2/OutputWriter.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2
copying MACS2/pileup_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2
copying MACS2/predictd_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2
copying MACS2/randsample_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2
copying MACS2/refinepeak_cmd.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO
copying MACS2/IO/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO
copying MACS2/IO/BinKeeper.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO
copying MACS2/IO/test_processing.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO
copying MACS2/IO/test_threading.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO
creating /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/data
copying MACS2/data/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/data
copying MACS2/data/g0.01.dat -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/data
copying MACS2/data/g0.05.dat -> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/data
running build_ext
cythoning MACS2/Prob.pyx to MACS2/Prob.c
building 'MACS2.Prob' extension
creating build
creating build/temp.linux-armv7l-2.7
creating build/temp.linux-armv7l-2.7/MACS2
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/Prob.c -o build/temp.linux-armv7l-2.7/MACS2/Prob.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/Prob.o -lm -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/Prob.so
cythoning MACS2/IO/Parser.pyx to MACS2/IO/Parser.c
building 'MACS2.IO.Parser' extension
creating build/temp.linux-armv7l-2.7/MACS2/IO
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/IO/Parser.c -o build/temp.linux-armv7l-2.7/MACS2/IO/Parser.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/IO/Parser.o -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/Parser.so
cythoning MACS2/Pileup.pyx to MACS2/Pileup.c
building 'MACS2.Pileup' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/Pileup.c -o build/temp.linux-armv7l-2.7/MACS2/Pileup.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/cPosValCalculation.c -o build/temp.linux-armv7l-2.7/MACS2/cPosValCalculation.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/Pileup.o build/temp.linux-armv7l-2.7/MACS2/cPosValCalculation.o -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/Pileup.so
cythoning MACS2/PeakModel.pyx to MACS2/PeakModel.c
building 'MACS2.PeakModel' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/PeakModel.c -o build/temp.linux-armv7l-2.7/MACS2/PeakModel.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/PeakModel.o -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/PeakModel.so
cythoning MACS2/PeakDetect.pyx to MACS2/PeakDetect.c
building 'MACS2.PeakDetect' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c MACS2/PeakDetect.c -o build/temp.linux-armv7l-2.7/MACS2/PeakDetect.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/PeakDetect.o -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/PeakDetect.so
cythoning MACS2/Signal.pyx to MACS2/Signal.c
building 'MACS2.Signal' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/Signal.c -o build/temp.linux-armv7l-2.7/MACS2/Signal.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/Signal.o -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/Signal.so
cythoning MACS2/IO/PeakIO.pyx to MACS2/IO/PeakIO.c
building 'MACS2.IO.PeakIO' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c MACS2/IO/PeakIO.c -o build/temp.linux-armv7l-2.7/MACS2/IO/PeakIO.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/IO/PeakIO.o -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/PeakIO.so
cythoning MACS2/IO/BedGraphIO.pyx to MACS2/IO/BedGraphIO.c
building 'MACS2.IO.BedGraphIO' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c MACS2/IO/BedGraphIO.c -o build/temp.linux-armv7l-2.7/MACS2/IO/BedGraphIO.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/IO/BedGraphIO.o -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/BedGraphIO.so
cythoning MACS2/IO/FixWidthTrack.pyx to MACS2/IO/FixWidthTrack.c
building 'MACS2.IO.FixWidthTrack' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/IO/FixWidthTrack.c -o build/temp.linux-armv7l-2.7/MACS2/IO/FixWidthTrack.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/IO/FixWidthTrack.o -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/FixWidthTrack.so
cythoning MACS2/IO/PairedEndTrack.pyx to MACS2/IO/PairedEndTrack.c
building 'MACS2.IO.PairedEndTrack' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/IO/PairedEndTrack.c -o build/temp.linux-armv7l-2.7/MACS2/IO/PairedEndTrack.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/IO/PairedEndTrack.o -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/PairedEndTrack.so
cythoning MACS2/IO/BedGraph.pyx to MACS2/IO/BedGraph.c
building 'MACS2.IO.BedGraph' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c MACS2/IO/BedGraph.c -o build/temp.linux-armv7l-2.7/MACS2/IO/BedGraph.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/IO/BedGraph.o -lm -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/BedGraph.so
cythoning MACS2/IO/ScoreTrack.pyx to MACS2/IO/ScoreTrack.c
building 'MACS2.IO.ScoreTrack' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/IO/ScoreTrack.c -o build/temp.linux-armv7l-2.7/MACS2/IO/ScoreTrack.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/IO/ScoreTrack.o -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/ScoreTrack.so
cythoning MACS2/IO/CallPeakUnit.pyx to MACS2/IO/CallPeakUnit.c
building 'MACS2.IO.CallPeakUnit' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/IO/CallPeakUnit.c -o build/temp.linux-armv7l-2.7/MACS2/IO/CallPeakUnit.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/IO/CallPeakUnit.o -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/CallPeakUnit.so
cythoning MACS2/hashtable.pyx to MACS2/hashtable.c
building 'MACS2.hashtable' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS2/ -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/hashtable.c -o build/temp.linux-armv7l-2.7/MACS2/hashtable.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/hashtable.o -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/hashtable.so
cythoning MACS2/Statistics.pyx to MACS2/Statistics.c
building 'MACS2.Statistics' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS2/ -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/Statistics.c -o build/temp.linux-armv7l-2.7/MACS2/Statistics.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS2/ -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/cStatistics.c -o build/temp.linux-armv7l-2.7/MACS2/cStatistics.o -w -O3 -ffast-math
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/MACS2/Statistics.o build/temp.linux-armv7l-2.7/MACS2/cStatistics.o -lm -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/Statistics.so
running build_scripts
creating build/scripts-2.7
copying and adjusting bin/macs2 -> build/scripts-2.7
changing mode of build/scripts-2.7/macs2 from 664 to 775
PYTHONPATH=./.pybuild/pythonX.Y_2.7/build/ help2man \
--no-discard-stderr --no-info \
--name "macs2 \- Model\-based Analysis for ChIP\-Sequencing" "python bin/macs2" > debian/macs2.1
for subcommand in callpeak bdgpeakcall bdgbroadcall bdgcmp bdgopt cmbreps bdgdiff filterdup predictd pileup randsample refinepeak; do printf \
"[NAME]\nmacs2_${subcommand} \- Model\-based Analysis for ChIP\-Sequencing\n" \
> debian/macs2_${subcommand}-man-include; done
for subcommand in callpeak bdgpeakcall bdgbroadcall bdgcmp bdgopt cmbreps bdgdiff filterdup predictd pileup randsample refinepeak; do \
PYTHONPATH=./.pybuild/pythonX.Y_2.7/build/ help2man \
--no-discard-stderr --no-info --version-string="2.1.1.20160226" \
--include debian/macs2_${subcommand}-man-include \
"python bin/macs2 ${subcommand}" > \
debian/macs2_${subcommand}.1; done
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:184: cd /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build; python2.7 -m unittest discover -v
----------------------------------------------------------------------
Ran 0 tests in 0.000s
OK
fakeroot debian/rules binary-arch
dh binary-arch --with python2 --buildsystem=pybuild
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
dh_auto_install -a -O--buildsystem=pybuild
I: pybuild base:184: /usr/bin/python setup.py install --root /<<PKGBUILDDIR>>/debian/macs
running install
running build
running build_py
running build_ext
skipping 'MACS2/Prob.c' Cython extension (up-to-date)
skipping 'MACS2/IO/Parser.c' Cython extension (up-to-date)
skipping 'MACS2/Pileup.c' Cython extension (up-to-date)
skipping 'MACS2/PeakModel.c' Cython extension (up-to-date)
skipping 'MACS2/PeakDetect.c' Cython extension (up-to-date)
skipping 'MACS2/Signal.c' Cython extension (up-to-date)
skipping 'MACS2/IO/PeakIO.c' Cython extension (up-to-date)
skipping 'MACS2/IO/BedGraphIO.c' Cython extension (up-to-date)
skipping 'MACS2/IO/FixWidthTrack.c' Cython extension (up-to-date)
skipping 'MACS2/IO/PairedEndTrack.c' Cython extension (up-to-date)
skipping 'MACS2/IO/BedGraph.c' Cython extension (up-to-date)
skipping 'MACS2/IO/ScoreTrack.c' Cython extension (up-to-date)
skipping 'MACS2/IO/CallPeakUnit.c' Cython extension (up-to-date)
skipping 'MACS2/hashtable.c' Cython extension (up-to-date)
skipping 'MACS2/Statistics.c' Cython extension (up-to-date)
running build_scripts
running install_lib
creating /<<PKGBUILDDIR>>/debian/macs/usr
creating /<<PKGBUILDDIR>>/debian/macs/usr/lib
creating /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7
creating /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages
creating /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/__init__.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/bdgbroadcall_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/bdgcmp_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/bdgdiff_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/bdgopt_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/bdgpeakcall_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/callpeak_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/cmbreps_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/Constants.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/diffpeak_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/filterdup_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/OptValidator.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/OutputWriter.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/pileup_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/predictd_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/randsample_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/refinepeak_cmd.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
creating /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/__init__.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/BinKeeper.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/test_processing.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/test_threading.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/Parser.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/PeakIO.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/BedGraphIO.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/FixWidthTrack.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/PairedEndTrack.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/BedGraph.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/ScoreTrack.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/CallPeakUnit.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/__init__.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/test_processing.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/IO/test_threading.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO
creating /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/data/__init__.py -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/data/g0.01.dat -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/data/g0.05.dat -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/data
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/Prob.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/Pileup.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/PeakModel.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/PeakDetect.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/Signal.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/hashtable.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/Statistics.so -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/__init__.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/MACS2/Constants.pyc -> /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/bdgbroadcall_cmd.py to bdgbroadcall_cmd.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/bdgcmp_cmd.py to bdgcmp_cmd.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/bdgdiff_cmd.py to bdgdiff_cmd.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/bdgopt_cmd.py to bdgopt_cmd.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/bdgpeakcall_cmd.py to bdgpeakcall_cmd.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/callpeak_cmd.py to callpeak_cmd.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/cmbreps_cmd.py to cmbreps_cmd.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/diffpeak_cmd.py to diffpeak_cmd.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/filterdup_cmd.py to filterdup_cmd.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/OptValidator.py to OptValidator.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/OutputWriter.py to OutputWriter.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/pileup_cmd.py to pileup_cmd.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/predictd_cmd.py to predictd_cmd.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/randsample_cmd.py to randsample_cmd.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/refinepeak_cmd.py to refinepeak_cmd.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO/BinKeeper.py to BinKeeper.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2/data/__init__.py to __init__.pyc
running install_egg_info
running egg_info
writing requirements to MACS2.egg-info/requires.txt
writing MACS2.egg-info/PKG-INFO
writing top-level names to MACS2.egg-info/top_level.txt
writing dependency_links to MACS2.egg-info/dependency_links.txt
reading manifest file 'MACS2.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'MANIFEST'
no previously-included directories found matching 'test'
writing manifest file 'MACS2.egg-info/SOURCES.txt'
Copying MACS2.egg-info to /<<PKGBUILDDIR>>/debian/macs/usr/lib/python2.7/dist-packages/MACS2-2.1.1.20160226.egg-info
Skipping SOURCES.txt
running install_scripts
creating /<<PKGBUILDDIR>>/debian/macs/usr/bin
copying build/scripts-2.7/macs2 -> /<<PKGBUILDDIR>>/debian/macs/usr/bin
changing mode of /<<PKGBUILDDIR>>/debian/macs/usr/bin/macs2 to 775
dh_installdocs -a -O--buildsystem=pybuild
dh_installchangelogs -a -O--buildsystem=pybuild
dh_installman -a -O--buildsystem=pybuild
dh_python2 -a -O--buildsystem=pybuild
I: dh_python2 fs:328: renaming PeakDetect.so to PeakDetect.arm-linux-gnueabihf.so
I: dh_python2 fs:328: renaming PeakModel.so to PeakModel.arm-linux-gnueabihf.so
I: dh_python2 fs:328: renaming Pileup.so to Pileup.arm-linux-gnueabihf.so
I: dh_python2 fs:328: renaming Prob.so to Prob.arm-linux-gnueabihf.so
I: dh_python2 fs:328: renaming Signal.so to Signal.arm-linux-gnueabihf.so
I: dh_python2 fs:328: renaming Statistics.so to Statistics.arm-linux-gnueabihf.so
I: dh_python2 fs:328: renaming hashtable.so to hashtable.arm-linux-gnueabihf.so
I: dh_python2 fs:328: renaming BedGraph.so to BedGraph.arm-linux-gnueabihf.so
I: dh_python2 fs:328: renaming BedGraphIO.so to BedGraphIO.arm-linux-gnueabihf.so
I: dh_python2 fs:328: renaming CallPeakUnit.so to CallPeakUnit.arm-linux-gnueabihf.so
I: dh_python2 fs:328: renaming FixWidthTrack.so to FixWidthTrack.arm-linux-gnueabihf.so
I: dh_python2 fs:328: renaming PairedEndTrack.so to PairedEndTrack.arm-linux-gnueabihf.so
I: dh_python2 fs:328: renaming Parser.so to Parser.arm-linux-gnueabihf.so
I: dh_python2 fs:328: renaming PeakIO.so to PeakIO.arm-linux-gnueabihf.so
I: dh_python2 fs:328: renaming ScoreTrack.so to ScoreTrack.arm-linux-gnueabihf.so
dh_lintian -a -O--buildsystem=pybuild
dh_perl -a -O--buildsystem=pybuild
dh_link -a -O--buildsystem=pybuild
dh_strip_nondeterminism -a -O--buildsystem=pybuild
dh_compress -a -O--buildsystem=pybuild
dh_fixperms -a -O--buildsystem=pybuild
dh_strip -a -O--buildsystem=pybuild
dh_makeshlibs -a -O--buildsystem=pybuild
dh_shlibdeps -a -O--buildsystem=pybuild
dh_installdeb -a -O--buildsystem=pybuild
dh_gencontrol -a -O--buildsystem=pybuild
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package macs: unused substitution variable ${python:Versions}
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package macs: unused substitution variable ${python:Versions}
dh_md5sums -a -O--buildsystem=pybuild
dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'macs-dbgsym' in '../macs-dbgsym_2.1.1.20160226-1_armhf.deb'.
dpkg-deb: building package 'macs' in '../macs_2.1.1.20160226-1_armhf.deb'.
dpkg-genchanges -B -mRaspbian wandboard test autobuilder <root@raspbian.org> >../macs_2.1.1.20160226-1_armhf.changes
dpkg-genchanges: warning: package macs-dbgsym listed in files list but not in control info
dpkg-genchanges: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build macs-2.1.1.20160226
dpkg-buildpackage: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 20160311-1419
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
macs_2.1.1.20160226-1_armhf.changes:
------------------------------------
Format: 1.8
Date: Sat, 05 Mar 2016 09:53:12 -0800
Source: macs
Binary: macs
Architecture: armhf
Version: 2.1.1.20160226-1
Distribution: stretch-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Michael R. Crusoe <crusoe@ucdavis.edu>
Description:
macs - Model-based Analysis of ChIP-Seq on short reads sequencers
Changes:
macs (2.1.1.20160226-1) unstable; urgency=medium
.
* New upstream release
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Files:
3d7a254de27ce8d2de130149831f9a98 3038958 debug extra macs-dbgsym_2.1.1.20160226-1_armhf.deb
9d3f88fa7ad5cdc68695badc66ff9251 917556 science optional macs_2.1.1.20160226-1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
macs-dbgsym_2.1.1.20160226-1_armhf.deb
--------------------------------------
new debian package, version 2.0.
size 3038958 bytes: control archive=1253 bytes.
989 bytes, 13 lines control
1590 bytes, 15 lines md5sums
Package: macs-dbgsym
Source: macs
Version: 2.1.1.20160226-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 3336
Depends: macs (= 2.1.1.20160226-1)
Section: debug
Priority: extra
Homepage: http://github.com/taoliu/MACS/
Description: Debug symbols for macs
Auto-Built-Package: debug-symbols
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drwxr-xr-x root/root 0 2016-03-11 14:18 ./
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-rw-r--r-- root/root 104884 2016-03-11 14:18 ./usr/lib/debug/.build-id/5c/d4ef5ba4c439c0babbadb18c6f7f260a5bec00.debug
drwxr-xr-x root/root 0 2016-03-11 14:18 ./usr/lib/debug/.build-id/ac/
-rw-r--r-- root/root 328616 2016-03-11 14:18 ./usr/lib/debug/.build-id/ac/b86955af336754b6206331cf79e577596d1d6c.debug
drwxr-xr-x root/root 0 2016-03-11 14:18 ./usr/lib/debug/.build-id/b2/
-rw-r--r-- root/root 271652 2016-03-11 14:18 ./usr/lib/debug/.build-id/b2/9b647ee56e46777a563f2a9ab97d2a36be99c4.debug
drwxr-xr-x root/root 0 2016-03-11 14:18 ./usr/lib/debug/.build-id/b3/
-rw-r--r-- root/root 102880 2016-03-11 14:18 ./usr/lib/debug/.build-id/b3/602c74a221fcf5162bca88348036c2376620d0.debug
drwxr-xr-x root/root 0 2016-03-11 14:18 ./usr/lib/debug/.build-id/c0/
-rw-r--r-- root/root 200480 2016-03-11 14:18 ./usr/lib/debug/.build-id/c0/92cd398b58fee0bdd69d3173605ccf85101768.debug
drwxr-xr-x root/root 0 2016-03-11 14:18 ./usr/lib/debug/.build-id/c8/
-rw-r--r-- root/root 57352 2016-03-11 14:18 ./usr/lib/debug/.build-id/c8/daf276f19048d057e6e8585d8337bc27f165c5.debug
drwxr-xr-x root/root 0 2016-03-11 14:18 ./usr/lib/debug/.build-id/d6/
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drwxr-xr-x root/root 0 2016-03-11 14:18 ./usr/lib/debug/.build-id/f6/
-rw-r--r-- root/root 109064 2016-03-11 14:18 ./usr/lib/debug/.build-id/f6/192bc79836a8955a6450e23b66cfe89de35107.debug
drwxr-xr-x root/root 0 2016-03-11 14:18 ./usr/lib/debug/.build-id/ff/
-rw-r--r-- root/root 70368 2016-03-11 14:18 ./usr/lib/debug/.build-id/ff/54a7bf0a4e383fce630c44df64496c6e05b8be.debug
drwxr-xr-x root/root 0 2016-03-11 14:18 ./usr/share/
drwxr-xr-x root/root 0 2016-03-11 14:18 ./usr/share/doc/
lrwxrwxrwx root/root 0 2016-03-11 14:18 ./usr/share/doc/macs-dbgsym -> macs
macs_2.1.1.20160226-1_armhf.deb
-------------------------------
new debian package, version 2.0.
size 917556 bytes: control archive=2932 bytes.
979 bytes, 18 lines control
5484 bytes, 62 lines md5sums
152 bytes, 9 lines * postinst #!/bin/sh
243 bytes, 14 lines * prerm #!/bin/sh
Package: macs
Version: 2.1.1.20160226-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 3457
Depends: cython, python (<< 2.8), python (>= 2.7~), python-numpy, python:any (>= 2.7.5-5~), libc6 (>= 2.15)
Section: science
Priority: optional
Homepage: http://github.com/taoliu/MACS/
Description: Model-based Analysis of ChIP-Seq on short reads sequencers
MACS empirically models the length of the sequenced ChIP fragments, which
tends to be shorter than sonication or library construction size estimates,
and uses it to improve the spatial resolution of predicted binding sites.
MACS also uses a dynamic Poisson distribution to effectively capture local
biases in the genome sequence, allowing for more sensitive and robust
prediction. MACS compares favorably to existing ChIP-Seq peak-finding
algorithms, is publicly available open source, and can be used for ChIP-Seq
with or without control samples.
drwxr-xr-x root/root 0 2016-03-11 14:18 ./
drwxr-xr-x root/root 0 2016-03-11 14:18 ./usr/
drwxr-xr-x root/root 0 2016-03-11 14:18 ./usr/bin/
-rwxr-xr-x root/root 59627 2016-03-11 14:18 ./usr/bin/macs2
drwxr-xr-x root/root 0 2016-03-11 14:18 ./usr/lib/
drwxr-xr-x root/root 0 2016-03-11 14:18 ./usr/lib/python2.7/
drwxr-xr-x root/root 0 2016-03-11 14:18 ./usr/lib/python2.7/dist-packages/
drwxr-xr-x root/root 0 2016-03-11 14:18 ./usr/lib/python2.7/dist-packages/MACS2-2.1.1.20160226.egg-info/
-rw-r--r-- root/root 673 2016-03-11 14:18 ./usr/lib/python2.7/dist-packages/MACS2-2.1.1.20160226.egg-info/PKG-INFO
-rw-r--r-- root/root 1 2016-03-11 14:18 ./usr/lib/python2.7/dist-packages/MACS2-2.1.1.20160226.egg-info/dependency_links.txt
-rw-r--r-- root/root 0 2016-03-11 14:18 ./usr/lib/python2.7/dist-packages/MACS2-2.1.1.20160226.egg-info/requires.txt
-rw-r--r-- root/root 6 2016-03-11 14:18 ./usr/lib/python2.7/dist-packages/MACS2-2.1.1.20160226.egg-info/top_level.txt
drwxr-xr-x root/root 0 2016-03-11 14:18 ./usr/lib/python2.7/dist-packages/MACS2/
-rw-r--r-- root/root 901 2016-02-26 15:42 ./usr/lib/python2.7/dist-packages/MACS2/Constants.py
drwxr-xr-x root/root 0 2016-03-11 14:18 ./usr/lib/python2.7/dist-packages/MACS2/IO/
-rw-r--r-- root/root 323016 2016-03-11 14:18 ./usr/lib/python2.7/dist-packages/MACS2/IO/BedGraph.arm-linux-gnueabihf.so
-rw-r--r-- root/root 49728 2016-03-11 14:18 ./usr/lib/python2.7/dist-packages/MACS2/IO/BedGraphIO.arm-linux-gnueabihf.so
-rw-r--r-- root/root 11086 2013-12-16 21:59 ./usr/lib/python2.7/dist-packages/MACS2/IO/BinKeeper.py
-rw-r--r-- root/root 391408 2016-03-11 14:18 ./usr/lib/python2.7/dist-packages/MACS2/IO/CallPeakUnit.arm-linux-gnueabihf.so
-rw-r--r-- root/root 306940 2016-03-11 14:18 ./usr/lib/python2.7/dist-packages/MACS2/IO/FixWidthTrack.arm-linux-gnueabihf.so
-rw-r--r-- root/root 173136 2016-03-11 14:18 ./usr/lib/python2.7/dist-packages/MACS2/IO/PairedEndTrack.arm-linux-gnueabihf.so
-rw-r--r-- root/root 258204 2016-03-11 14:18 ./usr/lib/python2.7/dist-packages/MACS2/IO/Parser.arm-linux-gnueabihf.so
-rw-r--r-- root/root 360020 2016-03-11 14:18 ./usr/lib/python2.7/dist-packages/MACS2/IO/PeakIO.arm-linux-gnueabihf.so
-rw-r--r-- root/root 499428 2016-03-11 14:18 ./usr/lib/python2.7/dist-packages/MACS2/IO/ScoreTrack.arm-linux-gnueabihf.so
-rw-r--r-- root/root 0 2013-12-16 21:59 ./usr/lib/python2.7/dist-packages/MACS2/IO/__init__.py
-rw-r--r-- root/root 1017 2015-02-16 21:28 ./usr/lib/python2.7/dist-packages/MACS2/IO/test_processing.py
-rw-r--r-- root/root 944 2015-02-16 21:24 ./usr/lib/python2.7/dist-packages/MACS2/IO/test_threading.py
-rw-r--r-- root/root 27201 2016-02-15 19:57 ./usr/lib/python2.7/dist-packages/MACS2/OptValidator.py
-rw-r--r-- root/root 10994 2013-12-16 21:59 ./usr/lib/python2.7/dist-packages/MACS2/OutputWriter.py
-rw-r--r-- root/root 99276 2016-03-11 14:18 ./usr/lib/python2.7/dist-packages/MACS2/PeakDetect.arm-linux-gnueabihf.so
-rw-r--r-- root/root 173608 2016-03-11 14:18 ./usr/lib/python2.7/dist-packages/MACS2/PeakModel.arm-linux-gnueabihf.so
-rw-r--r-- root/root 179004 2016-03-11 14:18 ./usr/lib/python2.7/dist-packages/MACS2/Pileup.arm-linux-gnueabihf.so
-rw-r--r-- root/root 87716 2016-03-11 14:18 ./usr/lib/python2.7/dist-packages/MACS2/Prob.arm-linux-gnueabihf.so
-rw-r--r-- root/root 131412 2016-03-11 14:18 ./usr/lib/python2.7/dist-packages/MACS2/Signal.arm-linux-gnueabihf.so
-rw-r--r-- root/root 61380 2016-03-11 14:18 ./usr/lib/python2.7/dist-packages/MACS2/Statistics.arm-linux-gnueabihf.so
-rw-r--r-- root/root 24 2013-12-16 21:59 ./usr/lib/python2.7/dist-packages/MACS2/__init__.py
-rw-r--r-- root/root 2566 2015-03-05 18:45 ./usr/lib/python2.7/dist-packages/MACS2/bdgbroadcall_cmd.py
-rw-r--r-- root/root 3515 2016-02-12 05:11 ./usr/lib/python2.7/dist-packages/MACS2/bdgcmp_cmd.py
-rw-r--r-- root/root 4496 2015-03-05 18:46 ./usr/lib/python2.7/dist-packages/MACS2/bdgdiff_cmd.py
-rw-r--r-- root/root 2597 2016-02-12 05:43 ./usr/lib/python2.7/dist-packages/MACS2/bdgopt_cmd.py
-rw-r--r-- root/root 2830 2015-03-05 18:45 ./usr/lib/python2.7/dist-packages/MACS2/bdgpeakcall_cmd.py
-rw-r--r-- root/root 19585 2016-02-15 21:12 ./usr/lib/python2.7/dist-packages/MACS2/callpeak_cmd.py
-rw-r--r-- root/root 1708 2015-03-05 18:47 ./usr/lib/python2.7/dist-packages/MACS2/cmbreps_cmd.py
drwxr-xr-x root/root 0 2016-03-11 14:18 ./usr/lib/python2.7/dist-packages/MACS2/data/
-rw-r--r-- root/root 1026 2013-10-24 17:25 ./usr/lib/python2.7/dist-packages/MACS2/data/__init__.py
-rw-r--r-- root/root 40804 2013-10-24 17:25 ./usr/lib/python2.7/dist-packages/MACS2/data/g0.01.dat
-rw-r--r-- root/root 40804 2013-10-24 17:25 ./usr/lib/python2.7/dist-packages/MACS2/data/g0.05.dat
-rw-r--r-- root/root 9993 2015-07-27 17:52 ./usr/lib/python2.7/dist-packages/MACS2/diffpeak_cmd.py
-rw-r--r-- root/root 3880 2015-07-27 17:51 ./usr/lib/python2.7/dist-packages/MACS2/filterdup_cmd.py
-rw-r--r-- root/root 87008 2016-03-11 14:18 ./usr/lib/python2.7/dist-packages/MACS2/hashtable.arm-linux-gnueabihf.so
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-rw-r--r-- root/root 3035 2015-06-03 03:55 ./usr/lib/python2.7/dist-packages/MACS2/randsample_cmd.py
-rw-r--r-- root/root 6920 2015-06-03 04:50 ./usr/lib/python2.7/dist-packages/MACS2/refinepeak_cmd.py
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-rw-r--r-- root/root 8754 2016-02-15 20:31 ./usr/share/doc/macs/README.rst.gz
-rw-r--r-- root/root 1144 2016-03-05 17:53 ./usr/share/doc/macs/changelog.Debian.gz
-rw-r--r-- root/root 15009 2016-02-26 15:43 ./usr/share/doc/macs/changelog.gz
-rw-r--r-- root/root 3364 2016-03-05 17:22 ./usr/share/doc/macs/copyright
drwxr-xr-x root/root 0 2016-03-11 14:18 ./usr/share/lintian/
drwxr-xr-x root/root 0 2016-03-11 14:18 ./usr/share/lintian/overrides/
-rw-r--r-- root/root 107 2016-03-05 17:22 ./usr/share/lintian/overrides/macs
drwxr-xr-x root/root 0 2016-03-11 14:18 ./usr/share/man/
drwxr-xr-x root/root 0 2016-03-11 14:18 ./usr/share/man/man1/
-rw-r--r-- root/root 1057 2016-03-11 14:18 ./usr/share/man/man1/macs2.1.gz
-rw-r--r-- root/root 877 2016-03-11 14:18 ./usr/share/man/man1/macs2_bdgbroadcall.1.gz
-rw-r--r-- root/root 1403 2016-03-11 14:18 ./usr/share/man/man1/macs2_bdgcmp.1.gz
-rw-r--r-- root/root 1201 2016-03-11 14:18 ./usr/share/man/man1/macs2_bdgdiff.1.gz
-rw-r--r-- root/root 917 2016-03-11 14:18 ./usr/share/man/man1/macs2_bdgopt.1.gz
-rw-r--r-- root/root 926 2016-03-11 14:18 ./usr/share/man/man1/macs2_bdgpeakcall.1.gz
-rw-r--r-- root/root 4579 2016-03-11 14:18 ./usr/share/man/man1/macs2_callpeak.1.gz
-rw-r--r-- root/root 785 2016-03-11 14:18 ./usr/share/man/man1/macs2_cmbreps.1.gz
-rw-r--r-- root/root 1616 2016-03-11 14:18 ./usr/share/man/man1/macs2_filterdup.1.gz
-rw-r--r-- root/root 1394 2016-03-11 14:18 ./usr/share/man/man1/macs2_pileup.1.gz
-rw-r--r-- root/root 1329 2016-03-11 14:18 ./usr/share/man/man1/macs2_predictd.1.gz
-rw-r--r-- root/root 1232 2016-03-11 14:18 ./usr/share/man/man1/macs2_randsample.1.gz
-rw-r--r-- root/root 1061 2016-03-11 14:18 ./usr/share/man/man1/macs2_refinepeak.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 55472
Build-Time: 1265
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 512
Job: macs_2.1.1.20160226-1
Machine Architecture: armhf
Package: macs
Package-Time: 1817
Source-Version: 2.1.1.20160226-1
Space: 55472
Status: successful
Version: 2.1.1.20160226-1
--------------------------------------------------------------------------------
Finished at 20160311-1419
Build needed 00:30:17, 55472k disc space